Query 027434
Match_columns 223
No_of_seqs 108 out of 1145
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 16:28:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.8 1.6E-08 5.5E-13 74.0 6.8 69 148-216 36-106 (137)
2 3b5d_A Multidrug transporter E 98.5 6E-07 2.1E-11 63.2 7.9 68 148-215 36-105 (110)
3 3b5d_A Multidrug transporter E 98.3 9.3E-07 3.2E-11 62.2 4.8 57 2-58 48-105 (110)
4 2i68_A Protein EMRE; transmemb 98.1 1.1E-06 3.7E-11 64.2 2.7 56 2-57 48-104 (137)
5 2jwa_A Receptor tyrosine-prote 41.8 19 0.00063 20.3 2.2 16 207-222 28-43 (44)
6 3l1l_A Arginine/agmatine antip 30.8 78 0.0027 26.2 5.5 25 196-220 409-433 (445)
7 1vf5_G Protein PET G; photosyn 30.3 33 0.0011 18.3 1.9 25 197-221 9-34 (37)
8 1q90_G Cytochrome B6F complex 27.8 29 0.00099 18.5 1.4 24 199-222 11-35 (37)
9 3qrx_B Melittin; calcium-bindi 23.7 45 0.0015 16.0 1.5 10 210-219 16-25 (26)
10 2h3o_A MERF; membrane protein, 19.1 28 0.00096 21.0 0.3 54 168-221 4-59 (61)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.76 E-value=1.6e-08 Score=73.99 Aligned_cols=69 Identities=9% Similarity=0.001 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHH-HHHhhcchhHHHHH-hhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhhh
Q 027434 148 GFLGLAISFTSM-WFLHQTGATTYSLV-GSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKM 216 (223)
Q Consensus 148 ~~~~~~~~~~~~-~~~~~~s~~~~si~-~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 216 (223)
++++..++|..+ .++|+.++..+..+ ..+.|+.++++|+++|||++|+.+++|++++++|+++.+..++
T Consensus 36 ~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~ 106 (137)
T 2i68_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR 106 (137)
T ss_dssp HHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 445555565555 67899999988777 8999999999999999999999999999999999998876443
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.47 E-value=6e-07 Score=63.20 Aligned_cols=68 Identities=9% Similarity=0.009 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHH-HHHhhcchhHHHHH-hhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHHHHHHHhhh
Q 027434 148 GFLGLAISFTSM-WFLHQTGATTYSLV-GSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 215 (223)
Q Consensus 148 ~~~~~~~~~~~~-~~~~~~s~~~~si~-~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~ 215 (223)
++.+...++..+ .++|+.+...+..+ ..+.|+.+.++|+++|||++|..+++|+++++.|+...+..+
T Consensus 36 ~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344444455544 57899888888676 789999999999999999999999999999999999887654
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.26 E-value=9.3e-07 Score=62.23 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=52.5
Q ss_pred cccccccchhHHHHH-HHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccc
Q 027434 2 SLSLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD 58 (223)
Q Consensus 2 ~~al~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~d 58 (223)
+.++++.|++.+..+ +.+.|+++.+++.+++||++++.+++++.++++|++.....+
T Consensus 48 ~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 48 AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 468899999999888 899999999999999999999999999999999999876543
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.12 E-value=1.1e-06 Score=64.22 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=41.0
Q ss_pred cccccccchhHHHHH-HHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc
Q 027434 2 SLSLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT 57 (223)
Q Consensus 2 ~~al~~~~~~~~~~l-~~~~pi~~~i~~~~~~~e~~s~~~~~~l~l~~~Gv~~~~~~ 57 (223)
+++++++|++.+..+ .++.|+++.+++.++++|++++.+++|+.++++|+++....
