Query 027433
Match_columns 223
No_of_seqs 119 out of 421
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 16:27:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027433.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027433hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rzn_A GLTP, glycolipid transf 100.0 1.6E-55 5.3E-60 375.1 19.9 186 36-221 14-207 (209)
2 2i3f_A Glycolipid transfer-lik 100.0 4.3E-54 1.5E-58 369.5 20.8 192 7-221 8-200 (224)
3 3kv0_A HET-C2; GLTP, glycolipi 100.0 1.5E-53 5.1E-58 362.7 20.8 173 37-217 34-207 (209)
4 2jtt_C Calcyclin-binding prote 51.4 22 0.00076 21.1 3.8 27 124-150 8-34 (35)
5 2hn1_A CORA, magnesium and cob 26.0 2.6E+02 0.009 22.6 8.2 83 53-150 175-261 (266)
6 1mdy_A Protein (MYOD BHLH doma 25.1 1.6E+02 0.0054 19.7 5.7 34 11-51 24-57 (68)
7 2itb_A TRNA-(MS(2)IO(6)A)-hydr 23.9 1.6E+02 0.0054 24.2 6.0 52 153-218 33-87 (206)
8 3k8p_D Protein transport prote 20.5 3.7E+02 0.013 26.2 8.6 58 41-98 483-550 (709)
9 2oa4_A SIR5; structure, struct 19.2 53 0.0018 24.0 1.9 47 173-223 39-85 (101)
10 1hlo_A Protein (transcription 19.0 2.2E+02 0.0076 19.1 5.3 34 12-52 25-58 (80)
No 1
>3rzn_A GLTP, glycolipid transfer protein; GLTP-fold, lipid transport; HET: CIS; 1.10A {Homo sapiens} PDB: 1sx6_A* 2euk_A* 2eum_A* 2evd_A* 2evl_A* 2evs_A* 1swx_A 3rwv_A* 3s0k_A* 3s0i_A* 2evt_A* 1wbe_A* 3ric_A* 1tfj_A* 2bv7_A*
Probab=100.00 E-value=1.6e-55 Score=375.11 Aligned_cols=186 Identities=23% Similarity=0.416 Sum_probs=173.7
Q ss_pred CCCCCChhHHHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHHHHHHhhCCcccchHHHHHHHHHHcCCCC-CCCcchhH
Q 027433 36 PRIHIPTKPFLHLCNLVLQVLDKIGP-TMLVLRQDIHQNIQRLEKFCELDPSKYANVVEILKKEASEGNAR-KKTSCSKA 113 (223)
Q Consensus 36 ~~~~i~~~~fl~a~~~l~~~~d~lG~-~f~~v~~Dv~~nI~kl~~~~~~~~~~~~tL~~mv~~E~~~g~~~-~~~S~sr~ 113 (223)
++++|+|.+||+||++|++|||+||+ +|+||++||.|||++|++++..+|.+|.||++||++|++.|+.. .+.|||++
T Consensus 14 ~~~~i~t~~fL~a~~~l~~~~d~LG~~~F~~v~~D~~~nI~kl~~~~~~~~~~~~tL~~mv~~E~~~~~~~~~~~s~tr~ 93 (209)
T 3rzn_A 14 ADKQIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMYGAEWPKVGATLA 93 (209)
T ss_dssp TTCCCBHHHHHHHHTTSGGGGGGSSCGGGHHHHHHHHHHHHHHHHHHHHCTTTTSBHHHHHHHHHHHHGGGTTSSHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHhcCchhhccHHHHHHHHHHcCCcccCCchHHHH
Confidence 57889999999999999999999999 89999999999999999999999999999999999999998763 46899999
Q ss_pred HHHHHhHHHHHHHHHHHHhcCCCC-----cHHHHHHHHHHHhhcccchhhHHHHHHHHhhhCCChHHHHHHHccCC-CCh
Q 027433 114 FLWLTRSLDFMVALLQRLAKDPGQ-----KMEQAVEESYNIALKPWHGWISSAAFKVALKLLPDSVTFMNILMAKD-ETY 187 (223)
Q Consensus 114 LLwL~RaL~Fi~~fl~~l~~~~~~-----~~~~~~~~AY~~tL~~yH~W~vR~~~~~Al~~lPsR~~fl~~l~~~~-e~~ 187 (223)
||||||||+|++.||+++.+++++ +++++|++||++||+|||||+||++|++||+++|+|++|+++++++. .++
T Consensus 94 LLwL~R~L~fi~~~l~~l~~~~~~~~~~~~l~~~~~~AY~~tL~~~H~w~vr~a~~~A~~a~P~R~~fl~~l~~g~~~~e 173 (209)
