Query 027435
Match_columns 223
No_of_seqs 175 out of 1177
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 09:53:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027435.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027435hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02155 polygalacturonase 100.0 1.9E-51 4E-56 365.6 29.1 222 1-222 168-393 (394)
2 PLN03003 Probable polygalactur 100.0 8.8E-51 1.9E-55 364.6 29.8 221 1-222 161-390 (456)
3 PLN02793 Probable polygalactur 100.0 2.6E-50 5.5E-55 363.3 29.7 221 1-222 200-424 (443)
4 PLN02218 polygalacturonase ADP 100.0 2.8E-50 6.2E-55 361.6 28.2 214 1-221 215-431 (431)
5 PLN02188 polygalacturonase/gly 100.0 6.6E-50 1.4E-54 356.9 29.3 220 1-221 178-404 (404)
6 PLN03010 polygalacturonase 100.0 3.1E-49 6.7E-54 352.2 29.4 221 1-222 180-404 (409)
7 PF00295 Glyco_hydro_28: Glyco 100.0 1.9E-46 4.1E-51 328.3 25.5 206 1-210 115-323 (326)
8 COG5434 PGU1 Endopygalactoruna 99.9 2.8E-26 6.1E-31 209.3 14.4 133 1-136 261-405 (542)
9 PLN02218 polygalacturonase ADP 99.9 6.1E-24 1.3E-28 191.4 22.8 173 3-197 194-384 (431)
10 PLN02155 polygalacturonase 99.9 6.5E-23 1.4E-27 182.8 23.9 173 4-197 148-339 (394)
11 PLN02188 polygalacturonase/gly 99.9 7E-23 1.5E-27 183.3 23.9 175 3-197 157-350 (404)
12 PLN02793 Probable polygalactur 99.9 9.9E-23 2.2E-27 184.3 24.3 172 3-196 179-369 (443)
13 PF00295 Glyco_hydro_28: Glyco 99.9 1.6E-22 3.5E-27 177.2 24.4 171 4-197 95-284 (326)
14 PLN03003 Probable polygalactur 99.9 1.4E-22 3.1E-27 182.6 23.4 173 3-197 140-333 (456)
15 PLN03010 polygalacturonase 99.9 3.2E-22 7E-27 178.9 24.4 173 3-197 159-350 (409)
16 COG5434 PGU1 Endopygalactoruna 99.7 6E-17 1.3E-21 148.4 15.8 148 3-168 240-398 (542)
17 PF03718 Glyco_hydro_49: Glyco 99.3 4.3E-10 9.4E-15 102.0 17.7 179 1-195 343-553 (582)
18 PF03718 Glyco_hydro_49: Glyco 98.8 1.7E-07 3.6E-12 85.5 13.5 174 2-194 321-513 (582)
19 smart00656 Amb_all Amb_all dom 98.6 9.3E-07 2E-11 72.0 11.5 98 2-99 32-144 (190)
20 TIGR03805 beta_helix_1 paralle 98.5 1.7E-06 3.6E-11 75.8 12.7 89 7-106 60-158 (314)
21 TIGR03805 beta_helix_1 paralle 98.5 2E-06 4.3E-11 75.3 13.1 121 2-129 78-203 (314)
22 PF13229 Beta_helix: Right han 98.5 4.1E-06 9E-11 64.5 13.3 116 4-137 3-121 (158)
23 PF12541 DUF3737: Protein of u 98.3 5E-06 1.1E-10 69.8 10.4 34 6-46 94-127 (277)
24 PF00544 Pec_lyase_C: Pectate 98.3 2.3E-06 5E-11 70.2 8.4 97 2-99 37-158 (200)
25 COG3866 PelB Pectate lyase [Ca 98.3 1.1E-05 2.4E-10 69.0 11.3 98 2-99 117-229 (345)
26 PF13229 Beta_helix: Right han 98.1 3.7E-05 8E-10 59.1 10.7 93 29-136 1-96 (158)
27 PF12541 DUF3737: Protein of u 98.1 1.4E-05 3E-10 67.2 8.1 104 6-132 114-228 (277)
28 PF05048 NosD: Periplasmic cop 97.9 0.00027 5.8E-09 59.0 12.2 67 5-77 17-84 (236)
29 PF05048 NosD: Periplasmic cop 97.8 0.00038 8.3E-09 58.1 11.6 111 4-134 38-150 (236)
30 PF12708 Pectate_lyase_3: Pect 97.8 0.0016 3.4E-08 53.2 14.9 45 12-56 94-141 (225)
31 COG3866 PelB Pectate lyase [Ca 97.7 0.00057 1.2E-08 58.7 11.6 118 4-129 95-229 (345)
32 smart00656 Amb_all Amb_all dom 97.7 0.00052 1.1E-08 55.8 10.1 94 30-129 33-144 (190)
33 PF12708 Pectate_lyase_3: Pect 97.4 0.01 2.2E-07 48.3 15.1 103 39-163 94-220 (225)
34 TIGR03808 RR_plus_rpt_1 twin-a 97.4 0.005 1.1E-07 55.9 13.7 54 6-60 111-167 (455)
35 TIGR03808 RR_plus_rpt_1 twin-a 96.9 0.039 8.4E-07 50.3 14.6 69 3-77 137-208 (455)
36 PF00544 Pec_lyase_C: Pectate 96.9 0.0036 7.9E-08 51.3 7.4 92 30-129 38-158 (200)
37 PF09251 PhageP22-tail: Salmon 94.0 0.74 1.6E-05 41.7 10.5 45 60-108 311-355 (549)
38 PLN02773 pectinesterase 93.0 4 8.7E-05 35.9 13.4 112 8-129 100-212 (317)
39 PRK10123 wcaM putative colanic 92.3 0.2 4.4E-06 43.2 4.2 38 85-125 244-281 (464)
40 TIGR03804 para_beta_helix para 91.8 0.26 5.5E-06 29.8 3.2 39 30-69 1-39 (44)
41 PF03211 Pectate_lyase: Pectat 90.6 8.8 0.00019 31.9 14.9 129 10-162 61-194 (215)
42 PF07602 DUF1565: Protein of u 90.2 10 0.00023 32.1 13.5 99 31-137 91-196 (246)
43 TIGR03804 para_beta_helix para 90.1 0.72 1.6E-05 27.8 4.1 40 4-48 2-41 (44)
44 PLN02480 Probable pectinestera 90.0 8.8 0.00019 34.2 12.5 82 8-98 130-217 (343)
45 PF07602 DUF1565: Protein of u 89.3 4.3 9.3E-05 34.4 9.5 98 4-106 91-195 (246)
46 COG3420 NosD Nitrous oxidase a 88.9 16 0.00035 32.5 14.0 69 2-71 121-192 (408)
47 PLN02708 Probable pectinestera 88.7 11 0.00025 35.7 12.8 113 8-129 328-449 (553)
48 PLN02506 putative pectinestera 87.6 11 0.00024 35.6 12.0 83 7-98 316-399 (537)
49 PF01696 Adeno_E1B_55K: Adenov 86.9 9.9 0.00022 34.3 10.7 80 10-100 121-201 (386)
50 PF01095 Pectinesterase: Pecti 86.4 7.2 0.00016 34.0 9.5 112 8-129 85-202 (298)
51 PLN02916 pectinesterase family 86.1 21 0.00045 33.5 12.7 81 8-97 275-356 (502)
52 PLN02665 pectinesterase family 85.8 26 0.00057 31.5 14.4 114 7-129 151-272 (366)
53 PRK10123 wcaM putative colanic 85.7 3.8 8.1E-05 35.6 7.1 93 31-129 262-374 (464)
54 PLN02170 probable pectinestera 85.5 33 0.00072 32.4 14.8 113 8-129 311-427 (529)
55 PLN03043 Probable pectinestera 85.4 23 0.00051 33.5 12.9 82 8-98 311-393 (538)
