Query 027434
Match_columns 223
No_of_seqs 108 out of 1145
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 09:52:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027434.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027434hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00817 tpt Tpt phosphate/ph 100.0 1.9E-30 4.1E-35 217.9 17.6 213 2-221 83-301 (302)
2 KOG1444 Nucleotide-sugar trans 100.0 2.9E-30 6.4E-35 210.5 16.6 214 2-222 95-309 (314)
3 PTZ00343 triose or hexose phos 100.0 4E-28 8.6E-33 207.5 21.5 212 2-215 132-350 (350)
4 PF08449 UAA: UAA transporter 99.9 1.8E-26 3.8E-31 193.9 19.1 210 2-219 82-303 (303)
5 KOG1441 Glucose-6-phosphate/ph 99.9 3E-28 6.4E-33 202.4 8.2 215 1-222 100-316 (316)
6 PRK11453 O-acetylserine/cystei 99.9 5.7E-25 1.2E-29 184.5 21.8 207 3-216 78-290 (299)
7 COG5070 VRG4 Nucleotide-sugar 99.9 3.2E-26 6.9E-31 177.6 12.4 211 2-221 86-304 (309)
8 PLN00411 nodulin MtN21 family 99.9 2.9E-24 6.3E-29 183.6 21.8 209 2-222 96-337 (358)
9 PRK11272 putative DMT superfam 99.9 7.4E-24 1.6E-28 177.2 21.7 199 3-217 88-289 (292)
10 TIGR00950 2A78 Carboxylate/Ami 99.9 3E-23 6.6E-28 170.3 19.9 193 2-208 65-259 (260)
11 PRK11689 aromatic amino acid e 99.9 3.9E-23 8.5E-28 173.1 20.5 192 6-216 87-290 (295)
12 PRK15430 putative chlorampheni 99.9 3.2E-22 6.9E-27 167.6 21.8 197 2-216 91-288 (296)
13 PRK10532 threonine and homoser 99.9 4E-22 8.6E-27 166.8 20.6 199 2-223 89-291 (293)
14 KOG1442 GDP-fucose transporter 99.9 6.9E-25 1.5E-29 174.7 1.6 210 2-218 120-332 (347)
15 PF06027 DUF914: Eukaryotic pr 99.9 1E-21 2.2E-26 165.2 15.7 203 2-217 97-309 (334)
16 TIGR03340 phn_DUF6 phosphonate 99.9 1.4E-20 2.9E-25 156.7 14.7 197 2-210 81-280 (281)
17 KOG1443 Predicted integral mem 99.8 2.4E-20 5.1E-25 151.1 11.9 208 2-213 102-315 (349)
18 COG0697 RhaT Permeases of the 99.8 2.1E-18 4.6E-23 142.8 21.3 195 2-214 88-288 (292)
19 PF03151 TPT: Triose-phosphate 99.8 1.1E-18 2.5E-23 132.1 13.9 147 65-213 1-153 (153)
20 KOG1581 UDP-galactose transpor 99.8 2.5E-17 5.4E-22 133.6 15.3 207 3-217 102-317 (327)
21 TIGR00688 rarD rarD protein. T 99.8 7.5E-17 1.6E-21 132.4 17.4 167 2-188 88-255 (256)
22 KOG1580 UDP-galactose transpor 99.8 2.7E-18 5.9E-23 134.7 8.1 203 2-213 103-313 (337)
23 KOG2765 Predicted membrane pro 99.8 1.4E-17 3E-22 138.5 12.6 205 2-217 177-394 (416)
24 TIGR00776 RhaT RhaT L-rhamnose 99.7 4E-16 8.6E-21 130.4 17.8 190 2-214 77-289 (290)
25 KOG1582 UDP-galactose transpor 99.7 1.5E-16 3.2E-21 127.3 12.7 204 2-215 124-334 (367)
26 PF04142 Nuc_sug_transp: Nucle 99.7 1.2E-15 2.6E-20 124.1 16.5 189 2-203 35-243 (244)
27 KOG2234 Predicted UDP-galactos 99.7 3.8E-15 8.2E-20 123.8 18.4 203 3-218 111-327 (345)
28 COG2962 RarD Predicted permeas 99.7 2E-14 4.3E-19 116.6 21.6 200 4-222 92-292 (293)
29 KOG1583 UDP-N-acetylglucosamin 99.7 2E-16 4.4E-21 126.7 7.9 202 2-214 82-315 (330)
30 KOG4510 Permease of the drug/m 99.7 4.9E-17 1.1E-21 129.7 3.7 201 1-216 114-328 (346)
31 COG5006 rhtA Threonine/homoser 99.6 3.2E-14 6.9E-19 112.9 15.6 196 3-220 90-289 (292)
32 KOG3912 Predicted integral mem 99.6 1.8E-14 3.9E-19 115.9 13.8 206 1-213 103-334 (372)
33 TIGR00803 nst UDP-galactose tr 99.5 4.3E-13 9.4E-18 107.9 12.2 188 8-211 2-222 (222)
34 COG2510 Predicted membrane pro 99.3 3.2E-11 7E-16 86.3 9.8 134 66-212 5-138 (140)
35 PF00892 EamA: EamA-like trans 99.3 3.1E-11 6.7E-16 87.6 10.1 124 74-212 1-125 (126)
36 KOG2766 Predicted membrane pro 99.2 2.8E-12 6.1E-17 102.1 0.8 196 3-216 97-302 (336)
37 KOG4314 Predicted carbohydrate 99.1 1.2E-09 2.6E-14 84.2 9.0 201 3-217 72-280 (290)
38 TIGR00688 rarD rarD protein. T 99.1 9.3E-09 2E-13 84.4 15.0 139 64-212 2-141 (256)
39 PRK15430 putative chlorampheni 99.0 1.8E-08 3.9E-13 84.5 15.5 139 61-212 5-144 (296)
40 TIGR03340 phn_DUF6 phosphonate 99.0 1.2E-08 2.6E-13 84.9 14.1 133 66-213 3-135 (281)
41 PLN00411 nodulin MtN21 family 98.8 2.3E-07 5E-12 79.8 15.0 138 64-213 13-156 (358)
42 PF06800 Sugar_transport: Suga 98.7 4E-06 8.8E-11 68.7 17.1 173 18-210 80-268 (269)
43 PRK02971 4-amino-4-deoxy-L-ara 98.6 1.5E-06 3.2E-11 63.9 13.2 122 64-217 2-126 (129)
44 PF13536 EmrE: Multidrug resis 98.6 6.2E-08 1.4E-12 69.6 5.2 59 2-61 53-111 (113)
45 COG2962 RarD Predicted permeas 98.6 1.9E-06 4.2E-11 70.5 12.9 141 62-215 5-146 (293)
46 PF13536 EmrE: Multidrug resis 98.6 1.2E-06 2.6E-11 62.9 10.5 105 109-217 5-110 (113)
47 PRK11272 putative DMT superfam 98.4 1.8E-05 3.8E-10 66.3 15.6 130 66-213 10-141 (292)
48 PF05653 Mg_trans_NIPA: Magnes 98.4 1.1E-06 2.4E-11 73.8 7.7 54 2-55 68-121 (300)
49 TIGR00950 2A78 Carboxylate/Ami 98.3 9E-06 2E-10 66.5 11.6 104 98-213 15-119 (260)
50 PF00892 EamA: EamA-like trans 98.3 8.4E-07 1.8E-11 64.0 4.7 53 2-54 72-124 (126)
51 PTZ00343 triose or hexose phos 98.3 5.3E-05 1.1E-09 65.1 16.2 134 67-213 52-186 (350)
52 PRK11689 aromatic amino acid e 98.3 3.7E-05 7.9E-10 64.5 14.8 130 64-213 4-137 (295)
53 PRK11453 O-acetylserine/cystei 98.2 8.1E-05 1.7E-09 62.5 15.3 124 67-213 7-132 (299)
54 TIGR00817 tpt Tpt phosphate/ph 98.2 8.6E-05 1.9E-09 62.4 15.2 124 75-212 13-136 (302)
55 PRK15051 4-amino-4-deoxy-L-ara 98.2 3.2E-06 7E-11 60.5 5.0 54 2-55 55-108 (111)
56 PRK15051 4-amino-4-deoxy-L-ara 98.1 2.6E-05 5.7E-10 55.8 8.9 62 152-213 47-109 (111)
57 TIGR00776 RhaT RhaT L-rhamnose 98.0 0.00012 2.6E-09 61.3 12.8 134 65-217 2-140 (290)
58 PF08449 UAA: UAA transporter 97.9 0.00039 8.4E-09 58.5 13.7 129 75-217 11-140 (303)
59 COG0697 RhaT Permeases of the 97.9 0.00093 2E-08 55.0 15.4 140 63-217 6-147 (292)
60 PF04657 DUF606: Protein of un 97.7 0.0027 5.8E-08 47.2 13.8 130 66-209 3-137 (138)
61 PRK10452 multidrug efflux syst 97.6 0.0004 8.6E-09 50.3 7.8 65 152-216 40-106 (120)
62 PRK02971 4-amino-4-deoxy-L-ara 97.6 0.00011 2.4E-09 53.9 4.8 57 1-57 65-123 (129)
63 PRK09541 emrE multidrug efflux 97.6 0.00051 1.1E-08 49.0 7.9 65 152-216 40-106 (110)
64 PF06027 DUF914: Eukaryotic pr 97.5 0.0019 4.2E-08 55.0 11.9 70 144-213 82-151 (334)
65 COG2510 Predicted membrane pro 97.5 3.9E-05 8.4E-10 55.4 0.7 53 3-55 86-138 (140)
66 PRK10532 threonine and homoser 97.4 0.0082 1.8E-07 50.2 14.2 105 63-185 11-115 (293)
67 KOG2922 Uncharacterized conser 97.3 0.0006 1.3E-08 56.8 6.3 56 2-57 82-137 (335)
68 PF04142 Nuc_sug_transp: Nucle 97.3 0.001 2.2E-08 54.3 7.2 75 143-217 19-93 (244)
69 COG2076 EmrE Membrane transpor 97.2 0.0032 7E-08 44.3 8.0 60 155-214 43-104 (106)
70 PRK10650 multidrug efflux syst 97.2 0.02 4.2E-07 40.8 11.8 62 151-212 44-107 (109)
71 PRK10452 multidrug efflux syst 97.1 0.00083 1.8E-08 48.6 4.8 55 2-56 48-103 (120)
72 PRK11431 multidrug efflux syst 97.1 0.0036 7.7E-08 44.2 7.9 54 160-213 48-102 (105)
73 PF05653 Mg_trans_NIPA: Magnes 97.0 0.0057 1.2E-07 51.5 9.3 117 62-212 5-121 (300)
74 PRK09541 emrE multidrug efflux 97.0 0.0016 3.4E-08 46.5 4.8 55 2-56 48-103 (110)
75 PRK11431 multidrug efflux syst 96.9 0.0021 4.5E-08 45.4 4.7 54 2-55 47-101 (105)
76 PRK10650 multidrug efflux syst 96.9 0.0023 5E-08 45.5 4.8 53 2-54 53-106 (109)
77 PRK13499 rhamnose-proton sympo 96.7 0.31 6.7E-06 41.8 19.7 207 4-213 93-341 (345)
78 PF03151 TPT: Triose-phosphate 96.7 0.0033 7.1E-08 47.0 4.9 53 3-55 100-152 (153)
79 PF00893 Multi_Drug_Res: Small 96.6 0.0088 1.9E-07 41.3 6.2 51 154-204 41-93 (93)
80 KOG4510 Permease of the drug/m 96.6 0.0007 1.5E-08 55.1 0.6 71 145-215 101-171 (346)
81 COG2076 EmrE Membrane transpor 96.5 0.0067 1.5E-07 42.7 5.3 54 3-56 49-103 (106)
82 COG3238 Uncharacterized protei 96.5 0.17 3.8E-06 37.9 12.8 139 63-214 4-147 (150)
83 KOG2234 Predicted UDP-galactos 96.3 0.16 3.5E-06 43.2 12.9 137 70-212 21-163 (345)
84 PRK13499 rhamnose-proton sympo 96.2 0.096 2.1E-06 44.9 11.4 138 63-216 6-156 (345)
85 COG4975 GlcU Putative glucose 96.1 0.00034 7.4E-09 56.2 -3.5 192 3-214 78-286 (288)
86 PF00893 Multi_Drug_Res: Small 96.0 0.0069 1.5E-07 41.8 3.0 46 2-47 47-93 (93)
87 COG5006 rhtA Threonine/homoser 95.8 0.017 3.7E-07 46.8 4.9 53 3-55 229-281 (292)
88 PF06800 Sugar_transport: Suga 95.7 0.15 3.2E-06 42.1 10.1 80 141-220 45-129 (269)
89 KOG2765 Predicted membrane pro 93.6 0.08 1.7E-06 45.4 3.6 75 144-218 162-236 (416)
90 PF10639 UPF0546: Uncharacteri 93.4 0.059 1.3E-06 38.5 2.1 51 4-54 61-112 (113)
91 PF06379 RhaT: L-rhamnose-prot 92.0 5.5 0.00012 34.1 12.3 139 63-219 6-159 (344)
92 PF10639 UPF0546: Uncharacteri 91.4 0.53 1.1E-05 33.6 4.9 50 161-210 61-111 (113)
93 KOG4314 Predicted carbohydrate 91.1 0.19 4E-06 39.5 2.5 61 155-215 67-127 (290)
94 KOG1580 UDP-galactose transpor 90.7 1.6 3.4E-05 35.4 7.4 59 160-218 104-162 (337)
95 KOG1581 UDP-galactose transpor 90.2 8 0.00017 32.6 11.4 75 143-217 85-159 (327)
96 KOG2922 Uncharacterized conser 88.1 0.13 2.8E-06 43.2 -0.4 120 61-214 18-137 (335)
97 COG4975 GlcU Putative glucose 87.8 0.26 5.7E-06 40.0 1.2 135 65-219 3-142 (288)
98 PF07857 DUF1632: CEO family ( 85.8 2 4.4E-05 35.3 5.4 130 65-216 1-137 (254)
99 PRK02237 hypothetical protein; 84.0 2.2 4.7E-05 30.1 4.1 47 169-215 61-107 (109)
100 PF02694 UPF0060: Uncharacteri 83.0 2.1 4.5E-05 30.1 3.6 47 170-216 60-106 (107)
101 TIGR02865 spore_II_E stage II 74.0 87 0.0019 30.2 15.0 45 10-54 10-54 (764)
102 PF04342 DUF486: Protein of un 73.7 3.5 7.6E-05 28.9 2.5 29 182-210 77-105 (108)
103 PRK02237 hypothetical protein; 71.9 9.1 0.0002 27.0 4.3 35 22-56 71-105 (109)
104 KOG1441 Glucose-6-phosphate/ph 71.9 6.1 0.00013 33.6 4.1 56 141-196 83-138 (316)
105 PF02694 UPF0060: Uncharacteri 70.4 9 0.0002 27.0 4.0 37 21-57 68-104 (107)
106 COG3169 Uncharacterized protei 68.4 37 0.0008 23.6 7.1 64 148-211 41-113 (116)
107 PF04657 DUF606: Protein of un 66.1 12 0.00027 27.6 4.3 49 5-53 85-138 (138)
108 PF06946 Phage_holin_5: Phage 66.1 40 0.00087 23.1 7.0 61 160-220 23-87 (93)
109 PF04342 DUF486: Protein of un 65.7 9.9 0.00021 26.7 3.4 32 23-54 75-106 (108)
110 COG1742 Uncharacterized conser 64.0 13 0.00029 26.0 3.8 46 170-215 61-106 (109)
111 PF11346 DUF3149: Protein of u 60.2 11 0.00025 21.8 2.5 35 189-223 7-42 (42)
112 KOG1444 Nucleotide-sugar trans 57.8 1.2E+02 0.0026 25.8 12.6 129 66-211 14-147 (314)
113 KOG3912 Predicted integral mem 56.7 37 0.00081 28.5 5.8 66 144-212 92-157 (372)
114 COG3086 RseC Positive regulato 55.7 37 0.00081 25.3 5.1 22 185-209 97-118 (150)
115 KOG2766 Predicted membrane pro 52.1 3.1 6.7E-05 34.2 -1.1 68 144-211 81-148 (336)
116 COG3169 Uncharacterized protei 50.9 41 0.00088 23.4 4.3 30 25-54 84-113 (116)
117 KOG1442 GDP-fucose transporter 49.6 10 0.00022 31.7 1.5 49 160-208 121-169 (347)
118 PF04246 RseC_MucC: Positive r 48.6 28 0.00062 25.3 3.7 42 169-211 69-113 (135)
119 COG1742 Uncharacterized conser 48.1 30 0.00065 24.3 3.4 37 21-57 69-105 (109)
120 PRK12873 ubiA prenyltransferas 46.5 1.8E+02 0.0039 24.5 16.0 70 42-125 96-165 (294)
121 PF02439 Adeno_E3_CR2: Adenovi 45.7 29 0.00064 19.5 2.5 24 198-221 13-36 (38)
122 COG5070 VRG4 Nucleotide-sugar 44.7 36 0.00078 27.6 3.8 34 11-44 251-284 (309)
123 PF15102 TMEM154: TMEM154 prot 43.2 11 0.00024 28.1 0.8 24 198-221 66-89 (146)
124 PF07444 Ycf66_N: Ycf66 protei 41.2 31 0.00067 23.2 2.6 27 191-217 3-29 (84)
125 PRK10862 SoxR reducing system 40.4 80 0.0017 23.8 5.1 17 197-213 106-122 (154)
126 PF05545 FixQ: Cbb3-type cytoc 40.3 25 0.00054 20.8 1.9 18 203-220 20-37 (49)
127 KOG1583 UDP-N-acetylglucosamin 39.2 16 0.00035 30.5 1.2 49 172-220 96-144 (330)
128 PF15055 DUF4536: Domain of un 37.3 23 0.00051 21.0 1.4 22 199-220 9-30 (47)
129 COG2209 NqrE Na+-transporting 35.7 1E+02 0.0022 23.4 4.8 83 24-107 91-181 (198)
130 cd01324 cbb3_Oxidase_CcoQ Cyto 35.5 20 0.00044 21.3 0.9 20 201-220 19-38 (48)
131 TIGR00544 lgt prolipoprotein d 35.3 33 0.00071 28.6 2.5 29 193-221 246-274 (278)
132 KOG4812 Golgi-associated prote 34.5 1.5E+02 0.0034 24.1 6.0 19 192-210 218-236 (262)
133 TIGR01167 LPXTG_anchor LPXTG-m 33.7 31 0.00066 18.3 1.4 12 194-205 11-22 (34)
134 COG4657 RnfA Predicted NADH:ub 31.2 2.4E+02 0.0053 21.6 9.1 16 63-78 102-117 (193)
135 PF04971 Lysis_S: Lysis protei 31.0 63 0.0014 20.8 2.7 8 191-198 26-33 (68)
136 PRK12437 prolipoprotein diacyl 30.7 41 0.00089 27.8 2.3 23 193-215 235-257 (269)
137 PRK00052 prolipoprotein diacyl 28.8 53 0.0011 27.2 2.7 24 193-216 237-260 (269)
138 PF02529 PetG: Cytochrome B6-F 28.7 45 0.00097 18.6 1.5 20 203-222 16-35 (37)
139 PF05961 Chordopox_A13L: Chord 28.3 62 0.0014 20.7 2.3 22 197-218 6-27 (68)
140 PF04306 DUF456: Protein of un 28.2 2.5E+02 0.0054 20.7 10.5 71 140-220 32-104 (140)
141 PRK13108 prolipoprotein diacyl 28.1 3.6E+02 0.0077 24.4 7.9 25 193-217 254-278 (460)
142 PF11023 DUF2614: Protein of u 27.0 1.7E+02 0.0036 20.9 4.5 22 34-55 6-27 (114)
143 PRK00665 petG cytochrome b6-f 25.4 88 0.0019 17.4 2.2 19 203-221 16-34 (37)
144 PF12794 MscS_TM: Mechanosensi 25.4 3.4E+02 0.0074 23.2 7.1 66 60-125 154-219 (340)
145 KOG1623 Multitransmembrane pro 24.4 3.3E+02 0.0072 22.3 6.4 90 22-117 81-176 (243)
146 TIGR00803 nst UDP-galactose tr 24.2 99 0.0021 24.3 3.4 45 172-216 9-53 (222)
147 CHL00008 petG cytochrome b6/f 24.2 96 0.0021 17.2 2.2 19 203-221 16-34 (37)
148 PF15099 PIRT: Phosphoinositid 24.2 44 0.00095 24.3 1.2 15 143-157 58-72 (129)
149 COG3086 RseC Positive regulato 24.1 2E+02 0.0044 21.5 4.7 22 10-31 74-95 (150)
150 PF08693 SKG6: Transmembrane a 23.4 43 0.00094 19.1 0.8 17 200-216 22-38 (40)
151 PF11044 TMEMspv1-c74-12: Plec 23.1 89 0.0019 18.2 2.1 7 206-212 21-27 (49)
152 PF12805 FUSC-like: FUSC-like 22.6 4.4E+02 0.0095 21.7 9.1 18 195-212 69-86 (284)
153 PRK02935 hypothetical protein; 22.2 1.1E+02 0.0024 21.5 2.8 23 33-55 6-28 (110)
154 PF02355 SecD_SecF: Protein ex 21.9 3.9E+02 0.0084 20.8 8.1 36 170-205 59-94 (189)
155 PF07213 DAP10: DAP10 membrane 21.5 78 0.0017 21.0 1.8 19 203-221 49-67 (79)
156 PRK06638 NADH:ubiquinone oxido 21.3 4.1E+02 0.0088 20.8 11.2 34 183-216 134-169 (198)
157 PF11384 DUF3188: Protein of u 21.2 74 0.0016 19.0 1.6 19 197-215 29-47 (49)
158 COG4657 RnfA Predicted NADH:ub 20.7 3.3E+02 0.0071 20.9 5.2 49 148-197 79-132 (193)
159 PF09964 DUF2198: Uncharacteri 20.6 2.6E+02 0.0057 18.3 5.7 35 188-222 40-74 (74)
160 PF10754 DUF2569: Protein of u 20.3 3.7E+02 0.0079 19.9 8.9 24 63-86 120-143 (149)
No 1
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.97 E-value=1.9e-30 Score=217.91 Aligned_cols=213 Identities=15% Similarity=0.201 Sum_probs=172.6
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchhhHHHHHHHHHHHHHHHH
Q 027434 2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSL 81 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~~~~~~G~~~~l~a~~~~a~~~v 81 (223)
|.|++|++++.+++++++.|+++++++++++|||++++++.+++++++|+.+....|.+++..|++++++|++++|+|.+
T Consensus 83 ~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v 162 (302)
T TIGR00817 83 NVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNI 162 (302)
T ss_pred HHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999988777777888899999999999999999
Q ss_pred HHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccc-cCCC----CccchHHHHHHHHHHHH-HHHH
Q 027434 82 TLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLS-RTPL----LRLPSFWLVMTLSGFLG-LAIS 155 (223)
Q Consensus 82 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~-~~~~ 155 (223)
..||..++ .+.++.+...|++..+...+.+.....|+.+... +... ......+...+..+... ...+
T Consensus 163 ~~k~~~~~-------~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (302)
T TIGR00817 163 FSKKAMTI-------KSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQ 235 (302)
T ss_pred HHHHhhcc-------CCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH
Confidence 99998652 2578889999999888888888877665432111 1000 11112232233333322 2233
Q ss_pred HHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhhhhhc
Q 027434 156 FTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 221 (223)
Q Consensus 156 ~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~ 221 (223)
...+.++|++||+++++.+++||++++++|++++||++|..+++|+++++.|+++|++.|.||++.
