BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027435
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 101/198 (51%), Gaps = 17/198 (8%)
Query: 2 FHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSV----GP 57
FH+V + + + + NTDGI SS +TI S I TGDD V++ G
Sbjct: 175 FHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGR 234
Query: 58 GAT-NLWIENVACGPGHGISLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFA 116
T N+ I + G GHG+S+G E GV NVTV + GT NG+RIKS +++ G
Sbjct: 235 AETRNISILHNDFGTGHGMSIGSETM--GVYNVTVDDLKMNGTTNGLRIKS-DKSAAGVV 291
Query: 117 RNILFQHALMNNVDNPIIIDQNYCPDNG-NCPGQASGVKISDVIYQDIHGTSATEVGVKL 175
+ + + +M NV PI+ID Y G N P SD+ ++D+ TS T+ V L
Sbjct: 292 NGVRYSNVVMKNVAKPIVIDTVYEKKEGSNVPDW------SDITFKDV--TSETKGVVVL 343
Query: 176 DCSSKNPCTGISLEDVKL 193
+ + +++++VKL
Sbjct: 344 NGENAKKPIEVTMKNVKL 361
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 101/192 (52%), Gaps = 21/192 (10%)
Query: 27 NTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGK--EQQEA 84
NTD V +S GV I+ + DDC++V G N+W C GHG+S+G ++
Sbjct: 178 NTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSGE-NIWFTGGTCIGGHGLSIGSVGDRSNN 236
Query: 85 GVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNV-DNPIIIDQNYCPDN 143
V+NVT+ T + ++N VRIK+ +G + I + + +M+ + D ++I Q+Y ++
Sbjct: 237 VVKNVTIEHSTVSNSENAVRIKTISGATGSVSE-ITYSNIVMSGISDYGVVIQQDY--ED 293
Query: 144 GNCPGQAS-GVKISDVIYQDIHG---TSATEVGVKLDCSSKNPCTGISLEDVKLI----- 194
G G+ + GV I DV + + G + ATE + L C S C+ + +DVK+
Sbjct: 294 GKPTGKPTNGVTIQDVKLESVTGSVDSGATE--IYLLCGS-GSCSDWTWDDVKVTGGKKS 350
Query: 195 --YKNQPAEASC 204
KN P+ ASC
Sbjct: 351 TACKNFPSVASC 362
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 10/189 (5%)
Query: 27 NTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGK--EQQEA 84
NTD + +S+ VTI + + DDCV+V G N++ C GHG+S+G + +
Sbjct: 157 NTDAFDIGTSTYVTISGATVYNQDDCVAVNSGE-NIYFSGGYCSGGHGLSIGSVGGRSDN 215
Query: 85 GVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQNYCPDNG 144
V+NVT T + NGVRIK+ T+G + L + I++ QNY D
Sbjct: 216 TVKNVTFVDSTIINSDNGVRIKTNIDTTGSVSDVTYKDITLTSIAKYGIVVQQNY-GDTS 274
Query: 145 NCPGQASGVKISDVIYQDIHGTSATE-VGVKLDCSSKNPCTGISLEDVKLIYKNQPAEAS 203
+ P +GV I+D + ++HG+ + + + C S C+ + DV + +
Sbjct: 275 STP--TTGVPITDFVLDNVHGSVVSSGTNILISCGS-GSCSDWTWTDVSV--SGGKTSSK 329
Query: 204 CTNADGSAS 212
CTN AS
Sbjct: 330 CTNVPSGAS 338
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 8/167 (4%)
Query: 27 NTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGK--EQQEA 84
NTDG + SS VT+ ++ + DDCV+V G TN+ + N+ C GHG+S+G + +
Sbjct: 165 NTDGFDISSSDHVTLDNNHVYNQDDCVAVTSG-TNIVVSNMYCSGGHGLSIGSVGGKSDN 223
Query: 85 GVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNP-IIIDQNYCPDN 143
V V S +QNG RIKS +G N+ +Q+ + N+ + + Q+Y N
Sbjct: 224 VVDGVQFLSSQVVNSQNGCRIKSNSGATGTI-NNVTYQNIALTNISTYGVDVQQDYL--N 280
Query: 144 GNCPGQAS-GVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLE 189
G G+ + GVKIS++ + + GT A+ C+G +
Sbjct: 281 GGPTGKPTNGVKISNIKFIKVTGTVASSAQDWFILCGDGSCSGFTFS 327
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 95/188 (50%), Gaps = 13/188 (6%)
Query: 27 NTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGK--EQQEA 84
NTDG + S+GV I + + DDC+++ G + + C GHG+S+G + +
Sbjct: 152 NTDGFDISESTGVYISGATVKNQDDCIAINSGES-ISFTGGTCSGGHGLSIGSVGGRDDN 210
Query: 85 GVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQNYCPDNG 144
V+NVT++ T + + NGVRIK+ + +G + L D I+I+Q+Y +NG
Sbjct: 211 TVKNVTISDSTVSNSANGVRIKTIYKETGDVSEITYSNIQLSGITDYGIVIEQDY--ENG 268