56 PLN02698 Probable pectinestera 85.1 20 0.00043 33.6 12.2 113 8-129 268-385 (497)
57 PLN02416 probable pectinestera 84.7 22 0.00049 33.6 12.4 82 8-98 315-397 (541)
58 PLN02201 probable pectinestera 84.7 29 0.00064 32.7 13.1 82 8-98 291-373 (520)
59 PLN02217 probable pectinestera 84.5 20 0.00042 34.9 12.1 121 8-129 335-486 (670)
60 PLN02682 pectinesterase family 83.9 32 0.0007 31.0 12.9 113 8-129 161-280 (369)
61 PLN02745 Putative pectinestera 83.9 33 0.00072 32.9 13.3 113 8-129 370-487 (596)
62 PLN02713 Probable pectinestera 83.5 22 0.00048 33.9 11.9 81 8-97 338-419 (566)
63 PLN02484 probable pectinestera 83.3 29 0.00063 33.2 12.7 81 8-97 358-439 (587)
64 PLN02995 Probable pectinestera 83.3 28 0.00061 33.0 12.4 82 8-98 310-392 (539)
65 PLN02468 putative pectinestera 83.1 23 0.0005 33.8 11.9 81 8-97 343-424 (565)
66 PLN02301 pectinesterase/pectin 82.3 34 0.00073 32.5 12.6 82 8-98 321-403 (548)
67 PLN02488 probable pectinestera 82.3 44 0.00096 31.4 13.3 114 8-130 282-400 (509)
68 PLN02176 putative pectinestera 81.4 30 0.00066 30.8 11.3 81 8-97 120-207 (340)
69 PLN02497 probable pectinestera 81.1 34 0.00074 30.3 11.5 81 8-97 113-201 (331)
70 PLN02313 Pectinesterase/pectin 79.8 47 0.001 31.8 12.7 113 8-129 360-477 (587)
71 PRK10531 acyl-CoA thioesterase 78.8 53 0.0012 30.1 12.5 114 8-129 204-336 (422)
72 PLN02933 Probable pectinestera 78.3 62 0.0014 30.6 14.8 113 8-129 303-420 (530)
73 PLN02634 probable pectinestera 76.7 57 0.0012 29.3 12.5 82 8-98 147-234 (359)
74 PLN02432 putative pectinestera 76.5 51 0.0011 28.7 13.1 80 8-97 92-172 (293)
75 PLN02990 Probable pectinestera 76.1 75 0.0016 30.4 14.7 114 8-130 345-463 (572)
76 PLN02314 pectinesterase 76.0 56 0.0012 31.3 12.1 81 8-97 363-444 (586)
77 PLN02304 probable pectinestera 75.4 63 0.0014 29.2 13.2 82 8-98 160-247 (379)
78 PF01696 Adeno_E1B_55K: Adenov 75.2 20 0.00043 32.4 8.3 60 37-103 121-182 (386)
79 PLN02773 pectinesterase 73.9 63 0.0014 28.5 12.2 66 119-194 173-238 (317)
80 PLN02197 pectinesterase 73.7 34 0.00075 32.7 10.0 81 8-97 362-443 (588)
81 PLN02671 pectinesterase 73.6 68 0.0015 28.8 13.0 82 8-98 152-238 (359)
82 PF09251 PhageP22-tail: Salmon 67.7 14 0.00031 33.8 5.7 66 59-127 263-348 (549)
83 PLN02201 probable pectinestera 64.8 1E+02 0.0022 29.1 11.0 37 157-194 397-440 (520)
84 PRK10531 acyl-CoA thioesterase 62.8 1.3E+02 0.0027 27.7 10.9 19 87-105 238-256 (422)
85 PLN02698 Probable pectinestera 61.2 96 0.0021 29.1 10.1 37 157-194 374-417 (497)
86 PF01095 Pectinesterase: Pecti 60.9 63 0.0014 28.1 8.4 111 8-132 113-239 (298)
87 PLN02301 pectinesterase/pectin 60.8 1.1E+02 0.0023 29.2 10.4 37 157-194 427-470 (548)
88 PLN02916 pectinesterase family 60.4 1.3E+02 0.0029 28.2 10.9 38 156-194 380-424 (502)
89 PLN02713 Probable pectinestera 59.9 91 0.002 29.8 9.9 37 157-194 444-487 (566)
90 PLN02313 Pectinesterase/pectin 59.5 77 0.0017 30.4 9.3 12 88-99 391-402 (587)
91 PLN02217 probable pectinestera 58.3 68 0.0015 31.3 8.8 37 157-194 441-484 (670)
92 PLN02484 probable pectinestera 56.7 93 0.002 29.9 9.4 37 157-194 464-507 (587)
93 PLN02314 pectinesterase 56.6 1E+02 0.0023 29.5 9.7 38 156-194 468-507 (586)
94 smart00710 PbH1 Parallel beta- 56.0 17 0.00037 18.0 2.7 9 39-47 4-12 (26)
95 PLN02468 putative pectinestera 55.9 1.1E+02 0.0023 29.3 9.6 37 157-194 449-488 (565)
96 PLN02170 probable pectinestera 55.1 1.6E+02 0.0034 28.0 10.4 35 157-194 416-450 (529)
97 PLN02480 Probable pectinestera 54.6 40 0.00088 30.0 6.2 76 37-129 132-218 (343)
98 PLN03043 Probable pectinestera 54.2 1.2E+02 0.0027 28.7 9.7 11 157-167 417-427 (538)
99 PLN02990 Probable pectinestera 53.6 1.3E+02 0.0028 28.8 9.8 37 157-194 451-494 (572)
100 PLN02197 pectinesterase 53.6 1E+02 0.0022 29.6 9.1 37 157-194 469-512 (588)
101 PLN02416 probable pectinestera 52.8 1.1E+02 0.0024 29.1 9.1 36 157-193 421-463 (541)
102 PLN02432 putative pectinestera 49.2 1.8E+02 0.0039 25.3 10.3 35 157-194 194-228 (293)
103 PLN02995 Probable pectinestera 48.4 1.5E+02 0.0032 28.2 9.3 38 156-194 415-459 (539)
104 PLN02506 putative pectinestera 46.6 1.6E+02 0.0035 27.9 9.2 35 157-194 423-457 (537)
105 PF08480 Disaggr_assoc: Disagg 46.3 1.6E+02 0.0035 24.0 8.8 14 85-98 62-75 (198)
106 PLN02488 probable pectinestera 45.4 2.7E+02 0.0059 26.3 10.6 37 157-194 388-431 (509)
107 PLN02933 Probable pectinestera 44.8 2.8E+02 0.0061 26.3 11.0 37 157-194 409-452 (530)
108 PF14592 Chondroitinas_B: Chon 44.6 2.6E+02 0.0056 25.8 11.9 170 8-182 97-302 (425)
109 COG3420 NosD Nitrous oxidase a 38.5 1.6E+02 0.0036 26.4 7.3 22 26-47 170-191 (408)
110 COG4677 PemB Pectin methyleste 34.3 1.4E+02 0.0031 26.6 6.2 12 59-70 220-231 (405)
111 PLN02708 Probable pectinestera 31.5 4.7E+02 0.01 25.0 10.2 113 8-129 356-487 (553)
112 PLN02745 Putative pectinestera 27.5 5.7E+02 0.012 24.7 10.6 114 8-130 398-522 (596)
113 PF14592 Chondroitinas_B: Chon 24.2 3.6E+02 0.0078 24.9 7.3 32 101-136 264-295 (425)
114 PF03211 Pectate_lyase: Pectat 21.2 4.8E+02 0.01 21.6 13.4 107 11-123 83-194 (215)
115 PF08480 Disaggr_assoc: Disagg 20.1 4.9E+02 0.011 21.3 9.7 76 60-136 2-83 (198)
No 1