T Consensus 236 ~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~~ 301 (302)
T TIGR00817 236 QVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPKP 301 (302)
T ss_pred HHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcCC
Confidence 444578999999999999999999999999999999999999999999999999999887666554
No 2
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.9e-30 Score=210.50 Aligned_cols=214 Identities=38% Similarity=0.649 Sum_probs=196.0
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchhhHHHHHHHHHHHHHHHH
Q 027434 2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSL 81 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~~~~~~G~~~~l~a~~~~a~~~v 81 (223)
..+++|+|+|.++++|+.+|+++++.+..++|.|+++..+.++..+.+|......+|.+++..|+.|++.+.++.+.+.+
T Consensus 95 ~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a~~~v 174 (314)
T KOG1444|consen 95 SKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTAAFVV 174 (314)
T ss_pred cccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhcccccc-ccCCCCccchHHHHHHHHHHHHHHHHHHHHH
Q 027434 82 TLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYL-SRTPLLRLPSFWLVMTLSGFLGLAISFTSMW 160 (223)
Q Consensus 82 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (223)
..|+..+. .+.+.+++++|+++.++|.+.+..+++||++.. .+.+.+.++.+|..+.++|++++.++|+.++
T Consensus 175 ~~kk~vd~-------~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~ 247 (314)
T KOG1444|consen 175 YVKKSVDS-------ANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSFL 247 (314)
T ss_pred HHHHhhcc-------ccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999874 467999999999999999999999999998833 3455677777889999999999999999999
Q ss_pred HHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhhhhhcC
Q 027434 161 FLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQS 222 (223)
Q Consensus 161 ~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~~ 222 (223)
|.+..|+++.++++..++..+.+.++.++|++.++...+|..+.++|..+|++.+.|||+++
T Consensus 248 ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~ 309 (314)
T KOG1444|consen 248 CTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQP 309 (314)
T ss_pred HHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCC
Confidence 99999999999999666666666666677899999999999999999999999998877765
No 3
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.96 E-value=4e-28 Score=207.52 Aligned_cols=212 Identities=14% Similarity=0.218 Sum_probs=174.1
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchhhHHHHHHHHHHHHHHHH
Q 027434 2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSL 81 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~~~~~~G~~~~l~a~~~~a~~~v 81 (223)
+.|+++++++++++++++.|+++++++++++|||++++++.+++++++|+.+...+|.++++.|++++++|++++|.|++
T Consensus 132 ~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~i 211 (350)
T PTZ00343 132 VISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSSLRSI 211 (350)
T ss_pred HHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999888888998999999999999999999
Q ss_pred HHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhcccc--ccc-c----CCCCccchHHHHHHHHHHHHHHH
Q 027434 82 TLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVD--YLS-R----TPLLRLPSFWLVMTLSGFLGLAI 154 (223)
Q Consensus 82 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~----~~~~~~~~~~~~~~~~~~~~~~~ 154 (223)
+.||.+++.+. ...+.++.+...+..+.+..++++.....|... ..+ + ...+....++..++.+++..+..
T Consensus 212 ~~k~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~ 289 (350)
T PTZ00343 212 FAKKTMKNKSE--IGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLY 289 (350)
T ss_pred HHHHHhccccc--ccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHH
Confidence 99998764210 011355666666667778888777766554321 111 0 11111122334566677777888
Q ss_pred HHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhh
Q 027434 155 SFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 215 (223)
Q Consensus 155 ~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~ 215 (223)
+.+.|+++++++|.++++.+++||++++++|++++||++|..+++|.++++.|+++|++.|
T Consensus 290 n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k 350 (350)
T PTZ00343 290 NEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK 350 (350)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence 8888889999999999999999999999999999999999999999999999999998863
No 4
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.95 E-value=1.8e-26 Score=193.94 Aligned_cols=210 Identities=20% Similarity=0.269 Sum_probs=180.7
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccc----cc------hhhHHHHHH
Q 027434 2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLS----FH------AVGYAWQII 71 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~~----~~------~~G~~~~l~ 71 (223)
|.|++|+|.|+++++|++.|+++++++.+++|+|++++++.+++++++|+.+....|.+ .+ ..|+++.++
T Consensus 82 ~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~ 161 (303)
T PF08449_consen 82 NAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLL 161 (303)
T ss_pred HHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999998765421 11 239999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHH--hccccccccCCCCccchHHHHHHHHHH
Q 027434 72 NCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIV--FNEVDYLSRTPLLRLPSFWLVMTLSGF 149 (223)
Q Consensus 72 a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (223)
+.++.|.+.+++||..+++ +.+++++++|++..+.|...+.... .+|..+..++... .+..+..++..+.
T Consensus 162 sl~~~a~~~~~qe~~~~~~-------~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~-~p~~~~~l~~~s~ 233 (303)
T PF08449_consen 162 SLLLDAFTGVYQEKLFKKY-------GKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISA-HPSVLLYLLLFSL 233 (303)
T ss_pred HHHHHHHHHHHHHHHHHHh-------CCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHH-hHHHHHHHHHHHH
Confidence 9999999999999998853 5688999999999999999988887 6666554433221 2334566677777
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhhhh
Q 027434 150 LGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWER 219 (223)
Q Consensus 150 ~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~ 219 (223)
++..-....+.++++.||++.+++..++++.++++++++||+++++.+|+|.++++.|..+|.+.|+|||
T Consensus 234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~ 303 (303)
T PF08449_consen 234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN 303 (303)
T ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence 7766666667789999999999999999999999999999999999999999999999999999988875
No 5
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.95 E-value=3e-28 Score=202.43 Aligned_cols=215 Identities=19% Similarity=0.361 Sum_probs=185.6
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchhhHHHHHHHHHHHHHHH
Q 027434 1 MSLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYS 80 (223)
Q Consensus 1 ~~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~~~~~~G~~~~l~a~~~~a~~~ 80 (223)
+|.|++|+|++++|++|++.|+++.+++.++.+|+.++..+++++.+..|+.+.+.+|.++|+.|+..++++.+..++++
T Consensus 100 ~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al~~ 179 (316)
T KOG1441|consen 100 GNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFALRN 179 (316)
T ss_pred cchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHH-HHHHHhcccccc-ccCCCCccchHHHHHHHHHHHHHHHHHHH
Q 027434 81 LTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGV-LLVIVFNEVDYL-SRTPLLRLPSFWLVMTLSGFLGLAISFTS 158 (223)
Q Consensus 81 v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (223)
++.|+.+++. ..++++.+++.|++.++...++ |.....+..... .....+ +..++..+ +..++.++.+.+.
T Consensus 180 I~~~~ll~~~-----~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~sv~~f~~Nls~ 252 (316)
T KOG1441|consen 180 ILSKKLLTSK-----GESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPW-FVTFLILL-LNSVLAFLLNLSA 252 (316)
T ss_pred HHHHHhhhcc-----ccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeecccc-chhhHHHH-HHHHHHHHHHHHH
Confidence 9999998642 2579999999999998888888 544332221110 011112 12234333 3449999999999
Q ss_pred HHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhhhhhcC
Q 027434 159 MWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQS 222 (223)
Q Consensus 159 ~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~~ 222 (223)
|+++.++||+++++.+.+|.++.++.|+++|+|+.|+.+..|+++.+.|+++|++.|.|+++++
T Consensus 253 f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~~ 316 (316)
T KOG1441|consen 253 FLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKGK 316 (316)
T ss_pred HHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 9999999999999999999999999999999999999999999999999999999999988764
No 6
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.94 E-value=5.7e-25 Score=184.51 Aligned_cols=207 Identities=9% Similarity=0.080 Sum_probs=159.6
Q ss_pred ccccc-cchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccc---cccchhhHHHHHHHHHHHHH
Q 027434 3 LSLKY-INVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD---LSFHAVGYAWQIINCFLTAS 78 (223)
Q Consensus 3 ~al~~-~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d---~~~~~~G~~~~l~a~~~~a~ 78 (223)
.+++| .|++.+.++.++.|+++.+++++++|||++++++++++++++|+.+...++ .+.+..|+.+++.++++||.
T Consensus 78 ~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a~ 157 (299)
T PRK11453 78 CAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWAC 157 (299)
T ss_pred HHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHHH
Confidence 46677 689999999999999999999999999999999999999999999876432 23345799999999999999
Q ss_pred HHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhcccccc-ccCCCCccchHHHHHHHHHHHHHHHHHH
Q 027434 79 YSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYL-SRTPLLRLPSFWLVMTLSGFLGLAISFT 157 (223)
Q Consensus 79 ~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (223)
|.+..||..++. .+........++...+...........++.... .....+ +...|..+++.++++..++|.
T Consensus 158 ~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~i~~t~~~~~ 230 (299)
T PRK11453 158 GNIFNKKIMSHS------TRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTI-DMTTILSLMYLAFVATIVGYG 230 (299)
T ss_pred HHHHHHHHhccc------CccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccC-CHHHHHHHHHHHHHHHHHHHH
Confidence 999999975421 122223334454444443333333333332211 011111 334578899999999999999
Q ss_pred HH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhh
Q 027434 158 SM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKM 216 (223)
Q Consensus 158 ~~-~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 216 (223)
.+ +.+|+.+|.+++.+.+++|+++.++|++++||+++..+++|+++++.|+++..+.++
T Consensus 231 l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 231 IWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 87 678999999999999999999999999999999999999999999999987654333
No 7
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.94 E-value=3.2e-26 Score=177.56 Aligned_cols=211 Identities=31% Similarity=0.578 Sum_probs=188.0
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccc--------cchhhHHHHHHHH
Q 027434 2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLS--------FHAVGYAWQIINC 73 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~~--------~~~~G~~~~l~a~ 73 (223)
++++||+++|.+++.++++.+.++..+..++|.|.+.....+..++++..+...|+|.+ .| .|++|+..++
T Consensus 86 SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN-~GY~Wm~~Nc 164 (309)
T COG5070 86 SKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILN-PGYLWMFTNC 164 (309)
T ss_pred ccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccC-CceEEEehhh
Confidence 57999999999999999999999999999999999999999999999999999999873 34 8999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHH
Q 027434 74 FLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLA 153 (223)
Q Consensus 74 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (223)
+..|+|-+.+|+..+- .+...++.++|+|+.+.|+++..++.+|||++..-..+. ......++.++|++++.
T Consensus 165 lssaafVL~mrkri~l-------tNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl-~~d~l~am~ISgl~svg 236 (309)
T COG5070 165 LSSAAFVLIMRKRIKL-------TNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNL-SVDSLMAMFISGLCSVG 236 (309)
T ss_pred HhHHHHHHHHHHhhcc-------cccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCC-ChHHHHHHHHHHHHHhh
Confidence 9999999999998763 245678999999999999999999999999865322222 22224578899999999
Q ss_pred HHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhhhhhc
Q 027434 154 ISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 221 (223)
Q Consensus 154 ~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~ 221 (223)
++|+.-||+|.+|++++|+++.+++....+.|.++|||+.+...+..+.+...+..+|.+++.||+++
T Consensus 237 iSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q~ 304 (309)
T COG5070 237 ISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQN 304 (309)
T ss_pred hhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999988765543
No 8
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.93 E-value=2.9e-24 Score=183.56 Aligned_cols=209 Identities=12% Similarity=0.141 Sum_probs=156.9
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHH------hCcccChhHHHHHHHHHHhhhhhccc-cc---------------
Q 027434 2 SLSLKYINVAMVTVLKNVTNVITAVGEMYL------FNKRHDNRVWAALFLMIISAISGGIT-DL--------------- 59 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~------~~e~~s~~~~~~l~l~~~Gv~~~~~~-d~--------------- 59 (223)
+.+++|+|++.+.++.++.|+++.++++++ +|||++++++.|++++++|+.+.... +.
T Consensus 96 ~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~ 175 (358)
T PLN00411 96 YIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQ 175 (358)
T ss_pred HHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccc
Confidence 468999999999999999999999999999 69999999999999999999876531 11
Q ss_pred --------ccc-hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhcccc-cc
Q 027434 60 --------SFH-AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVD-YL 129 (223)
Q Consensus 60 --------~~~-~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 129 (223)
..+ ..|.++++.|+++||.|++..|+..++.. +.....+++..++.....+.....++.+ ..
T Consensus 176 ~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~--------~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~ 247 (358)
T PLN00411 176 LSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYP--------AAFTVSFLYTVCVSIVTSMIGLVVEKNNPSV 247 (358)
T ss_pred cccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------cHhHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 112 35999999999999999999999866421 2223344444443333433344433211 11
Q ss_pred ccCCCCccchHHHHHHHHHHHHHHHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHH
Q 027434 130 SRTPLLRLPSFWLVMTLSGFLGLAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAG 208 (223)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~ 208 (223)
+. ..+ +...+ .+++.++++ .++|..+ +++|+.+|.++++..+++|++++++|++++||++++.+++|+++++.|+
T Consensus 248 ~~-~~~-~~~~~-~i~y~~i~t-~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv 323 (358)
T PLN00411 248 WI-IHF-DITLI-TIVTMAIIT-SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGF 323 (358)
T ss_pred ce-ecc-chHHH-HHHHHHHHH-HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 11 111 22222 456666654 4577765 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhcC
Q 027434 209 VFFARAKMWERSQS 222 (223)
Q Consensus 209 ~~~~~~~~~~~~~~ 222 (223)
++.++.++||.|++
T Consensus 324 ~l~~~~~~~~~~~~ 337 (358)
T PLN00411 324 YAVMWGKANEEKDQ 337 (358)
T ss_pred HHHHhhhhhhhhhc
Confidence 99887776655543
No 9
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.93 E-value=7.4e-24 Score=177.19 Aligned_cols=199 Identities=13% Similarity=0.029 Sum_probs=160.8
Q ss_pred ccc-cccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc-ccccchhhHHHHHHHHHHHHHHH
Q 027434 3 LSL-KYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT-DLSFHAVGYAWQIINCFLTASYS 80 (223)
Q Consensus 3 ~al-~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~-d~~~~~~G~~~~l~a~~~~a~~~ 80 (223)
.+. +++|++.++++.++.|+++.+++.+ +|||++++++.+++++++|+.+...+ +.+.+..|++++++++++||.|.
T Consensus 88 ~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~ 166 (292)
T PRK11272 88 VAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGS 166 (292)
T ss_pred HHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHH
Confidence 345 8899999999999999999999985 69999999999999999999987643 34455689999999999999999
Q ss_pred HHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHHHHHHH-
Q 027434 81 LTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSM- 159 (223)
Q Consensus 81 v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 159 (223)
+..||..++ ++.....++...+.+.+.+.....++... . ..+...|..+++.++++..++|..|
T Consensus 167 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~i~~l~i~~s~~~~~l~~ 231 (292)
T PRK11272 167 VWSSRLPLP----------VGMMAGAAEMLAAGVVLLIASLLSGERLT--A---LPTLSGFLALGYLAVFGSIIAISAYM 231 (292)
T ss_pred HHHHhcCCC----------cchHHHHHHHHHHHHHHHHHHHHcCCccc--c---cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999986431 22334455556666666655544333211 1 1123447788888999988888876
Q ss_pred HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhh
Q 027434 160 WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW 217 (223)
Q Consensus 160 ~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~ 217 (223)
+++|+.++.+.+...+++|+.+.+++++++||+++..+++|+++++.|+++.+..++|
T Consensus 232 ~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~ 289 (292)
T PRK11272 232 YLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL 289 (292)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6899999999999999999999999999999999999999999999999988776665
No 10
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.92 E-value=3e-23 Score=170.29 Aligned_cols=193 Identities=14% Similarity=0.085 Sum_probs=157.6
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc-ccccchhhHHHHHHHHHHHHHHH
Q 027434 2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT-DLSFHAVGYAWQIINCFLTASYS 80 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~-d~~~~~~G~~~~l~a~~~~a~~~ 80 (223)
+.|++|+|++.++++.++.|+++++++.+++|||++++++.+++++++|+.+...+ +.+.+..|+.++++++++++.+.
T Consensus 65 ~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~ 144 (260)
T TIGR00950 65 FVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGT 144 (260)
T ss_pred HHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999887544 34455689999999999999999
Q ss_pred HHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHHHHHHH-
Q 027434 81 LTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSM- 159 (223)
Q Consensus 81 v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 159 (223)
+..|+..++. +.++.....+.+..+.+.+.+.....++... . +...|..+++.++++..++|..+
T Consensus 145 ~~~k~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~ 210 (260)
T TIGR00950 145 VLYKRLVKKE-------GPELLQFTGWVLLLGALLLLPFAWFLGPNPQ------A-LSLQWGALLYLGLIGTALAYFLWN 210 (260)
T ss_pred HHHhHHhhcC-------CchHHHHHHHHHHHHHHHHHHHHHhcCCCCC------c-chHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999986531 2223333334566666666666554433211 1 22346667888888888888876
Q ss_pred HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHH
Q 027434 160 WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAG 208 (223)
Q Consensus 160 ~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~ 208 (223)
+++|+.++.+++...+++|+.+.+++++++||+++..+++|.++++.|+
T Consensus 211 ~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 211 KGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999999885
No 11
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.92 E-value=3.9e-23 Score=173.07 Aligned_cols=192 Identities=10% Similarity=0.071 Sum_probs=146.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc-----------ccchhhHHHHHHHHH
Q 027434 6 KYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL-----------SFHAVGYAWQIINCF 74 (223)
Q Consensus 6 ~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~-----------~~~~~G~~~~l~a~~ 74 (223)
++.+...+.++.++.|+++.+++++++|||++++++.+++++++|+.+...+|. +.+..|+.+++.+++
T Consensus 87 ~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~ 166 (295)
T PRK11689 87 TRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIGAF 166 (295)
T ss_pred ccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHHHH
Confidence 456778889999999999999999999999999999999999999988765432 123469999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHH
Q 027434 75 LTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAI 154 (223)
Q Consensus 75 ~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (223)
+||.|.++.||..++ .++..... ..+...+.+.....+++. . .+ +...|..+++.++ +..+
T Consensus 167 ~~A~~~v~~k~~~~~---------~~~~~~~~---~~~~~~l~~~~~~~~~~~--~---~~-~~~~~~~l~~~~~-~t~~ 227 (295)
T PRK11689 167 IWAAYCNVTRKYARG---------KNGITLFF---ILTALALWIKYFLSPQPA--M---VF-SLPAIIKLLLAAA-AMGF 227 (295)
T ss_pred HHHHHHHHHhhccCC---------CCchhHHH---HHHHHHHHHHHHHhcCcc--c---cC-CHHHHHHHHHHHH-HHHH
Confidence 999999999997542 34433322 122222222222222211 1 11 2233666677775 5667
Q ss_pred HHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhh
Q 027434 155 SFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKM 216 (223)
Q Consensus 155 ~~~~~-~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 216 (223)
+|..+ +++|+.+|.+++...+++|++++++|++++||+++..+++|+++++.|+......++
T Consensus 228 ~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~ 290 (295)
T PRK11689 228 GYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR 290 (295)
T ss_pred HHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence 77776 789999999999999999999999999999999999999999999999887755444
No 12
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.91 E-value=3.2e-22 Score=167.65 Aligned_cols=197 Identities=11% Similarity=0.099 Sum_probs=141.4
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchhhHHHHHHHHHHHHHHHH
Q 027434 2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSL 81 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~~~~~~G~~~~l~a~~~~a~~~v 81 (223)
++|++++|++.++++.++.|+++.+++++++|||++++++.+++++++|+.+...++.+. ..++++++++||.|.+
T Consensus 91 ~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~----~~~~l~aa~~~a~~~i 166 (296)
T PRK15430 91 IWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL----PIIALGLAFSFAFYGL 166 (296)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc----cHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999876433222 2468889999999999
Q ss_pred HHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHHHHHHH-H
Q 027434 82 TLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSM-W 160 (223)
Q Consensus 82 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 160 (223)
..||..++ ...+......+....+.+. .....+... .... ..+...+..+.+.|+. ..+.|.++ +
T Consensus 167 ~~r~~~~~-------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~-~~~~~~~~~~~~~g~~-t~i~~~~~~~ 232 (296)
T PRK15430 167 VRKKIAVE-------AQTGMLIETMWLLPVAAIY----LFAIADSST-SHMG-QNPMSLNLLLIAAGIV-TTVPLLCFTA 232 (296)
T ss_pred HHHhcCCC-------CchhHHHHHHHHHHHHHHH----HHHHccCCc-cccc-CCcHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 98886331 1111122222322222222 111111111 0111 1111123344445554 44666665 7
Q ss_pred HHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhh
Q 027434 161 FLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKM 216 (223)
Q Consensus 161 ~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 216 (223)
++|+.+|..+|...+++|+++.++|++++||+++..+++|+++++.|+.+...+..
T Consensus 233 a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~ 288 (296)
T PRK15430 233 AATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAI 288 (296)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999888777655444
No 13
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.90 E-value=4e-22 Score=166.84 Aligned_cols=199 Identities=13% Similarity=0.043 Sum_probs=153.0
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc--c-cccchhhHHHHHHHHHHHHH
Q 027434 2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT--D-LSFHAVGYAWQIINCFLTAS 78 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~--d-~~~~~~G~~~~l~a~~~~a~ 78 (223)
+++++|+|++.++++.++.|+++.+++ +||+++ ...+.++++|+.+.... | .+.+..|++++++++++||.
T Consensus 89 ~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~ 162 (293)
T PRK10532 89 YLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAI 162 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--HHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHH
Confidence 468999999999999999999998887 366554 44567789999876432 2 23456799999999999999
Q ss_pred HHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHHHHHH
Q 027434 79 YSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTS 158 (223)
Q Consensus 79 ~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (223)
|.+..||..++ .++... .+....+...+.+.....++ .. . .++..|..+++.|+++..++|..
T Consensus 163 ~~v~~r~~~~~---------~~~~~~-~~~~~~~~~~l~~~~~~~~~-~~-----~-~~~~~~~~~l~lgv~~t~~~~~l 225 (293)
T PRK10532 163 YILSGQRAGAE---------HGPATV-AIGSLIAALIFVPIGALQAG-EA-----L-WHWSILPLGLAVAILSTALPYSL 225 (293)
T ss_pred HHHHHHHHhcc---------CCchHH-HHHHHHHHHHHHHHHHHccC-cc-----c-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998542 344443 34445555444444433221 11 1 12233556678899999999988
Q ss_pred H-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhhhhhcCC
Q 027434 159 M-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQSG 223 (223)
Q Consensus 159 ~-~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~~~ 223 (223)
+ +.+|+.+|.+++...++||++++++|++++||+++..+++|+++++.|++.+...++|+.|.+|
T Consensus 226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~~~ 291 (293)
T PRK10532 226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKIKE 291 (293)
T ss_pred HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 5 7899999999999999999999999999999999999999999999999999887777766654
No 14
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=6.9e-25 Score=174.75 Aligned_cols=210 Identities=21% Similarity=0.301 Sum_probs=193.4
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccc---cccchhhHHHHHHHHHHHHH
Q 027434 2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD---LSFHAVGYAWQIINCFLTAS 78 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d---~~~~~~G~~~~l~a~~~~a~ 78 (223)
|++|+|++++++.+-|++..+|+.++.+.++|+|-+.....++.++++|-.+-...| ....+.|.++++.|.++.|+
T Consensus 120 nlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGVlaSl~vAl 199 (347)
T KOG1442|consen 120 NLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGVLASLAVAL 199 (347)
T ss_pred ceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999887766 45679999999999999999
Q ss_pred HHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHHHHHH
Q 027434 79 YSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTS 158 (223)
Q Consensus 79 ~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (223)
..++.||..... .-.-|.+..|+|+.+..+.++...+.||.+.+..++...+..+|..+.++|++++.++|..