Query: 145 NCPGQAS-GVKISDVIYQDIHGT---SATEVGVKLDCSSKNPCT--GISLEDVKLIYK-- 196
+ G S G+ I+DV + GT AT+V + S + T G+ L K K
Sbjct: 269 SPTGTPSTGIPITDVTVDGVTGTLEDDATQVYILCGDGSCSDWTWSGVDLSGGKTSDKCE 328
Query: 197 NQPAEASC 204
N P+ ASC
Sbjct: 329 NVPSGASC 336
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 103/213 (48%), Gaps = 11/213 (5%)
Query: 2 FHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATN 61
FH ++ C+D +V + + E DGI V S+ + + D ++ D+CV+V A N
Sbjct: 151 FHFTMDTCSDGEVYNMAIRGGNEG-GLDGIDVWGSN-IWVHDVEVTNKDECVTVKSPANN 208
Query: 62 LWIENVACGPGHGISLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILF 121
+ +E++ C G ++G + V ++ +V + IKS G + G N+L
Sbjct: 209 ILVESIYCNWSGGCAMGSLGADTDVTDIVYRNVYTWSSNQMYMIKSNGGS--GTVSNVLL 266
Query: 122 QHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISDVIYQDIHGTSA---TEVGVKLDCS 178
++ + + + ID Y G GV+++++ ++ GT A T +++ CS
Sbjct: 267 ENFIGHGNAYSLDID-GYWSSMTAVAGD--GVQLNNITVKNWKGTEANGATRPPIRVVCS 323
Query: 179 SKNPCTGISLEDVKLIYKNQPAEAS-CTNADGS 210
PCT ++LED+ + ++ +E C +A GS
Sbjct: 324 DTAPCTDLTLEDIAIWTESGSSELYLCRSAYGS 356
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 10/166 (6%)
Query: 21 AAGESP---NTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISL 77
+AG+S NTD V SS+GV I + + DDC+++ G TN+ C GHG+S+
Sbjct: 144 SAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSG-TNITFTGGTCSGGHGLSI 202
Query: 78 GK--EQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIII 135
G + + V+ VT+++ + NGVRIK+ +G + L N I+I
Sbjct: 203 GSVGGRSDNTVKTVTISNSKIVNSDNGVRIKTVSGATGSVSGVTYSGITLSNIAKYGIVI 262
Query: 136 DQNYCPDNGNCPGQAS-GVKISDVIYQDIHGTSATE-VGVKLDCSS 179
+Q+Y +NG+ G + GV I+ + I G+ A+ V + C+S
Sbjct: 263 EQDY--ENGSPTGTPTNGVPITGLTLSKITGSVASSGTNVYILCAS 306
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
Resolution
pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With A Galacturonate At 1.00 A Resolution.
pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With Two Galacturonate At 1.15 A Resolution
Length = 335
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 27 NTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQQEAGV 86
NTDG V S++ VTI + + DDC+++ G N+ EN C GHGIS+G V
Sbjct: 151 NTDGFDV-SANNVTIQNCIVKNQDDCIAINDG-NNIRFENNQCSGGHGISIGSIATGKHV 208
Query: 87 QNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNP-IIIDQNYCPDNGN 145
NV + T T + GVRIK+ + + + ++ + ++I Q+Y D GN
Sbjct: 209 SNVVIKGNTVTRSMYGVRIKAQRTATSASVSGVTYDANTISGIAKYGVLISQSYPDDVGN 268
Query: 146 CPGQASGVKISDVIY 160
PG +G SDV +
Sbjct: 269 -PG--TGAPFSDVNF 280
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 20/210 (9%)
Query: 2 FHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGA-- 59
FH ++N N V + ++ N DGI +S V + ++ TGDDC++ G
Sbjct: 354 FHGIMNLENHNVVANGLIHQTYDANNGDGIEFGNSQNVMVFNNFFDTGDDCINFAAGTGE 413
Query: 60 --------TNLWIENVACGPGHGISLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRT 111
W+ N GHG + A ++++ + T G+R KS T
Sbjct: 414 KAQEQEPMKGAWLFNNYFRMGHGAIVTGSHTGAWIEDILAENNVMYLTDIGLRAKS-TST 472
Query: 112 SGGFARNILFQHALMNNVDNPI-IIDQNYCPDNGN-------CPGQASGVKISDVIYQDI 163
GG ARN+ F++ M ++ + ++ +Y N N P Q + +V +
Sbjct: 473 IGGGARNVTFRNNAMRDLAKQVMVMTLDYADSNANIDYPPAKIPAQFYDFTLKNVTVDNS 532
Query: 164 HGTSATEVGVKLDCSSKNPCTGISLEDVKL 193
G + + + +K D ++K + + +V+L
Sbjct: 533 TGKNPS-IEIKGDTANKAWHRLVHVNNVQL 561
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 25/152 (16%)
Query: 11 DVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPG------------ 58