T 3rzn_A 94 LMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTE 173 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCTTSTTCCHHHHHHHHHHHTGGGSCHHHHHHHHHHGGGCCCHHHHHHHHTTTSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhCCCHHHHHHHHhcCCCCcH
Confidence 999999999999999999886543 38999999999999999999999999999999999999999997543 468
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 027433 188 DNLKEEMQTLTSLLVPFLEEIHSILRLQGLDMLK 221 (223)
Q Consensus 188 ~~~~~~m~~~~~~~~~~l~~i~~l~~~~~L~dl~ 221 (223)
+++.++|++++.++.+++++|+++|+++||+.-+
T Consensus 174 e~~~~~l~~~l~~l~~iv~~i~~~~~~~~L~~~~ 207 (209)
T 3rzn_A 174 EECLEKIRLFLVNYTATIDVIYEMYTQMNAELNY 207 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 8899999999999999999999999999998754
No 2
>2i3f_A Glycolipid transfer-like protein; GLTP superfamily, GLTP-like, protein structure initiative, PSI; 1.38A {Galdieria sulphuraria} PDB: 2q52_A
Probab=100.00 E-value=4.3e-54 Score=369.48 Aligned_cols=192 Identities=24% Similarity=0.365 Sum_probs=175.3
Q ss_pred hhhcHHHHHHHHHHHhhhhccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHhhCCc
Q 027433 7 IEKSSSEIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLVLQVLDKIGPTMLVLRQDIHQNIQRLEKFCELDPS 86 (223)
Q Consensus 7 ~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~i~~~~fl~a~~~l~~~~d~lG~~f~~v~~Dv~~nI~kl~~~~~~~~~ 86 (223)
..=.+.+|..+|+++... ++++|+|.+||+||++|++|||+||++|+||++||.|||++| +.++|.
T Consensus 8 ~~f~l~~v~~~F~~~~~~-----------~~~~I~t~~FL~a~~~l~~~fd~LG~~F~~v~~Dv~gnI~kL---~~~~p~ 73 (224)
T 2i3f_A 8 EKEDFGIIVILWKQVTVK-----------EDGKVPLEPFLTAAKEVLRVVDAFGSGFRIVKNDIAGNIKKL---YRANQT 73 (224)
T ss_dssp ---CTTHHHHHHHTSCCC-----------TTCCCBHHHHHHHHHHTHHHHHHHCGGGHHHHHHHHHHHHHH---HHHHTT
T ss_pred cCCCHHHHHHHHHHhhcc-----------CCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HhhCcc
Confidence 344677888888876531 246899999999999999999999999999999999999999 667798
Q ss_pred -ccchHHHHHHHHHHcCCCCCCCcchhHHHHHHhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcccchhhHHHHHHH
Q 027433 87 -KYANVVEILKKEASEGNARKKTSCSKAFLWLTRSLDFMVALLQRLAKDPGQKMEQAVEESYNIALKPWHGWISSAAFKV 165 (223)
Q Consensus 87 -~~~tL~~mv~~E~~~g~~~~~~S~sr~LLwL~RaL~Fi~~fl~~l~~~~~~~~~~~~~~AY~~tL~~yH~W~vR~~~~~ 165 (223)
+|.||++||.+|+ + +++|||++||||||||+|++.||++++.+++ +++++|++||++||+|||||+||++|++
T Consensus 74 ~~~~TL~~mv~~E~-~----k~~S~tr~LLwL~RaL~Fi~~~l~~l~~~~~-~l~~~~~~AY~~tL~~yHgwivr~af~~ 147 (224)
T 2i3f_A 74 VHAETLQELIIAEN-S----PDGLATVALLWLKRAFQFIASFLRRLVVTDK-SLEQCVTEAYNCTLRPCHSAVIQKVFWG 147 (224)
T ss_dssp TCCSBHHHHHHHHC-S----TTCHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CHHHHHHHHHHTTTGGGSCHHHHHHHHH
T ss_pred chhhhHHHHHHHHH-h----cCCchhHHHHHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhhcCCchHHHHHHHH
Confidence 9999999999999 4 4789999999999999999999999999888 9999999999999999999999999999
Q ss_pred HhhhCCChHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 027433 166 ALKLLPDSVTFMNILMAKDETYDNLKEEMQTLTSLLVPFLEEIHSILRLQGLDMLK 221 (223)
Q Consensus 166 Al~~lPsR~~fl~~l~~~~e~~~~~~~~m~~~~~~~~~~l~~i~~l~~~~~L~dl~ 221 (223)
