Query 027432
Match_columns 223
No_of_seqs 314 out of 1648
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 16:25:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027432.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027432hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m9o_A Tristetraproline; Cys3H 99.8 1.1E-19 3.6E-24 130.2 3.3 35 25-59 7-41 (77)
2 1zzk_A Heterogeneous nuclear r 99.6 2.8E-16 9.6E-21 113.8 7.1 75 95-169 4-78 (82)
3 1wvn_A Poly(RC)-binding protei 99.6 2.3E-16 8E-21 114.2 6.3 74 95-168 3-76 (82)
4 2p2r_A Poly(RC)-binding protei 99.6 3E-16 1E-20 112.0 5.3 71 97-167 4-74 (76)
5 1x4n_A FAR upstream element bi 99.6 1E-15 3.5E-20 113.3 8.2 74 97-170 14-87 (92)
6 2hh3_A KH-type splicing regula 99.6 9.1E-16 3.1E-20 116.6 6.4 76 97-172 10-85 (106)
7 1dtj_A RNA-binding neurooncolo 99.6 1.6E-15 5.4E-20 108.0 6.4 70 98-167 3-75 (76)
8 2axy_A Poly(RC)-binding protei 99.6 8.8E-16 3E-20 109.0 4.8 69 97-167 4-72 (73)
9 2hh2_A KH-type splicing regula 99.6 2.9E-15 1E-19 113.8 8.0 73 98-170 7-82 (107)
10 1j5k_A Heterogeneous nuclear r 99.6 8.1E-16 2.8E-20 113.1 4.7 75 95-169 11-85 (89)
11 1x4m_A FAR upstream element bi 99.6 3.3E-15 1.1E-19 110.9 7.0 76 96-171 13-90 (94)
12 1ec6_A RNA-binding protein NOV 99.6 3.7E-15 1.3E-19 109.0 5.6 72 98-169 3-77 (87)
13 2opv_A KHSRP protein; KH domai 99.6 9.1E-15 3.1E-19 106.5 7.6 71 97-167 13-85 (85)
14 2dgr_A Ring finger and KH doma 99.6 4.3E-15 1.5E-19 108.2 5.8 74 93-169 5-78 (83)
15 1we8_A Tudor and KH domain con 99.5 3.1E-14 1.1E-18 107.5 5.9 72 97-168 14-87 (104)
16 2ctl_A Vigilin; K homology typ 99.4 2.8E-13 9.6E-18 101.2 6.5 73 97-169 16-89 (97)
17 1vig_A Vigilin; RNA-binding pr 99.4 3.9E-13 1.3E-17 94.8 6.0 67 97-165 4-70 (71)
18 2cte_A Vigilin; K homology typ 99.4 5.8E-13 2E-17 98.8 5.9 74 95-170 14-87 (94)
19 2jvz_A KH type-splicing, FAR u 99.4 3.9E-13 1.3E-17 107.9 4.6 73 98-170 91-163 (164)
20 1j4w_A FUSE binding protein; s 99.4 4.5E-13 1.5E-17 109.1 5.0 74 97-170 2-75 (174)
21 2ctm_A Vigilin; K homology typ 99.4 1.2E-12 4.1E-17 97.4 6.7 76 94-170 13-88 (95)
22 3krm_A Insulin-like growth fac 99.3 1.1E-12 3.7E-17 105.5 5.8 72 98-169 3-75 (163)
23 2jvz_A KH type-splicing, FAR u 99.3 2.1E-12 7.1E-17 103.6 7.0 73 98-170 2-76 (164)
24 2anr_A Neuro-oncological ventr 99.3 1.2E-12 4E-17 106.9 5.5 73 97-169 103-177 (178)
25 2jzx_A Poly(RC)-binding protei 99.3 1.1E-12 3.9E-17 105.1 4.3 71 97-167 88-159 (160)
26 2anr_A Neuro-oncological ventr 99.3 2.1E-12 7E-17 105.4 5.5 75 96-170 4-81 (178)
27 1j4w_A FUSE binding protein; s 99.3 2.6E-12 9E-17 104.5 6.0 69 97-165 103-174 (174)
28 2ctk_A Vigilin; K homology typ 99.3 1.8E-12 6.2E-17 98.0 4.6 71 97-169 16-86 (104)
29 3krm_A Insulin-like growth fac 99.3 2.8E-12 9.5E-17 103.1 5.8 74 97-170 84-159 (163)
30 2d9m_A Zinc finger CCCH-type d 99.3 3.2E-13 1.1E-17 94.3 -0.2 32 28-60 18-49 (69)
31 2jzx_A Poly(RC)-binding protei 99.2 6.5E-12 2.2E-16 100.7 4.3 70 97-168 4-73 (160)
32 2d9m_A Zinc finger CCCH-type d 99.2 1.4E-12 4.7E-17 91.1 -0.6 30 191-220 19-48 (69)
33 2qnd_A FMR1 protein; KH domain 99.1 3.6E-11 1.2E-15 95.6 4.5 70 99-168 68-143 (144)
34 2ctj_A Vigilin; K homology typ 99.1 1E-10 3.6E-15 86.9 6.2 76 93-170 12-88 (95)
35 2cqe_A KIAA1064 protein; CCCH 99.0 1.3E-10 4.5E-15 86.9 4.5 26 26-52 9-34 (98)
36 2d9n_A Cleavage and polyadenyl 99.0 1.6E-10 5.4E-15 82.7 4.1 27 25-52 5-31 (77)
37 2ctf_A Vigilin; K homology typ 99.0 5.6E-10 1.9E-14 84.0 6.2 68 98-170 27-95 (102)
38 2cpq_A FragIle X mental retard 99.0 2.7E-10 9.4E-15 84.0 4.0 71 95-170 12-84 (91)
39 1m9o_A Tristetraproline; Cys3H 98.9 5.7E-10 2E-14 79.2 3.3 34 187-220 7-41 (77)
40 3d2q_A Muscleblind-like protei 98.9 5.4E-10 1.8E-14 78.5 2.3 31 189-220 39-69 (70)
41 2rhk_C Cleavage and polyadenyl 98.8 1.2E-09 4.3E-14 77.1 2.1 28 24-52 10-37 (72)
42 1k1g_A SF1-BO isoform; splicin 98.8 1.1E-08 3.7E-13 80.3 6.7 74 95-168 4-100 (131)
43 2yqr_A KIAA0907 protein; struc 98.7 1.4E-08 4.7E-13 78.4 6.3 73 97-169 11-101 (119)
44 3n89_A Defective in GERM LINE 98.7 1.3E-08 4.4E-13 92.5 5.9 71 95-165 27-104 (376)
45 2e5s_A Otthump00000018578; ZF- 98.6 3.2E-09 1.1E-13 79.4 -0.4 31 189-220 53-83 (98)
46 2e3u_A PH-DIM2P, hypothetical 98.4 7.8E-08 2.7E-12 81.5 2.9 56 107-169 138-193 (219)
47 2e3u_A PH-DIM2P, hypothetical 98.4 1.2E-07 4E-12 80.4 3.8 66 97-167 33-103 (219)
48 2bl5_A MGC83862 protein, quaki 98.4 1.7E-07 5.8E-12 74.2 3.3 71 98-168 2-102 (140)
49 3v69_A Protein filia; RNA-bind 98.4 7.7E-07 2.6E-11 69.8 6.6 69 97-166 55-123 (140)
50 1tua_A Hypothetical protein AP 98.3 4E-07 1.4E-11 75.6 4.7 67 99-170 5-76 (191)
51 3n89_A Defective in GERM LINE 98.3 8.4E-07 2.9E-11 80.5 6.5 70 97-166 185-260 (376)
52 2d9n_A Cleavage and polyadenyl 98.3 2.6E-07 8.9E-12 65.8 2.3 37 184-220 2-38 (77)
53 3d2n_A Muscleblind-like protei 98.2 4.1E-07 1.4E-11 65.8 2.6 27 25-52 4-31 (83)
54 2qnd_A FMR1 protein; KH domain 98.1 1.6E-06 5.5E-11 68.6 4.0 62 97-161 3-64 (144)
55 1tua_A Hypothetical protein AP 98.1 9.5E-07 3.3E-11 73.3 2.6 54 107-167 107-160 (191)
56 3u1k_A Polyribonucleotide nucl 98.1 1.5E-06 5.2E-11 83.7 3.6 63 97-165 566-629 (630)
57 2cqe_A KIAA1064 protein; CCCH 98.0 4E-06 1.4E-10 62.4 3.5 27 188-214 9-35 (98)
58 2rhk_C Cleavage and polyadenyl 97.8 4.3E-06 1.5E-10 58.8 1.3 34 187-220 11-44 (72)
59 2rpp_A Muscleblind-like protei 97.8 7.5E-06 2.6E-10 59.9 2.4 28 191-219 50-77 (89)
60 4aid_A Polyribonucleotide nucl 97.6 1.3E-05 4.5E-10 78.3 1.5 68 98-171 570-638 (726)
61 3d2q_A Muscleblind-like protei 97.4 4.3E-05 1.5E-09 53.2 1.3 28 191-218 5-33 (70)
62 2e5s_A Otthump00000018578; ZF- 97.1 9.8E-05 3.4E-09 54.8 1.0 32 187-218 15-47 (98)
63 2fc6_A Nuclear, target of EGR1 97.1 0.0001 3.4E-09 47.8 0.8 28 27-54 17-44 (50)
64 3d2n_A Muscleblind-like protei 97.0 0.00038 1.3E-08 50.1 2.7 30 188-217 5-35 (83)
65 2rpp_A Muscleblind-like protei 96.4 0.00076 2.6E-08 49.2 0.8 30 188-217 13-43 (89)
66 2fc6_A Nuclear, target of EGR1 96.2 0.0017 5.8E-08 42.0 1.4 28 189-216 17-45 (50)
67 3cdi_A Polynucleotide phosphor 95.9 0.0012 4.2E-08 64.5 0.0 67 98-170 560-627 (723)
68 1e3p_A Guanosine pentaphosphat 95.4 0.0014 4.7E-08 64.4 -1.8 61 99-165 599-660 (757)
69 3u9g_A Zinc finger CCCH-type a 91.4 0.11 3.9E-06 43.7 3.0 21 194-215 177-197 (229)
70 3u1l_A PRE-mRNA-splicing facto 90.9 0.04 1.4E-06 46.8 -0.2 22 193-214 71-92 (240)
71 2cxc_A NUSA; transcription ter 90.8 0.1 3.6E-06 41.0 2.1 37 98-134 36-72 (144)
72 3u1l_A PRE-mRNA-splicing facto 88.8 0.096 3.3E-06 44.4 0.5 22 31-53 71-92 (240)
73 2asb_A Transcription elongatio 81.8 0.56 1.9E-05 40.1 1.8 39 97-135 183-221 (251)
74 2cxc_A NUSA; transcription ter 80.5 0.16 5.4E-06 39.9 -1.9 39 96-134 101-139 (144)
75 1k0r_A NUSA; two component arr 77.0 0.99 3.4E-05 40.6 2.0 39 97-135 306-344 (366)
76 1hh2_P NUSA, N utilization sub 75.8 1.1 3.8E-05 39.9 2.0 39 96-134 301-339 (344)
77 2pt7_G HP1451, hypothetical pr 73.0 1.1 3.9E-05 35.3 1.2 30 98-127 33-62 (152)
78 1wh9_A 40S ribosomal protein S 68.1 1.3 4.4E-05 31.9 0.5 29 98-126 35-63 (92)
79 3v33_A Ribonuclease ZC3H12A; r 59.0 2 6.8E-05 36.0 0.0 26 27-55 189-214 (223)
80 3u9g_A Zinc finger CCCH-type a 53.7 4.1 0.00014 34.2 1.1 24 193-216 90-117 (229)
81 2asb_A Transcription elongatio 52.3 3.2 0.00011 35.3 0.2 28 107-134 126-154 (251)
82 3u5c_D RP13, YS3, 40S ribosoma 46.9 7.4 0.00025 32.9 1.6 28 99-126 45-72 (240)
83 1k0r_A NUSA; two component arr 43.3 5.5 0.00019 35.7 0.3 35 100-134 237-277 (366)
84 3j20_C 30S ribosomal protein S 40.3 7.1 0.00024 32.3 0.5 27 99-125 41-67 (210)
85 3iz6_B 40S ribosomal protein S 39.2 8.3 0.00028 32.3 0.7 29 98-126 44-72 (227)
86 3gku_A Probable RNA-binding pr 37.8 6.5 0.00022 32.9 -0.1 33 98-130 92-124 (225)
87 2xzm_C KH domain containing pr 37.6 10 0.00035 32.1 1.0 29 98-126 47-75 (243)
88 3v33_A Ribonuclease ZC3H12A; r 37.5 7 0.00024 32.7 0.0 15 202-216 200-214 (223)
89 2lhn_A Nuclear polyadenylated 40.3 8.6 0.00029 27.0 0.0 19 30-52 9-27 (80)
90 3iev_A GTP-binding protein ERA 33.6 7.1 0.00024 33.3 -0.6 27 100-126 242-269 (308)
91 3bbn_C Ribosomal protein S3; s 33.0 12 0.0004 31.1 0.6 28 99-126 71-98 (218)
92 1ans_A Neurotoxin III; NMR {An 32.3 23 0.00078 19.4 1.5 15 33-49 4-18 (27)
93 3r8n_C 30S ribosomal protein S 32.0 7.7 0.00026 32.0 -0.6 35 99-133 62-100 (206)
94 2vqe_C 30S ribosomal protein S 31.6 13 0.00045 31.3 0.7 28 99-126 63-90 (239)
95 3i1m_C 30S ribosomal protein S 30.2 8.8 0.0003 32.3 -0.5 35 99-133 63-101 (233)
96 2zkq_c 40S ribosomal protein S 28.4 10 0.00035 32.1 -0.5 29 98-126 44-72 (243)
97 2ba0_A Archeal exosome RNA bin 27.7 85 0.0029 25.7 5.1 58 100-163 138-195 (229)
98 1hh2_P NUSA, N utilization sub 24.4 27 0.00092 30.9 1.5 28 107-134 245-273 (344)
99 1wf3_A GTP-binding protein; GT 24.3 12 0.00041 31.9 -0.8 25 102-126 234-259 (301)
100 2z0s_A Probable exosome comple 23.5 1.6E+02 0.0056 24.0 6.2 60 100-164 150-209 (235)
No 1
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.77 E-value=1.1e-19 Score=130.20 Aligned_cols=35 Identities=34% Similarity=0.795 Sum_probs=32.1
Q ss_pred CCccccccCcccccccCCCCCCCCCCcccccccCC
Q 027432 25 PTVVKSRMCNRLNSAEGCKFGDKCHFAHGEWELGK 59 (223)
Q Consensus 25 ~~~~kt~~C~~~~~~g~C~~g~~C~faH~~~el~~ 59 (223)
+++|||+||++|...|.|+||++|+|+|+.+||+.