>PLN02155 polygalacturonase
Probab=100.00 E-value=1.9e-51 Score=365.56 Aligned_cols=222 Identities=57% Similarity=1.028 Sum_probs=203.1
Q ss_pred CcEEEEECeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEcee
Q 027435 1 MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKE 80 (223)
Q Consensus 1 ~w~i~~~~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~ 80 (223)
|||+++.+|+||+|++++|.+|.++|||||||+.+|+||+|+||+|.+|||||++|++++||+|+||+|..|||++|||+
T Consensus 168 ~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~ 247 (394)
T PLN02155 168 VSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSL 247 (394)
T ss_pred CeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccc
Confidence 79999999999999999999998899999999999999999999999999999999999999999999999999999996
Q ss_pred c---CCCCEEEEEEEeEEEeCcceeeEEEeeCCCCCeeEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCceEEEe
Q 027435 81 Q---QEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISD 157 (223)
Q Consensus 81 ~---~~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~n 157 (223)
. ..++++||+|+||+|.++.+|+|||||.+.++|.|+||+|+||+|+++++||.|++.|......++...+.+.|+|
T Consensus 248 g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~ 327 (394)
T PLN02155 248 AKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQ 327 (394)
T ss_pred cccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEE
Confidence 3 2478999999999999999999999986546899999999999999999999999999765444554455689999
Q ss_pred EEEEeEEEEccCcceEEEecCCCCceeceEEEeEEEEeCC-CCcceeeeecccCCcceeeCCCCCC
Q 027435 158 VIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKN-QPAEASCTNADGSASGFVLPNSCLK 222 (223)
Q Consensus 158 I~~~nI~~~~~~~~~~~i~g~~~~~~~ni~~~ni~i~~~~-~~~~~~C~~~~~~~~~~~~~~~c~~ 222 (223)
|+|+||+++.....+++|.|.++.||+||+|+||+++.++ .++.+.|.|+.|...|.+.|.+|.|
T Consensus 328 It~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~G~~~~~~~p~~c~~ 393 (394)
T PLN02155 328 VTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSCLN 393 (394)
T ss_pred EEEEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCCCccCcEEeccEeEEcccCCcccccC
Confidence 9999999998866789999999999999999999999875 4468999999999999778889987
No 2
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=8.8e-51 Score=364.64 Aligned_cols=221 Identities=43% Similarity=0.754 Sum_probs=199.2
Q ss_pred CcEEEEECeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEcee
Q 027435 1 MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKE 80 (223)
Q Consensus 1 ~w~i~~~~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~ 80 (223)
|||+++.+|++|+|++++|.+|..+|||||||+.+|+||+|+||+|.+|||||++|++++||+|+||+|..+|||+|||+
T Consensus 161 ~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSl 240 (456)
T PLN03003 161 MAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSL 240 (456)
T ss_pred cEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeec
Confidence 79999999999999999999998899999999999999999999999999999999999999999999999999999998
Q ss_pred cCC---CCEEEEEEEeEEEeCcceeeEEEeeCCCCCeeEEeEEEEeEEEeCCCccEEEEeeeCCCCCC--CCCCCCceEE
Q 027435 81 QQE---AGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQNYCPDNGN--CPGQASGVKI 155 (223)
Q Consensus 81 ~~~---~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~--~~~~~~~~~i 155 (223)
+.. +.|+||+|+||++.++.+|+|||||+| ++|.|+||+|+||+|+++.+||.|++.|...... +....+.+.|
T Consensus 241 g~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~G-g~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~I 319 (456)
T PLN03003 241 GKDGETATVENVCVQNCNFRGTMNGARIKTWQG-GSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEV 319 (456)
T ss_pred cCCCCcceEEEEEEEeeEEECCCcEEEEEEeCC-CCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEE
Confidence 742 459999999999999999999999988 6899999999999999999999999999754321 2233456899
Q ss_pred EeEEEEeEEEEccCcceEEEecCCCCceeceEEEeEEEEeCC----CCcceeeeecccCCcceeeCCCCCC
Q 027435 156 SDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKN----QPAEASCTNADGSASGFVLPNSCLK 222 (223)
Q Consensus 156 ~nI~~~nI~~~~~~~~~~~i~g~~~~~~~ni~~~ni~i~~~~----~~~~~~C~~~~~~~~~~~~~~~c~~ 222 (223)
+||+|+||+++.....++.|.|+++.||+||+|+||+++... .++.+.|.|+.|...+.+.|.+|.+
T Consensus 320 snI~f~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~~ 390 (456)
T PLN03003 320 SKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLE 390 (456)
T ss_pred EeEEEEeEEEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCCCccc
Confidence 999999999988777789999999999999999999998762 2467999999999987554559986
No 3
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=2.6e-50 Score=363.27 Aligned_cols=221 Identities=46% Similarity=0.808 Sum_probs=202.2
Q ss_pred CcEEEEECeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEcee
Q 027435 1 MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKE 80 (223)
Q Consensus 1 ~w~i~~~~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~ 80 (223)
|||+++.+|+||+|++++|.+|..+|||||||+.+|+||+|+||+|+++||||++|++++||+|+||+|..|||++|||+
T Consensus 200 ~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSl 279 (443)