T Consensus 200 naiytkk~l~~v-------~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvT 272 (347)
T KOG1442|consen 200 NAIYTKKVLPPV-------GDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVT 272 (347)
T ss_pred HHHhhheecccc-------cCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhhee
Confidence 999999886632 3357899999999999999999999999998888887767788999999999999999999
Q ss_pred HHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhhh
Q 027434 159 MWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWE 218 (223)
Q Consensus 159 ~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~ 218 (223)
.+-+|.+||+++++.+.-|....++++..+++|..+..-|-|-.+++.|...|++.|+++
T Consensus 273 g~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~e 332 (347)
T KOG1442|consen 273 GWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHE 332 (347)
T ss_pred eEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999999877643
No 15
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.88 E-value=1e-21 Score=165.23 Aligned_cols=203 Identities=12% Similarity=0.109 Sum_probs=159.1
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc---------ccchhhHHHHHHH
Q 027434 2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL---------SFHAVGYAWQIIN 72 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~---------~~~~~G~~~~l~a 72 (223)
+.|++|++++.++++.+++.+++++++++++|||+++.++.|++++++|+.+....|. +....|+++++.+
T Consensus 97 v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~ 176 (334)
T PF06027_consen 97 VLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLG 176 (334)
T ss_pred HHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999998765542 2347999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHH
Q 027434 73 CFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGL 152 (223)
Q Consensus 73 ~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (223)
+++||.+++..|+..|+ .+..+.+..-.+++.++..+...+. |..+..+.+ |.. ..+. ......++.
T Consensus 177 a~lya~~nV~~E~~v~~---------~~~~~~lg~~Glfg~ii~~iq~~il-e~~~i~~~~-w~~-~~~~-~~v~~~~~l 243 (334)
T PF06027_consen 177 AILYAVSNVLEEKLVKK---------APRVEFLGMLGLFGFIISGIQLAIL-ERSGIESIH-WTS-QVIG-LLVGYALCL 243 (334)
T ss_pred HHHHHHHHHHHHHhccc---------CCHHHHHHHHHHHHHHHHHHHHHhe-ehhhhhccC-CCh-hhHH-HHHHHHHHH
Confidence 99999999999999873 3566666666666777766665554 333333322 322 2222 222222233
Q ss_pred HHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhh
Q 027434 153 AISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW 217 (223)
Q Consensus 153 ~~~~~~~-~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~ 217 (223)
...|+.. ..++..||+..++......+.++++++++||+++++..++|.++++.|.++|+..+++
T Consensus 244 f~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~ 309 (334)
T PF06027_consen 244 FLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESP 309 (334)
T ss_pred HHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCc
Confidence 3445443 4679999999999888899999999999999999999999999999999999765543
No 16
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.85 E-value=1.4e-20 Score=156.67 Aligned_cols=197 Identities=13% Similarity=0.156 Sum_probs=144.7
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccc-cccchhhHHHHHHHHHHHHHHH
Q 027434 2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD-LSFHAVGYAWQIINCFLTASYS 80 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d-~~~~~~G~~~~l~a~~~~a~~~ 80 (223)
++++++.|++....+.++.|+++.+++.+++|||++++++.|+.+++.|+.+....| .+.+..|..++++++++++.|.
T Consensus 81 ~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~ 160 (281)
T TIGR03340 81 AQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYS 160 (281)
T ss_pred HHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhh
Confidence 568899999999999999999999999999999999999999999999999876443 2344578889999999999999
Q ss_pred HHHHHHhhhhhhhhccCCCCchhHHHHHhhhH-HHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHHHHHHH
Q 027434 81 LTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLS-LPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSM 159 (223)
Q Consensus 81 v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (223)
+..|+..++.+ ...+......+..... .|.... ....++. .. . ..+.. +...++.+.+...++|..+
T Consensus 161 i~~k~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~-~---~~~~~-~~~~~~~~~~~s~l~~~l~ 228 (281)
T TIGR03340 161 LSDKAAALGVP-----AFYSALGYLGIGFLAMGWPFLLL-YLKRHGR-SM-F---PYARQ-ILPSATLGGLMIGGAYALV 228 (281)
T ss_pred hhccccccchh-----cccccHHHHHHHHHHHHHHHHHH-HHHHhcc-ch-h---hhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 98877533210 0111111222222222 222221 1111221 10 0 11112 3345566666667777775
Q ss_pred -HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHH
Q 027434 160 -WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVF 210 (223)
Q Consensus 160 -~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~ 210 (223)
+++|+.++..++...+++|+++.++|++++||+++..+++|+++++.|+.+
T Consensus 229 ~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 229 LWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 689999999999999999999999999999999999999999999999864
No 17
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.84 E-value=2.4e-20 Score=151.07 Aligned_cols=208 Identities=15% Similarity=0.190 Sum_probs=175.7
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchhhHHHHHHHHHHHHHHHH
Q 027434 2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSL 81 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~~~~~~G~~~~l~a~~~~a~~~v 81 (223)
|+|++|++++.||+.|+.+++|+.+++.++--||+++.-...+.++.+|+++.++.+.|+|..|++++..|+++.++.-.
T Consensus 102 N~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~aS~~sGlRW~ 181 (349)
T KOG1443|consen 102 NWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLAASLLSGLRWA 181 (349)
T ss_pred cceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHHHHHhhhhhHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhcccccc-c----cCCCCcc-chHHHHHHHHHHHHHHHH
Q 027434 82 TLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYL-S----RTPLLRL-PSFWLVMTLSGFLGLAIS 155 (223)
Q Consensus 82 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~-~~~~~~~~~~~~~~~~~~ 155 (223)
+.+++++|.+ ..+-+|.+++++-.......+++..+.+|.+... . ++.+..+ ......+.+.|..++...
T Consensus 182 ~tQ~ll~~~~----~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l~ 257 (349)
T KOG1443|consen 182 FTQMLLRNQP----SAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLLE 257 (349)
T ss_pred HHHHHHhcCc----cccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 9999988642 2345677777766665556666677777665433 1 1111111 112346667888888889
Q ss_pred HHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHh
Q 027434 156 FTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 213 (223)
Q Consensus 156 ~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 213 (223)
++.|..+.+++..+.|+.+..|.+.+.++|..+.+|+++..+|.|..++..|+..+.+
T Consensus 258 ~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 258 FSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 9999889999999999999999999999999999999999999999999999998844
No 18
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.83 E-value=2.1e-18 Score=142.85 Aligned_cols=195 Identities=18% Similarity=0.264 Sum_probs=152.7
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHH-HHhCcccChhHHHHHHHHHHhhhhhcccccccc---hhhHHHHHHHHHHHH
Q 027434 2 SLSLKYINVAMVTVLKNVTNVITAVGEM-YLFNKRHDNRVWAALFLMIISAISGGITDLSFH---AVGYAWQIINCFLTA 77 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~-~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~~~~---~~G~~~~l~a~~~~a 77 (223)
+.++++++++.++.+.++.|+++.+++. +++|||++++++.++.+.+.|+.+....+...+ ..|..+++.+++++|
T Consensus 88 ~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~a 167 (292)
T COG0697 88 FLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWA 167 (292)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999997 777999999999999999999999987654332 589999999999999
Q ss_pred HHHHHHHHHhhhhhhhhccCCCCchhHHH-HHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHHHH
Q 027434 78 SYSLTLRRVMDTAKQVTKSGNLNEFSMVL-LNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISF 156 (223)
Q Consensus 78 ~~~v~~k~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (223)
.+.+..|+.. + .++..... +... ............+.. . ..+...|..+.+.|+++..+++
T Consensus 168 ~~~~~~~~~~-~---------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~g~~~~~i~~ 229 (292)
T COG0697 168 LYTALVKRLS-R---------LGPVTLALLLQLL--LALLLLLLFFLSGFG----A--PILSRAWLLLLYLGVFSTGLAY 229 (292)
T ss_pred HHHHHHHHhc-C---------CChHHHHHHHHHH--HHHHHHHHHHhcccc----c--cCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999875 2 23434433 2222 111121111111111 1 1122336677888888887777
Q ss_pred HHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhh
Q 027434 157 TSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA 214 (223)
Q Consensus 157 ~~~-~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~ 214 (223)
..+ +.+++.++...+.....+|+.+.+++++++||+++..+++|+++++.|+.+...+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 230 LLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 775 6899999999999999999999999999999999999999999999999888776
No 19
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.80 E-value=1.1e-18 Score=132.14 Aligned_cols=147 Identities=18% Similarity=0.396 Sum_probs=127.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCC-----CCc-cc
Q 027434 65 GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTP-----LLR-LP 138 (223)
Q Consensus 65 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~ 138 (223)
|+++++.|.++.|++.++.|+.+++.+ .++.+.++.++++|++..+.+.+.+.....|+++...... ... ++
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~--~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 78 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVS--SNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDP 78 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccc--ccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchH
Confidence 788999999999999999999988631 1235789999999999999999999998888766322111 111 34
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHh
Q 027434 139 SFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 213 (223)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 213 (223)
..+..++..|++++..+++.+++++++||+++++.+++|.+..++.|+++|||++|..+++|+++++.|+.+|+|
T Consensus 79 ~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 79 NFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 567788999999999999999999999999999999999999999999999999999999999999999999975
No 20
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.76 E-value=2.5e-17 Score=133.64 Aligned_cols=207 Identities=12% Similarity=0.077 Sum_probs=174.3
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc---------ccchhhHHHHHHHH
Q 027434 3 LSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL---------SFHAVGYAWQIINC 73 (223)
Q Consensus 3 ~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~---------~~~~~G~~~~l~a~ 73 (223)
+||+|++-|+.++.|++.-+.+++.+.+++|+|.+..+.+...++..|+-+....+. .+...|+.+...+.
T Consensus 102 eaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L 181 (327)
T KOG1581|consen 102 EALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYL 181 (327)
T ss_pred HHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999988654311 24479999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHH
Q 027434 74 FLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLA 153 (223)
Q Consensus 74 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (223)
...+.-+..++++.++ .++++++++++.|+.++.......+..|++.+..++-.. +++++.-+++-+.++.+
T Consensus 182 ~fDgfTn~tQd~lf~~-------~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~-hp~~~~Di~l~s~~gav 253 (327)
T KOG1581|consen 182 LFDGFTNATQDSLFKK-------YKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKE-HPDVAFDILLYSTCGAV 253 (327)
T ss_pred HHHhhHHhHHHHHhcc-------CCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHc-ChhHHHHHHHHHHhhhh
Confidence 9999999999999885 478999999999999999998887666776654433222 24445556666777766
Q ss_pred HHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhh
Q 027434 154 ISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW 217 (223)
Q Consensus 154 ~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~ 217 (223)
-+...|+.+++-+|.+.+++...++++++.++.++||.+++..||.|..+++.|.++-...+.|
T Consensus 254 GQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 254 GQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred hhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 6777778899999999999999999999999999999999999999999988887765554443
No 21
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.75 E-value=7.5e-17 Score=132.38 Aligned_cols=167 Identities=11% Similarity=0.175 Sum_probs=120.2
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchhhHHHHHHHHHHHHHHHH
Q 027434 2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSL 81 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~~~~~~G~~~~l~a~~~~a~~~v 81 (223)
+.|+|++|++.++++.++.|+++++++++++|||++++++.+++++++|+.+...++.+.+ .+++.++++||.|.+
T Consensus 88 ~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~~l~aa~~~a~~~i 163 (256)
T TIGR00688 88 IWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WEALVLAFSFTAYGL 163 (256)
T ss_pred HHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999988754322211 367889999999999
Q ss_pred HHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHHHHHHH-H
Q 027434 82 TLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSM-W 160 (223)
Q Consensus 82 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 160 (223)
..||..++ +..+.. ..+....|........ +++...... .+...|..+++.|++ ..++|..+ +
T Consensus 164 ~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~l~~~g~~-t~i~~~l~~~ 227 (256)
T TIGR00688 164 IRKALKNT----------DLAGFC-LETLSLMPVAIYYLLQ-TDFATVQQT---NPFPIWLLLVLAGLI-TGTPLLAFVI 227 (256)
T ss_pred HHhhcCCC----------CcchHH-HHHHHHHHHHHHHHHH-hccCccccc---CchhHHHHHHHHHHH-HHHHHHHHHH
Confidence 98886331 122222 2122333333332222 222111111 111136667777777 55677776 7
Q ss_pred HHhhcchhHHHHHhhhhhHHHHHHHHHh
Q 027434 161 FLHQTGATTYSLVGSLNKIPLSVAGILL 188 (223)
Q Consensus 161 ~~~~~s~~~~si~~~l~~v~~~~~~~~~ 188 (223)
++|+.++..++...+++|+++.++|.+.
T Consensus 228 a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 228 AANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999764
No 22
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.75 E-value=2.7e-18 Score=134.65 Aligned_cols=203 Identities=14% Similarity=0.068 Sum_probs=170.3
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccc--------cccchhhHHHHHHHH
Q 027434 2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD--------LSFHAVGYAWQIINC 73 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d--------~~~~~~G~~~~l~a~ 73 (223)
|.|+||+|.|+..+-+++.|+-+++++..+.|++.+|++...+++++.|+.+..+.+ -.+ -.|-++.++|.
T Consensus 103 N~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~-g~GElLL~lSL 181 (337)
T KOG1580|consen 103 NQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTF-GFGELLLILSL 181 (337)
T ss_pred cchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCccccc-chHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999876542 223 38999999998
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHH
Q 027434 74 FLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLA 153 (223)
Q Consensus 74 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (223)
-..++-...++++... ..-+...+++|.|+.+...+....+++||..+...+..- .|..|.-+.+.++.+.+
T Consensus 182 ~mDGlTg~~Qdrira~-------yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~R-hP~~~~~l~l~ai~s~L 253 (337)
T KOG1580|consen 182 AMDGLTGSIQDRIRAS-------YQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQR-HPYVFWDLTLLAIASCL 253 (337)
T ss_pred HhcccchhHHHHHHHh-------hccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHh-ccHHHHHHHHHHHHHHh
Confidence 8888888888887553 244678899999999999999888888886654433221 23335567777888887
Q ss_pred HHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHh
Q 027434 154 ISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 213 (223)
Q Consensus 154 ~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 213 (223)
-+.+.|..+...+|++-|++...++.++++.++++|+++++..||+|.++++.+...=..
T Consensus 254 GQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~ 313 (337)
T KOG1580|consen 254 GQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVV 313 (337)
T ss_pred hhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhh
Confidence 788888889999999999999999999999999999999999999999999988765433
No 23
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.75 E-value=1.4e-17 Score=138.48 Aligned_cols=205 Identities=17% Similarity=0.122 Sum_probs=156.1
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc--------ccchhhHHHHHHHH
Q 027434 2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL--------SFHAVGYAWQIINC 73 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~--------~~~~~G~~~~l~a~ 73 (223)
|.||.+++++..+++.+++-+|++.++.++..||+++.|.+++.+.+.|+++++.+|. +.+..|.++++.+|
T Consensus 177 naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~llG~llaL~sA 256 (416)
T KOG2765|consen 177 NAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLLGNLLALLSA 256 (416)
T ss_pred HHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999987643 23378999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhh----HHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHH
Q 027434 74 FLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSL----SLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGF 149 (223)
Q Consensus 74 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (223)
+.||.|.+..||...+++ .+++......|.-++ ..|.+.++-...+| +++.+....+ ..+++.+.
T Consensus 257 ~~YavY~vllk~~~~~eg-----~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e-----~F~lP~~~q~-~~vv~~~l 325 (416)
T KOG2765|consen 257 LLYAVYTVLLKRKIGDEG-----ERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEE-----RFELPSSTQF-SLVVFNNL 325 (416)
T ss_pred HHHHHHHHHHHhhccccc-----ccccHHHHHHHHHHHHHHHHhHHHHHHHHhccC-----cccCCCCcee-EeeeHhhH
Confidence 999999999999877532 255554444443333 34444444333222 2222222232 23444555
Q ss_pred HHHHH-HHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhh
Q 027434 150 LGLAI-SFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW 217 (223)
Q Consensus 150 ~~~~~-~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~ 217 (223)
.+..+ .|.=-++.-.++|+.+....++....+++..+++=|.++|+.+++|...+++|.+..++..+-
T Consensus 326 igtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~ 394 (416)
T KOG2765|consen 326 IGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN 394 (416)
T ss_pred HHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence 55544 443224566799999999999999999999999999999999999999999999988775553
No 24
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.73 E-value=4e-16 Score=130.38 Aligned_cols=190 Identities=15% Similarity=0.175 Sum_probs=145.5
Q ss_pred cccccccchhHHHHHHH-HHHHHHHHHHHHHhCcccChhH----HHHHHHHHHhhhhhcccccc-------cc-hhhHHH
Q 027434 2 SLSLKYINVAMVTVLKN-VTNVITAVGEMYLFNKRHDNRV----WAALFLMIISAISGGITDLS-------FH-AVGYAW 68 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~~-~~pi~~~i~~~~~~~e~~s~~~----~~~l~l~~~Gv~~~~~~d~~-------~~-~~G~~~ 68 (223)
+.|.++++++.+..+.+ +.|+++.+.+.+++|||.++++ ..+++++++|+++....+.+ .+ ..|.++
T Consensus 77 ~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~ 156 (290)
T TIGR00776 77 FKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILL 156 (290)
T ss_pred HHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHH
Confidence 45788999999999988 8888999999999999999999 99999999999987643211 33 689999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhh----hHHHHHHHHHHHhccccccccCCCCccchHHHHH
Q 027434 69 QIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNS----LSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVM 144 (223)
Q Consensus 69 ~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (223)
+++|+++|+.|.+..|+. +.++++..+.+.. .+.....+. . +..+ +.+...|..+
T Consensus 157 ~l~sg~~y~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~~------~~~~~~~~~~ 215 (290)
T TIGR00776 157 LLMSTIGYLVYVVVAKAF-----------GVDGLSVLLPQAIGMVIGGIIFNLGH---I-LAKP------LKKYAILLNI 215 (290)
T ss_pred HHHHHHHHHHHHHHHHHc-----------CCCcceehhHHHHHHHHHHHHHHHHH---h-cccc------hHHHHHHHHH
Confidence 999999999999999975 2356655333322 222222221 0 0011 1122224333
Q ss_pred HHHHHHHHHHHHHHH-HHHh-hcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchh----hHHHHHHHHHHHHHhh
Q 027434 145 TLSGFLGLAISFTSM-WFLH-QTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENS----ASIFFGLLAGVFFARA 214 (223)
Q Consensus 145 ~~~~~~~~~~~~~~~-~~~~-~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~----~G~~li~~g~~~~~~~ 214 (223)
+ .|++ ..+++..| ...+ +.++.++++..+.||+.+++++++++||+.+..|+ +|.++++.|+.+....
T Consensus 216 ~-~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 216 L-PGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred H-HHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence 4 7888 57787776 5678 89999999999999999999999999999999999 9999999998876543
No 25
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.71 E-value=1.5e-16 Score=127.27 Aligned_cols=204 Identities=18% Similarity=0.192 Sum_probs=170.4
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc----ccchhhHHHHHHHHHHHH
Q 027434 2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL----SFHAVGYAWQIINCFLTA 77 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~----~~~~~G~~~~l~a~~~~a 77 (223)
|-|+.|+|.|+..+.|+|..+-+++.+.++.+.|..+.+..+..++.+|.+..+..|. .||..|..+.-.|.++.|
T Consensus 124 n~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA 203 (367)
T KOG1582|consen 124 NGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADA 203 (367)
T ss_pred cCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999999987775 577899999999999999
Q ss_pred HHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCC--C-CccchHHHHHHHHHHHHHHH
Q 027434 78 SYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTP--L-LRLPSFWLVMTLSGFLGLAI 154 (223)
Q Consensus 78 ~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~ 154 (223)
.--.++++.++.+ +.+..|+++|....+.|.+++....+||..+.+.+- + +..........+.|.+|...
T Consensus 204 ~iGNvQEk~m~~~-------~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~ 276 (367)
T KOG1582|consen 204 VIGNVQEKAMKMN-------PASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVF 276 (367)
T ss_pred HhhHHHHHHHhhC-------CCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHH
Confidence 9988888887743 456789999999999999999999999987765431 1 21222223334445555322
Q ss_pred HHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhh
Q 027434 155 SFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 215 (223)
Q Consensus 155 ~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~ 215 (223)
- ...+|..++..++.+...++.+++++++++|.+++|.+...|..+++.|+++--+.+
T Consensus 277 V---LalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 277 V---LALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred H---HHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 2 235789999999999999999999999999999999999999999999999876655
No 26
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.70 E-value=1.2e-15 Score=124.11 Aligned_cols=189 Identities=18% Similarity=0.301 Sum_probs=147.7
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc-----------------ccchh
Q 027434 2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL-----------------SFHAV 64 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~-----------------~~~~~ 64 (223)
+.++++++.+++++++++..+++++++.+++|+|.+++||.++.+.++|+.+....+. +....
T Consensus 35 ~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (244)
T PF04142_consen 35 FVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNSSSSSVHHDASNQNPLL 114 (244)
T ss_pred HHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccccccccccccccccccchhHh
Confidence 5688999999999999999999999999999999999999999999999998643211 11258
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhcccccccc---CCCCccchHH
Q 027434 65 GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSR---TPLLRLPSFW 141 (223)
Q Consensus 65 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 141 (223)
|.++.+.++++.+...++.+|.+|+. +.+.+.....-+..+.+..++.... .+.+.+.+ +..+ ++..|
T Consensus 115 G~~~vl~~~~~S~~agVy~E~~lK~~-------~~s~~~~N~qL~~~gi~~~~~~~~~-~~~~~~~~~g~f~G~-~~~~~ 185 (244)
T PF04142_consen 115 GLLAVLAAAFLSGFAGVYFEKLLKRS-------NVSLWIQNMQLYLFGILFNLLALLL-SDGSAISESGFFHGY-SWWVW 185 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-------chhHHHHHHHHHHHHHHHHHHHHhc-ccccccccCCchhhc-chHHH
Confidence 99999999999999999999999963 2344444444445566666655433 33332222 2233 34457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHH
Q 027434 142 LVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFF 203 (223)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~l 203 (223)
..+...++.|..+++ .+|+.+...-+....+..+.+.++++.+||.++|....+|..+
T Consensus 186 ~~i~~~a~gGllva~----v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 186 IVIFLQAIGGLLVAF----VLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHHHHHHhhHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 777777777766654 5799999999999999999999999999999999999999765
No 27
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.69 E-value=3.8e-15 Score=123.85 Aligned_cols=203 Identities=15% Similarity=0.240 Sum_probs=162.4
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc-----------ccccchhhHHHHHH
Q 027434 3 LSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT-----------DLSFHAVGYAWQII 71 (223)
Q Consensus 3 ~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~-----------d~~~~~~G~~~~l~ 71 (223)
.++.+.+.+++++..++..+.|+++..+++|||.+++||.++++.++|+.+.... +.+..+.|...++.