T Consensus 7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~ 41 (77)
T 1m9o_A 7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQ 41 (77)
T ss_dssp SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGG
T ss_pred CCCccchhCHHhhhCCCcCCCCCccCCCCChhhcc
Confidence 47899999999988899999999999999988874
No 2
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.64 E-value=2.8e-16 Score=113.85 Aligned_cols=75 Identities=31% Similarity=0.512 Sum_probs=69.3
Q ss_pred CCcceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCCCCCCceEEEEcCCHHHHHHHHHHHHhhhhhcC
Q 027432 95 GASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIG 169 (223)
Q Consensus 95 g~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~~~ 169 (223)
+...+.++.||.+++|.||||+|++|++|+++|||+|+|.+..++..++.|+|+|+++++++|+.+|.+++.+..
T Consensus 4 g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~ 78 (82)
T 1zzk_A 4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYS 78 (82)
T ss_dssp CCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 456789999999999999999999999999999999999876667788999999999999999999999998754
No 3
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.64 E-value=2.3e-16 Score=114.19 Aligned_cols=74 Identities=24% Similarity=0.438 Sum_probs=67.4
Q ss_pred CCcceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCCCCCCceEEEEcCCHHHHHHHHHHHHhhhhhc
Q 027432 95 GASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRI 168 (223)
Q Consensus 95 g~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~~ 168 (223)
+...+.++.||.+++|.||||+|++|++|+++|||+|+|.+..++..++.|+|+|+++++++|+.+|.+++.+.
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 45678999999999999999999999999999999999987666778999999999999999999999999765
No 4
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.62 E-value=3e-16 Score=111.98 Aligned_cols=71 Identities=21% Similarity=0.409 Sum_probs=66.5
Q ss_pred cceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCCCCCCceEEEEcCCHHHHHHHHHHHHhhhhh
Q 027432 97 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVR 167 (223)
Q Consensus 97 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~ 167 (223)
..+.++.||.+.+|.||||||++|++|+++|||+|+|.+..++..++.|+|+|++++++.|+.+|.+++.+
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSS 74 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHHHHHc
Confidence 56789999999999999999999999999999999998766777899999999999999999999999865
No 5
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.62 E-value=1e-15 Score=113.31 Aligned_cols=74 Identities=23% Similarity=0.392 Sum_probs=68.7
Q ss_pred cceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCCCCCCceEEEEcCCHHHHHHHHHHHHhhhhhcCC
Q 027432 97 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIGP 170 (223)
Q Consensus 97 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~~~~ 170 (223)
..+.+|.||.+++|.||||+|++|++|+++|||+|+|.+...+..++.|+|+|+++++++|+.+|.+++.+...
T Consensus 14 ~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~~~ 87 (92)
T 1x4n_A 14 VMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRS 87 (92)
T ss_dssp CEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhccc
Confidence 57899999999999999999999999999999999998766667789999999999999999999999988665
No 6
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=9.1e-16 Score=116.62 Aligned_cols=76 Identities=14% Similarity=0.342 Sum_probs=67.1
Q ss_pred cceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCCCCCCceEEEEcCCHHHHHHHHHHHHhhhhhcCCCC
Q 027432 97 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIGPAH 172 (223)
Q Consensus 97 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~~~~~p 172 (223)
..+.+|.||.+++|.||||+|++||+|+++|||+|+|.+...+..+|.|+|+|+++++++|+.+|.+++.+.+..+
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~~g~ 85 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLRSGP 85 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHHHHHHHHHHHHHHHHHHC---
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhccccCC
Confidence 3578999999999999999999999999999999999766666678999999999999999999999999887653
No 7
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.59 E-value=1.6e-15 Score=107.99 Aligned_cols=70 Identities=24% Similarity=0.395 Sum_probs=63.2
Q ss_pred ceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccC---CCCCCceEEEEcCCHHHHHHHHHHHHhhhhh
Q 027432 98 ATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDH---EADPNLRNIELEGSFEQIKQASAMVRELIVR 167 (223)
Q Consensus 98 ~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~---~~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~ 167 (223)
.+.++.||.+.+|.||||+|++|++|++.|||+|+|.+. .++..++.|+|+|++++++.|+.+|.+++.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999653 2456689999999999999999999999864
No 8
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.59 E-value=8.8e-16 Score=108.99 Aligned_cols=69 Identities=28% Similarity=0.413 Sum_probs=63.7
Q ss_pred cceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCCCCCCceEEEEcCCHHHHHHHHHHHHhhhhh
Q 027432 97 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVR 167 (223)
Q Consensus 97 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~ 167 (223)
..+.+++||.+.+|.||||||++|++|+++|||+|+|.+. +..+|.|+|+|+++++.+|+.+|.++|.+
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~--~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS--CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC--CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999999999999999765 45689999999999999999999999875
No 9
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=2.9e-15 Score=113.84 Aligned_cols=73 Identities=33% Similarity=0.447 Sum_probs=65.7
Q ss_pred ceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCC---CCCCceEEEEcCCHHHHHHHHHHHHhhhhhcCC
Q 027432 98 ATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHE---ADPNLRNIELEGSFEQIKQASAMVRELIVRIGP 170 (223)
Q Consensus 98 ~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~---~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~~~~ 170 (223)
.+.+|.||.+++|.||||+|++||+|+++|||+|+|.+.. .+..++.|+|+|+++++++|+.+|.+++.+...
T Consensus 7 ~~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~~ 82 (107)
T 2hh2_A 7 GEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPLC 82 (107)
T ss_dssp CCEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSCCC
T ss_pred CeEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhcccc
Confidence 3789999999999999999999999999999999996542 335679999999999999999999999987653
No 10
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.59 E-value=8.1e-16 Score=113.13 Aligned_cols=75 Identities=31% Similarity=0.512 Sum_probs=68.9
Q ss_pred CCcceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCCCCCCceEEEEcCCHHHHHHHHHHHHhhhhhcC
Q 027432 95 GASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIG 169 (223)
Q Consensus 95 g~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~~~ 169 (223)
+...+.++.||.+++|.||||+|++||+|+++|||+|+|.+..++..++.|+|+|+++++++|+.+|.+++.+..
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~~ 85 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYS 85 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHHhhh
Confidence 346788999999999999999999999999999999999876667788999999999999999999999998753
No 11
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.57 E-value=3.3e-15 Score=110.95 Aligned_cols=76 Identities=32% Similarity=0.451 Sum_probs=68.0
Q ss_pred CcceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCCC--CCCceEEEEcCCHHHHHHHHHHHHhhhhhcCCC
Q 027432 96 ASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEA--DPNLRNIELEGSFEQIKQASAMVRELIVRIGPA 171 (223)
Q Consensus 96 ~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~--~~~~r~v~I~G~~~~i~~A~~lI~~~i~~~~~~ 171 (223)
...+.+|.||.+++|.||||+|++||+|+++|||+|+|.+... ...+|.|+|+|++++++.|+.+|.+++.+.+..
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~~ 90 (94)
T 1x4m_A 13 GNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGSG 90 (94)
T ss_dssp CCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCCCSSC
T ss_pred CcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhccCCC
Confidence 4678999999999999999999999999999999999975432 346899999999999999999999999887653
No 12
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.55 E-value=3.7e-15 Score=109.00 Aligned_cols=72 Identities=25% Similarity=0.374 Sum_probs=65.3
Q ss_pred ceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccC---CCCCCceEEEEcCCHHHHHHHHHHHHhhhhhcC
Q 027432 98 ATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDH---EADPNLRNIELEGSFEQIKQASAMVRELIVRIG 169 (223)
Q Consensus 98 ~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~---~~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~~~ 169 (223)
.+.++.||.+.+|.||||||++|++|++.|||+|+|.+. .++..++.|+|+|++++++.|+.+|.+++.+.+
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhccc
Confidence 578999999999999999999999999999999999754 245678999999999999999999999998754
No 13
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.55 E-value=9.1e-15 Score=106.51 Aligned_cols=71 Identities=25% Similarity=0.402 Sum_probs=63.9
Q ss_pred cceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCC--CCCCceEEEEcCCHHHHHHHHHHHHhhhhh
Q 027432 97 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHE--ADPNLRNIELEGSFEQIKQASAMVRELIVR 167 (223)
Q Consensus 97 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~--~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~ 167 (223)
..+.++.||.+++|.||||+|++||+|+++|||+|+|.+.. ....+|.|+|+|++++++.|+.+|.+++.+
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 46789999999999999999999999999999999996543 345689999999999999999999998853
No 14
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=4.3e-15 Score=108.18 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=65.0
Q ss_pred CCCCcceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCCCCCCceEEEEcCCHHHHHHHHHHHHhhhhhcC
Q 027432 93 SFGASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIG 169 (223)
Q Consensus 93 s~g~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~~~ 169 (223)
+.....+.++.||.+++|+||||+|++||+|+++||++|+|...+. ++.|+|+|+++++++|+.+|.+++....
