Query 027433
Match_columns 223
No_of_seqs 119 out of 421
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 09:52:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3221 Glycolipid transfer pr 100.0 4.3E-51 9.3E-56 339.5 18.3 188 34-222 12-199 (199)
2 PF08718 GLTP: Glycolipid tran 100.0 2E-50 4.3E-55 328.4 13.6 146 38-183 1-148 (149)
3 KOG4189 Uncharacterized conser 100.0 9.3E-47 2E-51 312.8 21.5 201 8-220 7-208 (209)
4 KOG2875 8-oxoguanine DNA glyco 47.0 36 0.00078 30.9 4.7 80 60-149 119-215 (323)
5 PF13496 DUF4120: Domain of un 45.7 6.4 0.00014 29.3 -0.1 13 147-159 81-93 (95)
6 PF10815 ComZ: ComZ; InterPro 38.9 1.1E+02 0.0023 20.9 4.9 44 162-210 6-49 (56)
7 KOG2427 Uncharacterized conser 36.8 23 0.0005 33.3 2.0 69 151-221 133-210 (391)
8 PF08657 DASH_Spc34: DASH comp 31.1 68 0.0015 28.5 4.0 52 37-97 154-205 (259)
9 PF09409 PUB: PUB domain; Int 29.4 55 0.0012 23.6 2.6 40 117-156 6-48 (87)
10 COG0576 GrpE Molecular chapero 23.9 1.7E+02 0.0038 24.7 5.0 56 162-221 85-140 (193)
11 COG0598 CorA Mg2+ and Co2+ tra 23.8 5.3E+02 0.012 23.1 10.9 90 47-150 136-229 (322)
12 PRK14150 heat shock protein Gr 22.8 3.8E+02 0.0083 22.6 6.9 56 161-220 86-141 (193)
13 PRK14153 heat shock protein Gr 22.2 2.5E+02 0.0053 23.9 5.6 55 161-220 81-135 (194)
14 PF04424 DUF544: Protein of un 22.1 26 0.00056 27.4 -0.4 11 151-161 87-97 (121)
15 PRK14148 heat shock protein Gr 22.0 2.8E+02 0.006 23.7 5.9 55 161-220 88-142 (195)
16 PF06070 Herpes_UL32: Herpesvi 21.7 2.5E+02 0.0055 29.2 6.4 70 114-199 5-85 (839)
17 cd07603 BAR_ACAPs The Bin/Amph 21.3 1.8E+02 0.0039 24.7 4.6 49 41-90 62-119 (200)
18 PRK14162 heat shock protein Gr 21.1 2.9E+02 0.0063 23.5 5.8 55 161-220 87-141 (194)
19 PF14516 AAA_35: AAA-like doma 20.8 3.7E+02 0.008 24.2 6.9 54 143-201 222-275 (331)
20 PF09177 Syntaxin-6_N: Syntaxi 20.6 1.3E+02 0.0028 22.2 3.3 21 63-83 3-23 (97)
21 TIGR02414 pepN_proteo aminopep 20.6 8.6E+02 0.019 25.4 10.1 73 138-215 583-656 (863)
22 PF09373 PMBR: Pseudomurein-bi 20.1 1.6E+02 0.0034 17.5 2.9 26 37-62 2-27 (33)
23 PF03172 Sp100: Sp100 domain; 20.0 1.6E+02 0.0036 22.6 3.7 77 11-96 14-95 (103)
No 1
>KOG3221 consensus Glycolipid transfer protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.3e-51 Score=339.47 Aligned_cols=188 Identities=41% Similarity=0.663 Sum_probs=181.5
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHhhCCcccchHHHHHHHHHHcCCCCCCCcchhH
Q 027433 34 DAPRIHIPTKPFLHLCNLVLQVLDKIGPTMLVLRQDIHQNIQRLEKFCELDPSKYANVVEILKKEASEGNARKKTSCSKA 113 (223)
Q Consensus 34 ~~~~~~i~~~~fl~a~~~l~~~~d~lG~~f~~v~~Dv~~nI~kl~~~~~~~~~~~~tL~~mv~~E~~~g~~~~~~S~sr~ 113 (223)
-..+++|+|.+||+||.+|++|+|+||++|+||++||+|||.++++.|.+++.+|.+|+.+|+.|++....+ ++|||++
T Consensus 12 l~~d~~i~T~~FL~ac~~i~pvid~lG~~ftpVk~Di~gNI~kv~~~y~~d~~k~~~Lq~~i~~eie~~~a~-~~sat~a 90 (199)
T KOG3221|consen 12 LPDDGKIETGPFLEACKHIVPVIDKLGAVFTPVKSDISGNITKVKKVYDTDKEKFKYLQKIVKVEIETDIAE-KVSATLA 90 (199)
T ss_pred CCcccCCccHHHHHHHhhhhhHHHHhhhhhHhHHHHhhccHHHHHHHHhcChHHHHHHHHHHHHHHHHhhcc-cchhhHH
Confidence 457788999999999999999999999999999999999999999999999999999999999999998877 8999999
Q ss_pred HHHHHhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcccchhhHHHHHHHHhhhCCChHHHHHHHccCCCChHHHHHH
Q 027433 114 FLWLTRSLDFMVALLQRLAKDPGQKMEQAVEESYNIALKPWHGWISSAAFKVALKLLPDSVTFMNILMAKDETYDNLKEE 193 (223)
Q Consensus 114 LLwL~RaL~Fi~~fl~~l~~~~~~~~~~~~~~AY~~tL~~yH~W~vR~~~~~Al~~lPsR~~fl~~l~~~~e~~~~~~~~ 193 (223)
||||+|||+|+..||++|+.+.+++++.++.+||++||+|||||++|++|++|++++|+|++|++.++.++++.+...+.