T Consensus 111 val~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~n~~~G~~avl~ 190 (345)
T KOG2234|consen 111 VALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQNPFLGLVAVLV 190 (345)
T ss_pred HHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCcccchhhhHHHHHH
Confidence 4678899999999999999999999999999999999999999999999998621 12344799999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhcccccccc---CCCCccchHHHHHHHHH
Q 027434 72 NCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSR---TPLLRLPSFWLVMTLSG 148 (223)
Q Consensus 72 a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 148 (223)
++++.+...++.+|.+|+. +.+.|-...--+.++.++.++.++.. |.+.+.. +..+ +...|..++..+
T Consensus 191 ~c~~SgfAgvYfEkiLK~s-------~~s~wi~NiqL~~~g~~f~~l~~~~~-d~~~i~~~gff~G~-s~~vw~vVl~~a 261 (345)
T KOG2234|consen 191 ACFLSGFAGVYFEKILKGS-------NVSLWIRNIQLYFFGILFNLLTILLQ-DGEAINEYGFFYGY-SSIVWLVVLLNA 261 (345)
T ss_pred HHHHHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHHHHHHHHhhc-cccccccCCccccc-cHHHHHHHHHHh
Confidence 9999999999999999852 34444443333355666666665554 4333321 1223 445688888888
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhhh
Q 027434 149 FLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWE 218 (223)
Q Consensus 149 ~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~ 218 (223)
+.|..++. .+|+.+...-.....+..+.+.+.++.+||-++|....+|+.+++.++++|...|+++
T Consensus 262 ~gGLlvs~----v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 262 VGGLLVSL----VMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred ccchhHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 88877764 4688888888888888899999999999999999999999999999999999777764
No 28
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.68 E-value=2e-14 Score=116.61 Aligned_cols=200 Identities=14% Similarity=0.225 Sum_probs=158.2
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchhhHHHHHHHHHHHHHHHHHH
Q 027434 4 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTL 83 (223)
Q Consensus 4 al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~~~~~~G~~~~l~a~~~~a~~~v~~ 83 (223)
|.+.-.+-.+++-.+.-|++..+++.+++|||+|+.|++++.++.+||..-.+...+++|....+ +++|+.|...-
T Consensus 92 Avn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~l----a~sf~~Ygl~R 167 (293)
T COG2962 92 AVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALAL----ALSFGLYGLLR 167 (293)
T ss_pred ecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH----HHHHHHHHHHH
Confidence 44445556778888999999999999999999999999999999999999988887888766544 46889988865
Q ss_pred HHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHHHHHHH-HHH
Q 027434 84 RRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSM-WFL 162 (223)
Q Consensus 84 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 162 (223)
|+. +++..+-...-.+.-.|..+.+.+..++..+....+ +...|..+..+|..+. +....| .+-
T Consensus 168 K~~-----------~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~---~~~~~~LLv~aG~vTa-vpL~lf~~aa 232 (293)
T COG2962 168 KKL-----------KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQN---ANSLWLLLVLAGLVTA-VPLLLFAAAA 232 (293)
T ss_pred Hhc-----------CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcC---CchHHHHHHHhhHHHH-HHHHHHHHHH
Confidence 554 467777777777778888888877766644311111 1233666777777753 445555 567
Q ss_pred hhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhhhhhcC
Q 027434 163 HQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQS 222 (223)
Q Consensus 163 ~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~~ 222 (223)
|+.+=.+.++..+.+|...-+++++++||+++..+...-+++..|..+|+.+.-++++++
T Consensus 233 ~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~~ 292 (293)
T COG2962 233 KRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTARKK 292 (293)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 899999999999999999999999999999999999999999999999988777655443
No 29
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.66 E-value=2e-16 Score=126.67 Aligned_cols=202 Identities=18% Similarity=0.296 Sum_probs=155.0
Q ss_pred cccccc-cchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc---ccc--------------cc-
Q 027434 2 SLSLKY-INVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT---DLS--------------FH- 62 (223)
Q Consensus 2 ~~al~~-~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~---d~~--------------~~- 62 (223)
|+++++ +|+|...+.|+.+++.+++.++++.|+|.|.+|+.+++++.+|+++.+.. |.. +.
T Consensus 82 N~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~ 161 (330)
T KOG1583|consen 82 NYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFW 161 (330)
T ss_pred cceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchH
Confidence 567776 89999999999999999999999999999999999999999999997532 211 11
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHH-HhccccccccC-----CC-
Q 027434 63 -AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVI-VFNEVDYLSRT-----PL- 134 (223)
Q Consensus 63 -~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~- 134 (223)
..|..+..+|.+..|.-.+++++..++++ =++.|.++|++..++|.++...= +..++...... |.
T Consensus 162 w~iGi~lL~~al~~sa~mgiyqE~~Y~kyG-------Kh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~ 234 (330)
T KOG1583|consen 162 WLIGIALLVFALLLSAYMGIYQETTYQKYG-------KHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLL 234 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceecccc
Confidence 26888888899999999999999988753 37889999999999999876421 11111111111 11
Q ss_pred -CccchHHHHHHHHHHHHHHHHHHHH---H-HHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHH
Q 027434 135 -LRLPSFWLVMTLSGFLGLAISFTSM---W-FLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGV 209 (223)
Q Consensus 135 -~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~ 209 (223)
..-|..|.+++..++. +|.|- + .-..+++++++++.++++.++.+++++.|++++|++.|+|..+++.|.+
T Consensus 235 g~~vP~~~~yLl~n~L~----Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~ 310 (330)
T KOG1583|consen 235 GFKVPSMWVYLLFNVLT----QYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTL 310 (330)
T ss_pred CccccHHHHHHHHHHHH----HHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHH
Confidence 1123446555544433 44432 1 2246999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q 027434 210 FFARA 214 (223)
Q Consensus 210 ~~~~~ 214 (223)
+|+..
T Consensus 311 ~fa~~ 315 (330)
T KOG1583|consen 311 LFANV 315 (330)
T ss_pred HHHHH
Confidence 98753
No 30
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.66 E-value=4.9e-17 Score=129.72 Aligned_cols=201 Identities=13% Similarity=0.084 Sum_probs=155.6
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc-----c------c---ccchhhH
Q 027434 1 MSLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT-----D------L---SFHAVGY 66 (223)
Q Consensus 1 ~~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~-----d------~---~~~~~G~ 66 (223)
|++|++|+|.+-++++.+.+|.|+.++++.++|||.|+.+.++.++.+.|++++... | . +-+..|-
T Consensus 114 myya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt 193 (346)
T KOG4510|consen 114 MYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGT 193 (346)
T ss_pred HHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCch
Confidence 678999999999999999999999999999999999999999999999999987432 1 1 1235787
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHH
Q 027434 67 AWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTL 146 (223)
Q Consensus 67 ~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (223)
+.++.+++.-|--.++.|++-| +.+....+-|..+.+++...+.+...++++-... +.+ |..++.
T Consensus 194 ~aai~s~lf~asvyIilR~iGk---------~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~c---gkd---r~l~~~ 258 (346)
T KOG4510|consen 194 VAAISSVLFGASVYIILRYIGK---------NAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHC---GKD---RWLFVN 258 (346)
T ss_pred HHHHHhHhhhhhHHHHHHHhhc---------cccEEEEehHHHHHHHHHHHHHHhhccceecCcc---ccc---eEEEEE
Confidence 7788888887877888888855 3455555556666677777776666665543221 112 334566
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhh
Q 027434 147 SGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKM 216 (223)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 216 (223)
.|++|+.-+...-..+++-.+...++..+..-+.+.++-+++||+.+|++.|.|+++++.+..+....|-
T Consensus 259 lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kw 328 (346)
T KOG4510|consen 259 LGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKW 328 (346)
T ss_pred ehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHH
Confidence 6888877776666666666666678889999999999999999999999999999998888877655443
No 31
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.62 E-value=3.2e-14 Score=112.92 Aligned_cols=196 Identities=16% Similarity=0.072 Sum_probs=149.6
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccc---cccchhhHHHHHHHHHHHHHH
Q 027434 3 LSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD---LSFHAVGYAWQIINCFLTASY 79 (223)
Q Consensus 3 ~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d---~~~~~~G~~~~l~a~~~~a~~ 79 (223)
.|++.+|.+.+..+.++-|+.+..++. +| .++..-+.+++.|..+..... .+.|..|..+++.+..||+.|
T Consensus 90 ~si~riPlGiAVAiEF~GPL~vA~~~s----Rr--~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~Y 163 (292)
T COG5006 90 LSIERIPLGIAVAIEFTGPLAVALLSS----RR--LRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALY 163 (292)
T ss_pred HHHHhccchhhhhhhhccHHHHHHHhc----cc--hhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHH
Confidence 478899999999999999999877653 33 345566677888888765432 467889999999999999999
Q ss_pred HHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHHHHHH-
Q 027434 80 SLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTS- 158 (223)
Q Consensus 80 ~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 158 (223)
.+..||.-+ ..+..+.+.+....+....+++.....+ +...++.....-+..+++++.+=|+.
T Consensus 164 Iv~G~r~g~---------~~~g~~g~a~gm~vAaviv~Pig~~~ag-------~~l~~p~ll~laLgvavlSSalPYsLE 227 (292)
T COG5006 164 IVLGQRAGR---------AEHGTAGVAVGMLVAALIVLPIGAAQAG-------PALFSPSLLPLALGVAVLSSALPYSLE 227 (292)
T ss_pred HHHcchhcc---------cCCCchHHHHHHHHHHHHHhhhhhhhcc-------hhhcChHHHHHHHHHHHHhcccchHHH
Confidence 999998743 2344444555555566666655432211 11234445566778899999998988
Q ss_pred HHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhhhhh
Q 027434 159 MWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERS 220 (223)
Q Consensus 159 ~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~ 220 (223)
..++|+.++-+.++..++||..+.+.|++++||.+|..||.|++.++.++.-.+...+|+.+
T Consensus 228 miAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~~~ 289 (292)
T COG5006 228 MIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKPAV 289 (292)
T ss_pred HHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCCCC
Confidence 46799999999999999999999999999999999999999999999887755554444443
No 32
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.61 E-value=1.8e-14 Score=115.90 Aligned_cols=206 Identities=17% Similarity=0.170 Sum_probs=158.5
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccc----------cccchhhHHHHH
Q 027434 1 MSLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD----------LSFHAVGYAWQI 70 (223)
Q Consensus 1 ~~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d----------~~~~~~G~~~~l 70 (223)
|+.++++++++.+|++|....+|+.+++..+++++++.++|+++.....|++++...| .+....|+++.+
T Consensus 103 m~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~iitGdllIi 182 (372)
T KOG3912|consen 103 MYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSIITGDLLII 182 (372)
T ss_pred HHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccchhhhHHHH
Confidence 7889999999999999999999999999999999999999999999999999875443 233468999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHh-----ccccccccCCCCccchH-----
Q 027434 71 INCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVF-----NEVDYLSRTPLLRLPSF----- 140 (223)
Q Consensus 71 ~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~----- 140 (223)
++-+.-|+++++.+|.+++ .+++|.+.+.|.-+++...+..+.... ++..+......+.|+..
T Consensus 183 iaqiivaiQ~v~Eek~l~~-------~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~ 255 (372)
T KOG3912|consen 183 IAQIIVAIQMVCEEKQLKK-------SNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAAL 255 (372)
T ss_pred HHHHHHHHHHHHHHhhhhh-------ccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHh
Confidence 9999999999999999885 367888888887777765554443321 21111111110111100
Q ss_pred ----HHHHHHHHHHH--HHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHh
Q 027434 141 ----WLVMTLSGFLG--LAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 213 (223)
Q Consensus 141 ----~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 213 (223)
-.++.+.|+.. ...++......|..|+++-.+...++..+-.++++....|.+...|+.|-++-+.|.++|+.
T Consensus 256 ~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~ 334 (372)
T KOG3912|consen 256 QESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQ 334 (372)
T ss_pred cCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12333334333 22355555566889999999999999999999999999999999999999999999999975
No 33
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.49 E-value=4.3e-13 Score=107.87 Aligned_cols=188 Identities=18% Similarity=0.193 Sum_probs=128.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc---------------------------c
Q 027434 8 INVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL---------------------------S 60 (223)
Q Consensus 8 ~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~---------------------------~ 60 (223)
+++|..+..++..++++++.+..+.+||.+..|+++..+...|+......|. +
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 6889999999999999999999999999999999999999999986433221 1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhc----cccccccCC--C
Q 027434 61 FHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFN----EVDYLSRTP--L 134 (223)
Q Consensus 61 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~ 134 (223)
..+.|....+.++.+.+.-.++.++..|+ . +..+|.+....+...+.....+ +.+...+.+ .
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~-------~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKD-------G-----DTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFI 149 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccC-------C-----CCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCccc
Confidence 22455555666666666667777776442 1 1124444444444433321111 111111111 1
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHH
Q 027434 135 LRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFF 211 (223)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~ 211 (223)
..+...|..++..++. +.+..+++|+.++++.++...++++.+.++++++|||+++..++.|+.+++.|+++|
T Consensus 150 ~~~~~~~~~~~~~a~~----~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 150 GYPTAVWIVGLLNVGG----GLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred CCchHHHHHHHHHHhc----CceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 1122234333333333 333446899999999999999999999999999999999999999999999988765
No 34
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.29 E-value=3.2e-11 Score=86.33 Aligned_cols=134 Identities=12% Similarity=0.166 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHH
Q 027434 66 YAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMT 145 (223)
Q Consensus 66 ~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (223)
.+|++++++.+++-.++.|--++ +.|+.......+......+.......|.++...+. ++..|..+.
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~---------~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~----~~k~~lfli 71 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLE---------GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEI----GPKSWLFLI 71 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc---------ccCccHHHHHHHHHHHHHHHHHHHhcCceeccccc----Ccceehhhh
Confidence 57899999999999999887765 45676666677777777777777777877654332 233477889
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHH
Q 027434 146 LSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA 212 (223)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~ 212 (223)
++|+.+..-.++.|+++|.-.+.....+....++.++++++.++||++|..+|+|++++.+|..+.+
T Consensus 72 lSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 72 LSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 9998877777777789998877778888888999999999999999999999999999999987654
No 35
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.29 E-value=3.1e-11 Score=87.57 Aligned_cols=124 Identities=19% Similarity=0.330 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHH
Q 027434 74 FLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLA 153 (223)
Q Consensus 74 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (223)
++||.+.+..|+..+ +.++.....+....+.+ ..+.....+..+ . ... +...+....+.+.++..
T Consensus 1 ~~~a~~~~~~k~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~---~~~-~~~~~~~~~~~~~~~~~ 65 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLK---------KISPLSITFWRFLIAGI-LLILLLILGRKP-F---KNL-SPRQWLWLLFLGLLGTA 65 (126)
T ss_pred ceeeeHHHHHHHHhc---------cCCHHHHHHHHHHHHHH-HHHHHHhhcccc-c---cCC-ChhhhhhhhHhhcccee
Confidence 367889999999876 47889999998888887 555555544332 1 111 11224456666777655
Q ss_pred HHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHH
Q 027434 154 ISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA 212 (223)
Q Consensus 154 ~~~~~~-~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~ 212 (223)
.++..+ +++|+.++...+...+++|+.+.++++++++|+++..+++|+++++.|+.+..
T Consensus 66 ~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 66 LAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 555554 78999999999999999999999999999999999999999999999988754
No 36
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.21 E-value=2.8e-12 Score=102.11 Aligned_cols=196 Identities=10% Similarity=0.068 Sum_probs=146.3
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc--------ccchhhHHHHHHHHH
Q 027434 3 LSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL--------SFHAVGYAWQIINCF 74 (223)
Q Consensus 3 ~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~--------~~~~~G~~~~l~a~~ 74 (223)
+|.||++....+.+-+-..+.+.+++++++|.|.++.++.|+++++.|+++....|. +++..|++++++.|-
T Consensus 97 ~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GAT 176 (336)
T KOG2766|consen 97 KAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGAT 176 (336)
T ss_pred eehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecce
Confidence 588999999999999999999999999999999999999999999999998765542 344689999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHH-HHHHH
Q 027434 75 LTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSG-FLGLA 153 (223)
Q Consensus 75 ~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 153 (223)
+||..++..+.+.| +.+..+.+..-.+++..+..+- ++++..+ ... -+|. |-...+.+ ..+..
T Consensus 177 lYaVSNv~EEflvk---------n~d~~elm~~lgLfGaIIsaIQ-~i~~~~~-~~t-l~w~----~~i~~yl~f~L~MF 240 (336)
T KOG2766|consen 177 LYAVSNVSEEFLVK---------NADRVELMGFLGLFGAIISAIQ-FIFERHH-VST-LHWD----SAIFLYLRFALTMF 240 (336)
T ss_pred eeeeccccHHHHHh---------cCcHHHHHHHHHHHHHHHHHHH-Hhhhccc-eee-Eeeh----HHHHHHHHHHHHHH
Confidence 99999999999877 4678888877777777777666 3332221 110 1121 21222222 11122
Q ss_pred HHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhh
Q 027434 154 ISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKM 216 (223)
Q Consensus 154 ~~~~~~-~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 216 (223)
.-|+.. ..+|..|++..++.......-+++. ..||-+.+|...+.-+.+..|.++|+-+++
T Consensus 241 llYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~ 302 (336)
T KOG2766|consen 241 LLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREK 302 (336)
T ss_pred HHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecccc
Confidence 223332 3458899998887777777777776 678889999999999999999999954433
No 37
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.05 E-value=1.2e-09 Score=84.22 Aligned_cols=201 Identities=15% Similarity=0.113 Sum_probs=144.4
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc--ccchhhHHHHHHHHHHHHHHH
Q 027434 3 LSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL--SFHAVGYAWQIINCFLTASYS 80 (223)
Q Consensus 3 ~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~--~~~~~G~~~~l~a~~~~a~~~ 80 (223)
.+++.++.+.++.+.++--.|+.+++++.+|+|+...++++.++++.|+++..+.|. ...+.|...+++|+...|+|.
T Consensus 72 ~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~iGi~~AV~SA~~aAlYK 151 (290)
T KOG4314|consen 72 LALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEIIGIACAVGSAFMAALYK 151 (290)
T ss_pred HHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999886654 345899999999999999999
Q ss_pred HHHHHHhhhhhhhhccCCCCch----h-HHHHHh-hhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHH
Q 027434 81 LTLRRVMDTAKQVTKSGNLNEF----S-MVLLNN-SLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAI 154 (223)
Q Consensus 81 v~~k~~~~~~~~~~~~~~~~~~----~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (223)
+..|+...+. ++... . +-+++- ..+.|.++....-.|++++. .... |.-+--.+......
T Consensus 152 V~FK~~iGnA-------n~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsF-A~~P------WG~l~G~A~L~lAF 217 (290)
T KOG4314|consen 152 VLFKMFIGNA-------NFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSF-AAAP------WGCLCGAAGLSLAF 217 (290)
T ss_pred HHHHHHhccC-------cchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHH-hhCC------chhhhhHHHHHHHH
Confidence 9999998752 12211 1 112221 22444443332222334322 1111 33222223333444
Q ss_pred HHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhh
Q 027434 155 SFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW 217 (223)
Q Consensus 155 ~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~ 217 (223)
++.....+..+.|...|+-..+..........++-+-.++.....|..++..|.++.-..+.|
T Consensus 218 N~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~ 280 (290)
T KOG4314|consen 218 NFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDK 280 (290)
T ss_pred hhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccch
Confidence 444434567788999999888888888888988888888999999999999998876554443
No 38
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.05 E-value=9.3e-09 Score=84.36 Aligned_cols=139 Identities=17% Similarity=0.155 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhcccccc-ccCCCCccchHHH
Q 027434 64 VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYL-SRTPLLRLPSFWL 142 (223)
Q Consensus 64 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 142 (223)
.|.++.++++++|+...+..|.. . ++++.++.++....+.+.+.+.....++.... .+.........+.
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~---------~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-K---------PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLIL 71 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-c---------cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHH
Confidence 48899999999999999999973 3 47899999999998887776655444432211 0111111112233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHH
Q 027434 143 VMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA 212 (223)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~ 212 (223)
...+.|++......+.+++++++++.++++..+..|+.+.+++.++++|+++..+++|.++.+.|+.+..
T Consensus 72 ~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 72 SLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 4556666644444444578999999999999999999999999999999999999999999999988654
No 39
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.01 E-value=1.8e-08 Score=84.49 Aligned_cols=139 Identities=10% Similarity=0.099 Sum_probs=103.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchH
Q 027434 61 FHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSF 140 (223)
Q Consensus 61 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (223)
....|.++.++++++|+...+..|.. . ++++.++.++....+.+.+.+.....++.....+. ..++..
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~---------~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~--~~~~~~ 72 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y---------YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTL--IQTPQK 72 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-c---------CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH--HcCHHH
Confidence 44589999999999999999999764 3 47899999999998887776655444332221110 001121
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHH
Q 027434 141 WLVMTLSGFLGLAISFTS-MWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA 212 (223)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~ 212 (223)
+.... .+.++...++.. +++++++++..+++..+..|+.+.++++++++|+++..+++|+++.++|+.+..
T Consensus 73 ~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 73 IFMLA-VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 22222 344444444444 578999999999999999999999999999999999999999999999988754
No 40
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.01 E-value=1.2e-08 Score=84.91 Aligned_cols=133 Identities=10% Similarity=0.062 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHH
Q 027434 66 YAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMT 145 (223)
Q Consensus 66 ~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (223)
+++.+++++++|...+..||..++ .++ ...+.+....+.+.+........ ..++.+ +...|....
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~---------~~~--~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~---~~~~~~~~~ 67 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK---------EPD--FLWWALLAHSVLLTPYGLWYLAQ-VGWSRL---PATFWLLLA 67 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc---------hhH--HHHHHHHHHHHHHHHHHHHhccc-CCCCCc---chhhHHHHH
Confidence 567899999999999999987652 122 23454455555555544332111 111111 122244455
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHh
Q 027434 146 LSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 213 (223)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 213 (223)
..+.......++.+.+.++.++...+.+.+..|+.+.+++++++||+++..+++|.++++.|+.+...
T Consensus 68 ~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 68 ISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 55555555555656789999999999999999999999999999999999999999999999987654
No 41
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.80 E-value=2.3e-07 Score=79.77 Aligned_cols=138 Identities=17% Similarity=0.152 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHH
Q 027434 64 VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLV 143 (223)
Q Consensus 64 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (223)
.-+..++..-++|+.+.++.|..++. .+++....+|....+.+.+.++....+..... +.. +...|..
T Consensus 13 ~~~~~~~~~q~~~~~~~~~~k~a~~~--------G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~---~~~-~~~~~~~ 80 (358)
T PLN00411 13 VFLTAMLATETSVVGISTLFKVATSK--------GLNIYPFLGYSYLLASLLLLPSLFFTNRSRSL---PPL-SVSILSK 80 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHC--------CCCccHHHHHHHHHHHHHHHHHHHHHHHhccc---Ccc-hHHHHHH
Confidence 34556777889999999999999873 68888999999888888888776654321111 110 1122556
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHh------cCCcCCcchhhHHHHHHHHHHHHHh
Q 027434 144 MTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILL------FKVPTSLENSASIFFGLLAGVFFAR 213 (223)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~------~~e~~~~~~~~G~~li~~g~~~~~~ 213 (223)
+.+.|++++......+..+++++|..++++.+..|+.+.++++++ ++|+++..+++|.++.++|+.+...
T Consensus 81 l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 81 IGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 677788874333344578999999999999999999999999999 6999999999999999999887543
No 42
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.65 E-value=4e-06 Score=68.71 Aligned_cols=173 Identities=15% Similarity=0.146 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHhCcccChhHHH----HHHHHHHhhhhhcccccc--------cchhhHHHHHHHHHHHHHHHHHHHH
Q 027434 18 NVTNVITAVGEMYLFNKRHDNRVWA----ALFLMIISAISGGITDLS--------FHAVGYAWQIINCFLTASYSLTLRR 85 (223)
Q Consensus 18 ~~~pi~~~i~~~~~~~e~~s~~~~~----~l~l~~~Gv~~~~~~d~~--------~~~~G~~~~l~a~~~~a~~~v~~k~ 85 (223)
..+-+.+.+.++++++|+.+.+++. +++++++|+.+.+..|.+ ....|....+.+.+.|..|....|.