T PLN02793 200 QMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSL 279 (443)
T ss_pred CeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecc
Confidence 79999999999999999999998889999999999999999999999999999999999999999999999999999997
Q ss_pred cC---CCCEEEEEEEeEEEeCcceeeEEEeeCCCCCeeEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCceEEEe
Q 027435 81 QQ---EAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISD 157 (223)
Q Consensus 81 ~~---~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~n 157 (223)
.. .+.++||+|+||++.++.+|+|||||+| ++|.|+||+|+||+|+++.+||.|+++|......|..+.+.+.|+|
T Consensus 280 g~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g-~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~n 358 (443)
T PLN02793 280 GKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQG-GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVEN 358 (443)
T ss_pred cCcCCCCcEEEEEEEccEEeCCCceEEEEEeCC-CCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEe
Confidence 42 3679999999999999999999999988 7899999999999999999999999999764444544456789999
Q ss_pred EEEEeEEEEccCcceEEEecCCCCceeceEEEeEEEEeCC-CCcceeeeecccCCcceeeCCCCCC
Q 027435 158 VIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKN-QPAEASCTNADGSASGFVLPNSCLK 222 (223)
Q Consensus 158 I~~~nI~~~~~~~~~~~i~g~~~~~~~ni~~~ni~i~~~~-~~~~~~C~~~~~~~~~~~~~~~c~~ 222 (223)
|+|+||+++.....++.|.|.++.||+||+|+||+++..+ +.....|.|+.|...|.+.|.||.+
T Consensus 359 I~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~~~~~~C~n~~g~~~~~~~p~~C~~ 424 (443)
T PLN02793 359 ISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGDFTESFCWEAYGSSSGQVYPPPCFS 424 (443)
T ss_pred EEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecCCCCCCcEEEccEEeECCeEcCCcccc
Confidence 9999999998766689999999999999999999999774 4456899999999999999999974
No 4
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=2.8e-50 Score=361.58 Aligned_cols=214 Identities=45% Similarity=0.847 Sum_probs=195.9
Q ss_pred CcEEEEECeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEcee
Q 027435 1 MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKE 80 (223)
Q Consensus 1 ~w~i~~~~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~ 80 (223)
|||+++.+|+||+|+|++|.+|.++|||||||+.+|+||+|+||+|.+|||||++|++++||+|+||+|..|||++|||+
T Consensus 215 ~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~ 294 (431)
T PLN02218 215 QIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSL 294 (431)
T ss_pred CEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcC
Confidence 79999999999999999999998899999999999999999999999999999999999999999999999999999998
Q ss_pred cC---CCCEEEEEEEeEEEeCcceeeEEEeeCCCCCeeEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCceEEEe
Q 027435 81 QQ---EAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISD 157 (223)
Q Consensus 81 ~~---~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~n 157 (223)
+. .+.|+||+|+||++.++.+|+||||++| ++|.|+||+|+||+|+++++||.|++.|.... .|+.+++.+.|+|
T Consensus 295 g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~G-g~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~-~~~~~~s~v~I~n 372 (431)
T PLN02218 295 GDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQG-GSGTASNIIFQNIQMENVKNPIIIDQDYCDKS-KCTSQQSAVQVKN 372 (431)
T ss_pred CCCCCCceEEEEEEEccEEecCCcceEEeecCC-CCeEEEEEEEEeEEEEcccccEEEEeeccCCC-CCCCCCCCeEEEE
Confidence 73 2579999999999999999999999988 78999999999999999999999999998643 3554456789999
Q ss_pred EEEEeEEEEccCcceEEEecCCCCceeceEEEeEEEEeCCCCcceeeeecccCCcceeeCCCCC
Q 027435 158 VIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKNQPAEASCTNADGSASGFVLPNSCL 221 (223)
Q Consensus 158 I~~~nI~~~~~~~~~~~i~g~~~~~~~ni~~~ni~i~~~~~~~~~~C~~~~~~~~~~~~~~~c~ 221 (223)
|+|+||+++.....++.+.|.++.||+||+|+||+++.. ...|.|+.+...|.+.| .|+
T Consensus 373 I~~~NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~----~~~c~n~~~~~~~~~~p-~c~ 431 (431)
T PLN02218 373 VVYRNISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG----KATCTNANVVDKGAVSP-QCN 431 (431)
T ss_pred EEEEeEEEEecCCcEEEEEECCCCCEeeEEEEeEEEECC----eeeEEEeeEEEcccCCC-CCC
Confidence 999999999876678999999999999999999999842 46899999999986555 884
No 5
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=6.6e-50 Score=356.91 Aligned_cols=220 Identities=46% Similarity=0.842 Sum_probs=198.8
Q ss_pred CcEEEEECeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEce-
Q 027435 1 MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGK- 79 (223)
Q Consensus 1 ~w~i~~~~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs- 79 (223)
|||+++.+|+||+|++++|.++.++|||||||+++|+||+|+||+|.++||||++|++++||+|+|++|..+||++|||
T Consensus 178 ~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSl 257 (404)
T PLN02188 178 FFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSL 257 (404)
T ss_pred CeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCC
Confidence 7999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred ---ecCCCCEEEEEEEeEEEeCcceeeEEEeeCCC-CCeeEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCceEE
Q 027435 80 ---EQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRT-SGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKI 155 (223)
Q Consensus 80 ---~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~-~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i 155 (223)
++ .++++||+|+||++.++.+|+|||||.+. ++|.|+||+|+||+|+++++||.|++.|.......+..+..+.|
T Consensus 258 G~~~~-~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I 336 (404)
T PLN02188 258 GRYPN-EGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTL 336 (404)
T ss_pred CCCCc-CCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEE
Confidence 65 37899999999999999999999999752 45899999999999999999999999997532211122356899
Q ss_pred EeEEEEeEEEEccCcceEEEecCCCCceeceEEEeEEEEeCC--CCcceeeeecccCCcceeeCCCCC
Q 027435 156 SDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKN--QPAEASCTNADGSASGFVLPNSCL 221 (223)
Q Consensus 156 ~nI~~~nI~~~~~~~~~~~i~g~~~~~~~ni~~~ni~i~~~~--~~~~~~C~~~~~~~~~~~~~~~c~ 221 (223)
+||+|+||+++.....++.+.|.++.||+||+|+||+++.++ ++..+.|.|+++.+.|.+.|.+|+
T Consensus 337 ~nIt~~nI~gt~~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g~~~p~~C~ 404 (404)
T PLN02188 337 SDIYFKNIRGTSSSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPPPCP 404 (404)
T ss_pred EeEEEEEEEEEecCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEcccCcCCCCC
Confidence 999999999998766789999999999999999999999874 345799999999999999999996
No 6
>PLN03010 polygalacturonase
Probab=100.00 E-value=3.1e-49 Score=352.23 Aligned_cols=221 Identities=39% Similarity=0.713 Sum_probs=203.0
Q ss_pred CcEEEEECeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEcee
Q 027435 1 MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKE 80 (223)
Q Consensus 1 ~w~i~~~~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~ 80 (223)
|||+++.+|++|+|++++|.++..++||||||+.+|+||+|+||+|.++||||++|+++.++.|+++.|..+||++|||+
T Consensus 180 ~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~ 259 (409)
T PLN03010 180 KNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSL 259 (409)
T ss_pred ceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccC
Confidence 79999999999999999999988889999999999999999999999999999999999999999999999999999998
Q ss_pred cCC---CCEEEEEEEeEEEeCcceeeEEEeeCCCCCeeEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCceEEEe
Q 027435 81 QQE---AGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISD 157 (223)
Q Consensus 81 ~~~---~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~n 157 (223)
+.. ..|+||+|+||+|.++.+|+|||++.| ++|.|+||+|+||+|+++++||.|++.|......|..+++...|+|
T Consensus 260 g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G-~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isd 338 (409)
T PLN03010 260 GADGANAKVSDVHVTHCTFNQTTNGARIKTWQG-GQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISN 338 (409)
T ss_pred CCCCCCCeeEEEEEEeeEEeCCCcceEEEEecC-CCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEe
Confidence 742 349999999999999999999999988 7899999999999999999999999999875444544567899999
Q ss_pred EEEEeEEEEccCcceEEEecCCCCceeceEEEeEEEEeCC-CCcceeeeecccCCcceeeCCCCCC
Q 027435 158 VIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKN-QPAEASCTNADGSASGFVLPNSCLK 222 (223)
Q Consensus 158 I~~~nI~~~~~~~~~~~i~g~~~~~~~ni~~~ni~i~~~~-~~~~~~C~~~~~~~~~~~~~~~c~~ 222 (223)
|+|+||+++...+.+++|.|++..||+||+|+||+++.++ +++...|.|+.+...|.+.|.+|.+
T Consensus 339 i~~~ni~GT~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~~~~~~C~nv~g~~~~~~~~~~C~~ 404 (409)
T PLN03010 339 VKYVGFRGTTSNENAITLKCSAITHCKDVVMDDIDVTMENGEKPKVECQNVEGESSDTDLMRDCFK 404 (409)
T ss_pred EEEEeeEEEeCCCccEEEEeCCCCCEeceEEEEEEEEecCCCccceEeeCccccccCCCCCCcccc
Confidence 9999999998777799999999999999999999999875 4568999999999988888889974
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=1.9e-46 Score=328.33 Aligned_cols=206 Identities=40% Similarity=0.785 Sum_probs=184.8
Q ss_pred CcEEEEECeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEcee
Q 027435 1 MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKE 80 (223)
Q Consensus 1 ~w~i~~~~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~ 80 (223)
+||+++.+|+||+|++++|.++...+|+||||+.+|+||+|+||+|+++||||++|+++.||+|+||+|+.+||++|||+
T Consensus 115 ~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~ 194 (326)
T PF00295_consen 115 FWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSE 194 (326)
T ss_dssp SESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEEESSSESEEESSEECEEEEESEEEESSSEEEEEEE
T ss_pred eeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeecccccCcccccccccceEEEeEEEeccccceeeec
Confidence 79999999999999999999987789999999999999999999999999999999988899999999999999999999
Q ss_pred cCCC---CEEEEEEEeEEEeCcceeeEEEeeCCCCCeeEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCceEEEe
Q 027435 81 QQEA---GVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISD 157 (223)
Q Consensus 81 ~~~~---~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~n 157 (223)
+..+ .++||+|+||++.++.+|++||++++ ++|.|+||+||||+|+++.+|+.|++.|... ..++.++..+.|+|