T Consensus 91 LLWLkRgldF~~~~l~~l~~~~~~~l~~av~daY~kTLK~~HGwI~q~~FkvaLklvP~r~~Fl~als~~d~t~~~~~ed 170 (199)
T KOG3221|consen 91 LLWLKRGLDFTLAFLQELVNGESDCLIQAVADAYEKTLKKYHGWIVQSTFKVALKLVPDRKTFLKALSAGDETYDECIED 170 (199)
T ss_pred HHHHHhHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCcHHHHHHHHhcccchHHHHHHH
Confidence 99999999999999999999888889999999999999999999999999999999999999999999888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcC
Q 027433 194 MQTLTSLLVPFLEEIHSILRLQGLDMLKS 222 (223)
Q Consensus 194 m~~~~~~~~~~l~~i~~l~~~~~L~dl~~ 222 (223)
++.|+..+.|.++.|+.+|+++|++++|+
T Consensus 171 i~~fl~~~~~~L~~i~~~l~~~~ld~~~~ 199 (199)
T KOG3221|consen 171 ITSFLSLLTPILKEIYFVLEQYGLDDLRS 199 (199)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhccccccC
Confidence 99999999999999999999999999985
No 2
>PF08718 GLTP: Glycolipid transfer protein (GLTP); InterPro: IPR014830 Glycolipid transfer protein (GLTP) is a cytosolic protein that catalyses the intermembrane transfer of glycolipids such as glycosphingolipids, glyceroglycolipids, and possibly glucosylceramides, but not of phospholipids. The GLTP protein consists of a single domain with a multi-helical structure consisting of two layers of orthogonally packed helices [, ]. The GLTP domain is also found in trans-Golgi network proteins involved in Golgi-to-cell-surface membrane traffic [].; GO: 0017089 glycolipid transporter activity, 0051861 glycolipid binding, 0046836 glycolipid transport, 0005737 cytoplasm; PDB: 2BV7_A 1TFJ_A 1WBE_A 3KV0_A 3RWV_B 2EVD_A 2EUK_A 3RZN_A 2EVL_A 3S0K_A ....
Probab=100.00 E-value=2e-50 Score=328.42 Aligned_cols=146 Identities=38% Similarity=0.730 Sum_probs=136.2
Q ss_pred CCCChhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHH-hhCCcccchHHHHHHHHHHcCCCCCCCcchhHHHH
Q 027433 38 IHIPTKPFLHLCNLVLQVLDKIGPTMLVLRQDIHQNIQRLEKFC-ELDPSKYANVVEILKKEASEGNARKKTSCSKAFLW 116 (223)
Q Consensus 38 ~~i~~~~fl~a~~~l~~~~d~lG~~f~~v~~Dv~~nI~kl~~~~-~~~~~~~~tL~~mv~~E~~~g~~~~~~S~sr~LLw 116 (223)
++|++.+||++|++|++|||.||++|+||++||.+||++|++.+ +.+|++|.||++||++|+++|++++.+||+++|||
T Consensus 1 n~i~~~~fl~a~~~l~~~~~~lG~~f~~v~~Dv~~ni~~l~~~~~~~~~~~~~tl~~~v~~E~~~~~~~~~~s~s~~LLw 80 (149)
T PF08718_consen 1 NDIDTEPFLEACRELVKFFDKLGTVFSFVKSDVQGNIKKLRKAYQEEDPEKYKTLESMVDYEVENGTHKKKGSGSRTLLW 80 (149)
T ss_dssp SEEBHHHHHHHHTTSHHHHCCSSGGGHHHHHHHHHHHHHHHHHH-HHSTTTTSBHHHHHHHHHHHHGGGTSSHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCChhhhccHHHHHHHHHHHhcccccccHHHHHHH
Confidence 36899999999999999999999999999999999999999999 78999999999999999999998888899999999
Q ss_pred HHhHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHhhcccchhhHHHHHHHHhhhCCChHHHHHHHccC
Q 027433 117 LTRSLDFMVALLQRLAKDPGQK-MEQAVEESYNIALKPWHGWISSAAFKVALKLLPDSVTFMNILMAK 183 (223)
Q Consensus 117 L~RaL~Fi~~fl~~l~~~~~~~-~~~~~~~AY~~tL~~yH~W~vR~~~~~Al~~lPsR~~fl~~l~~~ 183 (223)
|||||+|++.||+++.++++++ ++++|++||++||+|||||+||++|++||+++|+|++|+++|+++
T Consensus 81 L~RaL~Fi~~~l~~l~~~~~~~~~~~~~~~AY~~tL~~yH~w~vr~~~~~a~~~~P~R~~fl~~l~~~ 148 (149)
T PF08718_consen 81 LHRALEFIVAFLENLLESPDDEKLSDAAREAYDKTLAPYHGWIVRKAFKLALKALPSRSDFLKKLGGN 148 (149)
T ss_dssp HHHHHHHHHHHHHHHHTS--BTBHHHHHHHHHHHHTGGGB-HHHHHHHHHHHHT--BHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHhCC
Confidence 9999999999999999987765 999999999999999999999999999999999999999999864
No 3
>KOG4189 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=9.3e-47 Score=312.81 Aligned_cols=201 Identities=19% Similarity=0.337 Sum_probs=179.0
Q ss_pred hhcHHHHHHHHHHHhhhhccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHhhCCcc
Q 027433 8 EKSSSEIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQVLDKIGPTMLVLRQDIHQNIQRLEKFCELDPSK 87 (223)
Q Consensus 8 ~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~i~~~~fl~a~~~l~~~~d~lG~~f~~v~~Dv~~nI~kl~~~~~~~~~~ 87 (223)
-+++.+|-.+|+-++..+ ..++++|++++|+.||+++|+||++||++|+||.+|+..||+.|.+...+||+.