T Consensus 5 ~~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~---~~~v~ItG~~e~v~~A~~~I~~~i~~r~ 78 (83)
T 2dgr_A 5 SSGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDK---EPVFAVTGMPENVDRAREEIEAHITLRS 78 (83)
T ss_dssp CSCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSSS---CCEEEEEECTTTHHHHHHHHHHHHHSCC
T ss_pred CCCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCCC---CCeEEEEcCHHHHHHHHHHHHHHHhccc
Confidence 3445678999999999999999999999999999999999974332 5889999999999999999999876544
No 15
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.48 E-value=3.1e-14 Score=107.52 Aligned_cols=72 Identities=25% Similarity=0.446 Sum_probs=64.4
Q ss_pred cceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCCCC--CCceEEEEcCCHHHHHHHHHHHHhhhhhc
Q 027432 97 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEAD--PNLRNIELEGSFEQIKQASAMVRELIVRI 168 (223)
Q Consensus 97 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~--~~~r~v~I~G~~~~i~~A~~lI~~~i~~~ 168 (223)
..+.+|.||.+++|.||||+|++|++|+++|||+|+|.+.... ..++.|+|+|+.+++++|+.+|.+++.+.
T Consensus 14 p~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 14 PVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp EEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 4678999999999999999999999999999999999764432 35899999999999999999999999753
No 16
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.41 E-value=2.8e-13 Score=101.19 Aligned_cols=73 Identities=18% Similarity=0.283 Sum_probs=65.2
Q ss_pred cceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCC-CCCCceEEEEcCCHHHHHHHHHHHHhhhhhcC
Q 027432 97 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHE-ADPNLRNIELEGSFEQIKQASAMVRELIVRIG 169 (223)
Q Consensus 97 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~-~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~~~ 169 (223)
..+.++.||.+++|.|||+||++|+.|+++||++|+|.+.. +...++.|+|+|+.++++.|+.+|.+++.+.+
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~e 89 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVGELE 89 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999996543 33467999999999999999999999998754
No 17
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.39 E-value=3.9e-13 Score=94.75 Aligned_cols=67 Identities=25% Similarity=0.332 Sum_probs=60.7
Q ss_pred cceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCCCCCCceEEEEcCCHHHHHHHHHHHHhhh
Q 027432 97 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELI 165 (223)
Q Consensus 97 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~~~~r~v~I~G~~~~i~~A~~lI~~~i 165 (223)
..+.++.||.+++|.|||+||++|++|+++||++|.|.+.. ..++.|+|+|+.+++++|+.+|.+++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g--~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS--EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC--SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC--CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999997543 25689999999999999999999875
No 18
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.37 E-value=5.8e-13 Score=98.79 Aligned_cols=74 Identities=20% Similarity=0.268 Sum_probs=64.8
Q ss_pred CCcceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCCCCCCceEEEEcCCHHHHHHHHHHHHhhhhhcCC
Q 027432 95 GASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIGP 170 (223)
Q Consensus 95 g~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~~~~ 170 (223)
....+.++.||.+++|.|||+||.+||+|+++||++|+|.+.+ ..++.|+|+|+++++++|+.+|.+++.+...
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~--~~~~~V~I~G~~e~v~~A~~~I~~i~~~~~~ 87 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD--DPSNQIKITGTKEGIEKARHEVLLISAEQDK 87 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT--SSCCEEEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC--CCCCeEEEEECHHHHHHHHHHHHHHhhcccc
Confidence 3456899999999999999999999999999999999997533 2357899999999999999999999987543
No 19
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.36 E-value=3.9e-13 Score=107.92 Aligned_cols=73 Identities=15% Similarity=0.357 Sum_probs=66.5
Q ss_pred ceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCCCCCCceEEEEcCCHHHHHHHHHHHHhhhhhcCC
Q 027432 98 ATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIGP 170 (223)
Q Consensus 98 ~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~~~~ 170 (223)
.+.++.||.+++|.||||+|.+|++|+++|||+|+|.+......++.|+|+|++++++.|+.+|.+++.+.+.
T Consensus 91 ~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~~ 163 (164)
T 2jvz_A 91 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLRS 163 (164)
T ss_dssp SSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESCHHHHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcCHHHHHHHHHHHHHHHhhhhC
Confidence 4578999999999999999999999999999999997766666689999999999999999999999987653
No 20
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.36 E-value=4.5e-13 Score=109.07 Aligned_cols=74 Identities=16% Similarity=0.371 Sum_probs=67.5
Q ss_pred cceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCCCCCCceEEEEcCCHHHHHHHHHHHHhhhhhcCC
Q 027432 97 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIGP 170 (223)
Q Consensus 97 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~~~~ 170 (223)
+.+.+++||.+.+|.||||+|++||+|+++||++|+|.+.+.+..+|.|+|+|+++++++|+.+|.+++.+.+.
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~ 75 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLLRSVQA 75 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC-
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhccc
Confidence 46789999999999999999999999999999999997656667789999999999999999999999988653
No 21
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.35 E-value=1.2e-12 Score=97.41 Aligned_cols=76 Identities=14% Similarity=0.236 Sum_probs=66.6
Q ss_pred CCCcceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCCCCCCceEEEEcCCHHHHHHHHHHHHhhhhhcCC
Q 027432 94 FGASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIGP 170 (223)
Q Consensus 94 ~g~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~~~~ 170 (223)
.....+.++.||.+++|.|||+||++|++|+++||++|+|.+.. +.+++.|+|+|.++++++|+.+|.+++.+++.
T Consensus 13 l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g-~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 13 LEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG-APDPNCVTVTGLPENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp TTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT-CSCTTEEEEESCHHHHHHHHHHHHHHHHHHHT
T ss_pred hcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC-CCCCcEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 34467899999999999999999999999999999999996532 23468999999999999999999999987654
No 22
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.33 E-value=1.1e-12 Score=105.50 Aligned_cols=72 Identities=25% Similarity=0.324 Sum_probs=66.4
Q ss_pred ceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccC-CCCCCceEEEEcCCHHHHHHHHHHHHhhhhhcC
Q 027432 98 ATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDH-EADPNLRNIELEGSFEQIKQASAMVRELIVRIG 169 (223)
Q Consensus 98 ~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~-~~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~~~ 169 (223)
.+.+++||.+.+|.||||+|++|++|+++||++|+|.+. .++..+|.|+|+|+++++..|+.+|.+++.+..
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~ 75 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLKEEN 75 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhccc
Confidence 578999999999999999999999999999999999764 467789999999999999999999999998763
No 23
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.32 E-value=2.1e-12 Score=103.62 Aligned_cols=73 Identities=25% Similarity=0.378 Sum_probs=65.4
Q ss_pred ceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCC--CCCCceEEEEcCCHHHHHHHHHHHHhhhhhcCC
Q 027432 98 ATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHE--ADPNLRNIELEGSFEQIKQASAMVRELIVRIGP 170 (223)
Q Consensus 98 ~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~--~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~~~~ 170 (223)
.+.+++||.+.+|.||||+|++||+|+++||++|+|.+.. .+..+|.|+|+|+++++++|+.+|.+++.+.+.
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~ 76 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQ 76 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHHHHHHHHHHHHTTCSSS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhccC
Confidence 4789999999999999999999999999999999996432 345689999999999999999999999987653
No 24
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.32 E-value=1.2e-12 Score=106.86 Aligned_cols=73 Identities=32% Similarity=0.398 Sum_probs=64.8
Q ss_pred cceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCC--CCCCceEEEEcCCHHHHHHHHHHHHhhhhhcC
Q 027432 97 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHE--ADPNLRNIELEGSFEQIKQASAMVRELIVRIG 169 (223)
Q Consensus 97 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~--~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~~~ 169 (223)
..+.++.||.+++|.||||+|.+||+|+++|||+|+|.+.. ++..++.|+|+|+++++++|+.+|.+++.+.+
T Consensus 103 ~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 103 ANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp GGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred ceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhCC
Confidence 46889999999999999999999999999999999996543 34568999999999999999999999998743
No 25
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.30 E-value=1.1e-12 Score=105.06 Aligned_cols=71 Identities=27% Similarity=0.431 Sum_probs=64.8
Q ss_pred cceEEEEeccccccceecCCCcchhhhhhhcCCeEEecc-CCCCCCceEEEEcCCHHHHHHHHHHHHhhhhh
Q 027432 97 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRD-HEADPNLRNIELEGSFEQIKQASAMVRELIVR 167 (223)
Q Consensus 97 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~-~~~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~ 167 (223)
..+.++.||.+.+|.||||+|.+|++|+++|||+|+|.+ ..++..++.|+|+|++++++.|+.+|.+++.+
T Consensus 88 ~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 88 PVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp SEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 468899999999999999999999999999999999964 34566789999999999999999999999875
No 26
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.29 E-value=2.1e-12 Score=105.41 Aligned_cols=75 Identities=24% Similarity=0.381 Sum_probs=67.0
Q ss_pred CcceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccC---CCCCCceEEEEcCCHHHHHHHHHHHHhhhhhcCC
Q 027432 96 ASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDH---EADPNLRNIELEGSFEQIKQASAMVRELIVRIGP 170 (223)
Q Consensus 96 ~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~---~~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~~~~ 170 (223)
...+.+++||.+.+|.||||+|++|++|+++||++|+|.+. .++..+|.|+|+|+.+++.+|+.+|.+++.+...
T Consensus 4 ~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~~ 81 (178)
T 2anr_A 4 SQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQ 81 (178)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCCC
T ss_pred CCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhccCC
Confidence 45789999999999999999999999999999999999653 2456789999999999999999999999987543
No 27
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.29 E-value=2.6e-12 Score=104.50 Aligned_cols=69 Identities=33% Similarity=0.550 Sum_probs=61.6
Q ss_pred cceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCC---CCCCceEEEEcCCHHHHHHHHHHHHhhh
Q 027432 97 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHE---ADPNLRNIELEGSFEQIKQASAMVRELI 165 (223)
Q Consensus 97 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~---~~~~~r~v~I~G~~~~i~~A~~lI~~~i 165 (223)
..+.++.||.+.+|.||||+|.+||+|+++|||+|+|.+.. .+..++.|+|+|++++++.|+.+|.++|
T Consensus 103 ~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 103 LQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp -CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred cEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 46889999999999999999999999999999999996542 2356799999999999999999999875
No 28
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.29 E-value=1.8e-12 Score=97.96 Aligned_cols=71 Identities=17% Similarity=0.249 Sum_probs=63.4
Q ss_pred cceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCCCCCCceEEEEcCCHHHHHHHHHHHHhhhhhcC
Q 027432 97 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIG 169 (223)
Q Consensus 97 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~~~ 169 (223)
..+.++.||.+++|.|||+||++|++|+++||++|.|.+... ..+.|+|+|+.+++++|+.+|.+++.+.+
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~--~~~~V~I~G~~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL--QSDIIAITGLAANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT--TCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCC--CcceEEEEcCHHHHHHHHHHHHHHHhhHH
Confidence 368899999999999999999999999999999999976433 34699999999999999999999997654
No 29
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.28 E-value=2.8e-12 Score=103.10 Aligned_cols=74 Identities=26% Similarity=0.409 Sum_probs=64.5
Q ss_pred cceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccC-CCCCCc-eEEEEcCCHHHHHHHHHHHHhhhhhcCC
Q 027432 97 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDH-EADPNL-RNIELEGSFEQIKQASAMVRELIVRIGP 170 (223)
Q Consensus 97 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~-~~~~~~-r~v~I~G~~~~i~~A~~lI~~~i~~~~~ 170 (223)
..+.++.||.+.+|.||||+|.+|++|++.|||+|+|.+. .++..+ +.|+|+|++++++.|+.+|.+++.+...