T Consensus 195 ~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~-~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~-~~~~~~~~~~~i~n 272 (326)
T PF00295_consen 195 GSGGSQNDIRNVTFENCTIINTDNGIRIKTWPG-GGGYVSNITFENITMENVKYPIFIDQDYRDG-GPCGKPPSGVSISN 272 (326)
T ss_dssp SSSSE--EEEEEEEEEEEEESESEEEEEEEETT-TSEEEEEEEEEEEEEEEESEEEEEEEEECTT-EESSCSSSSSEEEE
T ss_pred cCCccccEEEeEEEEEEEeeccceEEEEEEecc-cceEEeceEEEEEEecCCceEEEEEeccccc-cccCcccCCceEEE
Confidence 8532 49999999999999999999999987 7899999999999999999999999999873 22333345679999
Q ss_pred EEEEeEEEEccCcceEEEecCCCCceeceEEEeEEEEeCCCCcceeeeecccC
Q 027435 158 VIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKNQPAEASCTNADGS 210 (223)
Q Consensus 158 I~~~nI~~~~~~~~~~~i~g~~~~~~~ni~~~ni~i~~~~~~~~~~C~~~~~~ 210 (223)
|+|+||+++.....++++.|.++.||+||+|+||+++. +.....|.|++..
T Consensus 273 I~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~--g~~~~~c~nv~~~ 323 (326)
T PF00295_consen 273 ITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITG--GKKPAQCKNVPSG 323 (326)
T ss_dssp EEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES--SBSESEEBSCCTT
T ss_pred EEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc--CCcCeEEECCCCC
Confidence 99999999988767999999999999999999999998 3678999998753
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=2.8e-26 Score=209.32 Aligned_cols=133 Identities=35% Similarity=0.600 Sum_probs=122.3
Q ss_pred CcEEEEECeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEecCCcceeecCC-----------eeeEEEEeeEE
Q 027435 1 MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPG-----------ATNLWIENVAC 69 (223)
Q Consensus 1 ~w~i~~~~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks~-----------s~nV~I~n~~~ 69 (223)
+|++|+..|+|++++|++|.+.... |+||||+.+|+||+|++|+|+++||||++|++ +++|+|+||++
T Consensus 261 ~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~ 339 (542)
T COG5434 261 LWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYF 339 (542)
T ss_pred cEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecCCceEEeecccCCcccccccccccEEEeccee
Confidence 5999999999999999999996543 99999999999999999999999999999986 69999999999
Q ss_pred cCCce-EEEceecCCCCEEEEEEEeEEEeCcceeeEEEeeCCCCCeeEEeEEEEeEEEeCCCccEEEE
Q 027435 70 GPGHG-ISLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIID 136 (223)
Q Consensus 70 ~~~~g-i~iGs~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~~~~i~i~ 136 (223)
..+|| +.+|+|+. ++++||+++||.|.++..|||||+..+ ++|.++||+|++++|.++..++.|.
T Consensus 340 ~~ghG~~v~Gse~~-ggv~ni~ved~~~~~~d~GLRikt~~~-~gG~v~nI~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 340 SSGHGGLVLGSEMG-GGVQNITVEDCVMDNTDRGLRIKTNDG-RGGGVRNIVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred cccccceEeeeecC-CceeEEEEEeeeeccCcceeeeeeecc-cceeEEEEEEecccccCcccceeee
Confidence 99995 66999994 999999999999999999999999988 8899999999999999996555444
No 9
>PLN02218 polygalacturonase ADPG
Probab=99.93 E-value=6.1e-24 Score=191.39 Aligned_cols=173 Identities=19% Similarity=0.324 Sum_probs=145.6
Q ss_pred EEEEECeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEec-----CCcceeecCCeeeEEEEeeEEcCC-ceEE
Q 027435 3 HIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGT-----GDDCVSVGPGATNLWIENVACGPG-HGIS 76 (223)
Q Consensus 3 ~i~~~~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~-----gDD~i~iks~s~nV~I~n~~~~~~-~gi~ 76 (223)
.+.|.+|+|++|+++++.+++.+ .+++..|+||+|++.+|.+ .-|+|.+.+ |+||+|+||++.++ ++|+
T Consensus 194 ~i~f~~~~nv~I~gitl~nSp~w----~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~s-s~nV~I~n~~I~tGDDcIa 268 (431)
T PLN02218 194 ALTFYNSKSLIVKNLRVRNAQQI----QISIEKCSNVQVSNVVVTAPADSPNTDGIHITN-TQNIRVSNSIIGTGDDCIS 268 (431)
T ss_pred EEEEEccccEEEeCeEEEcCCCE----EEEEEceeeEEEEEEEEeCCCCCCCCCcEeecc-cceEEEEccEEecCCceEE
Confidence 47899999999999999997653 4999999999999999997 459999987 99999999999998 5999
Q ss_pred EceecCCCCEEEEEEEeEEEeCcceeeEEEeeCCC-CCeeEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCceEE
Q 027435 77 LGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRT-SGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKI 155 (223)
Q Consensus 77 iGs~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~-~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i 155 (223)
|++. .+||+|+||++.. .+|+.|+|.... ..+.|+||+|+|+++.+..++++||++.+ ..+.+
T Consensus 269 Iksg-----s~nI~I~n~~c~~-GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~G----------g~G~v 332 (431)
T PLN02218 269 IESG-----SQNVQINDITCGP-GHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQG----------GSGTA 332 (431)
T ss_pred ecCC-----CceEEEEeEEEEC-CCCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCC----------CCeEE
Confidence 9753 5899999999975 579999998431 24789999999999999999999998632 35799
Q ss_pred EeEEEEeEEEEccCcceEEEe---cCC--------CCceeceEEEeEEEEeCC
Q 027435 156 SDVIYQDIHGTSATEVGVKLD---CSS--------KNPCTGISLEDVKLIYKN 197 (223)
Q Consensus 156 ~nI~~~nI~~~~~~~~~~~i~---g~~--------~~~~~ni~~~ni~i~~~~ 197 (223)
+||+|+||++..... |+.|. +.. ...++||+|+||+.+...