T Consensus 7 ~~~~~~i~~~~~~i~~~v--------~~e~~eV~L~~f~~a~e~v~~~f~~lG~iF~Fve~Dv~aKid~L~~l~ssd~et 78 (209)
T KOG4189|consen 7 LGPLPKILQAFKTIEKSV--------IEEDNEVDLDQFLLAYEEVCKFFGCLGTIFSFVEKDVRAKIDDLVELRSSDPET 78 (209)
T ss_pred ccchHHHHHHHHHHHHHh--------cCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHH
Confidence 578999999999999999 467778999999999999999999999999999999999999999988888776
Q ss_pred cchHHHHHHHHHHcCCCCCCCcchhHHHHHHhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHhhcccchhhHHHHHHHH
Q 027433 88 YANVVEILKKEASEGNARKKTSCSKAFLWLTRSLDFMVALLQRLAKDPG-QKMEQAVEESYNIALKPWHGWISSAAFKVA 166 (223)
Q Consensus 88 ~~tL~~mv~~E~~~g~~~~~~S~sr~LLwL~RaL~Fi~~fl~~l~~~~~-~~~~~~~~~AY~~tL~~yH~W~vR~~~~~A 166 (223)
|.|+-++...|...++ ..+.||||+||+|+|||+|+..||.+++.+++ ++++++|++||++||+|||||+||+|+++|
T Consensus 79 ~rtild~~~e~~~~~~-~G~~Sgtr~Llrl~R~LefV~efl~~i~as~nD~s~~diakesYd~~lakhHsW~IRtAV~~a 157 (209)
T KOG4189|consen 79 YRTILDLDTEESEVGT-IGNQSGTRNLLRLNRALEFVIEFLDQIFASTNDESLKDIAKESYDKTLAKHHSWAIRTAVAAA 157 (209)
T ss_pred HHHHHHHHHHHhHhcc-cCccccchHHHHHHhhHHHHHHHHHHHHcCCCcchhhHHHHHHHHHhhhccccHHHHHHHHHH
Confidence 6665555444443332 22349999999999999999999999998865 579999999999999999999999999999
Q ss_pred hhhCCChHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 027433 167 LKLLPDSVTFMNILMAKDETYDNLKEEMQTLTSLLVPFLEEIHSILRLQGLDML 220 (223)
Q Consensus 167 l~~lPsR~~fl~~l~~~~e~~~~~~~~m~~~~~~~~~~l~~i~~l~~~~~L~dl 220 (223)
||++|+|.+|+..|+ ++++.+++.|+.+....+|++.+++.+|+.++|.+.