T Consensus 80 g~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~ 159 (269)
T PF06800_consen 80 GLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKA 159 (269)
T ss_pred hHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3455668889999999988877765 889999999998765432 1246999999999999999998776
Q ss_pred HhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027434 86 VMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQT 165 (223)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (223)
. +.++++..+=++.--.....++.... .+...+ ...|.. ++.|++=..-+.+.+...++.
T Consensus 160 ~-----------~~~~~~~~lPqaiGm~i~a~i~~~~~--~~~~~~------k~~~~n-il~G~~w~ignl~~~is~~~~ 219 (269)
T PF06800_consen 160 F-----------HVSGWSAFLPQAIGMLIGAFIFNLFS--KKPFFE------KKSWKN-ILTGLIWGIGNLFYLISAQKN 219 (269)
T ss_pred c-----------CCChhHhHHHHHHHHHHHHHHHhhcc--cccccc------cchHHh-hHHHHHHHHHHHHHHHhHHhc
Confidence 4 46787777654433322233333222 111111 122333 333443333345545677899
Q ss_pred chhHHHHHhhhhhHHHHHHHHHhcCCcCCcch----hhHHHHHHHHHHH
Q 027434 166 GATTYSLVGSLNKIPLSVAGILLFKVPTSLEN----SASIFFGLLAGVF 210 (223)
Q Consensus 166 s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~----~~G~~li~~g~~~ 210 (223)
+..+.=.+..+..+++++.|+++++|+=+-.+ ++|.++++.|..+
T Consensus 220 G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 220 GVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred cchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 99998899999999999999999999988654 4677777777653
No 43
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.65 E-value=1.5e-06 Score=63.91 Aligned_cols=122 Identities=21% Similarity=0.232 Sum_probs=85.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHH
Q 027434 64 VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLV 143 (223)
Q Consensus 64 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (223)
.|+++.+.+.++.+.-++..|+-.++.+ +.+.... . . ..... . .++ ..
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g------~~~~~~~-~------~--~~~~~-~-------------~~p---~~ 49 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLP------LLSHAWD-F------I--AALLA-F-------------GLA---LR 49 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCC------CccchhH-H------H--HHHHH-H-------------hcc---HH
Confidence 4889999999999999999998766421 1111000 0 0 00000 0 011 12
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHH--hcCCcCCcchhhHHHHHHHHHHHHHhhhhh
Q 027434 144 MTLSGFLGLAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGIL--LFKVPTSLENSASIFFGLLAGVFFARAKMW 217 (223)
Q Consensus 144 ~~~~~~~~~~~~~~~~-~~~~~~s~~~~si~~~l~~v~~~~~~~~--~~~e~~~~~~~~G~~li~~g~~~~~~~~~~ 217 (223)
.++.|+.+...++..+ +++|+.+...+....+..++...+.++. +|||++|+.+++|++++++|+++.++.++|
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~ 126 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 3455777777777776 6789999999988888888777777775 899999999999999999999998765443
No 44
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.62 E-value=6.2e-08 Score=69.64 Aligned_cols=59 Identities=27% Similarity=0.447 Sum_probs=54.2
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccccc
Q 027434 2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSF 61 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d~~~ 61 (223)
+.|+++.| +....+.++.|+++.+++.+++|||++++++.++.++++|+.+..++|.+.
T Consensus 53 ~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~~ 111 (113)
T PF13536_consen 53 FYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLTG 111 (113)
T ss_pred HHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhccc
Confidence 46789999 688899999999999999999999999999999999999999998887643
No 45
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.56 E-value=1.9e-06 Score=70.47 Aligned_cols=141 Identities=16% Similarity=0.192 Sum_probs=113.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHH
Q 027434 62 HAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFW 141 (223)
Q Consensus 62 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (223)
...|.++++.|-+.|+.-..+.|-.. +.++.|+..+.-+.+.|++++......++.+..+ ...+|..+
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll~----------~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~--~~~~p~~~ 72 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLLE----------PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQ--LLKQPKTL 72 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHc----------cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH--HHhCcHHH
Confidence 35799999999999999999988873 4688899999889999999988887777766544 22334445
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhh
Q 027434 142 LVMTLSGFLGLAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 215 (223)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~ 215 (223)
..+.+++.. ...+...| |+..+-..+.+|.--+++|.+.+++|.++++|+++..|++..++..+|+..-....
T Consensus 73 ~~~~l~a~l-i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~ 146 (293)
T COG2962 73 LMLALTALL-IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL 146 (293)
T ss_pred HHHHHHHHH-HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 555554444 33466666 78888999999999999999999999999999999999999999999988765543
No 46
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.56 E-value=1.2e-06 Score=62.95 Aligned_cols=105 Identities=21% Similarity=0.311 Sum_probs=73.9
Q ss_pred hhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHH
Q 027434 109 NSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGIL 187 (223)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~si~~~l~~v~~~~~~~~ 187 (223)
...+.+.+.+.....++..+..+.... .+ |...+..|.++...++..+ ++.++.++ .++...++.|+++.++|.+
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 5 YLFSVLFLLIILLIRGRLRDLFRALRR-KP--WLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHh-Cc--HHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHH
Confidence 344566666655555554333221111 11 3345555666665556665 67888885 7778899999999999999
Q ss_pred hcCCcCCcchhhHHHHHHHHHHHHHhhhhh
Q 027434 188 LFKVPTSLENSASIFFGLLAGVFFARAKMW 217 (223)
Q Consensus 188 ~~~e~~~~~~~~G~~li~~g~~~~~~~~~~ 217 (223)
+++|+++..++.|.++++.|+.+......+
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999988765543
No 47
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.42 E-value=1.8e-05 Score=66.26 Aligned_cols=130 Identities=16% Similarity=0.088 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHH
Q 027434 66 YAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMT 145 (223)
Q Consensus 66 ~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (223)
.+..+...+.|+...+..|...+ +.++.+...+....+...+.+.....+... + +...|....
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~---------~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~-----~---~~~~~~~~~ 72 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVE---------SWPPLMMAGVRFLIAGILLLAFLLLRGHPL-----P---TLRQWLNAA 72 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhc---------cCCHHHHHHHHHHHHHHHHHHHHHHhCCCC-----C---cHHHHHHHH
Confidence 34566778899999999997654 578999999998888877776654432211 1 111244555
Q ss_pred HHHHHHHHHHHHH-HHHH-hhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHh
Q 027434 146 LSGFLGLAISFTS-MWFL-HQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 213 (223)
Q Consensus 146 ~~~~~~~~~~~~~-~~~~-~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 213 (223)
..|++.....+.. +... +++++..+++..++.|+.+.+++.+ ++|+++..+++|.++.++|+.+...
T Consensus 73 ~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 73 LIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence 6666654433333 4566 8899999999999999999999985 7999999999999999999887754
No 48
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.39 E-value=1.1e-06 Score=73.80 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=49.9
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc
Q 027434 2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG 55 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~ 55 (223)
+.|+.+.|++..+-+.....++.++++.+++|||++++++.|..+++.|..+..
T Consensus 68 ~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 68 FVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 357888999999999999999999999999999999999999999999998754
No 49
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.33 E-value=9e-06 Score=66.50 Aligned_cols=104 Identities=15% Similarity=0.094 Sum_probs=76.6
Q ss_pred CCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHHHHHH-HHHHhhcchhHHHHHhhh
Q 027434 98 NLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTS-MWFLHQTGATTYSLVGSL 176 (223)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~si~~~l 176 (223)
..++.+..++....+.+.+.+..... . .. .. |......+.++....+.. +.+++++++...+++..+
T Consensus 15 ~~~~~~~~~~r~~~~~l~l~~~~~~~---~------~~--~~-~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~ 82 (260)
T TIGR00950 15 QVPLYFAVFRRLIFALLLLLPLLRRR---P------PL--KR-LLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYL 82 (260)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhc---c------CH--hH-HHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhh
Confidence 45778877777766666655543221 0 11 11 334445555555454444 478999999999999999
Q ss_pred hhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHh
Q 027434 177 NKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 213 (223)
Q Consensus 177 ~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 213 (223)
+|+.+.+++.++++|+++..+++|+.+.+.|+.+...
T Consensus 83 ~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 83 APLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred hHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 9999999999999999999999999999999887654
No 50
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.32 E-value=8.4e-07 Score=64.00 Aligned_cols=53 Identities=25% Similarity=0.399 Sum_probs=50.9
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhh
Q 027434 2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISG 54 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~ 54 (223)
++++++++++..+.+.++.|+++.+++++++|||++++++.++.++++|+++.
T Consensus 72 ~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 72 FYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999875
No 51
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.31 E-value=5.3e-05 Score=65.14 Aligned_cols=134 Identities=13% Similarity=0.076 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCC-chhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHH
Q 027434 67 AWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLN-EFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMT 145 (223)
Q Consensus 67 ~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (223)
.+.+.--.+...+.+..|..++ ..+ |+.+..++.+.+...+.++. ..+ .....+.+. ....|-.++
T Consensus 52 ~~~~~wy~~s~~~~~~nK~vl~---------~~~~P~~l~~~~~~~~~l~~~~~~-~~~-~~~~~~~~~--~~~~~~~ll 118 (350)
T PTZ00343 52 LLFLTWYALNVLYVVDNKLALN---------MLPLPWTISSLQLFVGWLFALLYW-ATG-FRKIPRIKS--LKLFLKNFL 118 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------hCChhHHHHHHHHHHHHHHHHHHH-HhC-CCCCCCCCC--HHHHHHHHH
Confidence 3444444444556777888776 356 88888888777766544432 222 111111111 122456777
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHh
Q 027434 146 LSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 213 (223)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 213 (223)
..|+++....+..+.+++++++..++++-.++|+++.+++.++++|+++..++.|.++++.|+.+...
T Consensus 119 p~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 119 PQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 77888876655556788999999999999999999999999999999999999999999999987653
No 52
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.30 E-value=3.7e-05 Score=64.48 Aligned_cols=130 Identities=15% Similarity=0.062 Sum_probs=90.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHH
Q 027434 64 VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLV 143 (223)
Q Consensus 64 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (223)
.+++.+++++++|+......|...+ +++|.....+....+.+++.+.. ..... + .. + +..
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~---------~~~P~~~~~~R~~~a~l~l~~~~----~~~~~-~--~~-~---~~~ 63 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSE---------SLGPVGGAAMIYSVSGLLLLLTV----GFPRL-R--QF-P---KRY 63 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHc---------cCChHHHHHHHHHHHHHHHHHHc----ccccc-c--cc-c---HHH
Confidence 4677899999999999999998765 57898888887777766665431 11111 1 00 1 122
Q ss_pred HHHHHHHHHHHHHHHHHHH----hhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHh
Q 027434 144 MTLSGFLGLAISFTSMWFL----HQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 213 (223)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~----~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 213 (223)
.+..++.........+... +..++..++++.++.|+.+.+++.++++|+++..+++|+++.++|+.+...
T Consensus 64 ~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~ 137 (295)
T PRK11689 64 LLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG 137 (295)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence 2332332222222223333 346788889999999999999999999999999999999999999887643
No 53
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.23 E-value=8.1e-05 Score=62.51 Aligned_cols=124 Identities=12% Similarity=0.044 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHH
Q 027434 67 AWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTL 146 (223)
Q Consensus 67 ~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (223)
++.++++++|+...+..|...+ ++++....++....+...+.+.. ..+ + . + +.....
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~---------~~~p~~~~~~R~~~a~~~l~~~~--~~~-----~---~-~---~~~~~~ 63 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLH---------NMPPLMLAGLRFMLVAFPAIFFV--ARP-----K---V-P---LNLLLG 63 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHh---------cCCHHHHHHHHHHHHHHHHHHHh--cCC-----C---C-c---hHHHHH
Confidence 4578899999999999998754 57899999888777655443322 111 1 0 0 112222
Q ss_pred HHHHHHHHHHHH-HHHHhh-cchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHh
Q 027434 147 SGFLGLAISFTS-MWFLHQ-TGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 213 (223)
Q Consensus 147 ~~~~~~~~~~~~-~~~~~~-~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 213 (223)
.|.......+.. +...++ .++...+++.++.|+.+.++++++++|+++..+++|.++.++|+.+...
T Consensus 64 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 64 YGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence 344333333322 345666 5778889999999999999999999999999999999999999887653
No 54
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.21 E-value=8.6e-05 Score=62.35 Aligned_cols=124 Identities=6% Similarity=-0.037 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHHH
Q 027434 75 LTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAI 154 (223)
Q Consensus 75 ~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (223)
+...++++.|..+++ -..|..+.......+.....+. .-.+..+. +.. +...|..++..|++....
T Consensus 13 ~~~~~~~~NK~~l~~--------~~~P~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~-~~~~~~~~~~~g~~~~~~ 78 (302)
T TIGR00817 13 LNVYFNIYNKKLLNV--------FPYPYFKTLISLAVGSLYCLLS-WSSGLPKR----LKI-SSALLKLLLPVAIVHTIG 78 (302)
T ss_pred HHHHHHHHHHHHHhh--------CChhHHHHHHHHHHHHHHHHHH-HHhCCCCC----CCC-CHHHHHHHHHHHHHHHHH
Confidence 334455677777652 1246666666655554444332 11111111 111 122355667777776444
Q ss_pred HHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHH
Q 027434 155 SFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA 212 (223)
Q Consensus 155 ~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~ 212 (223)
....+.+++++++..+++..+..|+++.+++.++++|+++..++.|.+++++|+.+..
T Consensus 79 ~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 79 HVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 4444578999999999999999999999999999999999999999999999987653
No 55
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.17 E-value=3.2e-06 Score=60.54 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=50.7
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc
Q 027434 2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG 55 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~ 55 (223)
..+++++|++.+..+-++.++++.+.+++++|||+++++++|+.++++|+++..
T Consensus 55 ~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 55 LLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999999999999999999998764
No 56
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.13 E-value=2.6e-05 Score=55.82 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=52.6
Q ss_pred HHHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHh
Q 027434 152 LAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 213 (223)
Q Consensus 152 ~~~~~~~~-~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 213 (223)
...++..+ .++|+.+...+....++.++.+.++|+++|||++|..+++|++++++|+.....
T Consensus 47 ~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 47 LGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 33344443 578999999888888899999999999999999999999999999999887653
No 57
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.05 E-value=0.00012 Score=61.27 Aligned_cols=134 Identities=11% Similarity=0.100 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHH
Q 027434 65 GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVM 144 (223)
Q Consensus 65 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (223)
|.+++++++++|+...+..|+.. +.++.+.. ....+............++. ..++..+..-
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~----------g~~~~~~~--~~~~g~l~~~~~~~~~~~~~-------~~~~~~~~~g 62 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG----------GGPYSQTL--GTTFGALILSIAIAIFVLPE-------FWALSIFLVG 62 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC----------CCHHHHHH--HHHHHHHHHHHHHHHHhCCc-------ccccHHHHHH
Confidence 67889999999999999998762 22333333 12223333333322222211 1112333333
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHhh-hhhHHHHHHHHHhcCCcCCcch----hhHHHHHHHHHHHHHhhhhh
Q 027434 145 TLSGFLGLAISFTSMWFLHQTGATTYSLVGS-LNKIPLSVAGILLFKVPTSLEN----SASIFFGLLAGVFFARAKMW 217 (223)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~-l~~v~~~~~~~~~~~e~~~~~~----~~G~~li~~g~~~~~~~~~~ 217 (223)
++.|..=..-+++.+.++|+++...+-...+ +.++..++++.++|+|+.+..+ ++|.++++.|+++....+++
T Consensus 63 ~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~ 140 (290)
T TIGR00776 63 LLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDK 140 (290)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccc
Confidence 3434432222455557899988888866666 7788999999999999999999 99999999999987665433
No 58
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.92 E-value=0.00039 Score=58.53 Aligned_cols=129 Identities=16% Similarity=0.190 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhccCCC-CchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHHHHHH
Q 027434 75 LTASYSLTLRRVMDTAKQVTKSGNL-NEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLA 153 (223)
Q Consensus 75 ~~a~~~v~~k~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (223)
++..+.+.+++..++.. .. .+.-+.+.+.........+...... .+...+ .+ +......+++-..
T Consensus 11 ~~~~~g~~qE~i~~~~~------~~~~~~~lt~~q~~~~~~~~~~~~~~~~-~~~~~~-----~~--~~~~~~~~~~~~~ 76 (303)
T PF08449_consen 11 GCCSYGILQEKIMTTPY------GSPFPLFLTFVQFAFNALFSFILLSLFK-FPKSRK-----IP--LKKYAILSFLFFL 76 (303)
T ss_pred HHHHHHHHHHHHHcCCC------CCcccHHHHHHHHHHHHHHHHHHHHhcc-ccCCCc-----Ch--HHHHHHHHHHHHH
Confidence 34456788888877421 22 3555566665555554444433322 011001 11 2223333444444
Q ss_pred HHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhh
Q 027434 154 ISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW 217 (223)
Q Consensus 154 ~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~ 217 (223)
-......++++++..+..+.-+.+++.+++++.++++++.+..++.+.+++.+|+.++...+.+
T Consensus 77 ~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~ 140 (303)
T PF08449_consen 77 ASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSS 140 (303)
T ss_pred HHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccc
Confidence 4556667899999999999999999999999999999999999999999999999988775544
No 59
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.89 E-value=0.00093 Score=54.97 Aligned_cols=140 Identities=22% Similarity=0.215 Sum_probs=90.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHH
Q 027434 63 AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWL 142 (223)
Q Consensus 63 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (223)
..+....+..++.++......|+..++ ..+......+....+.....+.. ..+..... +.. .+ +.
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~-~~--~~ 70 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVES--------LDPFLFAAALRFLIAALLLLPLL--LLEPRGLR--PAL-RP--WL 70 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc--------cCChHHHHHHHHHHHHHHHHHHH--Hhhccccc--ccc-cc--hH
Confidence 356677778888888888888877542 23444444444444444422111 11110001 111 11 12
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhcchhHHHHHhhhhhHHHHHHHH-HhcCCcCCcchhhHHHHHHHHHHHHHhhhhh
Q 027434 143 VMTLSGFLGLAISFTS-MWFLHQTGATTYSLVGSLNKIPLSVAGI-LLFKVPTSLENSASIFFGLLAGVFFARAKMW 217 (223)
Q Consensus 143 ~~~~~~~~~~~~~~~~-~~~~~~~s~~~~si~~~l~~v~~~~~~~-~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~ 217 (223)
...+.+.+........ +.+++++++..++...+..|+.+.+++. ++++|+++..++.|..+.+.|+.+.......
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 71 LLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 3344455554444444 4679999999999999999999999996 6779999999999999999999987765543
No 60
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.72 E-value=0.0027 Score=47.24 Aligned_cols=130 Identities=15% Similarity=0.213 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHH
Q 027434 66 YAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMT 145 (223)
Q Consensus 66 ~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (223)
.++++.+..+.+++.....++.++. -+++.-.+.+...+...+.+...+.++. +..+ ..+...|. .
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~--------gs~~~as~i~~~~G~i~~~i~~~~~~~~-~~~~---~~~~p~w~--~ 68 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKAL--------GSPLVASFISFGVGFILLLIILLITGRP-SLAS---LSSVPWWA--Y 68 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--------CccHHHHHHHHHHHHHHHHHHHHHhccc-ccch---hccCChHH--h
Confidence 5678888888999988888876631 1488888888888888888777776654 2221 11111233 3
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHhhh-hhHHHHHHHHH-hc---CCcCCcchhhHHHHHHHHHH
Q 027434 146 LSGFLGLAISFTSMWFLHQTGATTYSLVGSL-NKIPLSVAGIL-LF---KVPTSLENSASIFFGLLAGV 209 (223)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l-~~v~~~~~~~~-~~---~e~~~~~~~~G~~li~~g~~ 209 (223)
..|++|...-++....+++.++..+...... +-+.+.++..+ +| .++++....+|..+.++|+.
T Consensus 69 lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 69 LGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred ccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 3788988887777778899998888776666 44555566664 34 37889999999999999975
No 61
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.62 E-value=0.0004 Score=50.26 Aligned_cols=65 Identities=15% Similarity=0.254 Sum_probs=49.0
Q ss_pred HHHHHHHH-HHHhhcch-hHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhh
Q 027434 152 LAISFTSM-WFLHQTGA-TTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKM 216 (223)
Q Consensus 152 ~~~~~~~~-~~~~~~s~-~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 216 (223)
...++..+ .++|+.+. .-+++..-+..+.+.+.|+++|||++|+.+++|+++++.|+...+..++
T Consensus 40 ~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 40 ISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 33344443 46676443 3455656677888999999999999999999999999999998876443
No 62
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.60 E-value=0.00011 Score=53.95 Aligned_cols=57 Identities=11% Similarity=0.168 Sum_probs=50.9
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHHH--HhCcccChhHHHHHHHHHHhhhhhccc
Q 027434 1 MSLSLKYINVAMVTVLKNVTNVITAVGEMY--LFNKRHDNRVWAALFLMIISAISGGIT 57 (223)
Q Consensus 1 ~~~al~~~~~~~~~~l~~~~pi~~~i~~~~--~~~e~~s~~~~~~l~l~~~Gv~~~~~~ 57 (223)
|+++++..|++.+.-+.+..+.++.+.++. ++||++|+++++|+.++++|+++....
T Consensus 65 w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 65 WLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 467889999999999999998888888885 899999999999999999999997654
No 63
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.58 E-value=0.00051 Score=48.98 Aligned_cols=65 Identities=11% Similarity=0.059 Sum_probs=49.7
Q ss_pred HHHHHHHH-HHHhhcch-hHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhh
Q 027434 152 LAISFTSM-WFLHQTGA-TTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKM 216 (223)
Q Consensus 152 ~~~~~~~~-~~~~~~s~-~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 216 (223)
...++..+ .++|+.+. ..+++..-+..+.+.+.|+++|||++|+.+++|+++++.|+...+..++
T Consensus 40 ~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~ 106 (110)
T PRK09541 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSR 106 (110)
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 33344443 46676543 3456666678889999999999999999999999999999998876543
No 64
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.52 E-value=0.0019 Score=54.98 Aligned_cols=70 Identities=11% Similarity=0.115 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHh
Q 027434 144 MTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 213 (223)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 213 (223)
.++.+++=..-+|....+.++++.+...++.+...+.+.+++++++++++++.+++|+.+++.|+.+...
T Consensus 82 y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~ 151 (334)
T PF06027_consen 82 YFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVV 151 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheee
Confidence 3444777777788888899999999999999999999999999999999999999999999999886544
No 65
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.45 E-value=3.9e-05 Score=55.40 Aligned_cols=53 Identities=21% Similarity=0.317 Sum_probs=45.6
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc
Q 027434 3 LSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG 55 (223)
Q Consensus 3 ~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~ 55 (223)
.|+|.-++|...=+-.++|+++.+++++++|||+|..+++|++++.+|+++..
T Consensus 86 ~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 86 RALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 45556666666667788999999999999999999999999999999998764
No 66
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.40 E-value=0.0082 Score=50.21 Aligned_cols=105 Identities=7% Similarity=-0.032 Sum_probs=74.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHH
Q 027434 63 AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWL 142 (223)
Q Consensus 63 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (223)
..|..+.++++++++......|...+ +.++.+..++.+..+.+.+.+....... +.+ ...|.