T Consensus 333 ~nI~f~ni~m~~V~~-pI~Idq~Y~~~~~~~~~~s~v~I~nI~~~NI~gtsa~ 384 (431)
T PLN02218 333 SNIIFQNIQMENVKN-PIIIDQDYCDKSKCTSQQSAVQVKNVVYRNISGTSAS 384 (431)
T ss_pred EEEEEEeEEEEcccc-cEEEEeeccCCCCCCCCCCCeEEEEEEEEeEEEEecC
Confidence 999999999999864 77774 211 123899999999998653
No 10
>PLN02155 polygalacturonase
Probab=99.92 E-value=6.5e-23 Score=182.85 Aligned_cols=173 Identities=18% Similarity=0.284 Sum_probs=144.9
Q ss_pred EEEECeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEecC-----CcceeecCCeeeEEEEeeEEcCC-ceEEE
Q 027435 4 IVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTG-----DDCVSVGPGATNLWIENVACGPG-HGISL 77 (223)
Q Consensus 4 i~~~~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~g-----DD~i~iks~s~nV~I~n~~~~~~-~gi~i 77 (223)
+.+.+|++++|+++++.+++.+ -+++..|+||+|++++|.+. -|+|.+.+ |+||+|+||++.++ ++++|
T Consensus 148 i~~~~~~nv~i~gitl~nSp~w----~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~-s~nV~I~~~~I~~gDDcIai 222 (394)
T PLN02155 148 ISFNSAKDVIISGVKSMNSQVS----HMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQF-STGVTFTGSTVQTGDDCVAI 222 (394)
T ss_pred eeEEEeeeEEEECeEEEcCCCe----EEEEECeeeEEEEEEEEECCCCCCCCCcccccc-ceeEEEEeeEEecCCceEEc
Confidence 7889999999999999997643 48999999999999999873 38999987 99999999999998 59999
Q ss_pred ceecCCCCEEEEEEEeEEEeCcceeeEEEeeCCC-CCeeEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCceEEE
Q 027435 78 GKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRT-SGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKIS 156 (223)
Q Consensus 78 Gs~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~-~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~ 156 (223)
++ +.+||+|+|+++.. .+|+.|+|.... ..+.|+||+++|+++.+..++++||++... .++.++
T Consensus 223 k~-----gs~nI~I~n~~c~~-GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~---------~gG~v~ 287 (394)
T PLN02155 223 GP-----GTRNFLITKLACGP-GHGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARP---------STGFVR 287 (394)
T ss_pred CC-----CCceEEEEEEEEEC-CceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCC---------CCEEEE
Confidence 75 35899999999986 479999997321 257899999999999999999999986332 357999
Q ss_pred eEEEEeEEEEccCcceEEEe---cC-----C----CCceeceEEEeEEEEeCC
Q 027435 157 DVIYQDIHGTSATEVGVKLD---CS-----S----KNPCTGISLEDVKLIYKN 197 (223)
Q Consensus 157 nI~~~nI~~~~~~~~~~~i~---g~-----~----~~~~~ni~~~ni~i~~~~ 197 (223)
||+|+||++..... |+.|. +. + ...++||+|+||+.+...
T Consensus 288 nI~f~ni~m~~v~~-pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~~ 339 (394)
T PLN02155 288 NVFFQDLVMKNVEN-PIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSAT 339 (394)
T ss_pred EEEEEeEEEcCccc-cEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEecC
Confidence 99999999998864 77773 21 1 124899999999988653
No 11
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.92 E-value=7e-23 Score=183.34 Aligned_cols=175 Identities=17% Similarity=0.279 Sum_probs=145.2
Q ss_pred EEEEECeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEec-----CCcceeecCCeeeEEEEeeEEcCC-ceEE
Q 027435 3 HIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGT-----GDDCVSVGPGATNLWIENVACGPG-HGIS 76 (223)
Q Consensus 3 ~i~~~~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~-----gDD~i~iks~s~nV~I~n~~~~~~-~gi~ 76 (223)
.+.|..|+|++|+++++.+++.+ .+++..|+||+|++++|.+ .-|+|.+.+ |+||+|+||++.++ +|++
T Consensus 157 ~i~f~~~~nv~i~gitl~nSp~w----~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~-s~nV~I~n~~I~~GDDcIa 231 (404)
T PLN02188 157 SVKFVNMNNTVVRGITSVNSKFF----HIALVECRNFKGSGLKISAPSDSPNTDGIHIER-SSGVYISDSRIGTGDDCIS 231 (404)
T ss_pred EEEEEeeeeEEEeCeEEEcCCCe----EEEEEccccEEEEEEEEeCCCCCCCCCcEeeeC-cccEEEEeeEEeCCCcEEE
Confidence 46889999999999999997653 5999999999999999997 459999988 99999999999997 5999
Q ss_pred EceecCCCCEEEEEEEeEEEeCcceeeEEEeeCC-CCCeeEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCceEE
Q 027435 77 LGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGR-TSGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKI 155 (223)
Q Consensus 77 iGs~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g-~~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i 155 (223)
+++. -+||+|+|+.+.. .+|+.|+|... +..+.|+||+|+|+++.+..++++||++.+. ...+.+
T Consensus 232 iksg-----~~nI~I~n~~c~~-ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~--------~~~G~v 297 (404)
T PLN02188 232 IGQG-----NSQVTITRIRCGP-GHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANS--------PGKSAA 297 (404)
T ss_pred EccC-----CccEEEEEEEEcC-CCcEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCC--------CCceEE
Confidence 9763 3799999999965 47999999532 1346799999999999999999999986432 134789
Q ss_pred EeEEEEeEEEEccCcceEEEe---cC-----C----CCceeceEEEeEEEEeCC
Q 027435 156 SDVIYQDIHGTSATEVGVKLD---CS-----S----KNPCTGISLEDVKLIYKN 197 (223)
Q Consensus 156 ~nI~~~nI~~~~~~~~~~~i~---g~-----~----~~~~~ni~~~ni~i~~~~ 197 (223)
+||+|+||++..... |+.|. |. + ...++||+|+||+.+...