T Consensus 158 mYtLPTR~~lL~~Lk---~d~~~~~~~~~~~~~~~r~ii~~~~~l~~~~~l~~~ 208 (209)
T KOG4189|consen 158 MYTLPTRPELLCRLK---EDMDAANQNMQSYNRDSRPIIRRVDKLYELFELTDD 208 (209)
T ss_pred HHhCCCcHHHHHHHH---hHHHHHHHHHHHHHHccChHHHHHhHHHHHhccccC
Confidence 999999999999999 456789999999999999999999999999998864
No 4
>KOG2875 consensus 8-oxoguanine DNA glycosylase [Replication, recombination and repair]
Probab=46.99 E-value=36 Score=30.94 Aligned_cols=80 Identities=18% Similarity=0.227 Sum_probs=53.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhh---------------CCcccchHHHHHHHHHHcCCCCCCCcchhHHHHHHhHHHHH
Q 027433 60 GPTMLVLRQDIHQNIQRLEKFCEL---------------DPSKYANVVEILKKEASEGNARKKTSCSKAFLWLTRSLDFM 124 (223)
Q Consensus 60 G~~f~~v~~Dv~~nI~kl~~~~~~---------------~~~~~~tL~~mv~~E~~~g~~~~~~S~sr~LLwL~RaL~Fi 124 (223)
-.+|+|+-+- ++||.+|..+.+. +-+.|.||+.+...|++... ++-+-|-|+ .||
T Consensus 119 E~lfSFiCSS-NNNIaRIT~Mve~fc~~fG~~i~~~dg~~~h~FPsl~~L~g~~~Ea~L-R~~gfGYRA--------kYI 188 (323)
T KOG2875|consen 119 ECLFSFICSS-NNNIARITGMVERFCQAFGPRIIQLDGVDYHGFPSLQALAGPEVEAEL-RKLGFGYRA--------KYI 188 (323)
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHHHhhCcceEeecCcccccCccHHHhcCcHhHHHH-HHcCcchhH--------HHH
Confidence 3446666665 5799999877752 23467899999876665542 334556665 678
Q ss_pred HHHHHHHhcCCCC-c-HHHHHHHHHHH
Q 027433 125 VALLQRLAKDPGQ-K-MEQAVEESYNI 149 (223)
Q Consensus 125 ~~fl~~l~~~~~~-~-~~~~~~~AY~~ 149 (223)
..-.+.|.+.++. . +..++...|++
T Consensus 189 ~~ta~~l~~~~g~~~wLqsl~~~~yee 215 (323)
T KOG2875|consen 189 SATARALQEKQGGLAWLQSLRKSSYEE 215 (323)
T ss_pred HHHHHHHHHhcccchHHHHHhcccHHH
Confidence 8888888876654 3 66666666755
No 5
>PF13496 DUF4120: Domain of unknown function (DUF4120)
Probab=45.70 E-value=6.4 Score=29.32 Aligned_cols=13 Identities=38% Similarity=1.140 Sum_probs=10.4
Q ss_pred HHHhhcccchhhH
Q 027433 147 YNIALKPWHGWIS 159 (223)
Q Consensus 147 Y~~tL~~yH~W~v 159 (223)
+.-+|.|+|||.|
T Consensus 81 fav~~~pfhgw~i 93 (95)
T PF13496_consen 81 FAVMLGPFHGWSI 93 (95)
T ss_pred eEEEecCcccccc
Confidence 3457899999986
No 6
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=38.92 E-value=1.1e+02 Score=20.90 Aligned_cols=44 Identities=23% Similarity=0.267 Sum_probs=29.6
Q ss_pred HHHHHhhhCCChHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 027433 162 AFKVALKLLPDSVTFMNILMAKDETYDNLKEEMQTLTSLLVPFLEEIHS 210 (223)
Q Consensus 162 ~~~~Al~~lPsR~~fl~~l~~~~e~~~~~~~~m~~~~~~~~~~l~~i~~ 210 (223)
-...||+.+|.-+.++++-|-.= -.+.++-+++-+..|+..-|+
T Consensus 6 FmqIaMK~lPEak~~L~k~GIeL-----sme~~qP~m~L~~~VM~eAYE 49 (56)
T PF10815_consen 6 FMQIAMKYLPEAKEELDKKGIEL-----SMEMLQPLMQLLTKVMNEAYE 49 (56)
T ss_pred HHHHHHHHhHHHHHHHHHcCccC-----CHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999998877532 134455565656666655554
No 7
>KOG2427 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.78 E-value=23 Score=33.35 Aligned_cols=69 Identities=19% Similarity=0.252 Sum_probs=36.6
Q ss_pred hcccchhhHHHHHHHHhhh--CCChH-------HHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 027433 151 LKPWHGWISSAAFKVALKL--LPDSV-------TFMNILMAKDETYDNLKEEMQTLTSLLVPFLEEIHSILRLQGLDMLK 221 (223)
Q Consensus 151 L~~yH~W~vR~~~~~Al~~--lPsR~-------~fl~~l~~~~e~~~~~~~~m~~~~~~~~~~l~~i~~l~~~~~L~dl~ 221 (223)
..=||||+|-.-..-+..+ .+|+. +..+..+....+|.. +.+...+.......+.--..++.|||.++.
T Consensus 133 V~LyHGWlvDpq~~e~~~ai~~~Syn~~~~~~tq~ve~~~~~~~~E~s--~~i~s~~~~~~~f~~~s~tqlt~~Gl~~l~ 210 (391)
T KOG2427|consen 133 VPLYHGWLVDPQDVEIVDAIGNRSYNELETLLTQLVEKQCGCASTENS--EDVLSDCLMLESFLDESATQLTEHGLLRLR 210 (391)
T ss_pred CcceeeeecCCccHHHHHHhcccchhhhhhhHHHHHHHhcccccchhh--hhhhhHHHHHHHhhccchHHHHHhhhhhhh
Confidence 4569999997765444433 45566 666666654322221 112333333444444555566777776553
No 8
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=31.07 E-value=68 Score=28.50 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=38.6
Q ss_pred CCCCChhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHhhCCcccchHHHHHHH
Q 027433 37 RIHIPTKPFLHLCNLVLQVLDKIGPTMLVLRQDIHQNIQRLEKFCELDPSKYANVVEILKK 97 (223)
Q Consensus 37 ~~~i~~~~fl~a~~~l~~~~d~lG~~f~~v~~Dv~~nI~kl~~~~~~~~~~~~tL~~mv~~ 97 (223)
.++++++-+|+....||.++-..| +..+|..|+..|..-...-..|++-|..