T Consensus 84 ~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~~ 159 (163)
T 3krm_A 84 KLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKIRDILAQVKQ 159 (163)
T ss_dssp CEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEECHHHHHHHHHHHHHHHHHHTC
T ss_pred ceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999999999999999643 233344 5899999999999999999999988654
No 30
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=3.2e-13 Score=94.33 Aligned_cols=32 Identities=34% Similarity=0.611 Sum_probs=29.2
Q ss_pred cccccCcccccccCCCCCCCCCCcccccccCCC
Q 027432 28 VKSRMCNRLNSAEGCKFGDKCHFAHGEWELGKP 60 (223)
Q Consensus 28 ~kt~~C~~~~~~g~C~~g~~C~faH~~~el~~~ 60 (223)
.|++||++| ..|.|+||++|+||||++||+.+
T Consensus 18 ~k~~LC~~~-~~G~C~~G~~C~FAHG~~ELr~~ 49 (69)
T 2d9m_A 18 GYFSICDRY-MNGTCPEGNSCKFAHGNAELHEW 49 (69)
T ss_dssp SCCSBCHHH-HHSCCSSCSSCSSBSSHHHHHHH
T ss_pred CCcccCccc-CcCCCCCCCccCCcCCHHHHhhH
Confidence 477999999 56899999999999999999985
No 31
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.21 E-value=6.5e-12 Score=100.66 Aligned_cols=70 Identities=27% Similarity=0.389 Sum_probs=63.8
Q ss_pred cceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCCCCCCceEEEEcCCHHHHHHHHHHHHhhhhhc
Q 027432 97 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRI 168 (223)
Q Consensus 97 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~~ 168 (223)
..+.+++||.+.+|.||||+|++|++|+++||++|+|.+. +..+|.|+|+|+.+++.+|+.+|.+++.+.
T Consensus 4 ~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~ 73 (160)
T 2jzx_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEED 73 (160)
T ss_dssp EEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHHHHHHHHHHHHHHHHhh
Confidence 3578999999999999999999999999999999999764 356899999999999999999999998764
No 32
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.4e-12 Score=91.13 Aligned_cols=30 Identities=40% Similarity=0.951 Sum_probs=28.6
Q ss_pred ccccCccccCCcCCCCCCCccccCccccCc
Q 027432 191 KTKLCGNFAKGSCTFGDRCHFAHGAAELRK 220 (223)
Q Consensus 191 kt~~C~~~~~g~C~~g~~C~faH~~~elr~ 220 (223)
|++||++|.+|.|+||++|+||||++|||.
T Consensus 19 k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~ 48 (69)
T 2d9m_A 19 YFSICDRYMNGTCPEGNSCKFAHGNAELHE 48 (69)
T ss_dssp CCSBCHHHHHSCCSSCSSCSSBSSHHHHHH
T ss_pred CcccCcccCcCCCCCCCccCCcCCHHHHhh
Confidence 669999999999999999999999999986
No 33
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.12 E-value=3.6e-11 Score=95.64 Aligned_cols=70 Identities=21% Similarity=0.359 Sum_probs=59.2
Q ss_pred eEEEEeccccccceecCCCcchhhhhhhcCC-eEEeccC-CCC--CCc--eEEEEcCCHHHHHHHHHHHHhhhhhc
Q 027432 99 TAKISVDASLAGAIIGKGGVNSKQICRQTGA-KLSIRDH-EAD--PNL--RNIELEGSFEQIKQASAMVRELIVRI 168 (223)
Q Consensus 99 t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa-~I~I~~~-~~~--~~~--r~v~I~G~~~~i~~A~~lI~~~i~~~ 168 (223)
...+.||.+.+|++|||+|.||+.|++.||+ +|.|... +.. ..+ +.|+|+|++++++.|+.+|.+.|...
T Consensus 68 e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l~~l 143 (144)
T 2qnd_A 68 EDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHLNYL 143 (144)
T ss_dssp EEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHTC
T ss_pred eEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 3789999999999999999999999999997 8999532 221 123 46999999999999999999998753
No 34
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.10 E-value=1e-10 Score=86.93 Aligned_cols=76 Identities=16% Similarity=0.269 Sum_probs=67.3
Q ss_pred CCCCcceEEEEeccccccceecCCCcchhhhhhhc-CCeEEeccCCCCCCceEEEEcCCHHHHHHHHHHHHhhhhhcCC
Q 027432 93 SFGASATAKISVDASLAGAIIGKGGVNSKQICRQT-GAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIGP 170 (223)
Q Consensus 93 s~g~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~S-Ga~I~I~~~~~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~~~~ 170 (223)
......+..+.||.++++.|||+||.+|++|++++ |++|.|.+. +...+.|+|.|..+++++|+.+|.+++.+.+.
T Consensus 12 e~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~--g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~e~ 88 (95)
T 2ctj_A 12 DLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE--GSGSDTVVIRGPSSDVEKAKKQLLHLAEEKQT 88 (95)
T ss_dssp CCCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT--TTTCCEEEEESCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC--CCCcceEEEEcCHHHHHHHHHHHHHHHhhhhh
Confidence 45567789999999999999999999999999999 999999653 23467899999999999999999999988764
No 35
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.04 E-value=1.3e-10 Score=86.90 Aligned_cols=26 Identities=19% Similarity=0.450 Sum_probs=23.7
Q ss_pred CccccccCcccccccCCCCCCCCCCcc
Q 027432 26 TVVKSRMCNRLNSAEGCKFGDKCHFAH 52 (223)
Q Consensus 26 ~~~kt~~C~~~~~~g~C~~g~~C~faH 52 (223)
..+|+.+|++|. .|.|.+|++|.|+|
T Consensus 9 ~~~k~~lC~~f~-~G~C~~G~~C~f~H 34 (98)
T 2cqe_A 9 LPKKRELCKFYI-TGFCARAENCPYMH 34 (98)
T ss_dssp CSCCCSBCTTTT-TTCCSCSTTCSSBS
T ss_pred CCCCCccCcccc-cCcCCCCCCCCCCC
Confidence 358999999996 69999999999999
No 36
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.6e-10 Score=82.70 Aligned_cols=27 Identities=33% Similarity=0.651 Sum_probs=25.1
Q ss_pred CCccccccCcccccccCCCCCCCCCCcc
Q 027432 25 PTVVKSRMCNRLNSAEGCKFGDKCHFAH 52 (223)
Q Consensus 25 ~~~~kt~~C~~~~~~g~C~~g~~C~faH 52 (223)
...+|+.+|++|.. |.|.+|++|.|+|
T Consensus 5 ~~~~k~~~C~~fl~-G~C~~G~~C~fsH 31 (77)
T 2d9n_A 5 SSGEKTVVCKHWLR-GLCKKGDQCEFLH 31 (77)
T ss_dssp CSCCTTSBCHHHHT-TCCSCTTSSSSBC
T ss_pred CCCCcceeCHhHcc-CcCCCCCCCCCcc
Confidence 35789999999999 9999999999999
No 37
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.99 E-value=5.6e-10 Score=83.97 Aligned_cols=68 Identities=22% Similarity=0.334 Sum_probs=61.3
Q ss_pred ceEEEEeccccccceecCCCcchhhhhhh-cCCeEEeccCCCCCCceEEEEcCCHHHHHHHHHHHHhhhhhcCC
Q 027432 98 ATAKISVDASLAGAIIGKGGVNSKQICRQ-TGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIGP 170 (223)
Q Consensus 98 ~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~-SGa~I~I~~~~~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~~~~ 170 (223)
.+.+|.||..+.+.|||++|++|++|+++ ++++|.+.+ .++.|+|.|+.++|++|+..|..++.+...
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~-----~~~~ItI~G~~~~V~~a~~~I~~~v~el~~ 95 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE-----GEDKITLEGPTEDVSVAQEQIEGMVKDLIN 95 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS-----SSCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC-----CCCEEEEECCHHHHHHHHHHHHHHHHHHHh
Confidence 68899999999999999999999999997 589999876 356899999999999999999999987553
No 38
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.98 E-value=2.7e-10 Score=84.02 Aligned_cols=71 Identities=21% Similarity=0.294 Sum_probs=62.4
Q ss_pred CCcceEEEEeccccccceecCCCcchhhhhhhcCCe-EEeccCCCCCCceEEEEcC-CHHHHHHHHHHHHhhhhhcCC
Q 027432 95 GASATAKISVDASLAGAIIGKGGVNSKQICRQTGAK-LSIRDHEADPNLRNIELEG-SFEQIKQASAMVRELIVRIGP 170 (223)
Q Consensus 95 g~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~-I~I~~~~~~~~~r~v~I~G-~~~~i~~A~~lI~~~i~~~~~ 170 (223)
......++.||.+++|.|||+||.+|++|+++||++ |.|.+. +..|+|.| +.+++++|+.+|..+-.....
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~ed-----dG~V~I~g~~~ea~~~A~~~I~~ie~~~~v 84 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDED-----TGTFRIYGESADAVKKARGFLEFVEDFIQV 84 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHSCCCCCCCC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcC-----CCEEEEEECCHHHHHHHHHHHHhhheEEec
Confidence 345778999999999999999999999999999998 999642 47899999 899999999999988776554
No 39
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.91 E-value=5.7e-10 Score=79.19 Aligned_cols=34 Identities=50% Similarity=1.152 Sum_probs=31.8
Q ss_pred CcccccccCcccc-CCcCCCCCCCccccCccccCc
Q 027432 187 SSNFKTKLCGNFA-KGSCTFGDRCHFAHGAAELRK 220 (223)
Q Consensus 187 ~~~~kt~~C~~~~-~g~C~~g~~C~faH~~~elr~ 220 (223)
..+|||+||++|. .|.|++|++|+|||+.+|||.
T Consensus 7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~ 41 (77)
T 1m9o_A 7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQ 41 (77)
T ss_dssp SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGG
T ss_pred CCCccchhCHHhhhCCCcCCCCCccCCCCChhhcc
Confidence 4789999999997 899999999999999999985
No 40
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.88 E-value=5.4e-10 Score=78.50 Aligned_cols=31 Identities=26% Similarity=0.693 Sum_probs=28.1
Q ss_pred ccccccCccccCCcCCCCCCCccccCccccCc
Q 027432 189 NFKTKLCGNFAKGSCTFGDRCHFAHGAAELRK 220 (223)
Q Consensus 189 ~~kt~~C~~~~~g~C~~g~~C~faH~~~elr~ 220 (223)
..++.+|.+|++|.|..+ +|.|+|...+|+.
T Consensus 39 ~~~~~vC~~flkG~C~r~-~C~y~H~~~~L~~ 69 (70)
T 3d2q_A 39 DNTVTVCMDYIKGRCSRE-KCKYFHPPAHLQA 69 (70)
T ss_dssp TTEEEBCHHHHTTCCCCT-TCCSBCCCHHHHC
T ss_pred CCcceeccccCcCCCCCC-CcCeeCCHHHHhc
Confidence 457889999999999999 9999999999975
No 41
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.81 E-value=1.2e-09 Score=77.12 Aligned_cols=28 Identities=32% Similarity=0.578 Sum_probs=25.5
Q ss_pred CCCccccccCcccccccCCCCCCCCCCcc
Q 027432 24 GPTVVKSRMCNRLNSAEGCKFGDKCHFAH 52 (223)
Q Consensus 24 ~~~~~kt~~C~~~~~~g~C~~g~~C~faH 52 (223)
....+|+.+|++|.. |.|.+|++|.|+|
T Consensus 10 ~~~~~k~~vCk~fl~-G~C~~G~~C~fsH 37 (72)
T 2rhk_C 10 HMSGEKTVVCKHWLR-GLCKKGDQCEFLH 37 (72)
T ss_dssp SSSCCCCSBCHHHHT-TCCCCGGGSSSBC
T ss_pred cCCCCcCeeCHHHhc-CCCCCCCCCCCcc
Confidence 346789999999999 9999999999999
No 42
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.77 E-value=1.1e-08 Score=80.27 Aligned_cols=74 Identities=20% Similarity=0.367 Sum_probs=60.3
Q ss_pred CCcceEEEEeccc------cccceecCCCcchhhhhhhcCCeEEeccCCC----------------CCCceEEEEcC-CH
Q 027432 95 GASATAKISVDAS------LAGAIIGKGGVNSKQICRQTGAKLSIRDHEA----------------DPNLRNIELEG-SF 151 (223)
Q Consensus 95 g~~~t~~i~VP~~------~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~----------------~~~~r~v~I~G-~~ 151 (223)
....+.+|.||.+ ++|.|||.+|.+||+|+++|||+|.|....+ ...+--|.|++ +.
