BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027433
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I3F|A Chain A, Crystal Structure Of A Glycolipid Transfer-Like Protein
From Galdieria Sulphuraria
pdb|2I3F|B Chain B, Crystal Structure Of A Glycolipid Transfer-Like Protein
From Galdieria Sulphuraria
pdb|2Q52|A Chain A, Ensemble Refinement Of The Crystal Structure Of A
Glycolipid Transfer- Like Protein From Galdieria
Sulphuraria
pdb|2Q52|B Chain B, Ensemble Refinement Of The Crystal Structure Of A
Glycolipid Transfer- Like Protein From Galdieria
Sulphuraria
Length = 224
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 19/157 (12%)
Query: 40 IPTKPFLHLCNLVLQVLDKIGPTMLVLRQDIHQNIQRLEKFCELDPSKYANVVE--ILKK 97
+P +PFL VL+V+D G +++ DI NI++L + + + +A ++ I+ +
Sbjct: 30 VPLEPFLTAAKEVLRVVDAFGSGFRIVKNDIAGNIKKLYR---ANQTVHAETLQELIIAE 86
Query: 98 EASEGNARKKTSCSKAFLWLTRSLDFMVALLQRLAKDPGQKMEQAVEESYNIALKPWHGW 157
+ +G A + A LWL R+ F+ + L+RL + +EQ V E+YN L+P H
Sbjct: 87 NSPDGLA------TVALLWLKRAFQFIASFLRRLVV-TDKSLEQCVTEAYNCTLRPCHSA 139
Query: 158 ISSAAFKVALKLLPDSVTF-------MNILMAKDETY 187
+ F +KL P F +NI AK E +
Sbjct: 140 VIQKVFWGGVKLAPSRERFYRKLHPDLNIAKAKIEEF 176
>pdb|2BV7|A Chain A, Crystal Structure Of Gltp With Bound Gm3
Length = 208
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 11/151 (7%)
Query: 39 HIPTKPFLHLCNLVLQVLDKIG-PTMLVLRQDIHQNIQRLEKFCELDPSKYANVVEILKK 97
I T PFL + + D +G P ++ DI NI +++ + +P+K+ + IL+
Sbjct: 16 QIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEV 75
Query: 98 EAS-EGNARKKTSCSKAFLWLTRSLDFMVALLQRLAKDPGQKMEQ-------AVEESYNI 149
E G K + A +WL R L F+ LQ + G++ E ++Y +
Sbjct: 76 EKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICD--GERDENHPNLIRVNATKAYEM 133
Query: 150 ALKPWHGWISSAAFKVALKLLPDSVTFMNIL 180
ALK +HGWI F+ AL P F+ L
Sbjct: 134 ALKKYHGWIVQKIFQAALYAAPYKSDFLKAL 164
>pdb|1WBE|A Chain A, X-Ray Structure Of Bovine Gltp
Length = 209
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 11/151 (7%)
Query: 39 HIPTKPFLHLCNLVLQVLDKIG-PTMLVLRQDIHQNIQRLEKFCELDPSKYANVVEILKK 97
I T PFL + + D +G P ++ DI NI +++ + +P+K+ + IL+
Sbjct: 17 QIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEV 76
Query: 98 EAS-EGNARKKTSCSKAFLWLTRSLDFMVALLQRLAKDPGQKMEQ-------AVEESYNI 149
E G K + A +WL R L F+ LQ + G++ E ++Y +
Sbjct: 77 EKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICD--GERDENHPNLIRVNATKAYEM 134
Query: 150 ALKPWHGWISSAAFKVALKLLPDSVTFMNIL 180
ALK +HGWI F+ AL P F+ L
Sbjct: 135 ALKKYHGWIVQKIFQAALYAAPYKSDFLKAL 165
>pdb|1TFJ|A Chain A, Crystal Structure Of Bovine Glycolipid Transfer Protein In
Complex With A Fatty Acid
Length = 219
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 11/151 (7%)
Query: 39 HIPTKPFLHLCNLVLQVLDKIG-PTMLVLRQDIHQNIQRLEKFCELDPSKYANVVEILKK 97
I T PFL + + D +G P ++ DI NI +++ + +P+K+ + IL+
Sbjct: 27 QIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEV 86
Query: 98 EAS-EGNARKKTSCSKAFLWLTRSLDFMVALLQRLAKDPGQKMEQ-------AVEESYNI 149
E G K + A +WL R L F+ LQ + G++ E ++Y +
Sbjct: 87 EKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICD--GERDENHPNLIRVNATKAYEM 144
Query: 150 ALKPWHGWISSAAFKVALKLLPDSVTFMNIL 180
ALK +HGWI F+ AL P F+ L
Sbjct: 145 ALKKYHGWIVQKIFQAALYAAPYKSDFLKAL 175
>pdb|1SWX|A Chain A, Crystal Structure Of A Human Glycolipid Transfer Protein
In Apo-Form
pdb|1SX6|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein In
Lactosylceramide-Bound Form
pdb|2EUK|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 24:1 Galactosylceramide
pdb|2EUM|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 8:0 Lactosylceramide
pdb|2EVD|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 12:0 Lactosylceramide
pdb|2EVL|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 18:2 Galactosylceramide
pdb|2EVS|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With N-Hexyl-Beta-D-Glucoside
pdb|2EVS|E Chain E, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With N-Hexyl-Beta-D-Glucoside
pdb|3RWV|A Chain A, Crystal Structure Of Apo-Form Of Human Glycolipid Transfer