T Consensus 154 ~~d~dvevLL~~ae~L~~vYP~~g---------a~eki~~Lr~~y~~l~~~i~~lE~~Vae 205 (259)
T PF08657_consen 154 VEDVDVEVLLRGAEKLCNVYPLPG---------AREKIAALRQRYNQLSNSIAYLEAEVAE 205 (259)
T ss_pred cccCCHHHHHHHHHHHHHhCCChH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999997664 4777888888776644444455555544
No 9
>PF09409 PUB: PUB domain; InterPro: IPR018997 The PUB (also known as PUG) domain is found in peptide N-glycanase where it functions as a AAA ATPase binding domain []. This domain is also found on other proteins linked to the ubiquitin-proteasome system. ; PDB: 2CM0_A 2CCQ_A 2D5U_A 2HPL_A 2HPJ_A.
Probab=29.35 E-value=55 Score=23.56 Aligned_cols=40 Identities=13% Similarity=0.417 Sum_probs=30.6
Q ss_pred HHhHHHHHHHHHHHHhcCCCCc-HH--HHHHHHHHHhhcccch
Q 027433 117 LTRSLDFMVALLQRLAKDPGQK-ME--QAVEESYNIALKPWHG 156 (223)
Q Consensus 117 L~RaL~Fi~~fl~~l~~~~~~~-~~--~~~~~AY~~tL~~yH~ 156 (223)
..++++.+...+.+|+..|++. .+ .....++.+.+.++||
T Consensus 6 ~~~al~~L~~il~NI~~~P~~~kyR~Ir~~N~~f~~~i~~~~g 48 (87)
T PF09409_consen 6 FQKALETLEKILSNILSNPNEEKYRRIRLSNKTFQEKILPVPG 48 (87)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CGGGEEETTSHHHHHHTTTSTT
T ss_pred HHHHHHHHHHHHHHHccCCCcccceEeecCcchHHHHhcCChh
Confidence 4678999999999999988743 33 2366788888888888
No 10
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=23.93 E-value=1.7e+02 Score=24.66 Aligned_cols=56 Identities=20% Similarity=0.209 Sum_probs=41.5
Q ss_pred HHHHHhhhCCChHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 027433 162 AFKVALKLLPDSVTFMNILMAKDETYDNLKEEMQTLTSLLVPFLEEIHSILRLQGLDMLK 221 (223)
Q Consensus 162 ~~~~Al~~lPsR~~fl~~l~~~~e~~~~~~~~m~~~~~~~~~~l~~i~~l~~~~~L~dl~ 221 (223)
.-+++...+|.-+.|-+.|.....+ .+.. ..++..+.-+++.+.++|.++|+..+.
T Consensus 85 ~e~~~~dlLpviDnlerAl~~~~~~-~d~~---~~l~~Gvem~~~~l~~~L~k~Gv~~i~ 140 (193)
T COG0576 85 IEKFAKDLLPVIDNLERALEAAEDD-KDPE---KALLEGVEMTLDQLLDALEKLGVEEIG 140 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-cchH---HHHHHHHHHHHHHHHHHHHHCCCEEeC
Confidence 3456788999999999998653212 1111 567777888999999999999998654
No 11
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=23.79 E-value=5.3e+02 Score=23.10 Aligned_cols=90 Identities=16% Similarity=0.259 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHhhCCcccchHHHHHHHHHHcCCCCCCCcchhHHHHHHhHHHHHHH
Q 027433 47 HLCNLVLQVLDKIGPTMLVLRQDIHQNIQRLEKFCELDPSKYANVVEILKKEASEGNARKKTSCSKAFLWLTRSLDFMVA 126 (223)
Q Consensus 47 ~a~~~l~~~~d~lG~~f~~v~~Dv~~nI~kl~~~~~~~~~~~~tL~~mv~~E~~~g~~~~~~S~sr~LLwL~RaL~Fi~~ 126 (223)
.+..-+..+++.+-..+.++-..+...++.|++....++.+ ..++.+...+ +.+..++|+|.=...