T Consensus 11 ~~~~~~~~la~~~~~~~~~~~K~~~~---------~~~~~~~~~~R~~~a~l~l~~~~~~~~~-----~~~----~~~~~ 72 (293)
T PRK10532 11 WLPILLLLIAMASIQSGASLAKSLFP---------LVGAPGVTALRLALGTLILIAIFKPWRL-----RFA----KEQRL 72 (293)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHH---------HcCHHHHHHHHHHHHHHHHHHHHhHHhc-----cCC----HHHHH
Confidence 57899999999999999999998765 3788999999988887777654321111 111 11122
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHH
Q 027434 143 VMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAG 185 (223)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~ 185 (223)
..+..|.+.....+..+++++++++..+++.....|+...+++
T Consensus 73 ~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~ 115 (293)
T PRK10532 73 PLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS 115 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 3334455444445555678899999999999999999988776
No 67
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.0006 Score=56.82 Aligned_cols=56 Identities=13% Similarity=0.177 Sum_probs=50.8
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc
Q 027434 2 SLSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT 57 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~ 57 (223)
+.|.-+.|.+..+-+-+++.+..++++..++|||.+....+|+.++++|..+...+
T Consensus 82 FaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h 137 (335)
T KOG2922|consen 82 FAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH 137 (335)
T ss_pred HHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence 35677889999999999999999999999999999999999999999999987543
No 68
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.28 E-value=0.001 Score=54.32 Aligned_cols=75 Identities=12% Similarity=0.096 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhh
Q 027434 143 VMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW 217 (223)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~ 217 (223)
...+.+++=..-+...|.++++.+|.+..+....|.+.+.+++.++++.+++..||.+.++.+.|+.+....+..
T Consensus 19 ~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 19 KLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 344444554555677778899999999999999999999999999999999999999999999999987654443
No 69
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.0032 Score=44.27 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=49.1
Q ss_pred HHHHH-HHHhhcc-hhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhh
Q 027434 155 SFTSM-WFLHQTG-ATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA 214 (223)
Q Consensus 155 ~~~~~-~~~~~~s-~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~ 214 (223)
+|... .++|+.+ .+.+++..-.-.+.+.+.|+++|||++|..+++|..++++|+...+..
T Consensus 43 sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 43 SFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 44443 5677754 345788888889999999999999999999999999999999877654
No 70
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.16 E-value=0.02 Score=40.75 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=48.6
Q ss_pred HHHHHHHHH-HHHhhcch-hHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHH
Q 027434 151 GLAISFTSM-WFLHQTGA-TTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA 212 (223)
Q Consensus 151 ~~~~~~~~~-~~~~~~s~-~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~ 212 (223)
+..+++... .++|+.+. +.+++..-+-.+.+.+.|+++|||++|+.+++|+.+++.|+...+
T Consensus 44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 333444443 46777543 457788888899999999999999999999999999999988753
No 71
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.15 E-value=0.00083 Score=48.59 Aligned_cols=55 Identities=15% Similarity=0.162 Sum_probs=49.0
Q ss_pred cccccccchhHHHHH-HHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcc
Q 027434 2 SLSLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGI 56 (223)
Q Consensus 2 ~~al~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~ 56 (223)
..+++++|++.+-.+ ....-+.+.+.+.++++|++|+.+++++.++++|++....
T Consensus 48 s~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 48 SFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 467889999988877 4688899999999999999999999999999999988744
No 72
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.15 E-value=0.0036 Score=44.25 Aligned_cols=54 Identities=15% Similarity=0.242 Sum_probs=45.8
Q ss_pred HHHhhcc-hhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHh
Q 027434 160 WFLHQTG-ATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 213 (223)
Q Consensus 160 ~~~~~~s-~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 213 (223)
.++|+.+ .+.+++..-+-.+.+.+.|+++|||++|+.+++|+.+++.|+...+.
T Consensus 48 ~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 48 WAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 4567644 45578888888999999999999999999999999999999987653
No 73
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.02 E-value=0.0057 Score=51.50 Aligned_cols=117 Identities=16% Similarity=0.163 Sum_probs=80.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHH
Q 027434 62 HAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFW 141 (223)
Q Consensus 62 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (223)
...|..+++.++++.+....++||-.++.+. .+.+.-+. . .+.+.++.+|
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~----~~~~~~~~---------------------~-----~~~l~~~~W~ 54 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR----GSLRAGSG---------------------G-----RSYLRRPLWW 54 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccccccch---------------------h-----hHHHhhHHHH
Confidence 4589999999999999999999997654321 01111000 0 0011123324
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHH
Q 027434 142 LVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA 212 (223)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~ 212 (223)
.- ......+-..+ +.++...+.+..+.++.+.-+.+.+++.++++|+++...+.|+++++.|..+.-
T Consensus 55 ~G-~~~~~~g~~~~---~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 55 IG-LLLMVLGEILN---FVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HH-HHHHhcchHHH---HHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 33 33333443333 346677888888888889999999999999999999999999999999987654
No 74
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.97 E-value=0.0016 Score=46.49 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=48.2
Q ss_pred cccccccchhHHHHHH-HHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcc
Q 027434 2 SLSLKYINVAMVTVLK-NVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGI 56 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~-~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~ 56 (223)
..+++++|++.+--+- ...-+.+.+.+.+++||++++.+++++.++++|++..-.
T Consensus 48 ~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 48 AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3578889999988774 477888999999999999999999999999999998743
No 75
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.88 E-value=0.0021 Score=45.45 Aligned_cols=54 Identities=15% Similarity=0.162 Sum_probs=46.1
Q ss_pred cccccccchhHHHHHHH-HHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc
Q 027434 2 SLSLKYINVAMVTVLKN-VTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG 55 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~~-~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~ 55 (223)
..+++++|++.+-.+=. ...+.+.+.+.+++||++|+.+++++.++++|++..-
T Consensus 47 s~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 47 AWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 45778888888665544 6778899999999999999999999999999998763
No 76
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.86 E-value=0.0023 Score=45.51 Aligned_cols=53 Identities=21% Similarity=0.308 Sum_probs=45.1
Q ss_pred cccccccchhHHHHHHH-HHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhh
Q 027434 2 SLSLKYINVAMVTVLKN-VTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISG 54 (223)
Q Consensus 2 ~~al~~~~~~~~~~l~~-~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~ 54 (223)
+.+++++|++.+-.+=. ...+.+.+.+.+++||++++.+++++.+++.|++..
T Consensus 53 s~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 53 SQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 45788899988665544 667788999999999999999999999999999875
No 77
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.75 E-value=0.31 Score=41.82 Aligned_cols=207 Identities=12% Similarity=0.104 Sum_probs=107.0
Q ss_pred cccccchhHHHHH-HHHHHHHHHHHHHHHhCccc---C----hhHHHHHHHHHHhhhhhcc----ccc--------ccc-
Q 027434 4 SLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRH---D----NRVWAALFLMIISAISGGI----TDL--------SFH- 62 (223)
Q Consensus 4 al~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~---s----~~~~~~l~l~~~Gv~~~~~----~d~--------~~~- 62 (223)
+.+|+.+|...-+ ..++-+...++..++++|.. + ..-..+++++++|+.+... .|. +++
T Consensus 93 s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~~~~~~~~~~~~~ 172 (345)
T PRK13499 93 TMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKERKMGIKKAEEFNL 172 (345)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccch
Confidence 4455555544433 34455667777778888754 2 2367788899999999766 332 122
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhh----hHHHHHHHHHHH---hccccc-cccCCC
Q 027434 63 AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNS----LSLPLGVLLVIV---FNEVDY-LSRTPL 134 (223)
Q Consensus 63 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~-~~~~~~ 134 (223)
..|..+++++.+.++.|......-..-.+.+ .....++.....-+.. -+.....+++.. .++..+ ..++..
T Consensus 173 ~KGi~ialisgi~~~~f~~~~~~~~~~~~~a-~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~ 251 (345)
T PRK13499 173 KKGLILAVMSGIFSACFSFAMDAGKPMHEAA-AALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSL 251 (345)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhccchhhhh-hhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccc
Confidence 5899999999999999995444422110000 0012233222211111 111112222221 111111 111111
Q ss_pred CccchHHHHHHHHHHHHHHH--HHHHH-HHHhhcchh----HHHHHhhhhhHHHHHHHHHhcCCcCC------cchhhHH
Q 027434 135 LRLPSFWLVMTLSGFLGLAI--SFTSM-WFLHQTGAT----TYSLVGSLNKIPLSVAGILLFKVPTS------LENSASI 201 (223)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~s~~----~~si~~~l~~v~~~~~~~~~~~e~~~------~~~~~G~ 201 (223)
. .+..+-..+++.+.|... +...+ ..-++.+.. ...+...+.-+++.+.|+ +++|.=+ -..++|.
T Consensus 252 ~-~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~ 329 (345)
T PRK13499 252 A-KPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGC 329 (345)
T ss_pred c-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHH
Confidence 0 011122333333333322 22222 233444322 222444666799999999 5999877 6778999
Q ss_pred HHHHHHHHHHHh
Q 027434 202 FFGLLAGVFFAR 213 (223)
Q Consensus 202 ~li~~g~~~~~~ 213 (223)
++++.|..+...
T Consensus 330 vliI~g~~lig~ 341 (345)
T PRK13499 330 VVIILAANIVGL 341 (345)
T ss_pred HHHHHHHHHHhh
Confidence 999999887654
No 78
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=96.68 E-value=0.0033 Score=47.04 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=49.4
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc
Q 027434 3 LSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG 55 (223)
Q Consensus 3 ~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~ 55 (223)
..++++++-+++++.....+.+.+++.++++|+++..++.|+++++.|+....
T Consensus 100 ~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 100 LLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 45788999999999999999999999999999999999999999999998764
No 79
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.61 E-value=0.0088 Score=41.28 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=27.1
Q ss_pred HHHHHH-HHHhhcchhHH-HHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHH
Q 027434 154 ISFTSM-WFLHQTGATTY-SLVGSLNKIPLSVAGILLFKVPTSLENSASIFFG 204 (223)
Q Consensus 154 ~~~~~~-~~~~~~s~~~~-si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li 204 (223)
.++..+ .++|+.+...+ .+..-+..+...+.|.++|||++|+.++.|+.++
T Consensus 41 ~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 41 LSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 343333 56787655444 6666678899999999999999999999999874
No 80
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.57 E-value=0.0007 Score=55.12 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhh
Q 027434 145 TLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 215 (223)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~ 215 (223)
++=|+.|+.--+..|++.++.+-..+.++....|++++++++.+++|+.|..+..|..+.+.|+.+..+.+
T Consensus 101 iLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 101 ILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred EeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 33455555445555678899999999999999999999999999999999999999999999998876543
No 81
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.55 E-value=0.0067 Score=42.66 Aligned_cols=54 Identities=22% Similarity=0.225 Sum_probs=45.3
Q ss_pred ccccccchhHHHHH-HHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcc
Q 027434 3 LSLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGI 56 (223)
Q Consensus 3 ~al~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~ 56 (223)
.|+|++|++.+-.+ ...-.+-+.+.+.+++||+.++.+++++.++++|++..-.
T Consensus 49 ~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 49 LALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 57888898876544 4555777999999999999999999999999999987643
No 82
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.49 E-value=0.17 Score=37.93 Aligned_cols=139 Identities=17% Similarity=0.161 Sum_probs=86.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHH
Q 027434 63 AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWL 142 (223)
Q Consensus 63 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (223)
+...+.++.+..+-..+.-...|+.+.. + ++.--...++..+...+..+....+...+. .. ....| .|.
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~-------~-spl~As~isf~vGt~~L~~l~l~~~~~~~~-a~-~~~~p-wW~ 72 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYL-------G-SPLLASLISFLVGTVLLLILLLIKQGHPGL-AA-VASAP-WWA 72 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHc-------C-ChHHHHHHHHHHHHHHHHHHHHHhcCCCch-hh-ccCCc-hHH
Confidence 3566778888888888888888876642 1 455556667777777777666664333222 11 11112 132
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhh-hhHHHHHHHHH-hcC---CcCCcchhhHHHHHHHHHHHHHhh
Q 027434 143 VMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSL-NKIPLSVAGIL-LFK---VPTSLENSASIFFGLLAGVFFARA 214 (223)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l-~~v~~~~~~~~-~~~---e~~~~~~~~G~~li~~g~~~~~~~ 214 (223)
...|.+|..+-.+.-....+.+++++...... +-+.++++..+ ++| .++|..-++|++++++|+++....
T Consensus 73 --~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~ 147 (150)
T COG3238 73 --WIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF 147 (150)
T ss_pred --HHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence 34467776655555455677777666554444 55666666655 333 578999999999999995554443
No 83
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.27 E-value=0.16 Score=43.15 Aligned_cols=137 Identities=12% Similarity=0.123 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccc--cccc---cCCCCccc-hHHHH
Q 027434 70 IINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEV--DYLS---RTPLLRLP-SFWLV 143 (223)
Q Consensus 70 l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~-~~~~~ 143 (223)
+.-.+-.+......|+..+++ ..+..+.+.++..=+.-.+++....+..+.. +... +...+..+ +.+ -
T Consensus 21 ~~~t~~~~~l~l~l~ys~~~~-----~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~l-k 94 (345)
T KOG2234|consen 21 IVLTAQNTALTLLLRYSRTRE-----KPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETL-K 94 (345)
T ss_pred HHHHHHHhhHHHHHHHHhcCC-----CCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHH-H
Confidence 334445556667777665432 2356666666665555555555544433211 1110 10111111 111 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHH
Q 027434 144 MTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA 212 (223)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~ 212 (223)
+.+-+.+=..-+...|...++.+|+++.+..++|...+.+++..+++++++..||...++-..|+.+..
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 222222223334455567889999999999999999999999999999999999999999899988776
No 84
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.19 E-value=0.096 Score=44.87 Aligned_cols=138 Identities=13% Similarity=0.109 Sum_probs=77.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHH-----hhhHHHHHHHHHHHhccccccccCCCCcc
Q 027434 63 AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLN-----NSLSLPLGVLLVIVFNEVDYLSRTPLLRL 137 (223)
Q Consensus 63 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (223)
..|+++.+++++|++.+.+-.|| .|+ .+||.. +- .-.-.|... ..+..++..+..+ .. +
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~----------w~wE~~-W~v~gi~~wl~~~~~~-g~~~~~~f~~~~~--~~-~ 69 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKK-VKK----------WSWETM-WSVGGIFSWLILPWLI-AALLLPDFWAYYS--SF-S 69 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccc-cCC----------CchhHH-HHHHHHHHHHHHHHHH-HHHHhhhHHHHHH--hc-C
Confidence 47999999999999999999888 332 344433 21 111111111 1111122212111 11 2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhcchhH-HHHHhhhhhHHHHHHHHHhcCCcC---C----cchhhHHHHHHHHHH
Q 027434 138 PSFWLVMTLSGFLGLAISFTSMWFLHQTGATT-YSLVGSLNKIPLSVAGILLFKVPT---S----LENSASIFFGLLAGV 209 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~si~~~l~~v~~~~~~~~~~~e~~---~----~~~~~G~~li~~g~~ 209 (223)
+..+..-.+.|.+=..-+...+..+|+.+-.. ..+..-+.-+.+++++.+++||=. + ....+|.+++++|+.
T Consensus 70 ~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~ 149 (345)
T PRK13499 70 GSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVA 149 (345)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHH
Confidence 23344444444443333444445667655333 333344577889999999998532 2 346778889999999
Q ss_pred HHHhhhh
Q 027434 210 FFARAKM 216 (223)
Q Consensus 210 ~~~~~~~ 216 (223)
+.+++..
T Consensus 150 l~s~Ag~ 156 (345)
T PRK13499 150 IVGRAGQ 156 (345)
T ss_pred HHHHhhh
Confidence 9888333
No 85
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.11 E-value=0.00034 Score=56.20 Aligned_cols=192 Identities=16% Similarity=0.179 Sum_probs=114.4
Q ss_pred ccccccchhHHHHHHH-HHHHHHHHHHHHHhCcccChhHH----HHHHHHHHhhhhhccccc--------ccchhhHHHH
Q 027434 3 LSLKYINVAMVTVLKN-VTNVITAVGEMYLFNKRHDNRVW----AALFLMIISAISGGITDL--------SFHAVGYAWQ 69 (223)
Q Consensus 3 ~al~~~~~~~~~~l~~-~~pi~~~i~~~~~~~e~~s~~~~----~~l~l~~~Gv~~~~~~d~--------~~~~~G~~~~ 69 (223)
.|.+++.+|.+.=+.. .+-+-+-+++.+.++|+.+..+. .++++.++|+.+.++.|. ++--.|....
T Consensus 78 ka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L 157 (288)
T COG4975 78 KAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVIL 157 (288)
T ss_pred hheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeee
Confidence 4555655555443333 23444667888999999888765 578888899999876552 1124688888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHHHHHHH
Q 027434 70 IINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGF 149 (223)
Q Consensus 70 l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (223)
+.|.+.|..|.+..+.. +.+.++...-++.-.....+.+....+|.. .+...|..++ .|.
T Consensus 158 ~iSt~GYv~yvvl~~~f-----------~v~g~saiLPqAiGMv~~ali~~~~~~~~~--------~~K~t~~nii-~G~ 217 (288)
T COG4975 158 LISTLGYVGYVVLFQLF-----------DVDGLSAILPQAIGMVIGALILGFFKMEKR--------FNKYTWLNII-PGL 217 (288)
T ss_pred eeeccceeeeEeeeccc-----------cccchhhhhHHHHHHHHHHHHHhhcccccc--------hHHHHHHHHh-hHH
Confidence 88999999999887765 456666555443322222222222221111 1222243332 333
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchh----hHHHHHHHHHHHHHhh
Q 027434 150 LGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENS----ASIFFGLLAGVFFARA 214 (223)
Q Consensus 150 ~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~----~G~~li~~g~~~~~~~ 214 (223)
.=..-+...+.+-++.+..+.=....+--+++++-|+++++|+=|-.++ +|+++++.|..+....
T Consensus 218 ~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~~ 286 (288)
T COG4975 218 IWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGIA 286 (288)
T ss_pred HHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhee
Confidence 3222244444445555444333344455788889999999999987664 5777778887766544
No 86
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.01 E-value=0.0069 Score=41.81 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=25.4
Q ss_pred cccccccchhHHHH-HHHHHHHHHHHHHHHHhCcccChhHHHHHHHH
Q 027434 2 SLSLKYINVAMVTV-LKNVTNVITAVGEMYLFNKRHDNRVWAALFLM 47 (223)
Q Consensus 2 ~~al~~~~~~~~~~-l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~ 47 (223)
..+++++|++.+-- ......+.+.+.+.+++||+.|+.++.++.++
T Consensus 47 ~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 47 SLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 46788999998855 45688999999999999999999999998764
No 87
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=95.82 E-value=0.017 Score=46.83 Aligned_cols=53 Identities=11% Similarity=0.246 Sum_probs=48.4
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc
Q 027434 3 LSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG 55 (223)
Q Consensus 3 ~al~~~~~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~ 55 (223)
.++.++|...+.++.++.|.+-++.+.++++|++|..||+++..++.++.-.+
T Consensus 229 iAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~ 281 (292)
T COG5006 229 IALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGST 281 (292)
T ss_pred HHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccc
Confidence 46788999999999999999999999999999999999999999988876443
No 88
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=95.72 E-value=0.15 Score=42.13 Aligned_cols=80 Identities=14% Similarity=0.168 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHh-hhhhHHHHHHHHHhcCCcCCcchhh----HHHHHHHHHHHHHhhh
Q 027434 141 WLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVG-SLNKIPLSVAGILLFKVPTSLENSA----SIFFGLLAGVFFARAK 215 (223)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~-~l~~v~~~~~~~~~~~e~~~~~~~~----G~~li~~g~~~~~~~~ 215 (223)
|..-+++|.+=..-+...|...++.+..++-.+. -++-+.+.++|.++|||--+..+++ +.++++.|+.+.++++
T Consensus 45 ~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~ 124 (269)
T PF06800_consen 45 FIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQD 124 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccc
Confidence 4455556665444455555666655444433332 2567889999999999977765554 5667888999888877
Q ss_pred hhhhh
Q 027434 216 MWERS 220 (223)
Q Consensus 216 ~~~~~ 220 (223)
+++++
T Consensus 125 ~~~~~ 129 (269)
T PF06800_consen 125 KKSDK 129 (269)
T ss_pred ccccc
Confidence 76554
No 89
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=93.64 E-value=0.08 Score=45.37 Aligned_cols=75 Identities=11% Similarity=0.019 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhhh
Q 027434 144 MTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWE 218 (223)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~ 218 (223)
-++-|.+=++-+|....++++++....+++.+....++..+|.++-+|++|+...++.++.+.|+++.+....|+
T Consensus 162 sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 162 SLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 334455556667776678999999999999999999999999999999999999999999999999877654433
No 90
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=93.36 E-value=0.059 Score=38.49 Aligned_cols=51 Identities=16% Similarity=0.241 Sum_probs=41.8
Q ss_pred cccccchhHHHHH-HHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhh
Q 027434 4 SLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISG 54 (223)
Q Consensus 4 al~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~ 54 (223)
.++..++|.+.-+ .+++=+||++.++++.+|..+++.+.|+.+++.|+.+.
T Consensus 61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 3556666666666 48888999999988888888999999999999999764
No 91
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=92.01 E-value=5.5 Score=34.06 Aligned_cols=139 Identities=11% Similarity=0.096 Sum_probs=73.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHH----HHHhhhHHHHHHHHHHHhccccccccCCCCccc
Q 027434 63 AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMV----LLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLP 138 (223)
Q Consensus 63 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (223)
..|.++..+++++.+.+.+=.||.. --+||.. ...+-.-.|....... ..|..+..+..+ ..
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkvk-----------~WsWEs~Wlv~gi~swli~P~~~a~l~-ip~~~~i~~~~~--~~ 71 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKVK-----------GWSWESYWLVQGIFSWLIVPWLWALLA-IPDFFSIYSATP--AS 71 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhcC-----------CccHHHHHHHHHHHHHHHHHHHHHHHh-CCcHHHHHHhCC--hh
Confidence 5799999999999999999888862 2445532 2222233333332221 122222221111 11
Q ss_pred hHHHHHHHHHHHHHHHHHHH--H-HHHhhcc-hhHHHHHhhhhhHHHHHHHHHhcC-------CcCCcchhhHHHHHHHH
Q 027434 139 SFWLVMTLSGFLGLAISFTS--M-WFLHQTG-ATTYSLVGSLNKIPLSVAGILLFK-------VPTSLENSASIFFGLLA 207 (223)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~--~-~~~~~~s-~~~~si~~~l~~v~~~~~~~~~~~-------e~~~~~~~~G~~li~~g 207 (223)
. +....+++.+..... | ..+|+.+ ++..++..-+-.++.+++..++.| ++-.....+|.+++++|
T Consensus 72 ~----l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiG 147 (344)
T PF06379_consen 72 T----LFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIG 147 (344)
T ss_pred H----HHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHH
Confidence 1 122233333332222 2 3466643 333444444445555555555433 23345788999999999
Q ss_pred HHHHHhhhhhhh
Q 027434 208 GVFFARAKMWER 219 (223)
Q Consensus 208 ~~~~~~~~~~~~ 219 (223)
+.+..++..+|.