T Consensus 4 ~~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~ 83 (131)
T 1k1g_A 4 ATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM 83 (131)
T ss_dssp -CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH
T ss_pred CceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCH
Confidence 3456889999988 9999999999999999999999999964211 11245677777 69
Q ss_pred HHHHHHHHHHHhhhhhc
Q 027432 152 EQIKQASAMVRELIVRI 168 (223)
Q Consensus 152 ~~i~~A~~lI~~~i~~~ 168 (223)
+.+++|+.+|.+++...
T Consensus 84 e~~~~A~~~I~~ll~~~ 100 (131)
T 1k1g_A 84 ENVKKAVEQIRNILKQG 100 (131)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999999763
No 43
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=1.4e-08 Score=78.44 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=57.9
Q ss_pred cceEEEEeccc-------cccceecCCCcchhhhhhhcCCeEEeccCCCC----------CCceEEEEc-CCHHHHHHHH
Q 027432 97 SATAKISVDAS-------LAGAIIGKGGVNSKQICRQTGAKLSIRDHEAD----------PNLRNIELE-GSFEQIKQAS 158 (223)
Q Consensus 97 ~~t~~i~VP~~-------~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~----------~~~r~v~I~-G~~~~i~~A~ 158 (223)
..+.+|+||.+ ++|.|||.+|.+||+|+++|||+|.|....+. ..+-.|.|+ .+.+++++|+
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~ 90 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAK 90 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHH
Confidence 56788888875 78999999999999999999999999632110 122356665 4799999999
Q ss_pred HHHHhhhhhcC
Q 027432 159 AMVRELIVRIG 169 (223)
Q Consensus 159 ~lI~~~i~~~~ 169 (223)
.+|.+++....
T Consensus 91 ~~Ie~Ll~~v~ 101 (119)
T 2yqr_A 91 KLCENLLQTVH 101 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhchH
Confidence 99999997643
No 44
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=98.70 E-value=1.3e-08 Score=92.48 Aligned_cols=71 Identities=17% Similarity=0.336 Sum_probs=62.2
Q ss_pred CCcceEEEEeccccccceecCCC--cchhhhhhhcCCeEEeccCC-----CCCCceEEEEcCCHHHHHHHHHHHHhhh
Q 027432 95 GASATAKISVDASLAGAIIGKGG--VNSKQICRQTGAKLSIRDHE-----ADPNLRNIELEGSFEQIKQASAMVRELI 165 (223)
Q Consensus 95 g~~~t~~i~VP~~~vG~IIGkgG--~~Ik~I~~~SGa~I~I~~~~-----~~~~~r~v~I~G~~~~i~~A~~lI~~~i 165 (223)
....|.++.||....+.||||+| +||++|+++||++|++.+.+ .......|+|+|..++|++|+..|.+++
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l~ 104 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNC 104 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHSC
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhcC
Confidence 45678999999999999999999 99999999999999996654 1133478999999999999999999864
No 45
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=3.2e-09 Score=79.35 Aligned_cols=31 Identities=26% Similarity=0.670 Sum_probs=27.2
Q ss_pred ccccccCccccCCcCCCCCCCccccCccccCc
Q 027432 189 NFKTKLCGNFAKGSCTFGDRCHFAHGAAELRK 220 (223)
Q Consensus 189 ~~kt~~C~~~~~g~C~~g~~C~faH~~~elr~ 220 (223)
..++.+|.+|++|.|.++ +|+|.|...+|+.
T Consensus 53 ~~~~~vC~~flkG~C~r~-~C~y~H~~~~l~~ 83 (98)
T 2e5s_A 53 DNTVTVCMDYIKGRCMRE-KCKYFHPPAHLQA 83 (98)
T ss_dssp TCEEEBCHHHHHTCCCCT-TCCSBCCCHHHHH
T ss_pred CCccccchhhccCCCCCC-CcCccCChHHHHH
Confidence 347789999999999999 8999999888763
No 46
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.43 E-value=7.8e-08 Score=81.49 Aligned_cols=56 Identities=25% Similarity=0.367 Sum_probs=51.0
Q ss_pred ccccceecCCCcchhhhhhhcCCeEEeccCCCCCCceEEEEcCCHHHHHHHHHHHHhhhhhcC
Q 027432 107 SLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIG 169 (223)
Q Consensus 107 ~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~~~ 169 (223)
..+|.||||+|.+|+.|++.||++|+|.+ +.|+|.|++++++.|+.+|.++|....
T Consensus 138 r~~GriIGk~G~tik~ie~~Tg~~I~v~~-------~~v~i~G~~~~i~~A~~~i~~li~g~~ 193 (219)
T 2e3u_A 138 RVRGRIIGRKGRTRQIIEEMSGASVSVYG-------KTVAIIGNPIQIEIAKTAIEKLARGSP 193 (219)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHCCEEEEET-------TEEEEEECHHHHHHHHHHHHHHHTTCC
T ss_pred hhhheeECCCchHHHHHHHHhCceEEECC-------eEEEEEeCHHHHHHHHHHHHHHHcCCC
Confidence 37899999999999999999999999964 579999999999999999999996543
No 47
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.42 E-value=1.2e-07 Score=80.39 Aligned_cols=66 Identities=17% Similarity=0.222 Sum_probs=57.4
Q ss_pred cceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCCCCCCceEEEEcCC-----HHHHHHHHHHHHhhhhh
Q 027432 97 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGS-----FEQIKQASAMVRELIVR 167 (223)
Q Consensus 97 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~~~~r~v~I~G~-----~~~i~~A~~lI~~~i~~ 167 (223)
..+.++.||.+.+|.|||++|.+|+.|+++||++|.|... ++.|+|.++ ++++++|+.+|.+++..
T Consensus 33 P~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~-----~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg 103 (219)
T 2e3u_A 33 KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE-----TGEVWITSTKETEDPLAVWKARDIVLAIGRG 103 (219)
T ss_dssp CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT-----TCEEEEEECTTCCSHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC-----CCEEEEecCCCCCCHHHHHHHHHHHHHHhcc
Confidence 3577999999999999999999999999999999999632 456777764 79999999999998853
No 48
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.37 E-value=1.7e-07 Score=74.19 Aligned_cols=71 Identities=25% Similarity=0.352 Sum_probs=53.9
Q ss_pred ceEEEEecccc------ccceecCCCcchhhhhhhcCCeEEeccCCCC-----------------CCc-eEEEEcC-CH-
Q 027432 98 ATAKISVDASL------AGAIIGKGGVNSKQICRQTGAKLSIRDHEAD-----------------PNL-RNIELEG-SF- 151 (223)
Q Consensus 98 ~t~~i~VP~~~------vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~-----------------~~~-r~v~I~G-~~- 151 (223)
-+.+|.||.+. +|.|||.+|.++|+|+++|||+|.|....+. ..+ =-|.|++ ++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 36788898655 9999999999999999999999999643211 011 2456666 34
Q ss_pred ----HHHHHHHHHHHhhhhhc
Q 027432 152 ----EQIKQASAMVRELIVRI 168 (223)
Q Consensus 152 ----~~i~~A~~lI~~~i~~~ 168 (223)
..+++|+.+|..++...
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p~ 102 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVPA 102 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHHHHCCCC
Confidence 38999999999998643
No 49
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=98.35 E-value=7.7e-07 Score=69.79 Aligned_cols=69 Identities=13% Similarity=0.159 Sum_probs=62.7
Q ss_pred cceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCCCCCCceEEEEcCCHHHHHHHHHHHHhhhh
Q 027432 97 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIV 166 (223)
Q Consensus 97 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~~~~r~v~I~G~~~~i~~A~~lI~~~i~ 166 (223)
.....+.|.+.++++|||++|+.|+.|+..|.+.|+|..-++ .++..|+|.|++..-..|+.+|..+..
T Consensus 55 ~dPlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s-~g~tEVtIfG~~~~Q~rak~MI~sLA~ 123 (140)
T 3v69_A 55 EDPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP-ERRAEIWIFGPPPFRRDVDRMLTDLAH 123 (140)
T ss_dssp SSCEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT-TSCEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC-CCcEEEEEECCHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999976655 378999999999999999999998764
No 50
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=98.32 E-value=4e-07 Score=75.57 Aligned_cols=67 Identities=21% Similarity=0.328 Sum_probs=59.6
Q ss_pred eEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCCCCCCceEEEEc-----CCHHHHHHHHHHHHhhhhhcCC
Q 027432 99 TAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELE-----GSFEQIKQASAMVRELIVRIGP 170 (223)
Q Consensus 99 t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~~~~r~v~I~-----G~~~~i~~A~~lI~~~i~~~~~ 170 (223)
...+.||...+|.|||++|++++.|++++|++|+++. .++.|+|. |++.++.+|..+|.++...+++
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~-----~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~ 76 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT-----ENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPP 76 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET-----TTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCH
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc-----CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCH
Confidence 4689999999999999999999999999999999963 35677877 9999999999999998876654
No 51
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=98.29 E-value=8.4e-07 Score=80.54 Aligned_cols=70 Identities=16% Similarity=0.255 Sum_probs=58.0
Q ss_pred cceEEEEeccccccceecCCCcc--hhhhhhhcCCeEEeccCCC----CCCceEEEEcCCHHHHHHHHHHHHhhhh
Q 027432 97 SATAKISVDASLAGAIIGKGGVN--SKQICRQTGAKLSIRDHEA----DPNLRNIELEGSFEQIKQASAMVRELIV 166 (223)
Q Consensus 97 ~~t~~i~VP~~~vG~IIGkgG~~--Ik~I~~~SGa~I~I~~~~~----~~~~r~v~I~G~~~~i~~A~~lI~~~i~ 166 (223)
..+..+.|+...+..||||+|.+ |++|+++||++|.+.+... ......|+|+|+.++|..|+..|.++|.
T Consensus 185 ~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~e~V~~Ark~I~~lLP 260 (376)
T 3n89_A 185 NFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNIDNVLKARRYIMDLLP 260 (376)
T ss_dssp CEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCHHHHHHHHHHHHHTSE
T ss_pred ceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCHHHHHHHHHHHHhhCC
Confidence 46788999999999999999955 5999999999999964322 1234789999999999999999999984
No 52
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=2.6e-07 Score=65.77 Aligned_cols=37 Identities=32% Similarity=0.570 Sum_probs=31.0
Q ss_pred CCCCcccccccCccccCCcCCCCCCCccccCccccCc
Q 027432 184 HPLSSNFKTKLCGNFAKGSCTFGDRCHFAHGAAELRK 220 (223)
Q Consensus 184 ~~~~~~~kt~~C~~~~~g~C~~g~~C~faH~~~elr~ 220 (223)
+|....+|+.+|++|+.|.|..|++|.|+|..++.+.
T Consensus 2 ~p~~~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~~~~ 38 (77)
T 2d9n_A 2 SSGSSGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKM 38 (77)
T ss_dssp CCCCSCCTTSBCHHHHTTCCSCTTSSSSBCSCCTTTS
T ss_pred cCCCCCCcceeCHhHccCcCCCCCCCCCccccccCcC
Confidence 3445778999999999999999999999998876544
No 53
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.24 E-value=4.1e-07 Score=65.83 Aligned_cols=27 Identities=26% Similarity=0.647 Sum_probs=24.2
Q ss_pred CCccccccCcccccccCCCCCC-CCCCcc
Q 027432 25 PTVVKSRMCNRLNSAEGCKFGD-KCHFAH 52 (223)
Q Consensus 25 ~~~~kt~~C~~~~~~g~C~~g~-~C~faH 52 (223)
+...|...|+.|.. |.|..|| .|+|+|
T Consensus 4 ~~~~~~~VCr~Flr-G~C~r~d~~C~f~H 31 (83)
T 3d2n_A 4 TKWLTLEVCREFQR-GTCSRPDTECKFAH 31 (83)
T ss_dssp CGGGEEEBCTTGGG-TCCCSCTTTCSSBC
T ss_pred cccccchhcHHHhc-CCCCCCCCCCCCcC
Confidence 34578899999999 9999997 999999
No 54
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.12 E-value=1.6e-06 Score=68.60 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=47.3
Q ss_pred cceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCCCCCCceEEEEcCCHHHHHHHHHHH
Q 027432 97 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMV 161 (223)
Q Consensus 97 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~~~~r~v~I~G~~~~i~~A~~lI 161 (223)
..+.++.||.+.+|++||++|++|+.|++++| |.+-.... ..++.+...++++.+.+|+.++
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~~-~~~~~i~~~~~p~~v~~~~~~l 64 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLDE-DTCTFHIYGEDQDAVKKARSFL 64 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEET-TTTEEEEEESSHHHHHHHHHHH
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccCC-CchheeeccCCHHHHHHHHHhh
Confidence 45789999999999999999999999999999 55422111 2345555566899999987654
No 55
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=98.11 E-value=9.5e-07 Score=73.32 Aligned_cols=54 Identities=22% Similarity=0.421 Sum_probs=49.8
Q ss_pred ccccceecCCCcchhhhhhhcCCeEEeccCCCCCCceEEEEcCCHHHHHHHHHHHHhhhhh
Q 027432 107 SLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVR 167 (223)
Q Consensus 107 ~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~~~~r~v~I~G~~~~i~~A~~lI~~~i~~ 167 (223)
..+|.||||+|.+++.|++.||++|.|.+ +.|.|.|++++++.|+..|.++|..