T Consensus 136 ~~~~l~~~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~-~~l~~l~~l~-------------~~l~~lr~~l~~~~~ 201 (322)
T COG0598 136 GADELLYALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTN-EELERLGELR-------------RSLVYLRRALAPLRD 201 (322)
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccH-HHHHHHHHHH-------------HHHHHHHHHHHhHHH
Confidence 34455566888888889999999999999999877655554 4555555443 367889999998888
Q ss_pred HHHHHhcCCC----CcHHHHHHHHHHHh
Q 027433 127 LLQRLAKDPG----QKMEQAVEESYNIA 150 (223)
Q Consensus 127 fl~~l~~~~~----~~~~~~~~~AY~~t 150 (223)
.+..+..++. +..+.-.++.|+.+
T Consensus 202 ~l~~l~~~~~~~~~~~~~~~l~dv~~~~ 229 (322)
T COG0598 202 VLLRLARRPLDWLSEEDREYLRDVLDHL 229 (322)
T ss_pred HHHHHHhcCcccCCHHHHHHHHHHHHHH
Confidence 8888877653 23555555655544
No 12
>PRK14150 heat shock protein GrpE; Provisional
Probab=22.79 E-value=3.8e+02 Score=22.62 Aligned_cols=56 Identities=23% Similarity=0.246 Sum_probs=41.9
Q ss_pred HHHHHHhhhCCChHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 027433 161 AAFKVALKLLPDSVTFMNILMAKDETYDNLKEEMQTLTSLLVPFLEEIHSILRLQGLDML 220 (223)
Q Consensus 161 ~~~~~Al~~lPsR~~fl~~l~~~~e~~~~~~~~m~~~~~~~~~~l~~i~~l~~~~~L~dl 220 (223)
..-+++-..+|-.+.|=..+.....+ ...+..++..+.-++..+.++|+++|+.-+
T Consensus 86 a~~~~~~~lL~v~DnlerAl~~~~~~----~~~~~~~~~Gv~mi~~~l~~~L~~~Gv~~i 141 (193)
T PRK14150 86 ALEKFANELLPVIDNLERALQAADKE----NEALKALIEGVELTLKSLLDTVAKFGVEVV 141 (193)
T ss_pred HHHHHHHHHHhHHhHHHHHHhccccc----chhHHHHHHHHHHHHHHHHHHHHHCCCeee
Confidence 56677888999999998888532211 123466777888899999999999998754
No 13
>PRK14153 heat shock protein GrpE; Provisional
Probab=22.18 E-value=2.5e+02 Score=23.94 Aligned_cols=55 Identities=24% Similarity=0.288 Sum_probs=41.1
Q ss_pred HHHHHHhhhCCChHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 027433 161 AAFKVALKLLPDSVTFMNILMAKDETYDNLKEEMQTLTSLLVPFLEEIHSILRLQGLDML 220 (223)
Q Consensus 161 ~~~~~Al~~lPsR~~fl~~l~~~~e~~~~~~~~m~~~~~~~~~~l~~i~~l~~~~~L~dl 220 (223)
..-+++...+|-.+.|-..+.....+ +.+..++..+.-++..+.++|+++|+.-.
T Consensus 81 a~~~~~~~LLpv~DnLerAl~~~~~~-----~~~~~l~~Gvemi~k~~~~vL~k~Gv~~I 135 (194)
T PRK14153 81 VLEQVLLDLLEVTDNFERALESARTA-----EDMNSIVEGIEMVSKQFFSILEKYGLERI 135 (194)
T ss_pred HHHHHHHHHhhHHhHHHHHHhccccc-----chHHHHHHHHHHHHHHHHHHHHHCCCeee
Confidence 34567788899999998888643211 23466777888899999999999998743
No 14
>PF04424 DUF544: Protein of unknown function (DUF544) ; InterPro: IPR007518 This is a eukaryotic protein of unknown function.
Probab=22.13 E-value=26 Score=27.37 Aligned_cols=11 Identities=27% Similarity=0.809 Sum_probs=8.8
Q ss_pred hcccchhhHHH
Q 027433 151 LKPWHGWISSA 161 (223)
Q Consensus 151 L~~yH~W~vR~ 161 (223)
+.-||||++-.
T Consensus 87 I~LvHGWl~dp 97 (121)
T PF04424_consen 87 IPLVHGWLVDP 97 (121)
T ss_pred CCceeeeccCC
Confidence 67799999853
No 15
>PRK14148 heat shock protein GrpE; Provisional
Probab=22.04 E-value=2.8e+02 Score=23.65 Aligned_cols=55 Identities=22% Similarity=0.190 Sum_probs=42.1
Q ss_pred HHHHHHhhhCCChHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 027433 161 AAFKVALKLLPDSVTFMNILMAKDETYDNLKEEMQTLTSLLVPFLEEIHSILRLQGLDML 220 (223)
Q Consensus 161 ~~~~~Al~~lPsR~~fl~~l~~~~e~~~~~~~~m~~~~~~~~~~l~~i~~l~~~~~L~dl 220 (223)
...+++...+|--+.|-..+.....+ ..+..+...+..++..+.++|+++|+.-+
T Consensus 88 a~~~~~~~LLpV~DnlerAl~~~~~~-----~~~~~l~~Gv~mi~k~l~~vL~k~Gv~~I 142 (195)
T PRK14148 88 GIEKFAKELLPVIDSIEQALKHEVKL-----EEAIAMKEGIELTAKMLVDILKKNGVEEL 142 (195)
T ss_pred HHHHHHHHHhhHHhHHHHHHhccccc-----hhHHHHHHHHHHHHHHHHHHHHHCCCEEe
Confidence 45567888899999999888753311 13455778888999999999999999754
No 16
>PF06070 Herpes_UL32: Herpesvirus large structural phosphoprotein UL32; InterPro: IPR010340 The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins [].; GO: 0005198 structural molecule activity
Probab=21.73 E-value=2.5e+02 Score=29.17 Aligned_cols=70 Identities=26% Similarity=0.367 Sum_probs=49.4
Q ss_pred HHHH-HhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcccchhhHHHHHHHHhhhCCChHHHHHHHc----------c
Q 027433 114 FLWL-TRSLDFMVALLQRLAKDPGQKMEQAVEESYNIALKPWHGWISSAAFKVALKLLPDSVTFMNILM----------A 182 (223)
Q Consensus 114 LLwL-~RaL~Fi~~fl~~l~~~~~~~~~~~~~~AY~~tL~~yH~W~vR~~~~~Al~~lPsR~~fl~~l~----------~ 182 (223)
++|| +|...++..||.+|..-++.+|. .|+|++++. .=+.++.|..+++.|- .