T Consensus 148 Iai~g~AG~~Ke 159 (344)
T PF06379_consen 148 IAICGKAGSMKE 159 (344)
T ss_pred HHHHhHHHHhhh
Confidence 999887655433
No 92
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=91.35 E-value=0.53 Score=33.65 Aligned_cols=50 Identities=16% Similarity=0.054 Sum_probs=38.1
Q ss_pred HHhhcchhHHHHH-hhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHH
Q 027434 161 FLHQTGATTYSLV-GSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVF 210 (223)
Q Consensus 161 ~~~~~s~~~~si~-~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~ 210 (223)
.+++.+-+.+..+ +.+.-+++.+.|+++.+|..+...++|+++++.|+.+
T Consensus 61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 4566554444444 5677888999998888888899999999999999754
No 93
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=91.08 E-value=0.19 Score=39.52 Aligned_cols=61 Identities=13% Similarity=0.047 Sum_probs=52.8
Q ss_pred HHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhh
Q 027434 155 SFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 215 (223)
Q Consensus 155 ~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~ 215 (223)
+|....++++.+|+.++-...++..+.-+++++++|+++....++...+.+.|+.+.++..
T Consensus 67 NY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~D 127 (290)
T KOG4314|consen 67 NYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYAD 127 (290)
T ss_pred CcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEecc
Confidence 5554467899999999999999999999999999999999999999998888877766543
No 94
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=90.68 E-value=1.6 Score=35.43 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=50.6
Q ss_pred HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhhh
Q 027434 160 WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWE 218 (223)
Q Consensus 160 ~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~ 218 (223)
.+++..+=-+.-+.-+++|+..+++|+.+.++...|..+.=...++.|+.++-+.++|.
T Consensus 104 ~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv 162 (337)
T KOG1580|consen 104 QALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKV 162 (337)
T ss_pred chhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcccccc
Confidence 56677665566677889999999999999999999999999999999999998876654
No 95
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=90.20 E-value=8 Score=32.56 Aligned_cols=75 Identities=20% Similarity=0.123 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhh
Q 027434 143 VMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW 217 (223)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~ 217 (223)
..-+.++....-+.+.|-++|++|=-+..+.-++|-+..++++.++.+.+.+.....=..++-.|+.++...+.+
T Consensus 85 ~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s 159 (327)
T KOG1581|consen 85 KYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNS 159 (327)
T ss_pred HHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCC
Confidence 344445555656777778999999888889999999999999999999999999999999989998888765443
No 96
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.09 E-value=0.13 Score=43.23 Aligned_cols=120 Identities=14% Similarity=0.155 Sum_probs=78.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchH
Q 027434 61 FHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSF 140 (223)
Q Consensus 61 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (223)
.+..|..+++.+.+..+...++.||-.+|....+. +. ++. .++...++.
T Consensus 18 d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~--ra------------------------~~g----g~~yl~~~~- 66 (335)
T KOG2922|consen 18 DNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGL--RA------------------------GEG----GYGYLKEPL- 66 (335)
T ss_pred CceeeeeehhhccEEEeeehhhhHHHHHHHhhhcc--cc------------------------cCC----CcchhhhHH-
Confidence 44678888888888888888888886664211000 00 010 111112233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhh
Q 027434 141 WLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA 214 (223)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~ 214 (223)
|....+.-..|=..+|.. ....+++..+.++.+.-+...+++..+++|++++...+|++++++|....-.+
T Consensus 67 Ww~G~ltm~vGei~NFaA---YaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h 137 (335)
T KOG2922|consen 67 WWAGMLTMIVGEIANFAA---YAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH 137 (335)
T ss_pred HHHHHHHHHHHhHhhHHH---HhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence 334444455555555554 45566666666777888999999999999999999999999999997755433
No 97
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=87.77 E-value=0.26 Score=40.00 Aligned_cols=135 Identities=10% Similarity=0.124 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHH
Q 027434 65 GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVM 144 (223)
Q Consensus 65 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (223)
.++.+++-++.|........|.-. +|++...-+++-++.+.++.. ++-+++ . +...+..-
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG-----------~p~qQ~lGtT~GALifaiiv~-~~~~p~-------~-T~~~~iv~ 62 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGG-----------KPYQQTLGTTLGALIFAIIVF-LFVSPE-------L-TLTIFIVG 62 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCC-----------ChhHhhhhccHHHHHHHHHHh-eeecCc-------c-chhhHHHH
Confidence 456677777888777666555422 455544433333433333332 221211 1 12223333
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHhh-hhhHHHHHHHHHhcCCcCCcchh-hH---HHHHHHHHHHHHhhhhhhh
Q 027434 145 TLSGFLGLAISFTSMWFLHQTGATTYSLVGS-LNKIPLSVAGILLFKVPTSLENS-AS---IFFGLLAGVFFARAKMWER 219 (223)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~-l~~v~~~~~~~~~~~e~~~~~~~-~G---~~li~~g~~~~~~~~~~~~ 219 (223)
+++|.+=..=+.-.|.+.+..+...+..+.+ .+-+-+.++|++.|||=-+..+. +| .++++.|+++-++.++.+|
T Consensus 63 ~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk 142 (288)
T COG4975 63 FISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNK 142 (288)
T ss_pred HHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccc
Confidence 3333332222233344555444443333222 46788999999999997776554 34 4467778777666655333
No 98
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=85.85 E-value=2 Score=35.26 Aligned_cols=130 Identities=18% Similarity=0.226 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhccccccccCCCCccchHHHHH
Q 027434 65 GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVM 144 (223)
Q Consensus 65 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (223)
|++.++.|+++++.+.+=.||.-. -|+.-.+.+.+........+..+..+. +.. +...
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~----------gDg~~fQw~~~~~i~~~g~~v~~~~~~-------p~f-----~p~a 58 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDT----------GDGFFFQWVMCSGIFLVGLVVNLILGF-------PPF-----YPWA 58 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccC----------CCcHHHHHHHHHHHHHHHHHHHHhcCC-------Ccc-----eeHH
Confidence 667788899999988887776521 244434434333222222222222221 111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHhhcch-hHHHHHhhhhhHHHHHHHHH-hcCCc---C--CcchhhHHHHHHHHHHHHHhhhh
Q 027434 145 TLSGFLGLAISFTSMWFLHQTGA-TTYSLVGSLNKIPLSVAGIL-LFKVP---T--SLENSASIFFGLLAGVFFARAKM 216 (223)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~s~-~~~si~~~l~~v~~~~~~~~-~~~e~---~--~~~~~~G~~li~~g~~~~~~~~~ 216 (223)
.+.|.+=..-+....-++|..+- .-..+.+..+-+..-..|-+ +||++ + .+.+++|.+++++|..++..-|.
T Consensus 59 mlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~ 137 (254)
T PF07857_consen 59 MLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKS 137 (254)
T ss_pred HhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecC
Confidence 22222211112222223444332 12233333444444444432 56532 2 47899999999999998865433
No 99
>PRK02237 hypothetical protein; Provisional
Probab=83.96 E-value=2.2 Score=30.08 Aligned_cols=47 Identities=11% Similarity=-0.068 Sum_probs=38.9
Q ss_pred HHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhh
Q 027434 169 TYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 215 (223)
Q Consensus 169 ~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~ 215 (223)
.++..+-+-.+.++++++.+-|++++...++|.+++++|+.+.-..+
T Consensus 61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 35556666678888999999999999999999999999987665444
No 100
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=82.99 E-value=2.1 Score=30.12 Aligned_cols=47 Identities=15% Similarity=0.034 Sum_probs=39.0
Q ss_pred HHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhh
Q 027434 170 YSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKM 216 (223)
Q Consensus 170 ~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 216 (223)
++..+-.-.+.++++++.+-+++++-..++|..+++.|+.+.-..+|
T Consensus 60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 45556666788999999999999999999999999999887655443
No 101
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=74.04 E-value=87 Score=30.17 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhh
Q 027434 10 VAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISG 54 (223)
Q Consensus 10 ~~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~ 54 (223)
++-+.++..++|+=.+.+++....+|.+...+.+.+-.++|.+..
T Consensus 10 lgRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 10 LGRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred HhHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 356678888999999999999887787666677777777787655
No 102
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=73.67 E-value=3.5 Score=28.93 Aligned_cols=29 Identities=14% Similarity=0.053 Sum_probs=24.5
Q ss_pred HHHHHHhcCCcCCcchhhHHHHHHHHHHH
Q 027434 182 SVAGILLFKVPTSLENSASIFFGLLAGVF 210 (223)
Q Consensus 182 ~~~~~~~~~e~~~~~~~~G~~li~~g~~~ 210 (223)
+.++.++++|++++.+..|.++++.++++
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 45678899999999999999998777654
No 103
>PRK02237 hypothetical protein; Provisional
Probab=71.87 E-value=9.1 Score=27.01 Aligned_cols=35 Identities=9% Similarity=-0.033 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcc
Q 027434 22 VITAVGEMYLFNKRHDNRVWAALFLMIISAISGGI 56 (223)
Q Consensus 22 i~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~ 56 (223)
+...+-.+.+-|+||++.++.+..++.+|+.++.+
T Consensus 71 ~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 71 AGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 34456677888899999999999999999987644
No 104
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=71.86 E-value=6.1 Score=33.57 Aligned_cols=56 Identities=13% Similarity=-0.018 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcc
Q 027434 141 WLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLE 196 (223)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~ 196 (223)
|..++-.+++.+.-.......+++++...+.++-.++|+++.+++.++.+|+.+..
T Consensus 83 ~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~ 138 (316)
T KOG1441|consen 83 LRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSM 138 (316)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcce
Confidence 44455445554444444445789999999999999999999999999999988763
No 105
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=70.45 E-value=9 Score=26.96 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc
Q 027434 21 NVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT 57 (223)
Q Consensus 21 pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~ 57 (223)
.+...+-.+.+-|+||++.++++..++.+|+.++.+.
T Consensus 68 I~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 68 IVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred HHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 4455667778889999999999999999999887543
No 106
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.37 E-value=37 Score=23.58 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHH-H--hhcchhHHHH--HhhhhhHHHH----HHHHHhcCCcCCcchhhHHHHHHHHHHHH
Q 027434 148 GFLGLAISFTSMWF-L--HQTGATTYSL--VGSLNKIPLS----VAGILLFKVPTSLENSASIFFGLLAGVFF 211 (223)
Q Consensus 148 ~~~~~~~~~~~~~~-~--~~~s~~~~si--~~~l~~v~~~----~~~~~~~~e~~~~~~~~G~~li~~g~~~~ 211 (223)
.+.+..+++..|.. + .|++-+..|. .-.++.+.+. -++.+.++|++.+.++.|..++..++++.
T Consensus 41 i~~SWGIA~fEY~LqvPaNRiG~~v~s~~QLK~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 41 ILASWGIAFFEYLLQVPANRIGHQVYSAAQLKTMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHhhHHHHHHHHhCccchhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 34556666655432 1 2444333332 2334444443 46888899999999999999988777653
No 107
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=66.12 E-value=12 Score=27.55 Aligned_cols=49 Identities=18% Similarity=0.189 Sum_probs=34.9
Q ss_pred ccccchhHHHHHHHH-HHHHHHHHHHH----HhCcccChhHHHHHHHHHHhhhh
Q 027434 5 LKYINVAMVTVLKNV-TNVITAVGEMY----LFNKRHDNRVWAALFLMIISAIS 53 (223)
Q Consensus 5 l~~~~~~~~~~l~~~-~pi~~~i~~~~----~~~e~~s~~~~~~l~l~~~Gv~~ 53 (223)
.+.+.++..+.+.-+ +-+..+++|.+ ..|+++++++.+++.++++|+.+
T Consensus 85 vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 85 VPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 344555555554444 45557777876 46789999999999999999864
No 108
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=66.11 E-value=40 Score=23.13 Aligned_cols=61 Identities=15% Similarity=0.044 Sum_probs=30.5
Q ss_pred HHHhhcchhHHHHHhhhhhHHHHHHHHH---hcCCc-CCcchhhHHHHHHHHHHHHHhhhhhhhh
Q 027434 160 WFLHQTGATTYSLVGSLNKIPLSVAGIL---LFKVP-TSLENSASIFFGLLAGVFFARAKMWERS 220 (223)
Q Consensus 160 ~~~~~~s~~~~si~~~l~~v~~~~~~~~---~~~e~-~~~~~~~G~~li~~g~~~~~~~~~~~~~ 220 (223)
.++|++.-.....+-.+.-+..+++|.+ +-++. +-...|.|.+.-+++..++....+|.+|
T Consensus 23 q~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~~~ 87 (93)
T PF06946_consen 23 QAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRSKK 87 (93)
T ss_pred HHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhhhh
Confidence 4566655322222222333344444433 22322 2233478888888887777665554443
No 109
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=65.68 E-value=9.9 Score=26.71 Aligned_cols=32 Identities=6% Similarity=-0.053 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCcccChhHHHHHHHHHHhhhhh
Q 027434 23 ITAVGEMYLFNKRHDNRVWAALFLMIISAISG 54 (223)
Q Consensus 23 ~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~ 54 (223)
....++.+++||++++....|-+.+..++.+.
T Consensus 75 vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 75 VFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred eeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 34567788999999999999999888877654
No 110
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=63.99 E-value=13 Score=25.97 Aligned_cols=46 Identities=9% Similarity=-0.107 Sum_probs=37.5
Q ss_pred HHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhh
Q 027434 170 YSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 215 (223)
Q Consensus 170 ~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~ 215 (223)
++-.+-+-.+.++.+.+++-+.+++-+-++|.+++++|+.+....+
T Consensus 61 YAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 61 YAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 4555666678889999999999999999999999999976654443
No 111
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=60.24 E-value=11 Score=21.76 Aligned_cols=35 Identities=14% Similarity=0.029 Sum_probs=23.0
Q ss_pred cCCcCCcchhhHHHH-HHHHHHHHHhhhhhhhhcCC
Q 027434 189 FKVPTSLENSASIFF-GLLAGVFFARAKMWERSQSG 223 (223)
Q Consensus 189 ~~e~~~~~~~~G~~l-i~~g~~~~~~~~~~~~~~~~ 223 (223)
|+.+.++...+.++. +..+++++.+..+|-++++|
T Consensus 7 F~s~vGL~Sl~vI~~~igm~~~~~~~F~~k~~~~~~ 42 (42)
T PF11346_consen 7 FGSDVGLMSLIVIVFTIGMGVFFIRYFIRKMKEDEK 42 (42)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence 677777777777776 34456666667666555543
No 112
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.81 E-value=1.2e+02 Score=25.81 Aligned_cols=129 Identities=19% Similarity=0.263 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCC-chhHHHHHhhhHHHHHHHHHHHhccccccccCCC--CccchHHH
Q 027434 66 YAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLN-EFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPL--LRLPSFWL 142 (223)
Q Consensus 66 ~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 142 (223)
..-++.-+++..+-.+..|..+.+. +.+ ...++.+|++.+.......-.. + .-+++. +.++..|+
T Consensus 14 l~sa~~Y~~sS~lm~vvNK~vls~y-------~f~~~l~l~~~Q~l~s~~~v~~lk~~-~----lv~~~~l~~~~~kk~~ 81 (314)
T KOG1444|consen 14 LLSALFYCLSSILMTVVNKIVLSSY-------NFPMGLLLMLLQSLASVLVVLVLKRL-G----LVNFRPLDLRTAKKWF 81 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHHHHHHHHHHh-c----eeecCCcChHHHHHHc
Confidence 4444555555556667777776643 333 3444557877666655544322 1 111111 22222232
Q ss_pred --HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHH
Q 027434 143 --VMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFF 211 (223)
Q Consensus 143 --~~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~ 211 (223)
.+++.+- -++....+|+.+--...+.-++.++.+.+....+++.+++...|.......+|...+
T Consensus 82 P~~~lf~~~-----i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~ 147 (314)
T KOG1444|consen 82 PVSLLFVGM-----LFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAA 147 (314)
T ss_pred cHHHHHHHH-----HHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhh
Confidence 2222111 223335678999999999999999999999999999999999999998888776543
No 113
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=56.66 E-value=37 Score=28.52 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHH
Q 027434 144 MTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA 212 (223)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~ 212 (223)
-.++=++|+.+-|. .+..++++...+.---..+++.+++..+++.+++..||.|+..+..|.....
T Consensus 92 Pal~Di~gsslm~v---gL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg 157 (372)
T KOG3912|consen 92 PALCDIAGSSLMYV---GLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVG 157 (372)
T ss_pred hHHHHHhhhHHHHH---HHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheee
Confidence 34445555444333 4566777777666656678888999999999999999999999999977543
No 114
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=55.73 E-value=37 Score=25.34 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=9.8
Q ss_pred HHHhcCCcCCcchhhHHHHHHHHHH
Q 027434 185 GILLFKVPTSLENSASIFFGLLAGV 209 (223)
Q Consensus 185 ~~~~~~e~~~~~~~~G~~li~~g~~ 209 (223)
..++++|.+ ..+|+++..+..+
T Consensus 97 ~~L~~~e~~---~~~~~~lg~~l~f 118 (150)
T COG3086 97 QYLFFSELI---VIFGAFLGLALGF 118 (150)
T ss_pred HHHhhhhHH---HHHHHHHHHHHHH
Confidence 444455554 3444444333333
No 115
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=52.14 E-value=3.1 Score=34.24 Aligned_cols=68 Identities=13% Similarity=0.145 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHH
Q 027434 144 MTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFF 211 (223)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~ 211 (223)
.++.++.-.--+|....+.++++-+....+.+-..+...+++|++++.+--+.++.|.++++.|+.+.
T Consensus 81 Yilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~Gvvmv 148 (336)
T KOG2766|consen 81 YILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMV 148 (336)
T ss_pred hhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEE
Confidence 34445554444555545678899999999999999999999999999999999999999999997653
No 116
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.91 E-value=41 Score=23.39 Aligned_cols=30 Identities=7% Similarity=-0.035 Sum_probs=26.0
Q ss_pred HHHHHHHhCcccChhHHHHHHHHHHhhhhh
Q 027434 25 AVGEMYLFNKRHDNRVWAALFLMIISAISG 54 (223)
Q Consensus 25 ~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~ 54 (223)
..++.+.+||+.++..+.+..++..|+.++
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 457888999999999999999998888765
No 117
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.65 E-value=10 Score=31.67 Aligned_cols=49 Identities=20% Similarity=0.158 Sum_probs=41.5
Q ss_pred HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHH
Q 027434 160 WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAG 208 (223)
Q Consensus 160 ~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~ 208 (223)
+|+|+++..-+-+--.+..++++++++++++++-+..-..++.+++.|.
T Consensus 121 lcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF 169 (347)
T KOG1442|consen 121 LCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGF 169 (347)
T ss_pred eehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehh
Confidence 5788888877777777889999999999999999988888888877764
No 118
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=48.60 E-value=28 Score=25.33 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=18.5
Q ss_pred HHHHHhhhhhHHHHHHHHHhcCCcC---CcchhhHHHHHHHHHHHH
Q 027434 169 TYSLVGSLNKIPLSVAGILLFKVPT---SLENSASIFFGLLAGVFF 211 (223)
Q Consensus 169 ~~si~~~l~~v~~~~~~~~~~~e~~---~~~~~~G~~li~~g~~~~ 211 (223)
..+.+.++-|++..+++.++-. .+ +....++.++.+...+++
T Consensus 69 ~aa~l~Y~lPll~li~g~~l~~-~~~~~e~~~~l~~l~~l~~~~~~ 113 (135)
T PF04246_consen 69 KAAFLVYLLPLLALIAGAVLGS-YLGGSELWAILGGLLGLALGFLI 113 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555544331 11 334444444444444433
No 119
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=48.07 E-value=30 Score=24.27 Aligned_cols=37 Identities=8% Similarity=-0.070 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc
Q 027434 21 NVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT 57 (223)
Q Consensus 21 pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~ 57 (223)
....++-....-|.||++-++.+..++.+|+.++...
T Consensus 69 I~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 69 IAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred HHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 3445566677788899999999999999998776543
No 120
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=46.53 E-value=1.8e+02 Score=24.51 Aligned_cols=70 Identities=7% Similarity=0.031 Sum_probs=34.2
Q ss_pred HHHHHHHHhhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHH
Q 027434 42 AALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVI 121 (223)
Q Consensus 42 ~~l~l~~~Gv~~~~~~d~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (223)
.++++..+|......-....|..-..+++.+.+...+|.. .||.. .+.........+.|.+.....
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~~~~~~~~Y~~-~KR~t-------------~~~~~vlg~~~a~~~l~gw~A 161 (294)
T PRK12873 96 LLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALPPILIYPS-AKRWF-------------AYPQAILALCWGFAVLIPWAA 161 (294)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH-HHhcc-------------ccchHHHHHHHHhHHHHHHHH
Confidence 3444444554443222211344556666666666666775 66652 222333333445566655555
Q ss_pred Hhcc
Q 027434 122 VFNE 125 (223)
Q Consensus 122 ~~~~ 125 (223)
..|+
T Consensus 162 v~g~ 165 (294)
T PRK12873 162 AEGS 165 (294)
T ss_pred HhCC
Confidence 5544
No 121
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=45.68 E-value=29 Score=19.54 Aligned_cols=24 Identities=13% Similarity=0.146 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhc
Q 027434 198 SASIFFGLLAGVFFARAKMWERSQ 221 (223)
Q Consensus 198 ~~G~~li~~g~~~~~~~~~~~~~~ 221 (223)
.+|++++....+.|.-..+|.+.+
T Consensus 13 ~vg~~iiii~~~~YaCcykk~~~~ 36 (38)
T PF02439_consen 13 VVGMAIIIICMFYYACCYKKHRRQ 36 (38)
T ss_pred HHHHHHHHHHHHHHHHHHcccccc
Confidence 356777777777777665555433
No 122
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=44.65 E-value=36 Score=27.61 Aligned_cols=34 Identities=6% Similarity=0.132 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHH
Q 027434 11 AMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAAL 44 (223)
Q Consensus 11 ~~~~~l~~~~pi~~~i~~~~~~~e~~s~~~~~~l 44 (223)
.++.++-++--...++-+.++++++.++.++.++
T Consensus 251 TtySMvGALNKlp~alaGlvffdap~nf~si~si 284 (309)
T COG5070 251 TTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSI 284 (309)
T ss_pred hHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHH
Confidence 3333333333333333333333333333333333
No 123
>PF15102 TMEM154: TMEM154 protein family
Probab=43.17 E-value=11 Score=28.08 Aligned_cols=24 Identities=13% Similarity=-0.061 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhc
Q 027434 198 SASIFFGLLAGVFFARAKMWERSQ 221 (223)
Q Consensus 198 ~~G~~li~~g~~~~~~~~~~~~~~ 221 (223)
++++++.+..++++.+.|||+.|+
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccCC
Confidence 344455555666666666665555
No 124
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=41.24 E-value=31 Score=23.24 Aligned_cols=27 Identities=7% Similarity=-0.150 Sum_probs=21.0
Q ss_pred CcCCcchhhHHHHHHHHHHHHHhhhhh
Q 027434 191 VPTSLENSASIFFGLLAGVFFARAKMW 217 (223)
Q Consensus 191 e~~~~~~~~G~~li~~g~~~~~~~~~~ 217 (223)
-.+++.+++|+.+++.|..+|..++.|
T Consensus 3 ~~~~~~~iLgi~l~~~~~~Ly~lr~~~ 29 (84)
T PF07444_consen 3 FGFGPSYILGIILILGGLALYFLRFFR 29 (84)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 356788999999999998888654444
No 125
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=40.37 E-value=80 Score=23.76 Aligned_cols=17 Identities=24% Similarity=0.471 Sum_probs=6.8
Q ss_pred hhhHHHHHHHHHHHHHh
Q 027434 197 NSASIFFGLLAGVFFAR 213 (223)
Q Consensus 197 ~~~G~~li~~g~~~~~~ 213 (223)
...|.++.+...+++.+
T Consensus 106 ~~~~~~~g~~~g~~~~r 122 (154)
T PRK10862 106 ALCGALLGGVGGFLLAR 122 (154)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444443333344433
No 126
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=40.29 E-value=25 Score=20.80 Aligned_cols=18 Identities=11% Similarity=0.030 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhhhhhhh
Q 027434 203 FGLLAGVFFARAKMWERS 220 (223)
Q Consensus 203 li~~g~~~~~~~~~~~~~ 220 (223)
+++.|+.++.+.+++|++
T Consensus 20 ~~F~gi~~w~~~~~~k~~ 37 (49)
T PF05545_consen 20 VFFIGIVIWAYRPRNKKR 37 (49)
T ss_pred HHHHHHHHHHHcccchhh
Confidence 456677888876665443
No 127
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=39.20 E-value=16 Score=30.49 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=40.0
Q ss_pred HHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhhhhhh
Q 027434 172 LVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERS 220 (223)
Q Consensus 172 i~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~ 220 (223)
+.-+-.++.++..|+++.|.+-+..|+...+++-+|+++.+..+.++-+
T Consensus 96 IfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~ 144 (330)
T KOG1583|consen 96 IFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGR 144 (330)
T ss_pred EEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchh
Confidence 3444456778899999999999999999999999999988776665433
No 128
>PF15055 DUF4536: Domain of unknown function (DUF4536)
Probab=37.34 E-value=23 Score=20.99 Aligned_cols=22 Identities=9% Similarity=-0.059 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHhhhhhhhh
Q 027434 199 ASIFFGLLAGVFFARAKMWERS 220 (223)
Q Consensus 199 ~G~~li~~g~~~~~~~~~~~~~ 220 (223)
-|..++-+|.++|.+.|++.|.