||+++|+|++|+++|+.+ ++++.++|+.++.++.|++++|+++|+++||+|+-
T Consensus 148 Am~a~P~R~~fl~~L~~~---~~~~~~~l~~~l~~l~~v~~~i~~ly~~~~L~d~~ 200 (224)
T 2i3f_A 148 GVKLAPSRERFYRKLHPD---LNIAKAKIEEFLIELHDPLCCIVQFFFQRELEDQC 200 (224)
T ss_dssp HHTTCCCHHHHHHHHCSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHhCCCHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcc
Confidence 999999999999999854 57789999999999999999999999999999873
No 3
>3kv0_A HET-C2; GLTP, glycolipid transfer protein, transport protein; HET: MLY; 1.90A {Podospora anserina}
Probab=100.00 E-value=1.5e-53 Score=362.73 Aligned_cols=173 Identities=18% Similarity=0.356 Sum_probs=165.4
Q ss_pred CCCCChhHHHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHHHHHHhhCCcccchHHHHHHHHHHcCCCCCCCcchhHHH
Q 027433 37 RIHIPTKPFLHLCNLVLQVLDKIGP-TMLVLRQDIHQNIQRLEKFCELDPSKYANVVEILKKEASEGNARKKTSCSKAFL 115 (223)
Q Consensus 37 ~~~i~~~~fl~a~~~l~~~~d~lG~-~f~~v~~Dv~~nI~kl~~~~~~~~~~~~tL~~mv~~E~~~g~~~~~~S~sr~LL 115 (223)
+++|+|.+||++|++|++|||+||+ +|+||++||.+||++|++++..+|.+|.||++||++|+++| +.|||++||
T Consensus 34 ~~~I~t~~fL~a~~~l~~~fd~LG~~~F~~v~~D~~~nI~kl~~~~~~~~~~~~tL~~mv~~E~~~~----~~S~tr~LL 109 (209)
T 3kv0_A 34 GNAISTAEFLEAAESLTTMFDVLGSIAFSPVXTDMLGNVEXIRXRMLAAPLESQNIQDLVRNELXTX----SHTATEGLL 109 (209)
T ss_dssp TSEEBHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHSGGGCSBHHHHHHHHTCC-----CCHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhHHHHHHHhhcCchhhchHHHHHHHHHHhc----ccchHHHHH
Confidence 7789999999999999999999999 99999999999999999999999999999999999999884 689999999
Q ss_pred HHHhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhcccchhhHHHHHHHHhhhCCChHHHHHHHccCCCChHHHHHHHH
Q 027433 116 WLTRSLDFMVALLQRLAKDPGQKMEQAVEESYNIALKPWHGWISSAAFKVALKLLPDSVTFMNILMAKDETYDNLKEEMQ 195 (223)
Q Consensus 116 wL~RaL~Fi~~fl~~l~~~~~~~~~~~~~~AY~~tL~~yH~W~vR~~~~~Al~~lPsR~~fl~~l~~~~e~~~~~~~~m~ 195 (223)
||||||+|++.||++++ +++++++++|++||++||+|||||+||++|++||+++|+|++|+++|+ ++++++.++|+
T Consensus 110 wL~RaL~fi~~~l~~l~-~~~~~l~~~~~~AY~~tL~~yHgw~vr~af~~A~~a~P~R~~fl~~l~---~~~~~~~~~L~ 185 (209)
T 3kv0_A 110 WLVRGLEFTCIALSXNI-GSTEELADSFRGSYRVTLXPHHSFLVXPIFSAAMSACPYRXDFYAXLG---DDEQXVQEELR 185 (209)
T ss_dssp HHHHHHHHHHHHHHHHH-TSCCCHHHHHHHHHHHTTGGGSCTTTHHHHHHHHHTCCCHHHHHHHHC---SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCcHHHHHHHhC---CCHHHHHHHHH
Confidence 99999999999999999 778889999999999999999999999999999999999999999997 35678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC
Q 027433 196 TLTSLLVPFLEEIHSILRLQGL 217 (223)
Q Consensus 196 ~~~~~~~~~l~~i~~l~~~~~L 217 (223)
+++.++.+++++|+++|+++|-
T Consensus 186 ~~l~al~~v~~~i~~~~~~~~~ 207 (209)
T 3kv0_A 186 EYLVALDXIVNILXRFLESXEA 207 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999873
No 4
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=51.36 E-value=22 Score=21.11 Aligned_cols=27 Identities=11% Similarity=0.430 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHh
Q 027433 124 MVALLQRLAKDPGQKMEQAVEESYNIA 150 (223)
Q Consensus 124 i~~fl~~l~~~~~~~~~~~~~~AY~~t 150 (223)
+..||++|..+.+++++.+..+||.++
T Consensus 8 l~~~fk~iY~~gddd~kram~KS~~eS 34 (35)
T 2jtt_C 8 LMNVLKKIYEDGDDDMKRTINKAWVES 34 (35)
T ss_dssp HHHHHHHHHTTCCSSHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhc
Confidence 457899999998999999999998764
No 5
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=26.00 E-value=2.6e+02 Score=22.61 Aligned_cols=83 Identities=14% Similarity=0.140 Sum_probs=54.6
Q ss_pred HHHHhhhcchhHHHHHHHHHHHHHHHHHHhhCCcccchHHHHHHHHHHcCCCCCCCcchhHHHHHHhHHHHHHHHHHHHh
Q 027433 53 LQVLDKIGPTMLVLRQDIHQNIQRLEKFCELDPSKYANVVEILKKEASEGNARKKTSCSKAFLWLTRSLDFMVALLQRLA 132 (223)
Q Consensus 53 ~~~~d~lG~~f~~v~~Dv~~nI~kl~~~~~~~~~~~~tL~~mv~~E~~~g~~~~~~S~sr~LLwL~RaL~Fi~~fl~~l~ 132 (223)
..+++.+-.-+.++-..+...|+.|+...-.++. ..++.+... -+.++.|+|++.=....+..|.
T Consensus 175 ~~lld~ivd~y~~~l~~i~~~id~lE~~l~~~~~--~~l~~l~~l-------------rr~l~~lrr~l~p~~~vl~~L~ 239 (266)
T 2hn1_A 175 YTILDAVVDSYFEALLKISDEIEVLEDEVVSGDS--TLIGKIHSL-------------KREILAFRNAVWPLRDVLSFFT 239 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--CCCCHHHHH-------------HHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH--HHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555677777888888888876644332 455555444 2367888999988888888887
Q ss_pred cCCC----CcHHHHHHHHHHHh
Q 027433 133 KDPG----QKMEQAVEESYNIA 150 (223)
Q Consensus 133 ~~~~----~~~~~~~~~AY~~t 150 (223)
.... +....-.++.|+.+
T Consensus 240 ~~~~~~~~~~~~~~lrDv~dh~ 261 (266)
T 2hn1_A 240 RVEHELIGEEVKVYYRDVYDHA 261 (266)
T ss_dssp HCCCTTSCTTTHHHHHHHHHHH
T ss_pred hcCCccCCHHHHHHHHHHHHHH
Confidence 6432 33555677777655
No 6
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=25.09 E-value=1.6e+02 Score=19.68 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCCCCCCChhHHHHHHHH
Q 027433 11 SSEIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNL 51 (223)
Q Consensus 11 ~~~~~~~~~el~~~~~~~~~~~~~~~~~~i~~~~fl~a~~~ 51 (223)
...|-++|++|-..++. .|+..++=.+-|..+-+
T Consensus 24 ~~~iN~af~~LR~~iP~-------~~~~KlSKi~tLr~Ai~ 57 (68)
T 1mdy_A 24 LSKVNEAFETLKRSTSS-------NPNQRLPKVEILRNAIR 57 (68)
T ss_dssp HHHHHHHHHHHHTTSCS-------CTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-------CCCCCCCHHHHHHHHHH
Confidence 56789999999999972 23445554444444444
No 7
>2itb_A TRNA-(MS(2)IO(6)A)-hydroxylase, putative; putative ATTH, structural genomics, joint center for structu genomics, JCSG; 2.05A {Pseudomonas putida} SCOP: a.25.1.7
Probab=23.89 E-value=1.6e+02 Score=24.23 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=36.9
Q ss_pred ccchhhHHHHHHHHhhhC---CChHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 027433 153 PWHGWISSAAFKVALKLL---PDSVTFMNILMAKDETYDNLKEEMQTLTSLLVPFLEEIHSILRLQGLD 218 (223)
Q Consensus 153 ~yH~W~vR~~~~~Al~~l---PsR~~fl~~l~~~~e~~~~~~~~m~~~~~~~~~~l~~i~~l~~~~~L~ 218 (223)
-=|.|-=|||+..||..+ |++.+++.+|.. -+.++|.=| ++|.+++.+.|+.