T Consensus 5 FigL~rr~v~~L~~FL~~L~~~~~VDL~-------------~HpkVl~kC---g~~~L~rrt~lyN~LvLWL~Yyr~Lr~ 68 (839)
T PF06070_consen 5 FIGLPRRNVVRLTKFLKNLSSRPDVDLE-------------EHPKVLRKC---GGKFLHRRTTLYNELVLWLGYYRELRK 68 (839)
T ss_pred cccCCHHHHHHHHHHHHhcccCCCCChh-------------hCcHHHHhc---CCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 4565 67899999999999877776663 599999988 7777777777776652 2
Q ss_pred CCCChHHHHHHHHHHHH
Q 027433 183 KDETYDNLKEEMQTLTS 199 (223)
Q Consensus 183 ~~e~~~~~~~~m~~~~~ 199 (223)
..+|..++.+.+++++.
T Consensus 69 ~~PD~s~l~~ef~~~~~ 85 (839)
T PF06070_consen 69 HRPDYSSLLDEFERLCS 85 (839)
T ss_pred hCCChHHHHHHHHHHHH
Confidence 33454555555555544
No 17
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.31 E-value=1.8e+02 Score=24.65 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=29.8
Q ss_pred ChhHHHHHHHHHHHHHhhh---------cchhHHHHHHHHHHHHHHHHHHhhCCcccch
Q 027433 41 PTKPFLHLCNLVLQVLDKI---------GPTMLVLRQDIHQNIQRLEKFCELDPSKYAN 90 (223)
Q Consensus 41 ~~~~fl~a~~~l~~~~d~l---------G~~f~~v~~Dv~~nI~kl~~~~~~~~~~~~t 90 (223)
.+..|..+.+++..+...| .+.-+|++.|+. .++-.++.++.....|.+
T Consensus 62 ~l~kF~~~l~el~~~~~~L~~q~~~~i~~pL~~F~k~dL~-~vKE~kk~Fdk~s~~yd~ 119 (200)
T cd07603 62 CLNKFIQALQEMNNFHTILLDQAQRTVSTQLQNFVKEDIK-KVKESKKHFEKISDDLDN 119 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHH
Confidence 3455666666666666555 233477888876 477777777655554443
No 18
>PRK14162 heat shock protein GrpE; Provisional
Probab=21.13 E-value=2.9e+02 Score=23.48 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=41.2
Q ss_pred HHHHHHhhhCCChHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 027433 161 AAFKVALKLLPDSVTFMNILMAKDETYDNLKEEMQTLTSLLVPFLEEIHSILRLQGLDML 220 (223)
Q Consensus 161 ~~~~~Al~~lPsR~~fl~~l~~~~e~~~~~~~~m~~~~~~~~~~l~~i~~l~~~~~L~dl 220 (223)
.+.+++...+|-.++|=..|....++ +.+..++..+.-++..+.++|+++|+.-.
T Consensus 87 a~~~~~~~LLpV~DnLerAl~~~~~~-----~~~~~l~~Gvemi~k~l~~vL~~~GV~~I 141 (194)
T PRK14162 87 ESQSLAKDVLPAMDNLERALAVKADD-----EAAKQLKKGVQMTLDHLVKALKDHGVTEI 141 (194)
T ss_pred HHHHHHHHHhhHHhHHHHHHhccccc-----hhHHHHHHHHHHHHHHHHHHHHHCCCEEe
Confidence 35567788899999998888643211 23456778888899999999999999744
No 19
>PF14516 AAA_35: AAA-like domain
Probab=20.76 E-value=3.7e+02 Score=24.25 Aligned_cols=54 Identities=9% Similarity=0.106 Sum_probs=33.3
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHhhhCCChHHHHHHHccCCCChHHHHHHHHHHHHHH
Q 027433 143 VEESYNIALKPWHGWISSAAFKVALKLLPDSVTFMNILMAKDETYDNLKEEMQTLTSLL 201 (223)
Q Consensus 143 ~~~AY~~tL~~yH~W~vR~~~~~Al~~lPsR~~fl~~l~~~~e~~~~~~~~m~~~~~~~ 201 (223)
...-|+-|= =|||+||+++......--+-+++++.-.... .....+++.+...+
T Consensus 222 ~~~l~~~tg--GhP~Lv~~~~~~l~~~~~~~~~l~~~a~~~~---~~~~~hL~~l~~~L 275 (331)
T PF14516_consen 222 LEQLMDWTG--GHPYLVQKACYLLVEEQITLEQLLEEAITDN---GIYNDHLDRLLDRL 275 (331)
T ss_pred HHHHHHHHC--CCHHHHHHHHHHHHHccCcHHHHHHHHHHhc---ccHHHHHHHHHHHH
Confidence 445554443 3999999999999886556666666553221 23445555555543
No 20
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=20.64 E-value=1.3e+02 Score=22.17 Aligned_cols=21 Identities=19% Similarity=0.577 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 027433 63 MLVLRQDIHQNIQRLEKFCEL 83 (223)
Q Consensus 63 f~~v~~Dv~~nI~kl~~~~~~ 83 (223)
|..|+.||...|++++..|..
