Query 027434
Match_columns 223
No_of_seqs 108 out of 1145
Neff 9.0
Searched_HMMs 13730
Date Mon Mar 25 16:29:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027434.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027434hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 29.2 20 0.0014 16.1 2.0 22 199-220 3-25 (27)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 12.6 74 0.0054 14.4 2.2 12 26-37 17-28 (30)
3 d1iwga7 f.35.1.1 (A:7-37,A:331 10.8 2.3E+02 0.017 19.0 7.1 46 162-207 60-105 (199)
4 d3dtub2 f.17.2.1 (B:30-129) Ba 10.0 1E+02 0.0075 18.5 2.8 16 202-217 40-55 (100)
5 d1fftb2 f.17.2.1 (B:27-117) Cy 8.8 38 0.0028 20.4 0.3 14 204-217 31-44 (91)
6 d2h5na1 a.287.1.2 (A:1-132) Hy 8.3 1.7E+02 0.012 17.5 3.2 29 46-75 88-116 (132)
7 d1iwga8 f.35.1.1 (A:513-566,A: 6.1 4E+02 0.029 18.0 13.2 27 179-205 95-121 (222)
8 d1pv7a_ f.38.1.2 (A:) Lactose 5.6 4.5E+02 0.033 18.1 11.7 18 34-51 284-301 (417)
9 d3ehbb2 f.17.2.1 (B:1-107) Bac 5.3 2.1E+02 0.015 17.2 2.7 9 205-213 49-57 (107)
10 d2iuba2 f.17.3.1 (A:286-349) M 5.0 2E+02 0.014 15.4 2.1 13 205-217 51-63 (64)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=29.19 E-value=20 Score=16.14 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=11.8
Q ss_pred hHHHH-HHHHHHHHHhhhhhhhh
Q 027434 199 ASIFF-GLLAGVFFARAKMWERS 220 (223)
Q Consensus 199 ~G~~l-i~~g~~~~~~~~~~~~~ 220 (223)
.|.+. ++.|.+...+...|++.
T Consensus 3 lgli~~tl~glf~aayqqykrpn 25 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQYKRPN 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCC
T ss_pred eeehHHHHHHHHHHHHHHhcCCC
Confidence 45444 45555555566666543
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.63 E-value=74 Score=14.38 Aligned_cols=12 Identities=8% Similarity=-0.059 Sum_probs=8.0
Q ss_pred HHHHHHhCcccC
Q 027434 26 VGEMYLFNKRHD 37 (223)
Q Consensus 26 i~~~~~~~e~~s 37 (223)
.+-++|+||+|.
T Consensus 17 fffaiffreppr 28 (30)
T d2axtt1 17 FFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHTSCCCC
T ss_pred HHHHHHhcCCCC
Confidence 345578888775
No 3
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=10.75 E-value=2.3e+02 Score=18.98 Aligned_cols=46 Identities=11% Similarity=0.005 Sum_probs=29.8
Q ss_pred HhhcchhHHHHHhhhhhHHHHHHHHHhcCCcCCcchhhHHHHHHHH
Q 027434 162 LHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLA 207 (223)
Q Consensus 162 ~~~~s~~~~si~~~l~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g 207 (223)
.|..-+.........-.+......+.++|.+++.....+..+.+..