T Consensus 33 ~DHA~CE~KAA~tAm~Li~rYp~~~~Lv~~m~~------LarEEL~HF--------eqVl~im~~Rgi~ 87 (206)
T 2itb_A 33 IDHKNCEFKAASTALSLIAKYNTHLDLINMMSR------LAREELVHH--------EQVLRLMKRRGVP 87 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH------HHHHHHHHH--------HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHH------HHHHHHHHH--------HHHHHHHHHcCCC
Confidence 347778889999999887 999988888862 234444433 4667777777764
No 8
>3k8p_D Protein transport protein SEC39; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Saccharomyces cerevisiae}
Probab=20.46 E-value=3.7e+02 Score=26.18 Aligned_cols=58 Identities=9% Similarity=0.098 Sum_probs=40.5
Q ss_pred ChhHHHHHHHHHHHHHhh--hc------chhHHHHH-HHH-HHHHHHHHHHhhCCcccchHHHHHHHH
Q 027433 41 PTKPFLHLCNLVLQVLDK--IG------PTMLVLRQ-DIH-QNIQRLEKFCELDPSKYANVVEILKKE 98 (223)
Q Consensus 41 ~~~~fl~a~~~l~~~~d~--lG------~~f~~v~~-Dv~-~nI~kl~~~~~~~~~~~~tL~~mv~~E 98 (223)
....|++|.+.|..+==. -| ..|+|+.= ++. ..++.|....+.||+.|..++.++.--
T Consensus 483 rl~aLL~At~aLS~YsL~L~~G~~~~~~vPFtPv~IR~v~~DPlsLIskVLEqNpkAY~~le~Ll~I~ 550 (709)
T 3k8p_D 483 KLEVLLEISDKLSHYSINLNKSHNGARDTAFKPSNILEYRDCPLDIISNLLELNPRLYKDLPTTKSLL 550 (709)
T ss_dssp HHHHHHHHHHHHTTSCCCCC---------CCCHHHHHHTTTCTHHHHHHHHHHSTTGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhceeeccCCCccccCCCCCcHHHHHhcCCHHHHHHHHHHhCcHhhhCHHHHHHHH
Confidence 467788888887744212 26 66888765 454 678888888999999999998876544
No 9
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=19.19 E-value=53 Score=24.01 Aligned_cols=47 Identities=21% Similarity=0.078 Sum_probs=33.5
Q ss_pred hHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCC
Q 027433 173 SVTFMNILMAKDETYDNLKEEMQTLTSLLVPFLEEIHSILRLQGLDMLKSK 223 (223)
Q Consensus 173 R~~fl~~l~~~~e~~~~~~~~m~~~~~~~~~~l~~i~~l~~~~~L~dl~~~ 223 (223)
+...+..+..+. -+..+++++|-- ....+..+...|.++|.+.|+.+
T Consensus 39 K~~VV~~v~~g~---lS~~EAa~ry~I-s~~ei~~W~r~y~~~G~~aLr~t 85 (101)
T 2oa4_A 39 KIAVVRGVIYGL---ITLAEAKQTYGL-SDEEFNSWVSALAEHGKDALKVT 85 (101)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHTTCS-SHHHHHHHHHHHHCCCSSSSCCH
T ss_pred HHHHHHHHHhCC---CCHHHHHHHhCC-CHHHHHHHHHHHHHHhHHHhccc
Confidence 444555554333 235677777765 77888999999999999999864
No 10
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=19.01 E-value=2.2e+02 Score=19.14 Aligned_cols=34 Identities=9% Similarity=0.032 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCCCCCCChhHHHHHHHHH
Q 027433 12 SEIRSAIEELSMFIKLKPKDNLDAPRIHIPTKPFLHLCNLV 52 (223)
Q Consensus 12 ~~~~~~~~el~~~~~~~~~~~~~~~~~~i~~~~fl~a~~~l 52 (223)
..|..+|++|...||.. +++.++-..-|..+-+.
T Consensus 25 ~~in~~f~~Lr~lvP~~-------~~~k~sK~~iL~~Ai~Y 58 (80)
T 1hlo_A 25 DHIKDSFHSLRDSVPSL-------QGEKASRAQILDKATEY 58 (80)
T ss_dssp HHHHHHHHHHHHHSGGG-------TTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCC-------CCCCccHHHHHHHHHHH
Confidence 57899999999999832 23345555555544433
Done!