T Consensus 107 r~~GrIIGk~G~tik~iE~~Tg~~I~v~~-------~~v~i~G~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 107 RIKGRIIGEGGRARRTIEEMTDTYINVGE-------YEVAIIGDYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHTCEEEECS-------SEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred HHhhheeCCCccHHHHHHHHHCceEEEcC-------CEEEEEeChHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999965 3799999999999999999999964
No 56
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.08 E-value=1.5e-06 Score=83.74 Aligned_cols=63 Identities=21% Similarity=0.324 Sum_probs=54.7
Q ss_pred cceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCCCCCCceEEEEcCC-HHHHHHHHHHHHhhh
Q 027432 97 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGS-FEQIKQASAMVRELI 165 (223)
Q Consensus 97 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~~~~r~v~I~G~-~~~i~~A~~lI~~~i 165 (223)
....++.||.+++|.|||+||.+||.|+++||++|.|.+ +..|.|.+. .+.+++|+.+|.+++
T Consensus 566 p~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d------~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 566 PVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD------EETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp CEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS------SSEEEEEESSHHHHHHHHHHTTC--
T ss_pred CeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC------CcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999999999999974 367888884 789999999998875
No 57
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=97.98 E-value=4e-06 Score=62.35 Aligned_cols=27 Identities=30% Similarity=0.706 Sum_probs=23.5
Q ss_pred cccccccCccccCCcCCCCCCCccccC
Q 027432 188 SNFKTKLCGNFAKGSCTFGDRCHFAHG 214 (223)
Q Consensus 188 ~~~kt~~C~~~~~g~C~~g~~C~faH~ 214 (223)
..+||.+|++|..|.|.+|++|+|+|.
T Consensus 9 ~~~k~~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 9 LPKKRELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp CSCCCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred CCCCCccCcccccCcCCCCCCCCCCCC
Confidence 457899999998899999999999997
No 58
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=97.83 E-value=4.3e-06 Score=58.77 Aligned_cols=34 Identities=32% Similarity=0.626 Sum_probs=28.6
Q ss_pred CcccccccCccccCCcCCCCCCCccccCccccCc
Q 027432 187 SSNFKTKLCGNFAKGSCTFGDRCHFAHGAAELRK 220 (223)
Q Consensus 187 ~~~~kt~~C~~~~~g~C~~g~~C~faH~~~elr~ 220 (223)
....|+.+|++|+.|.|..|++|.|+|..+..+.
T Consensus 11 ~~~~k~~vCk~fl~G~C~~G~~C~fsH~~~~~~~ 44 (72)
T 2rhk_C 11 MSGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKM 44 (72)
T ss_dssp SSCCCCSBCHHHHTTCCCCGGGSSSBCSCCTTSC
T ss_pred CCCCcCeeCHHHhcCCCCCCCCCCCccccccccC
Confidence 3567899999999999999999999998765443
No 59
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=97.81 E-value=7.5e-06 Score=59.92 Aligned_cols=28 Identities=25% Similarity=0.610 Sum_probs=24.0
Q ss_pred ccccCccccCCcCCCCCCCccccCccccC
Q 027432 191 KTKLCGNFAKGSCTFGDRCHFAHGAAELR 219 (223)
Q Consensus 191 kt~~C~~~~~g~C~~g~~C~faH~~~elr 219 (223)
+...|.+|.+|.|..+ .|+|.|....|.
T Consensus 50 ~~~vC~dflkG~C~r~-~Cky~H~~~hl~ 77 (89)
T 2rpp_A 50 RVIACFDSLKGRCSRE-NCKYLHPPTHLK 77 (89)
T ss_dssp BEEBCHHHHHTCCCCT-TCCSBCCCHHHH
T ss_pred ceeeehhhhhCcCCCC-CcceecCHHHHH
Confidence 4567999999999998 899999877664
No 60
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.62 E-value=1.3e-05 Score=78.26 Aligned_cols=68 Identities=22% Similarity=0.316 Sum_probs=12.0
Q ss_pred ceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCCCCCCceEEEEcC-CHHHHHHHHHHHHhhhhhcCCC
Q 027432 98 ATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEG-SFEQIKQASAMVRELIVRIGPA 171 (223)
Q Consensus 98 ~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~~~~r~v~I~G-~~~~i~~A~~lI~~~i~~~~~~ 171 (223)
...++.||.++++.|||+||.+||+|.++||++|.|.+ +..|.|.+ +.+.+++|+.+|..++.+...+
T Consensus 570 ~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d------dG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG 638 (726)
T 4aid_A 570 KIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND------DGVVKVSASDGAKIKAAIDWIKSITDEAEVG 638 (726)
T ss_dssp C-------------------------------------------------CCSCHHHHHHHHHC-----------
T ss_pred eEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC------CceEEEEeCCHHHHHHHHHHHHHHhhhhcCC
Confidence 45678999999999999999999999999999999965 35577776 5999999999999999876654
No 61
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=97.38 E-value=4.3e-05 Score=53.18 Aligned_cols=28 Identities=32% Similarity=0.899 Sum_probs=25.1
Q ss_pred ccccCccccCCcCCCCC-CCccccCcccc
Q 027432 191 KTKLCGNFAKGSCTFGD-RCHFAHGAAEL 218 (223)
Q Consensus 191 kt~~C~~~~~g~C~~g~-~C~faH~~~el 218 (223)
|.++|++|+.|.|..|+ .|.|+|..+++
T Consensus 5 k~~vC~~f~~G~C~rg~~~C~f~H~~~~~ 33 (70)
T 3d2q_A 5 RLEVCREYQRGNCNRGENDCRFAHPADST 33 (70)
T ss_dssp EEEBCHHHHTTCCSSCTTTCSSBCCCTTS
T ss_pred cchhCHHHhcCCCCCCCCCCCCccCcccc
Confidence 67899999999999999 59999987764
No 62
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.15 E-value=9.8e-05 Score=54.82 Aligned_cols=32 Identities=34% Similarity=0.748 Sum_probs=28.1
Q ss_pred CcccccccCccccCCcCCCCC-CCccccCcccc
Q 027432 187 SSNFKTKLCGNFAKGSCTFGD-RCHFAHGAAEL 218 (223)
Q Consensus 187 ~~~~kt~~C~~~~~g~C~~g~-~C~faH~~~el 218 (223)
....|.++|++|+.|.|..|+ .|+|+|..+++
T Consensus 15 ~~~~k~~VCr~FlrG~C~rgd~~C~FsH~~~~~ 47 (98)
T 2e5s_A 15 LRTDKLEVCREFQRGNCARGETDCRFAHPADST 47 (98)
T ss_dssp CCSSEEEBCSHHHHTCCSSHHHHCSSBCCSSCC
T ss_pred cChhhhhhhHHHhcCcCCCCCCCCCCcCCchhc
Confidence 355688999999999999999 89999998765
No 63
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=97.13 E-value=0.0001 Score=47.77 Aligned_cols=28 Identities=18% Similarity=0.513 Sum_probs=25.9
Q ss_pred ccccccCcccccccCCCCCCCCCCcccc
Q 027432 27 VVKSRMCNRLNSAEGCKFGDKCHFAHGE 54 (223)
Q Consensus 27 ~~kt~~C~~~~~~g~C~~g~~C~faH~~ 54 (223)
..+|.+|..|...|.|++|.+|.|.|..
T Consensus 17 ~~~~~iC~~FSayGwCp~G~~Cp~SHDi 44 (50)
T 2fc6_A 17 PHPTSICDNFSAYGWCPLGPQCPQSHDI 44 (50)
T ss_dssp CCCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred ccccchhhhccccccCCCCCCCCccccC
Confidence 3789999999999999999999999954
No 64
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=96.97 E-value=0.00038 Score=50.08 Aligned_cols=30 Identities=30% Similarity=0.771 Sum_probs=23.7
Q ss_pred cccccccCccccCCcCCCCC-CCccccCccc
Q 027432 188 SNFKTKLCGNFAKGSCTFGD-RCHFAHGAAE 217 (223)
Q Consensus 188 ~~~kt~~C~~~~~g~C~~g~-~C~faH~~~e 217 (223)
...|..+|++|+.|.|..+| .|+|+|....
T Consensus 5 ~~~~~~VCr~FlrG~C~r~d~~C~f~H~~~~ 35 (83)
T 3d2n_A 5 KWLTLEVCREFQRGTCSRPDTECKFAHPSKS 35 (83)
T ss_dssp GGGEEEBCTTGGGTCCCSCTTTCSSBCCCTT
T ss_pred ccccchhcHHHhcCCCCCCCCCCCCcCCCcc
Confidence 44577888888888888886 8888887653
No 65
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=96.39 E-value=0.00076 Score=49.16 Aligned_cols=30 Identities=30% Similarity=0.782 Sum_probs=25.7
Q ss_pred cccccccCccccCCcCCCCC-CCccccCccc
Q 027432 188 SNFKTKLCGNFAKGSCTFGD-RCHFAHGAAE 217 (223)
Q Consensus 188 ~~~kt~~C~~~~~g~C~~g~-~C~faH~~~e 217 (223)
...+.++|+.|+.|.|..++ .|+|+|-.+.
T Consensus 13 ~~~~~~VCrdFlrG~C~r~d~~CrfsH~~~~ 43 (89)
T 2rpp_A 13 KWLTLEVCRQFQRGTCSRSDEECKFAHPPKS 43 (89)
T ss_dssp SSSEECBCHHHHHTCCCCCTTTSSSBCCCSS
T ss_pred CcchhhhchHHhcCCCCCCCCCCCCcCCCcc
Confidence 34567899999999999998 9999997654
No 66
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=96.15 E-value=0.0017 Score=42.02 Aligned_cols=28 Identities=32% Similarity=0.771 Sum_probs=25.2
Q ss_pred ccccccCcccc-CCcCCCCCCCccccCcc
Q 027432 189 NFKTKLCGNFA-KGSCTFGDRCHFAHGAA 216 (223)
Q Consensus 189 ~~kt~~C~~~~-~g~C~~g~~C~faH~~~ 216 (223)
..+|.+|+.|. -|.|++|.+|.|.|..+
T Consensus 17 ~~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 17 PHPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred ccccchhhhccccccCCCCCCCCccccCC
Confidence 46899999999 79999999999999764
No 67
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=95.94 E-value=0.0012 Score=64.47 Aligned_cols=67 Identities=22% Similarity=0.372 Sum_probs=0.0
Q ss_pred ceEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCCCCCCceEEEEcC-CHHHHHHHHHHHHhhhhhcCC
Q 027432 98 ATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEG-SFEQIKQASAMVRELIVRIGP 170 (223)
Q Consensus 98 ~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~~~~r~v~I~G-~~~~i~~A~~lI~~~i~~~~~ 170 (223)
....+.||.++++.|||+||.+|+.|.+++|+.|.|.+ +..|.|++ +.+.+++|..+|..++.+...