T Consensus 60 ~rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi 105 (199)
T d1iwga7 60 LQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGL 105 (199)
T ss_dssp CCCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHH
T ss_pred HhhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence 3544444444555555566666677788999998888887765443
No 4
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=9.95 E-value=1e+02 Score=18.47 Aligned_cols=16 Identities=6% Similarity=-0.018 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHhhhhh
Q 027434 202 FFGLLAGVFFARAKMW 217 (223)
Q Consensus 202 ~li~~g~~~~~~~~~~ 217 (223)
.+.+.+...|...|.|
T Consensus 40 ~~~V~~~l~~~~~~~r 55 (100)
T d3dtub2 40 TIFVTLLILYAVWRFH 55 (100)
T ss_dssp HHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHhhhhh
Confidence 3344455555443333
No 5
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=8.85 E-value=38 Score=20.35 Aligned_cols=14 Identities=7% Similarity=-0.349 Sum_probs=6.4
Q ss_pred HHHHHHHHHhhhhh
Q 027434 204 GLLAGVFFARAKMW 217 (223)
Q Consensus 204 i~~g~~~~~~~~~~ 217 (223)
.+.|.+.|...|.|
T Consensus 31 ~V~~~~~~~~~ryR 44 (91)
T d1fftb2 31 PAILMAVGFAWKYR 44 (91)
T ss_dssp HHHHHHHTTTTTTT
T ss_pred HHHHHHHhhheeee
Confidence 34455555444333
No 6
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108 {Porphyromonas gingivalis [TaxId: 837]}
Probab=8.28 E-value=1.7e+02 Score=17.52 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=20.5
Q ss_pred HHHHhhhhhcccccccchhhHHHHHHHHHH
Q 027434 46 LMIISAISGGITDLSFHAVGYAWQIINCFL 75 (223)
Q Consensus 46 l~~~Gv~~~~~~d~~~~~~G~~~~l~a~~~ 75 (223)
-...|++..+.+|.+.|-. -+|.+++.+|
T Consensus 88 asylgvimasdgdiddnel-alwtlistlc 116 (132)
T d2h5na1 88 ASYLGVIMASDGDIDDNEL-ALWTLISTLC 116 (132)
T ss_dssp HHHHHHHSCBTTBCCHHHH-HHHHHHHHHH
T ss_pred HHHhhheeccCCCCCccHh-HHHHHHHHHh
Confidence 4567888888888776633 3477777666
No 7
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=6.13 E-value=4e+02 Score=18.00 Aligned_cols=27 Identities=0% Similarity=-0.025 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCCcCCcchhhHHHHHH
Q 027434 179 IPLSVAGILLFKVPTSLENSASIFFGL 205 (223)
Q Consensus 179 v~~~~~~~~~~~e~~~~~~~~G~~li~ 205 (223)
+...+.+..+.|.+++....+|..+.+
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~ 121 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTI 121 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchh
Confidence 455666777889999999998888743
No 8
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=5.58 E-value=4.5e+02 Score=18.05 Aligned_cols=18 Identities=22% Similarity=0.073 Sum_probs=8.3
Q ss_pred cccChhHHHHHHHHHHhh
Q 027434 34 KRHDNRVWAALFLMIISA 51 (223)
Q Consensus 34 e~~s~~~~~~l~l~~~Gv 51 (223)
+|..+++...+.....++
T Consensus 284 ~r~~~~~~~~~~~~~~~~ 301 (417)
T d1pv7a_ 284 NRIGGKNALLLAGTIMSV 301 (417)
T ss_dssp HHHCHHHHHHHHHHHHHH
T ss_pred cccccccchhhhHHHHHH
Confidence 455555544444444443
No 9
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=5.34 E-value=2.1e+02 Score=17.19 Aligned_cols=9 Identities=0% Similarity=-0.086 Sum_probs=3.9
Q ss_pred HHHHHHHHh
Q 027434 205 LLAGVFFAR 213 (223)
Q Consensus 205 ~~g~~~~~~ 213 (223)
+.|...|..
T Consensus 49 V~~~~~~~~ 57 (107)
T d3ehbb2 49 VCLLLLICI 57 (107)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444433
No 10
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.99 E-value=2e+02 Score=15.43 Aligned_cols=13 Identities=15% Similarity=0.074 Sum_probs=5.5
Q ss_pred HHHHHHHHhhhhh
Q 027434 205 LLAGVFFARAKMW 217 (223)
Q Consensus 205 ~~g~~~~~~~~~~ 217 (223)
..+...+-+.++|
T Consensus 51 ~~~~~~~~~f~rk 63 (64)
T d2iuba2 51 VIAVIMVVYFKKK 63 (64)
T ss_dssp HHHHHHHTTTTSC
T ss_pred HHHHHHHHHHhcc
Confidence 3344444444433
Done!