Protein At 1.5 A Resolution
pdb|3RWV|B Chain B, Crystal Structure Of Apo-Form Of Human Glycolipid Transfer
Protein At 1.5 A Resolution
pdb|3RZN|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 3-O-Sulfo-Galactosylceramide Containing
Nervonoyl Acyl Chain (24:1)
pdb|3S0K|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With Glucosylceramide Containing Oleoyl Acyl
Chain (18:1)
Length = 209
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 11/151 (7%)
Query: 39 HIPTKPFLHLCNLVLQVLDKIG-PTMLVLRQDIHQNIQRLEKFCELDPSKYANVVEILKK 97
I T PFL + + D +G P ++ DI NI +++ + +P+K+ + IL+
Sbjct: 17 QIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEV 76
Query: 98 EAS-EGNARKKTSCSKAFLWLTRSLDFMVALLQRLAKDPGQKMEQ-------AVEESYNI 149
E G K + A +WL R L F+ LQ + G++ E ++Y +
Sbjct: 77 EKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICD--GERDENHPNLIRVNATKAYEM 134
Query: 150 ALKPWHGWISSAAFKVALKLLPDSVTFMNIL 180
ALK +HGWI F+ AL P F+ L
Sbjct: 135 ALKKYHGWIVQKIFQAALYAAPYKSDFLKAL 165
>pdb|3RIC|A Chain A, Crystal Structure Of D48v||a47d Mutant Of Human Glycolipid
Transfer Protein Complexed With
3-O-Sulfo-Galactosylceramide Containing Nervonoyl Acyl
Chain (24:1)
Length = 209
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 11/151 (7%)
Query: 39 HIPTKPFLHLCNLVLQVLDKIG-PTMLVLRQDIHQNIQRLEKFCELDPSKYANVVEILKK 97
I T PFL + + D +G P ++ I NI +++ + +P+K+ + IL+
Sbjct: 17 QIETGPFLEAVSHLPPFFDCLGSPVFTPIKDVISGNITKIKAVYDTNPAKFRTLQNILEV 76
Query: 98 EAS-EGNARKKTSCSKAFLWLTRSLDFMVALLQRLAKDPGQKMEQ-------AVEESYNI 149
E G K + A +WL R L F+ LQ + G++ E ++Y +
Sbjct: 77 EKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICD--GERDENHPNLIRVNATKAYEM 134
Query: 150 ALKPWHGWISSAAFKVALKLLPDSVTFMNIL 180
ALK +HGWI F+ AL P F+ L
Sbjct: 135 ALKKYHGWIVQKIFQAALYAAPYKSDFLKAL 165
>pdb|2EVT|A Chain A, Crystal Structure Of D48v Mutant Of Human Glycolipid
Transfer Protein
pdb|3S0I|A Chain A, Crystal Structure Of D48v Mutant Of Human Glycolipid
Transfer Protein Complexed With 3-O-Sulfo
Galactosylceramide Containing Nervonoyl Acyl Chain
Length = 209
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 11/151 (7%)
Query: 39 HIPTKPFLHLCNLVLQVLDKIG-PTMLVLRQDIHQNIQRLEKFCELDPSKYANVVEILKK 97
I T PFL + + D +G P ++ I NI +++ + +P+K+ + IL+
Sbjct: 17 QIETGPFLEAVSHLPPFFDCLGSPVFTPIKAVISGNITKIKAVYDTNPAKFRTLQNILEV 76
Query: 98 EAS-EGNARKKTSCSKAFLWLTRSLDFMVALLQRLAKDPGQKMEQ-------AVEESYNI 149
E G K + A +WL R L F+ LQ + G++ E ++Y +
Sbjct: 77 EKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICD--GERDENHPNLIRVNATKAYEM 134
Query: 150 ALKPWHGWISSAAFKVALKLLPDSVTFMNIL 180
ALK +HGWI F+ AL P F+ L
Sbjct: 135 ALKKYHGWIVQKIFQAALYAAPYKSDFLKAL 165
>pdb|3KV0|A Chain A, Crystal Structure Of Het-C2: A Fungal Glycolipid Transfer
Pr (Gltp)
Length = 209
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 71/174 (40%), Gaps = 14/174 (8%)
Query: 40 IPTKPFLHLCNLVLQVLDKIGPTMLV-LRQDIHQNIQRLEKFCELDPSKYANVVEILKKE 98
I T FL + + D +G + D+ N++ + P + N+ ++++ E
Sbjct: 37 ISTAEFLEAAESLTTMFDVLGSIAFSPVXTDMLGNVEXIRXRMLAAPLESQNIQDLVRNE 96
Query: 99 ASEGNARKKTSCSKAFLWLTRSLDFM-VALLQRLAKDPGQKMEQAVEESYNIALKPWHGW 157
+ ++ LWL R L+F +AL + +++ + SY + L P H +
Sbjct: 97 LX----TXSHTATEGLLWLVRGLEFTCIALSXNIGST--EELADSFRGSYRVTLXPHHSF 150
Query: 158 ISSAAFKVALKLLPDSVTFMNILMAKDE--TYDNLKE---EMQTLTSLLVPFLE 206
+ F A+ P F L DE + L+E + + ++L FLE
Sbjct: 151 LVXPIFSAAMSACPYRXDFYAXL-GDDEQXVQEELREYLVALDXIVNILXRFLE 203
>pdb|3AY5|A Chain A, Crystal Structure Of Hhm (Human Homologue Of Murine
Maternal Id-Like Molecule)
Length = 360
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 13/49 (26%)
Query: 111 SKAFLWLTRSLDFMVALLQRLAKDPGQKMEQAVEESYNIALKPWHGWIS 159
+ A L LT+++DF+ KD ++MEQAVEES P+ G ++
Sbjct: 171 AAALLMLTKNVDFV--------KDAHEEMEQAVEES-----DPYSGLLN 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,431,028
Number of Sequences: 62578
Number of extensions: 195009
Number of successful extensions: 597
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 588
Number of HSP's gapped (non-prelim): 14
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)