T Consensus 560 ~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~------dg~v~I~~~~~~~~~~a~~~i~~i~~~~~v 627 (723)
T 3cdi_A 560 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED------DGTVKIAATDGEKAKHAIRRIEEITAEIEV 627 (723)
T ss_dssp --------------------------------------------------------------------------
T ss_pred eEEEEEECHHHhcccccccceeeeeeehhhCceEEecC------CccEEEecCCHHHHHHHHHHHHHHhhhhhc
Confidence 45678899999999999999999999999999998864 34566665 577888898888887765554
No 68
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=95.45 E-value=0.0014 Score=64.42 Aligned_cols=61 Identities=21% Similarity=0.271 Sum_probs=21.1
Q ss_pred eEEEEeccccccceecCCCcchhhhhhhcCCeEEeccCCCCCCceEEEEcC-CHHHHHHHHHHHHhhh
Q 027432 99 TAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEG-SFEQIKQASAMVRELI 165 (223)
Q Consensus 99 t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~~~~r~v~I~G-~~~~i~~A~~lI~~~i 165 (223)
...+.||.+++|.|||++|.+||+|.+++|+.|.|.+ +..|.|+. +.+.++.|+.+|..+.
T Consensus 599 ~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 599 IITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CCCC------------------CTTCCCCCSCC--------------CCCBSSHHHHCC---------
T ss_pred eEEEEEChHHeehcccccceeeehhhHhhCCEEEecC------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 3457899999999999999999999999999998864 35567766 5778888887877766
No 69
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=91.41 E-value=0.11 Score=43.71 Aligned_cols=21 Identities=29% Similarity=0.945 Sum_probs=17.7
Q ss_pred cCccccCCcCCCCCCCccccCc
Q 027432 194 LCGNFAKGSCTFGDRCHFAHGA 215 (223)
Q Consensus 194 ~C~~~~~g~C~~g~~C~faH~~ 215 (223)
+|++|..|.|+| .+|.=+|..
T Consensus 177 IC~~Fl~G~C~f-~~CkRsH~~ 197 (229)
T 3u9g_A 177 ICEHFTRGNCSY-LNCLRSHNL 197 (229)
T ss_dssp SCHHHHTTCCCC-SSCSSCCCT
T ss_pred ccchhhcCCcCC-CCccCccCc
Confidence 588888899998 689888865
No 70
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=90.91 E-value=0.04 Score=46.80 Aligned_cols=22 Identities=41% Similarity=0.946 Sum_probs=20.7
Q ss_pred ccCccccCCcCCCCCCCccccC
Q 027432 193 KLCGNFAKGSCTFGDRCHFAHG 214 (223)
Q Consensus 193 ~~C~~~~~g~C~~g~~C~faH~ 214 (223)
.+|.+|.+|.|..|+.|.|.|.
T Consensus 71 ~~C~ffakG~C~~G~~C~y~H~ 92 (240)
T 3u1l_A 71 FFCLFFAKGMCCLGPKCEYLHH 92 (240)
T ss_dssp SBCHHHHTTCCSCGGGCSSBBS
T ss_pred eEcCccccCCCCCCCCCCccCC
Confidence 4899999999999999999995
No 71
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=90.77 E-value=0.1 Score=40.99 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=34.2
Q ss_pred ceEEEEeccccccceecCCCcchhhhhhhcCCeEEec
Q 027432 98 ATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIR 134 (223)
Q Consensus 98 ~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~ 134 (223)
....+.|....+|+.||++|++|+.|.++.|-+|.|-
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV 72 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVV 72 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEE
Confidence 5678899999999999999999999999999999884
No 72
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=88.78 E-value=0.096 Score=44.44 Aligned_cols=22 Identities=27% Similarity=0.628 Sum_probs=20.1
Q ss_pred ccCcccccccCCCCCCCCCCccc
Q 027432 31 RMCNRLNSAEGCKFGDKCHFAHG 53 (223)
Q Consensus 31 ~~C~~~~~~g~C~~g~~C~faH~ 53 (223)
.+|.+|.. |.|.+|+.|.|.|.
T Consensus 71 ~~C~ffak-G~C~~G~~C~y~H~ 92 (240)
T 3u1l_A 71 FFCLFFAK-GMCCLGPKCEYLHH 92 (240)
T ss_dssp SBCHHHHT-TCCSCGGGCSSBBS
T ss_pred eEcCcccc-CCCCCCCCCCccCC
Confidence 48999988 99999999999995
No 73
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=81.79 E-value=0.56 Score=40.10 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=36.0
Q ss_pred cceEEEEeccccccceecCCCcchhhhhhhcCCeEEecc
Q 027432 97 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRD 135 (223)
Q Consensus 97 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~ 135 (223)
..+..+.||.+..++-|||+|.|++.-.+-||-+|.|.+
T Consensus 183 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 221 (251)
T 2asb_A 183 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG 221 (251)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred CcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceE
Confidence 467889999999999999999999999999999999953
No 74
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=80.50 E-value=0.16 Score=39.93 Aligned_cols=39 Identities=28% Similarity=0.330 Sum_probs=34.3
Q ss_pred CcceEEEEeccccccceecCCCcchhhhhhhcCCeEEec
Q 027432 96 ASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIR 134 (223)
Q Consensus 96 ~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~ 134 (223)
......+.||.+..++.|||+|.|++-..+-+|.+|.|.
T Consensus 101 ~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 101 GVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp TEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred CcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 356778899999999999999999999999999887664
No 75
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=77.00 E-value=0.99 Score=40.58 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=36.2
Q ss_pred cceEEEEeccccccceecCCCcchhhhhhhcCCeEEecc
Q 027432 97 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRD 135 (223)
Q Consensus 97 ~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~ 135 (223)
.....+.||.+..++.|||+|.|++-..+-||.+|.|..
T Consensus 306 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 344 (366)
T 1k0r_A 306 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG 344 (366)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEE
T ss_pred CcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeE
Confidence 567899999999999999999999999999999999953
No 76
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=75.75 E-value=1.1 Score=39.89 Aligned_cols=39 Identities=31% Similarity=0.499 Sum_probs=36.0
Q ss_pred CcceEEEEeccccccceecCCCcchhhhhhhcCCeEEec
Q 027432 96 ASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIR 134 (223)
Q Consensus 96 ~~~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~ 134 (223)
...+..+.||.+..++-|||+|.|++.-.+-||-+|.|.
T Consensus 301 ~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~ 339 (344)
T 1hh2_P 301 ENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIK 339 (344)
T ss_dssp TTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEE
T ss_pred CCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEecee
Confidence 356789999999999999999999999999999999985
No 77
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=73.03 E-value=1.1 Score=35.30 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=26.2
Q ss_pred ceEEEEeccccccceecCCCcchhhhhhhc
Q 027432 98 ATAKISVDASLAGAIIGKGGVNSKQICRQT 127 (223)
Q Consensus 98 ~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~S 127 (223)
.++.+.|-.+..|.||||.|.+++.||--+
T Consensus 33 ~~i~i~i~ged~glLIGK~G~TL~ALQyL~ 62 (152)
T 2pt7_G 33 GVLLIDIDGEDSALLIGEKGYRYKALSYLL 62 (152)
T ss_dssp TEEEEEEEEGGGTTTTCGGGHHHHHHHHHH
T ss_pred CEEEEEEecCCcceEECCCCcchHHHHHHH
Confidence 457788899999999999999999988755
No 78
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=68.13 E-value=1.3 Score=31.95 Aligned_cols=29 Identities=14% Similarity=0.287 Sum_probs=24.6
Q ss_pred ceEEEEeccccccceecCCCcchhhhhhh
Q 027432 98 ATAKISVDASLAGAIIGKGGVNSKQICRQ 126 (223)
Q Consensus 98 ~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~ 126 (223)
...+|.|-...-|.|||++|..|.+|+..
T Consensus 35 ~~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 35 TRTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp SCEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 45788899999999999999988887653
No 79
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=58.97 E-value=2 Score=36.02 Aligned_cols=26 Identities=31% Similarity=0.611 Sum_probs=0.0
Q ss_pred ccccccCcccccccCCCCCCCCCCccccc
Q 027432 27 VVKSRMCNRLNSAEGCKFGDKCHFAHGEW 55 (223)
Q Consensus 27 ~~kt~~C~~~~~~g~C~~g~~C~faH~~~ 55 (223)
.-|.++|.+- ..|-||.+|.|-|-|.
T Consensus 189 ~~~~~~~~~~---~~~~~~~~~~~~~~~~ 214 (223)
T 3v33_A 189 EHRKQPCPYG---RKCTYGIKCRFFHPER 214 (223)
T ss_dssp -----------------------------
T ss_pred ccCCCCCCCC---cccccCCcceecCCcc
Confidence 3467778753 3699999999999654
No 80
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=53.74 E-value=4.1 Score=34.20 Aligned_cols=24 Identities=25% Similarity=0.596 Sum_probs=19.0
Q ss_pred ccCccccCCcCC----CCCCCccccCcc
Q 027432 193 KLCGNFAKGSCT----FGDRCHFAHGAA 216 (223)
Q Consensus 193 ~~C~~~~~g~C~----~g~~C~faH~~~ 216 (223)
-||++|..|.|. .+..|+|.|...
T Consensus 90 HLCK~~l~G~C~~~~~~~~~Ck~SHdi~ 117 (229)
T 3u9g_A 90 HLCKLNLLGRCHYAQSQRNLCKYSHDVL 117 (229)
T ss_dssp CCCHHHHTTCCGGGTCCSSCCSSCSCTT
T ss_pred eechhhhcCcCCcccCCCCCcccccccC
Confidence 479999999993 347799999664
No 81
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=52.31 E-value=3.2 Score=35.33 Aligned_cols=28 Identities=29% Similarity=0.474 Sum_probs=25.1
Q ss_pred ccccceecCCCcchhhh-hhhcCCeEEec
Q 027432 107 SLAGAIIGKGGVNSKQI-CRQTGAKLSIR 134 (223)
Q Consensus 107 ~~vG~IIGkgG~~Ik~I-~~~SGa~I~I~ 134 (223)
+-+|+.||++|++|+.| ++..|-+|.|-
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi 154 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDII 154 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEE
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEE
Confidence 56799999999999999 78889999983
No 82
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=46.87 E-value=7.4 Score=32.89 Aligned_cols=28 Identities=11% Similarity=0.302 Sum_probs=24.0
Q ss_pred eEEEEeccccccceecCCCcchhhhhhh
Q 027432 99 TAKISVDASLAGAIIGKGGVNSKQICRQ 126 (223)
Q Consensus 99 t~~i~VP~~~vG~IIGkgG~~Ik~I~~~ 126 (223)
..+|.|-...-|.|||++|..|++|+..
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 4678888999999999999999987653
No 83
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=43.31 E-value=5.5 Score=35.74 Aligned_cols=35 Identities=31% Similarity=0.498 Sum_probs=28.9
Q ss_pred EEEEecc-----ccccceecCCCcchhhhhhhc-CCeEEec
Q 027432 100 AKISVDA-----SLAGAIIGKGGVNSKQICRQT-GAKLSIR 134 (223)
Q Consensus 100 ~~i~VP~-----~~vG~IIGkgG~~Ik~I~~~S-Ga~I~I~ 134 (223)
.+|.|-+ +-+|+.||++|++|+.|.++. |-+|.|-
T Consensus 237 aKIAV~s~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi 277 (366)
T 1k0r_A 237 SKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDII 277 (366)
T ss_dssp EEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEE
T ss_pred EEEEEEeCCCCCCCcccccCCcchHHHHHHHHhCCCeEEEE
Confidence 3455544 678999999999999999888 9999883
No 84
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.27 E-value=7.1 Score=32.32 Aligned_cols=27 Identities=30% Similarity=0.560 Sum_probs=23.0
Q ss_pred eEEEEeccccccceecCCCcchhhhhh
Q 027432 99 TAKISVDASLAGAIIGKGGVNSKQICR 125 (223)
Q Consensus 99 t~~i~VP~~~vG~IIGkgG~~Ik~I~~ 125 (223)
..++.|-...-|.|||++|..|++|+.