T Consensus 3 F~~v~~ev~~sl~~l~~~~~~ 23 (97)
T PF09177_consen 3 FFVVKDEVQSSLDRLESLYRR 23 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999988764
No 21
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=20.59 E-value=8.6e+02 Score=25.43 Aligned_cols=73 Identities=16% Similarity=0.203 Sum_probs=47.9
Q ss_pred cHHHHHHHHHHHhhcccchhhHHHHHHHHhhhCCChHHHHHHHccCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHc
Q 027433 138 KMEQAVEESYNIALKPWHGWISSAAFKVALKLLPDSVTFMNILMAKDETYDNLKEEMQTLTSLLV-PFLEEIHSILRLQ 215 (223)
Q Consensus 138 ~~~~~~~~AY~~tL~~yH~W~vR~~~~~Al~~lPsR~~fl~~l~~~~e~~~~~~~~m~~~~~~~~-~~l~~i~~l~~~~ 215 (223)
.++...-+||...|.. --+-.++..-+-++|+...+...+.. -|-+.+..+-+.+..++. .+-+.+..+|..+
T Consensus 583 ~~~~~~~~~~~~~l~~---~~~d~~~~a~~l~lp~~~~l~~~~~~--~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~~ 656 (863)
T TIGR02414 583 PVDPAFIDALGKLLND---PHLDAAFKALLLALPSEAYLAELMEN--IDPDALHAAREFLRAAIARQLADDLLRLYDAL 656 (863)
T ss_pred CCCHHHHHHHHHHhcC---CCCCHHHHHHHhcCCCHHHHHHHccC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4788899999999974 33567788889999999999998853 233334444443333322 2334555566554
No 22
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=20.09 E-value=1.6e+02 Score=17.54 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=22.0
Q ss_pred CCCCChhHHHHHHHHHHHHHhhhcch
Q 027433 37 RIHIPTKPFLHLCNLVLQVLDKIGPT 62 (223)
Q Consensus 37 ~~~i~~~~fl~a~~~l~~~~d~lG~~ 62 (223)
.+.|...+|++++..+..|.+.=|..
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~~ngRl 27 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYESNGRL 27 (33)
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCC
Confidence 35688999999999999999888765
No 23
>PF03172 Sp100: Sp100 domain; InterPro: IPR004865 The Sp100 and promyelocytic leukemia proteins (PML) are constituents of nuclear domains, known as nuclear dots (NDs or NBs - nuclear bodies or PML bodies), and are both covalently modified by the small ubiquitin-related protein SUMO-1. NBs play a role in autoimmunity, virus infections, and in the etiology of acute promyelocytic leukemia []. A functional nuclear localization signal and an NB-targeting region that coincides with an Sp100 homodimerization domain have been mapped. Sequences similar to the Sp100 homodimerization/ND-targeting region occur in several other proteins, which include the autoimmune regulator proteins (AIRE) and other numerous other transiently or permanently localised proteins. PML is expressed as a family of isoforms (PML I-VII) as a result of alternative splicing, most of which are found in the nucleus. Although there are many other functions of PML NBs in a wide range of cellular pathways, there is accumulating evidence that they represent preferential targets for viral infections and that PML plays a role in the mechanism of the antiviral action of interferon []. The Sp100 domain is usually found at the amino terminus of proteins that contain a SAND domain IPR000770 from INTERPRO. ; GO: 0005634 nucleus
Probab=20.05 E-value=1.6e+02 Score=22.59 Aligned_cols=77 Identities=18% Similarity=0.162 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCCCCCCChh----HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHhh-CC
Q 027433 11 SSEIRSAIEELSMFIKLKPKDNLDAPRIHIPTK----PFLHLCNLVLQVLDKIGPTMLVLRQDIHQNIQRLEKFCEL-DP 85 (223)
Q Consensus 11 ~~~~~~~~~el~~~~~~~~~~~~~~~~~~i~~~----~fl~a~~~l~~~~d~lG~~f~~v~~Dv~~nI~kl~~~~~~-~~ 85 (223)
..+||.||+.-=|+.- ..+|.++-++ .++++|++++++=..+=.+.+-+.+. -+-.-++..++. |-
T Consensus 14 KvEIa~AI~kpFPfl~-------gLrD~~~ItE~~y~e~~e~crnlvpv~rvvY~vLs~Lek~--f~~~fl~~LFs~~nL 84 (103)
T PF03172_consen 14 KVEIAYAITKPFPFLE-------GLRDHSFITEQMYKESQEACRNLVPVQRVVYNVLSWLEKT--FIRSFLEALFSDYNL 84 (103)
T ss_pred HHHHHHHHcccchHHH-------HhhhcccccHHHHHHHHHHHhccccHHHHHHHHHHHHHHH--hhHHHHHHHhhHHHH
Confidence 3577777776666664 5567776665 56778887776544333333322111 112223333322 44
Q ss_pred cccchHHHHHH
Q 027433 86 SKYANVVEILK 96 (223)
Q Consensus 86 ~~~~tL~~mv~ 96 (223)
..|..|..+..
T Consensus 85 ~~YP~L~~i~~ 95 (103)
T PF03172_consen 85 KEYPDLQEIYR 95 (103)
T ss_pred HHCccHHHHHH
Confidence 56666665543
Done!