T Consensus 48 ~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 48 AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 568899999988888 99999999999999999999999999999999999987543
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=41.79 E-value=19 Score=20.28 Aligned_cols=16 Identities=19% Similarity=-0.004 Sum_probs=6.7
Q ss_pred HHHHHHhhhhhhhhcC
Q 027434 207 AGVFFARAKMWERSQS 222 (223)
Q Consensus 207 g~~~~~~~~~~~~~~~ 222 (223)
+..+.-+.++|+++++
T Consensus 28 ~l~~~~~~RRR~~~~k 43 (44)
T 2jwa_A 28 GVVFGILIKRRQQKIR 43 (44)
T ss_dssp HHHHHHHHHHHCSCCC
T ss_pred HHHHHhheehhhhhcc
Confidence 3333444444444443
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=30.84 E-value=78 Score=26.23 Aligned_cols=25 Identities=12% Similarity=-0.070 Sum_probs=16.1
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhh
Q 027434 196 ENSASIFFGLLAGVFFARAKMWERS 220 (223)
Q Consensus 196 ~~~~G~~li~~g~~~~~~~~~~~~~ 220 (223)
..+.|....+.|..+|...++|+++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3455777778888887665554433
No 7
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=30.26 E-value=33 Score=18.31 Aligned_cols=25 Identities=8% Similarity=-0.083 Sum_probs=14.6
Q ss_pred hhhHHH-HHHHHHHHHHhhhhhhhhc
Q 027434 197 NSASIF-FGLLAGVFFARAKMWERSQ 221 (223)
Q Consensus 197 ~~~G~~-li~~g~~~~~~~~~~~~~~ 221 (223)
-.+|.. ++++|.+...+...|+.+|
T Consensus 9 IVlGlipvtl~GLfv~Ay~QyrRg~q 34 (37)
T 1vf5_G 9 LVLGLVFATLGGLFYAAYQQYKRPNE 34 (37)
T ss_dssp CHHHHHHHHHHHHTHHHHHHTCC---
T ss_pred HHHhhHHHHHHHHHHHHHHHHhhccc
Confidence 345544 4677877777777776665
No 8
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=27.76 E-value=29 Score=18.53 Aligned_cols=24 Identities=4% Similarity=-0.050 Sum_probs=12.5
Q ss_pred hHHH-HHHHHHHHHHhhhhhhhhcC
Q 027434 199 ASIF-FGLLAGVFFARAKMWERSQS 222 (223)
Q Consensus 199 ~G~~-li~~g~~~~~~~~~~~~~~~ 222 (223)
+|.. ++++|.+...+...|+.+|.
T Consensus 11 lGlipvtlaGLfv~Ay~QyrRg~~l 35 (37)
T 1q90_G 11 LGLVPVTIAGLFVTAYLQYLRGDLA 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----
T ss_pred HhhHHHHHHHHHHHHHHHHhhcccc
Confidence 3433 46777777777777776653
No 9
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=23.72 E-value=45 Score=16.00 Aligned_cols=10 Identities=10% Similarity=0.056 Sum_probs=5.1
Q ss_pred HHHhhhhhhh
Q 027434 210 FFARAKMWER 219 (223)
Q Consensus 210 ~~~~~~~~~~ 219 (223)
+.++-|+|++
T Consensus 16 liSWiK~kr~ 25 (26)
T 3qrx_B 16 LISWIKRKRQ 25 (26)
T ss_pred HHHHHHHHhc
Confidence 4555555543
No 10
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=19.14 E-value=28 Score=20.99 Aligned_cols=54 Identities=11% Similarity=0.121 Sum_probs=0.0
Q ss_pred hHHHHHhhhhhHHHHHHHHHhcCCcCCcch--hhHHHHHHHHHHHHHhhhhhhhhc
Q 027434 168 TTYSLVGSLNKIPLSVAGILLFKVPTSLEN--SASIFFGLLAGVFFARAKMWERSQ 221 (223)
Q Consensus 168 ~~~si~~~l~~v~~~~~~~~~~~e~~~~~~--~~G~~li~~g~~~~~~~~~~~~~~ 221 (223)
+..+-+....|+.++++|..=+...+++.. .+=..-.++|..+|...|+||+.+
T Consensus 4 av~aaLCC~tPvLvil~G~~Glsa~~~wLd~vl~P~l~~figl~~Y~~~r~~~~~~ 59 (61)
T 2h3o_A 4 TTLVALSSFTPVLVILLGVVGLSALTGYLDYVLLPALAIFIGLTIYAIQRKRQADA 59 (61)
T ss_dssp ------------CHHHHHHHHHHHHHHHSSSSCCTTHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Done!