T Consensus 41 ~~~I~I~t~rPg~vIG~~G~~I~~L~~ 67 (210)
T 3j20_C 41 GTKVIIFAANPGYVIGRGGRRIRELTR 67 (210)
T ss_dssp CCEEEEEESCHHHHHCSSSHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 457788888999999999999998764
No 85
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=39.20 E-value=8.3 Score=32.29 Aligned_cols=29 Identities=14% Similarity=0.319 Sum_probs=24.3
Q ss_pred ceEEEEeccccccceecCCCcchhhhhhh
Q 027432 98 ATAKISVDASLAGAIIGKGGVNSKQICRQ 126 (223)
Q Consensus 98 ~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~ 126 (223)
...+|.|-...-|.|||++|..|++|+..
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 44 MRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp TEECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 35678888899999999999999987653
No 86
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=37.81 E-value=6.5 Score=32.86 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=27.4
Q ss_pred ceEEEEeccccccceecCCCcchhhhhhhcCCe
Q 027432 98 ATAKISVDASLAGAIIGKGGVNSKQICRQTGAK 130 (223)
Q Consensus 98 ~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~ 130 (223)
.++.+.|..+..|.||||.|.++..||.-+...
T Consensus 92 ~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~ 124 (225)
T 3gku_A 92 KEMNVNLKGDDMGILIGKRGQTLDSLQYLVSLV 124 (225)
T ss_dssp TEEEEEEECHHHHHCSTTHHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCccceeecCCCeEhHHHHHHHHHH
Confidence 456777888889999999999999999876543
No 87
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=37.60 E-value=10 Score=32.07 Aligned_cols=29 Identities=21% Similarity=0.388 Sum_probs=24.9
Q ss_pred ceEEEEeccccccceecCCCcchhhhhhh
Q 027432 98 ATAKISVDASLAGAIIGKGGVNSKQICRQ 126 (223)
Q Consensus 98 ~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~ 126 (223)
...+|.|-...-|.|||++|..|++|+..
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 45788899999999999999999987763
No 88
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=37.52 E-value=7 Score=32.68 Aligned_cols=15 Identities=40% Similarity=1.006 Sum_probs=0.0
Q ss_pred cCCCCCCCccccCcc
Q 027432 202 SCTFGDRCHFAHGAA 216 (223)
Q Consensus 202 ~C~~g~~C~faH~~~ 216 (223)
+|.||.+|.|-|-+.
T Consensus 200 ~~~~~~~~~~~~~~~ 214 (223)
T 3v33_A 200 KCTYGIKCRFFHPER 214 (223)
T ss_dssp ---------------
T ss_pred ccccCCcceecCCcc
Confidence 599999999999764
No 89
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=40.29 E-value=8.6 Score=26.99 Aligned_cols=19 Identities=21% Similarity=0.621 Sum_probs=15.6
Q ss_pred cccCcccccccCCCCCCCCCCcc
Q 027432 30 SRMCNRLNSAEGCKFGDKCHFAH 52 (223)
Q Consensus 30 t~~C~~~~~~g~C~~g~~C~faH 52 (223)
.++|++|. .|.. +.|.|+|
T Consensus 9 ~e~CKf~~---~Ctn-~~C~f~H 27 (80)
T 2lhn_A 9 LEQCKFGT---HCTN-KRCKYRH 27 (80)
Confidence 46798776 5888 9999999
No 90
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=33.56 E-value=7.1 Score=33.29 Aligned_cols=27 Identities=41% Similarity=0.551 Sum_probs=20.4
Q ss_pred EEEEecc-ccccceecCCCcchhhhhhh
Q 027432 100 AKISVDA-SLAGAIIGKGGVNSKQICRQ 126 (223)
Q Consensus 100 ~~i~VP~-~~vG~IIGkgG~~Ik~I~~~ 126 (223)
..|+|.. +.-+.||||+|+.||+|...
T Consensus 242 a~i~ve~~~~k~i~ig~~g~~ik~i~~~ 269 (308)
T 3iev_A 242 GEIIVDRENLKPIIIGKKGQRLKEIGKR 269 (308)
T ss_dssp EEEEESSGGGHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEccCCcceEEEcCCcHHHHHHHHH
Confidence 3455554 46689999999999998763
No 91
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=32.96 E-value=12 Score=31.10 Aligned_cols=28 Identities=4% Similarity=0.079 Sum_probs=22.4
Q ss_pred eEEEEeccccccceecCCCcchhhhhhh
Q 027432 99 TAKISVDASLAGAIIGKGGVNSKQICRQ 126 (223)
Q Consensus 99 t~~i~VP~~~vG~IIGkgG~~Ik~I~~~ 126 (223)
..+|.|-...-|.|||++|..|++|++.
T Consensus 71 ~i~I~I~~~rPg~vIGk~g~~i~~L~~~ 98 (218)
T 3bbn_C 71 LIQVIIHMGFPKLLIENRPQGVEDLKIN 98 (218)
T ss_dssp CBCCEEEESCTTTTSCSSSCTTHHHHHH
T ss_pred eEEEEEEecCCCcEecCCcHHHHHHHHH
Confidence 3556777788899999999999887653
No 92
>1ans_A Neurotoxin III; NMR {Anemonia sulcata} SCOP: g.11.1.1
Probab=32.29 E-value=23 Score=19.39 Aligned_cols=15 Identities=33% Similarity=0.948 Sum_probs=11.3
Q ss_pred CcccccccCCCCCCCCC
Q 027432 33 CNRLNSAEGCKFGDKCH 49 (223)
Q Consensus 33 C~~~~~~g~C~~g~~C~ 49 (223)
|.-|. ++|++|.+|+
T Consensus 4 CPC~~--~gCpWGQ~~~ 18 (27)
T 1ans_A 4 CPCYW--GGCPWGQNCY 18 (27)
T ss_dssp CCSTT--TTCSSSCSSC
T ss_pred ccccc--cCCccccccc
Confidence 55553 8999999885
No 93
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=32.03 E-value=7.7 Score=31.99 Aligned_cols=35 Identities=20% Similarity=0.502 Sum_probs=26.7
Q ss_pred eEEEEeccccccceecCCCcchhhhhh----hcCCeEEe
Q 027432 99 TAKISVDASLAGAIIGKGGVNSKQICR----QTGAKLSI 133 (223)
Q Consensus 99 t~~i~VP~~~vG~IIGkgG~~Ik~I~~----~SGa~I~I 133 (223)
..+|.|-...-|.|||++|..|++|+. .++-.++|
T Consensus 62 ~i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I 100 (206)
T 3r8n_C 62 SIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQI 100 (206)
T ss_dssp SBCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCC
T ss_pred eEEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 356777788889999999999988764 45655554
No 94
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=31.61 E-value=13 Score=31.30 Aligned_cols=28 Identities=21% Similarity=0.534 Sum_probs=22.5
Q ss_pred eEEEEeccccccceecCCCcchhhhhhh
Q 027432 99 TAKISVDASLAGAIIGKGGVNSKQICRQ 126 (223)
Q Consensus 99 t~~i~VP~~~vG~IIGkgG~~Ik~I~~~ 126 (223)
..+|.|-...-|.|||++|..|++|+..
T Consensus 63 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 63 NVAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp CBCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred eEEEEEEeCCCcceecCCchHHHHHHHH
Confidence 3456677788899999999999887653
No 95
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=30.21 E-value=8.8 Score=32.25 Aligned_cols=35 Identities=20% Similarity=0.502 Sum_probs=26.0
Q ss_pred eEEEEeccccccceecCCCcchhhhhh----hcCCeEEe
Q 027432 99 TAKISVDASLAGAIIGKGGVNSKQICR----QTGAKLSI 133 (223)
Q Consensus 99 t~~i~VP~~~vG~IIGkgG~~Ik~I~~----~SGa~I~I 133 (223)
..+|.|-...-|.|||++|..|++|+. .++-.++|
T Consensus 63 ~i~I~I~t~rPg~vIGkkG~~I~~L~~~L~k~~~~~v~I 101 (233)
T 3i1m_C 63 SIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQI 101 (233)
T ss_dssp CBCCEEEESCHHHHHCSTTHHHHHHHHHHHHHHTSCBCC
T ss_pred eEEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 356777788889999999999988765 45544333
No 96
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=28.43 E-value=10 Score=32.08 Aligned_cols=29 Identities=14% Similarity=0.287 Sum_probs=24.5
Q ss_pred ceEEEEeccccccceecCCCcchhhhhhh
Q 027432 98 ATAKISVDASLAGAIIGKGGVNSKQICRQ 126 (223)
Q Consensus 98 ~t~~i~VP~~~vG~IIGkgG~~Ik~I~~~ 126 (223)
...+|.|-...-|.|||++|..|++|+..
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (243)
T 2zkq_c 44 TRTEIIILATRTQNVLGEKGRRIRELTAV 72 (243)
T ss_dssp TEECCEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchHHHHHHHH
Confidence 45678888899999999999999987764
No 97
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=27.73 E-value=85 Score=25.74 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=43.1
Q ss_pred EEEEeccccccceecCCCcchhhhhhhcCCeEEeccCCCCCCceEEEEcCCHHHHHHHHHHHHh
Q 027432 100 AKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRE 163 (223)
Q Consensus 100 ~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~~~~r~v~I~G~~~~i~~A~~lI~~ 163 (223)
.-+.++..++..++|+.+.-+..|.+.++..|.|.. +-+++ |.++......+...|..
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~-----NG~IW-i~~~~~~~~~~~~ai~~ 195 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ-----NGLIW-VNGDRRKVSIAEEAIYL 195 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT-----TSEEE-EESCHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC-----CcEEE-EeCCchhHHHHHHHHHH
Confidence 557888999999999999999999999999998843 33555 77776655545444443
No 98
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=24.41 E-value=27 Score=30.91 Aligned_cols=28 Identities=36% Similarity=0.572 Sum_probs=24.7
Q ss_pred ccccceecCCCcchhhhhhhc-CCeEEec
Q 027432 107 SLAGAIIGKGGVNSKQICRQT-GAKLSIR 134 (223)
Q Consensus 107 ~~vG~IIGkgG~~Ik~I~~~S-Ga~I~I~ 134 (223)
+-+|+.||.+|++|+.|.++. |-+|.|-
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii 273 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVL 273 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEE
Confidence 567999999999999999887 8898883
No 99
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=24.32 E-value=12 Score=31.86 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=18.9
Q ss_pred EEec-cccccceecCCCcchhhhhhh
Q 027432 102 ISVD-ASLAGAIIGKGGVNSKQICRQ 126 (223)
Q Consensus 102 i~VP-~~~vG~IIGkgG~~Ik~I~~~ 126 (223)
|.|. .+.-+.|||++|+.||+|...
T Consensus 234 i~ve~~~~k~iiig~~g~~lk~i~~~ 259 (301)
T 1wf3_A 234 LYVERPSQKAIVIGEGGRKIKEIGQA 259 (301)
T ss_dssp EEESSHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEeeCCceEEEEeCCchHHHHHHHH
Confidence 3443 356688999999999998663
No 100
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=23.55 E-value=1.6e+02 Score=23.98 Aligned_cols=60 Identities=13% Similarity=0.050 Sum_probs=44.6
Q ss_pred EEEEeccccccceecCCCcchhhhhhhcCCeEEeccCCCCCCceEEEEcCCHHHHHHHHHHHHhh
Q 027432 100 AKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVREL 164 (223)
Q Consensus 100 ~~i~VP~~~vG~IIGkgG~~Ik~I~~~SGa~I~I~~~~~~~~~r~v~I~G~~~~i~~A~~lI~~~ 164 (223)
.-+.|+...+..++|+++.-+..|.+.++..|.|.. +-+++.=.++.+.+..+...|..+
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~-----NG~IWi~~~~~~~~~~~~~ai~~~ 209 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR-----NGRIHLECPNEDLEAIAVMAIKII 209 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET-----TTEEEEECSCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC-----CCEEEEecCCHHHHHHHHHHHHHH
Confidence 557888899999999999999999888999998854 335553345676666666665544
Done!