T Consensus 9 SG~GLig~G~Yv~~~ark~~k~ 30 (47)
T PF15055_consen 9 SGGGLIGAGAYVYAQARKRMKP 30 (47)
T ss_pred cccchHHHHHHHHHHHhhcccC
Confidence 4566777888999888776543
No 129
>COG2209 NqrE Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE [Energy production and conversion]
Probab=35.70 E-value=1e+02 Score=23.44 Aligned_cols=83 Identities=12% Similarity=0.029 Sum_probs=36.8
Q ss_pred HHHHHHHHhCcccChhHHHHHHH--------HHHhhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 027434 24 TAVGEMYLFNKRHDNRVWAALFL--------MIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTK 95 (223)
Q Consensus 24 ~~i~~~~~~~e~~s~~~~~~l~l--------~~~Gv~~~~~~d~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~ 95 (223)
+=+++.+.-|-.|+....+++.+ ++.|+.+....|..+. ....+.+.+.+.|.+..+...-..++.+.+..
T Consensus 91 vQILEm~Ldk~~p~Ly~aLGifLPLitvnCAI~ggv~FmvqR~Y~f~-es~vyg~GsG~gW~LAIvalAgirEKmkYsdv 169 (198)
T COG2209 91 VQILEMLLDKFSPSLYNALGIFLPLITVNCAIFGGVSFMVQRDYNFA-ESVVYGFGSGLGWMLAIVALAGIREKMKYSDV 169 (198)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHhcceeEEEeecCCCc-hhhheecCCchHHHHHHHHHHhHHHHhhcccC
Confidence 44455444444455555555543 2334444444454443 34444445555555544433333222222223
Q ss_pred cCCCCchhHHHH
Q 027434 96 SGNLNEFSMVLL 107 (223)
Q Consensus 96 ~~~~~~~~~~~~ 107 (223)
++.+...++.+.
T Consensus 170 P~gL~GlGItFi 181 (198)
T COG2209 170 PKGLQGLGITFI 181 (198)
T ss_pred ccccccCcchhh
Confidence 444555555544
No 130
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=35.50 E-value=20 Score=21.30 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhhhhhhhh
Q 027434 201 IFFGLLAGVFFARAKMWERS 220 (223)
Q Consensus 201 ~~li~~g~~~~~~~~~~~~~ 220 (223)
.+++++|+.++.+.+++|++
T Consensus 19 ~~~~Figiv~wa~~p~~k~~ 38 (48)
T cd01324 19 LALFFLGVVVWAFRPGRKKA 38 (48)
T ss_pred HHHHHHHHHHHHhCCCcchh
Confidence 34668898999888776654
No 131
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=35.32 E-value=33 Score=28.56 Aligned_cols=29 Identities=10% Similarity=-0.085 Sum_probs=20.9
Q ss_pred CCcchhhHHHHHHHHHHHHHhhhhhhhhc
Q 027434 193 TSLENSASIFFGLLAGVFFARAKMWERSQ 221 (223)
Q Consensus 193 ~~~~~~~G~~li~~g~~~~~~~~~~~~~~ 221 (223)
+|..|++...+++.|+.+..+.++|++|.
T Consensus 246 lt~~Q~~sl~~i~~g~~~~~~~~~~~~~~ 274 (278)
T TIGR00544 246 ISMGQILSLLMIAGILIIMLLAYKLSDKW 274 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 68899999999899987665544444443
No 132
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=34.49 E-value=1.5e+02 Score=24.14 Aligned_cols=19 Identities=11% Similarity=-0.152 Sum_probs=14.7
Q ss_pred cCCcchhhHHHHHHHHHHH
Q 027434 192 PTSLENSASIFFGLLAGVF 210 (223)
Q Consensus 192 ~~~~~~~~G~~li~~g~~~ 210 (223)
.++.+.|++-++++.|.++
T Consensus 218 y~n~q~wLwwi~~vlG~ll 236 (262)
T KOG4812|consen 218 YFNGQYWLWWIFLVLGLLL 236 (262)
T ss_pred ccccchHHHHHHHHHHHHH
Confidence 4566789998888888765
No 133
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=33.70 E-value=31 Score=18.34 Aligned_cols=12 Identities=17% Similarity=-0.122 Sum_probs=6.5
Q ss_pred CcchhhHHHHHH
Q 027434 194 SLENSASIFFGL 205 (223)
Q Consensus 194 ~~~~~~G~~li~ 205 (223)
+...++|..++.
T Consensus 11 ~~~~~~G~~l~~ 22 (34)
T TIGR01167 11 SLLLLLGLLLLG 22 (34)
T ss_pred HHHHHHHHHHHH
Confidence 455666774433
No 134
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=31.25 E-value=2.4e+02 Score=21.63 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=8.3
Q ss_pred hhhHHHHHHHHHHHHH
Q 027434 63 AVGYAWQIINCFLTAS 78 (223)
Q Consensus 63 ~~G~~~~l~a~~~~a~ 78 (223)
..|.++-++..=|..+
T Consensus 102 ~LGIfLPLITTNCaVL 117 (193)
T COG4657 102 LLGIFLPLITTNCAVL 117 (193)
T ss_pred HHHHhhhhHhhchHHH
Confidence 3566666664444433
No 135
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=30.99 E-value=63 Score=20.78 Aligned_cols=8 Identities=13% Similarity=-0.322 Sum_probs=3.1
Q ss_pred CcCCcchh
Q 027434 191 VPTSLENS 198 (223)
Q Consensus 191 e~~~~~~~ 198 (223)
+.++..||
T Consensus 26 d~~sp~qW 33 (68)
T PF04971_consen 26 DQFSPSQW 33 (68)
T ss_pred hccCcccc
Confidence 33443333
No 136
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=30.72 E-value=41 Score=27.83 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=18.0
Q ss_pred CCcchhhHHHHHHHHHHHHHhhh
Q 027434 193 TSLENSASIFFGLLAGVFFARAK 215 (223)
Q Consensus 193 ~~~~~~~G~~li~~g~~~~~~~~ 215 (223)
+|..|+++..+++.|+.+..+++
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~~~ 257 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIYRR 257 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999898987664433
No 137
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=28.84 E-value=53 Score=27.16 Aligned_cols=24 Identities=21% Similarity=0.095 Sum_probs=19.0
Q ss_pred CCcchhhHHHHHHHHHHHHHhhhh
Q 027434 193 TSLENSASIFFGLLAGVFFARAKM 216 (223)
Q Consensus 193 ~~~~~~~G~~li~~g~~~~~~~~~ 216 (223)
+|..|+++..+++.|+.+.-+.++
T Consensus 237 ls~~Q~isl~~~~~gi~~~~~~~~ 260 (269)
T PRK00052 237 LTMGQILSIPMILLGIILLIWAYR 260 (269)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHh
Confidence 588999999999999877655433
No 138
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=28.71 E-value=45 Score=18.58 Aligned_cols=20 Identities=15% Similarity=-0.067 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhhhhhhhcC
Q 027434 203 FGLLAGVFFARAKMWERSQS 222 (223)
Q Consensus 203 li~~g~~~~~~~~~~~~~~~ 222 (223)
++++|.+...+...|+.+|-
T Consensus 16 vtl~Glfv~Ay~QY~Rg~ql 35 (37)
T PF02529_consen 16 VTLAGLFVAAYLQYRRGNQL 35 (37)
T ss_dssp HHHHHHHHHHHHHHCS--TT
T ss_pred HHHHHHHHHHHHHHhccccc
Confidence 46778887788777776653
No 139
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=28.26 E-value=62 Score=20.72 Aligned_cols=22 Identities=5% Similarity=0.016 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHHhhhhhh
Q 027434 197 NSASIFFGLLAGVFFARAKMWE 218 (223)
Q Consensus 197 ~~~G~~li~~g~~~~~~~~~~~ 218 (223)
-.+++.+++.|.++|..-++++
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~ 27 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKK 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 3567788888988887655543
No 140
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=28.20 E-value=2.5e+02 Score=20.73 Aligned_cols=71 Identities=14% Similarity=0.302 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHH-HHHHHHHHHhhhhh
Q 027434 140 FWLVMTLSGFLGLAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFF-GLLAGVFFARAKMW 217 (223)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~l-i~~g~~~~~~~~~~ 217 (223)
++.......+.+....|..- +..||.+.++.+..+ .....+.|.+++. + +|..+ -+.|.++.+..++|
T Consensus 32 ~l~~~~~l~~l~~~~d~~~~~~~ak~~G~s~~~~~g---a~iG~IvG~f~~~-p------~G~iiG~~~Ga~l~El~~~~ 101 (140)
T PF04306_consen 32 FLAILAVLALLGEVLDYLAGAYGAKRFGASRWGIWG---AIIGGIVGFFVLP-P------LGLIIGPFLGAFLGELLRGK 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH---HHHHHHHHHHHhh-H------HHHHHHHHHHHHHHHHHhCC
Confidence 34455556667777777663 567888888888765 4567777777764 2 25554 45566666665555
Q ss_pred hhh
Q 027434 218 ERS 220 (223)
Q Consensus 218 ~~~ 220 (223)
+.+
T Consensus 102 ~~~ 104 (140)
T PF04306_consen 102 DFR 104 (140)
T ss_pred CHH
Confidence 443
No 141
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=28.12 E-value=3.6e+02 Score=24.39 Aligned_cols=25 Identities=20% Similarity=0.075 Sum_probs=19.4
Q ss_pred CCcchhhHHHHHHHHHHHHHhhhhh
Q 027434 193 TSLENSASIFFGLLAGVFFARAKMW 217 (223)
Q Consensus 193 ~~~~~~~G~~li~~g~~~~~~~~~~ 217 (223)
++..|++.+.++++|+.++.+.+++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~~ 278 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPKG 278 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7889999999999998776554443
No 142
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=27.02 E-value=1.7e+02 Score=20.89 Aligned_cols=22 Identities=23% Similarity=0.058 Sum_probs=18.3
Q ss_pred cccChhHHHHHHHHHHhhhhhc
Q 027434 34 KRHDNRVWAALFLMIISAISGG 55 (223)
Q Consensus 34 e~~s~~~~~~l~l~~~Gv~~~~ 55 (223)
.|+++.+-.++.++++|+++..
T Consensus 6 ~KiN~~R~~al~lif~g~~vmy 27 (114)
T PF11023_consen 6 SKINKIRTFALSLIFIGMIVMY 27 (114)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4778888999999999998754
No 143
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=25.40 E-value=88 Score=17.37 Aligned_cols=19 Identities=16% Similarity=-0.048 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhhhhhhhc
Q 027434 203 FGLLAGVFFARAKMWERSQ 221 (223)
Q Consensus 203 li~~g~~~~~~~~~~~~~~ 221 (223)
++++|.+.-.+..+|+.+|
T Consensus 16 iTl~GlfvaAylQYrRg~~ 34 (37)
T PRK00665 16 VTLAGLFVAAWNQYKRGNQ 34 (37)
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 4677877777777776655
No 144
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=25.37 E-value=3.4e+02 Score=23.22 Aligned_cols=66 Identities=15% Similarity=0.101 Sum_probs=33.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCchhHHHHHhhhHHHHHHHHHHHhcc
Q 027434 60 SFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNE 125 (223)
Q Consensus 60 ~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (223)
..|..|-+..+++++..+...--..+-..+.....++...+...-..+..+...|+.++.....|-
T Consensus 154 ~~d~LGrl~~ii~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~li~~Pl~li~la~~GY 219 (340)
T PF12794_consen 154 ARDVLGRLAFIILLLLLAVFLWRLLRPGWGLYQPKPDSWIHRLRYLWWPLLILAPLALIVLALLGY 219 (340)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHccccccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 456688777776666655543322221111111011122234445556677778887777666554
No 145
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=24.43 E-value=3.3e+02 Score=22.27 Aligned_cols=90 Identities=19% Similarity=0.143 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc-----cccc-ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 027434 22 VITAVGEMYLFNKRHDNRVWAALFLMIISAISGG-----ITDL-SFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTK 95 (223)
Q Consensus 22 i~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~-----~~d~-~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~ 95 (223)
+.+.++-+.--|+| +......+.+++.|+.+.. .++. .....|...+.++-+.+|.=....|+..|+ |
T Consensus 81 ~Yi~~f~~ya~~k~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIkt-----k 154 (243)
T KOG1623|consen 81 VYISIFLYYAPKKK-TVKIVLALVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKT-----K 154 (243)
T ss_pred HHHHHHheecCchh-eeEeeehHHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheec-----C
Confidence 33333333333444 3344555666666665432 2222 255799999999999999988889988774 2
Q ss_pred cCCCCchhHHHHHhhhHHHHHH
Q 027434 96 SGNLNEFSMVLLNNSLSLPLGV 117 (223)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ 117 (223)
+.+.-|+.+.+...+.+...++
T Consensus 155 SvE~mPf~Ls~a~fl~a~~W~l 176 (243)
T KOG1623|consen 155 SVEYMPFPLSFALFLVAVQWLL 176 (243)
T ss_pred ceeeechHHHHHHHHHHHHHHH
Confidence 3344556665555444444433
No 146
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=24.21 E-value=99 Score=24.32 Aligned_cols=45 Identities=9% Similarity=0.011 Sum_probs=31.9
Q ss_pred HHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhh
Q 027434 172 LVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKM 216 (223)
Q Consensus 172 i~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 216 (223)
..-+.+++...+.++..++++.+..+++..++...|+......+.
T Consensus 9 ~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~ 53 (222)
T TIGR00803 9 IFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDD 53 (222)
T ss_pred HHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHH
Confidence 344556777777788888888888888888887777775544433
No 147
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=24.20 E-value=96 Score=17.21 Aligned_cols=19 Identities=16% Similarity=-0.024 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhhhhhhhc
Q 027434 203 FGLLAGVFFARAKMWERSQ 221 (223)
Q Consensus 203 li~~g~~~~~~~~~~~~~~ 221 (223)
++++|.+.-.+..+|+.+|
T Consensus 16 vTl~GlfvaAylQYrRg~~ 34 (37)
T CHL00008 16 ITLAGLFVTAYLQYRRGDQ 34 (37)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 4677877777777776655
No 148
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=24.16 E-value=44 Score=24.29 Aligned_cols=15 Identities=20% Similarity=0.569 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHH
Q 027434 143 VMTLSGFLGLAISFT 157 (223)
Q Consensus 143 ~~~~~~~~~~~~~~~ 157 (223)
.+++.|+..+.++|+
T Consensus 58 vili~GvvvT~vays 72 (129)
T PF15099_consen 58 VILIAGVVVTAVAYS 72 (129)
T ss_pred HHHHHhhHhheeeEe
Confidence 455556666655554
No 149
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=24.14 E-value=2e+02 Score=21.53 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 027434 10 VAMVTVLKNVTNVITAVGEMYL 31 (223)
Q Consensus 10 ~~~~~~l~~~~pi~~~i~~~~~ 31 (223)
+=.+..+.|..|++.++++++.
T Consensus 74 lL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 74 LLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777888877777644
No 150
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=23.39 E-value=43 Score=19.13 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhhhh
Q 027434 200 SIFFGLLAGVFFARAKM 216 (223)
Q Consensus 200 G~~li~~g~~~~~~~~~ 216 (223)
|..+++.+.+++-+.++
T Consensus 22 ~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 22 GVIIIVLGAFLFFWYRR 38 (40)
T ss_pred HHHHHHHHHHhheEEec
Confidence 44455566666644443
No 151
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=23.06 E-value=89 Score=18.24 Aligned_cols=7 Identities=0% Similarity=0.183 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 027434 206 LAGVFFA 212 (223)
Q Consensus 206 ~g~~~~~ 212 (223)
.|..+|.
T Consensus 21 iGl~IyQ 27 (49)
T PF11044_consen 21 IGLSIYQ 27 (49)
T ss_pred HHHHHHH
Confidence 3444454
No 152
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=22.62 E-value=4.4e+02 Score=21.70 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=11.2
Q ss_pred cchhhHHHHHHHHHHHHH
Q 027434 195 LENSASIFFGLLAGVFFA 212 (223)
Q Consensus 195 ~~~~~G~~li~~g~~~~~ 212 (223)
..-+.-..++++|..||.
T Consensus 69 ~~~~~~~~l~~~Gglwy~ 86 (284)
T PF12805_consen 69 PEALEHALLFLAGGLWYL 86 (284)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344555666777777764
No 153
>PRK02935 hypothetical protein; Provisional
Probab=22.19 E-value=1.1e+02 Score=21.53 Aligned_cols=23 Identities=22% Similarity=0.043 Sum_probs=18.3
Q ss_pred CcccChhHHHHHHHHHHhhhhhc
Q 027434 33 NKRHDNRVWAALFLMIISAISGG 55 (223)
Q Consensus 33 ~e~~s~~~~~~l~l~~~Gv~~~~ 55 (223)
..|+++.+-.++.++++|.++..
T Consensus 6 ssKINkiRt~aL~lvfiG~~vMy 28 (110)
T PRK02935 6 SNKINKIRTFALSLVFIGFIVMY 28 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888899999999988753
No 154
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=21.91 E-value=3.9e+02 Score=20.77 Aligned_cols=36 Identities=11% Similarity=0.272 Sum_probs=23.7
Q ss_pred HHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHH
Q 027434 170 YSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGL 205 (223)
Q Consensus 170 ~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~ 205 (223)
.++....-.+.-++.-+.++|-++|...+.|...++
T Consensus 59 ~aii~l~~dv~i~l~~~~~~~~~l~l~~iaall~~i 94 (189)
T PF02355_consen 59 AAIIALIHDVLITLGIFSLFGIELTLPSIAALLTII 94 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-EE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHH
Confidence 344444555666666677889999999999987744
No 155
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=21.45 E-value=78 Score=21.02 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhhhhhhhhc
Q 027434 203 FGLLAGVFFARAKMWERSQ 221 (223)
Q Consensus 203 li~~g~~~~~~~~~~~~~~ 221 (223)
+|+..++...+.++|++++
T Consensus 49 LIv~~vy~car~r~r~~~~ 67 (79)
T PF07213_consen 49 LIVLVVYYCARPRRRPTQE 67 (79)
T ss_pred HHHHHHHhhcccccCCccc
Confidence 4455566665544443333
No 156
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=21.34 E-value=4.1e+02 Score=20.82 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=23.8
Q ss_pred HHHHHhcCCcCCcchhhHHHH--HHHHHHHHHhhhh
Q 027434 183 VAGILLFKVPTSLENSASIFF--GLLAGVFFARAKM 216 (223)
Q Consensus 183 ~~~~~~~~e~~~~~~~~G~~l--i~~g~~~~~~~~~ 216 (223)
.+|..+|++..=+.+..|..+ .+.|.+..+++++
T Consensus 134 ~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~~~~ 169 (198)
T PRK06638 134 AIGILLFTDYLLPFELASVLLLVAMVGAIVLARRER 169 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 347777778777888888876 5567666666544
No 157
>PF11384 DUF3188: Protein of unknown function (DUF3188); InterPro: IPR021524 This bacterial family of proteins has no known function.
Probab=21.17 E-value=74 Score=19.02 Aligned_cols=19 Identities=21% Similarity=0.002 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHHHHHhhh
Q 027434 197 NSASIFFGLLAGVFFARAK 215 (223)
Q Consensus 197 ~~~G~~li~~g~~~~~~~~ 215 (223)
-.+|.++++.|.+...+++
T Consensus 29 ~~~Gi~Lii~g~v~r~~~r 47 (49)
T PF11384_consen 29 ILIGIGLIISGGVGRRRRR 47 (49)
T ss_pred HHHhHHHHhhhhhhhhhhc
Confidence 3456677666665544433
No 158
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=20.66 E-value=3.3e+02 Score=20.94 Aligned_cols=49 Identities=20% Similarity=0.360 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHH---HHHHHhcC--CcCCcch
Q 027434 148 GFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLS---VAGILLFK--VPTSLEN 197 (223)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~s~~~~si~~~l~~v~~~---~~~~~~~~--e~~~~~~ 197 (223)
-+.+...++.. ..+|++||+.+-..+..-|..++ ++|+..++ |.-++.|
T Consensus 79 lVIAv~VQf~E-m~v~KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~~~~~f~q 132 (193)
T COG4657 79 LVIAVVVQFTE-MVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNINEGHNFLQ 132 (193)
T ss_pred HHHHHHHHHHH-HHHHccCHHHHHHHHHhhhhHhhchHHHHHHHHHhhhhhhHHH
Confidence 34555556655 46899999999999998898876 45555664 5555444
No 159
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=20.59 E-value=2.6e+02 Score=18.31 Aligned_cols=35 Identities=11% Similarity=0.033 Sum_probs=19.0
Q ss_pred hcCCcCCcchhhHHHHHHHHHHHHHhhhhhhhhcC
Q 027434 188 LFKVPTSLENSASIFFGLLAGVFFARAKMWERSQS 222 (223)
Q Consensus 188 ~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~~ 222 (223)
.-|-.=++..++=-+..+..+++|...-.+++||+
T Consensus 40 ykGyt~~~~ii~iD~~Sl~aGf~~a~~m~~~~k~~ 74 (74)
T PF09964_consen 40 YKGYTHTWWIIFIDAVSLTAGFLYAKKMLKHKKKD 74 (74)
T ss_pred HhccccchHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 33433344444444556666677776666666554
No 160
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=20.26 E-value=3.7e+02 Score=19.89 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 027434 63 AVGYAWQIINCFLTASYSLTLRRV 86 (223)
Q Consensus 63 ~~G~~~~l~a~~~~a~~~v~~k~~ 86 (223)
..+.+..++++..|.-|....||.
T Consensus 120 i~~l~~~li~a~IwipYf~~S~RV 143 (149)
T PF10754_consen 120 IRELLRSLIAAAIWIPYFLRSKRV 143 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHh
Confidence 567888999999999999988887
Done!