+V ++ +++S+ G PN DGI +S + I + TGDD V + G
Sbjct: 223 NVIIRNIEISSTG--PNNDGIDPESCKYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPS 280
Query: 59 -----ATNLWIENVACGPGHGISLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSG 113
NL I + G G+ +G E GV+NV + + + +R+K+ R G
Sbjct: 281 EYILVRDNLVISQASHG---GLVIGSEMS-GGVRNVVARNNVYMNVERALRLKTNSR-RG 335
Query: 114 GFARNILFQHALMNNVDNPII-IDQNYCPDNG 144
G+ NI F + NV +I I+ Y + G
Sbjct: 336 GYMENIFFIDNVAVNVSEEVIRINLRYDNEEG 367
>pdb|3VI3|H Chain H, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI3|F Chain F, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI4|H Chain H, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
pdb|3VI4|F Chain F, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
Length = 218
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 31 IHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGI 75
+H+Q S G ++ C + G T+ WIE V PGHG+
Sbjct: 2 VHLQQS-GAELMKPGASVKISCKATGYTFTSYWIEWVKQRPGHGL 45
>pdb|2E50|A Chain A, Crystal Structure Of SetTAF-1betaINHAT
pdb|2E50|B Chain B, Crystal Structure Of SetTAF-1betaINHAT
pdb|2E50|P Chain P, Crystal Structure Of SetTAF-1betaINHAT
pdb|2E50|Q Chain Q, Crystal Structure Of SetTAF-1betaINHAT
Length = 225
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 28/72 (38%)
Query: 61 NLWIENVACGPGHGISLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNIL 120
N W+ P LG+E +EA V F ++G RI + + F +L
Sbjct: 80 NFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVL 139
Query: 121 FQHALMNNVDNP 132
+ MN +P
Sbjct: 140 SKEFHMNESGDP 151
>pdb|1W0O|A Chain A, Vibrio Cholerae Sialidase
pdb|1W0P|A Chain A, Vibrio Cholerae Sialidase With Alpha-2,6-Sialyllactose
Length = 781
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 44 SKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQQEAGVQN 88
+KI TG+ G + N GPGHGI+L ++Q +G QN
Sbjct: 528 TKIKTGNTMSLYGNASVN-------PGPGHGITLTRQQNISGSQN 565
>pdb|1KIT|A Chain A, Vibrio Cholerae Neuraminidase
Length = 757
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 44 SKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQQEAGVQN 88
+KI TG+ G + N GPGHGI+L ++Q +G QN
Sbjct: 504 TKIKTGNTMSLYGNASVN-------PGPGHGITLTRQQNISGSQN 541
>pdb|3ZXA|C Chain C, Structure And Assembly Of Turnip Crinkle Virus I. X-Ray
Crystallographic Structure Analysis At 3.2 A Resolution
pdb|3ZX8|A Chain A, Cryo-Em Reconstruction Of Native And Expanded Turnip
Crinkle Virus
pdb|3ZX8|B Chain B, Cryo-Em Reconstruction Of Native And Expanded Turnip
Crinkle Virus
pdb|3ZX8|C Chain C, Cryo-Em Reconstruction Of Native And Expanded Turnip
Crinkle Virus
pdb|3ZX9|A Chain A, Cryo-Em Reconstruction Of Native And Expanded Turnip
Crinkle Virus
pdb|3ZX9|B Chain B, Cryo-Em Reconstruction Of Native And Expanded Turnip
Crinkle Virus
pdb|3ZX9|C Chain C, Cryo-Em Reconstruction Of Native And Expanded Turnip
Crinkle Virus
Length = 347
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 96 FTGTQNGVRIKSWGRT--------------SGGFARNILFQHALMNNVDNPIIIDQNYCP 141
F G ++G R+ SW +T +G F+ + ++ A ++ ++N D +
Sbjct: 249 FAGVKDGPRLVSWSKTKGTAGWEHDCHFLGTGNFSLTLFYEKAPVSGLENADASDFSVLG 308
Query: 142 DNGNCPGQASGVKISD 157
+ Q +GVK+++
Sbjct: 309 EAAAGSVQWAGVKVAE 324
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,151,462
Number of Sequences: 62578
Number of extensions: 302977
Number of successful extensions: 492
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 21
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)