T Consensus 298 ~nI~f~ni~m~~v~~-pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~~~ 350 (404)
T PLN02188 298 TNMTFENIVMNNVTN-PIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSS 350 (404)
T ss_pred EEEEEEeEEecCccc-eEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEecC
Confidence 999999999998864 87774 21 1 134899999999998753
No 12
>PLN02793 Probable polygalacturonase
Probab=99.92 E-value=9.9e-23 Score=184.26 Aligned_cols=172 Identities=20% Similarity=0.297 Sum_probs=144.1
Q ss_pred EEEEECeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEec-----CCcceeecCCeeeEEEEeeEEcCC-ceEE
Q 027435 3 HIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGT-----GDDCVSVGPGATNLWIENVACGPG-HGIS 76 (223)
Q Consensus 3 ~i~~~~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~-----gDD~i~iks~s~nV~I~n~~~~~~-~gi~ 76 (223)
.+.+.+|+|++|+++++.+++.+ -+.+..|+||+|++++|.+ .-|+|.+.+ |+||+|+||++.++ |+++
T Consensus 179 ~i~f~~~~nv~v~gitl~nSp~~----~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~-s~nV~I~n~~I~~gDDcIa 253 (443)
T PLN02793 179 AITFHKCKDLRVENLNVIDSQQM----HIAFTNCRRVTISGLKVIAPATSPNTDGIHISA-SRGVVIKDSIVRTGDDCIS 253 (443)
T ss_pred EEEEEeeccEEEECeEEEcCCCe----EEEEEccCcEEEEEEEEECCCCCCCCCcEeeec-cceEEEEeCEEeCCCCeEE
Confidence 37889999999999999997643 4899999999999999987 359999987 99999999999997 5999
Q ss_pred EceecCCCCEEEEEEEeEEEeCcceeeEEEeeCCC-CCeeEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCceEE
Q 027435 77 LGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRT-SGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKI 155 (223)
Q Consensus 77 iGs~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~-~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i 155 (223)
|++ +.+||+|+||++... +|+.|+|.... ..+.|+||+|+|+++.+..++++||++.+ +.+.+
T Consensus 254 ik~-----~s~nI~I~n~~c~~G-hGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g----------~~G~v 317 (443)
T PLN02793 254 IVG-----NSSRIKIRNIACGPG-HGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQG----------GSGNA 317 (443)
T ss_pred ecC-----CcCCEEEEEeEEeCC-ccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCC----------CCEEE
Confidence 964 358999999999765 69999997321 34679999999999999999999998732 34789
Q ss_pred EeEEEEeEEEEccCcceEEEec---CCC---------CceeceEEEeEEEEeC
Q 027435 156 SDVIYQDIHGTSATEVGVKLDC---SSK---------NPCTGISLEDVKLIYK 196 (223)
Q Consensus 156 ~nI~~~nI~~~~~~~~~~~i~g---~~~---------~~~~ni~~~ni~i~~~ 196 (223)
+||+|+||++..... |+.|.. ... ..++||+|+||+.+..
T Consensus 318 ~nItf~ni~m~nv~~-pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~~ 369 (443)
T PLN02793 318 SKITFQNIFMENVSN-PIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTSA 369 (443)
T ss_pred EEEEEEeEEEecCCc-eEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEEc
Confidence 999999999999874 887743 211 2389999999998763
No 13
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.91 E-value=1.6e-22 Score=177.24 Aligned_cols=171 Identities=23% Similarity=0.364 Sum_probs=142.5
Q ss_pred EEEECeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEecC-----CcceeecCCeeeEEEEeeEEcCC-ceEEE
Q 027435 4 IVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTG-----DDCVSVGPGATNLWIENVACGPG-HGISL 77 (223)
Q Consensus 4 i~~~~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~g-----DD~i~iks~s~nV~I~n~~~~~~-~gi~i 77 (223)
+.+..|++++|+++++.+++.+ .+.+..|+||+|++++|.+. .|+|.+.+ |+||+|+||++.++ ++++|
T Consensus 95 i~~~~~~~~~i~~i~~~nsp~w----~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~-s~nv~I~n~~i~~gDD~Iai 169 (326)
T PF00295_consen 95 IRFNNCKNVTIEGITIRNSPFW----HIHINDCDNVTISNITINNPANSPNTDGIDIDS-SKNVTIENCFIDNGDDCIAI 169 (326)
T ss_dssp EEEEEEEEEEEESEEEES-SSE----SEEEESEEEEEEESEEEEEGGGCTS--SEEEES-EEEEEEESEEEESSSESEEE
T ss_pred eeeeeecceEEEeeEecCCCee----EEEEEccCCeEEcceEEEecCCCCCcceEEEEe-eeEEEEEEeecccccCcccc
Confidence 6789999999999999997643 48999999999999999873 58999987 99999999999997 59999
Q ss_pred ceecCCCCEEEEEEEeEEEeCcceeeEEEeeCCCCC--eeEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCceEE
Q 027435 78 GKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSG--GFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKI 155 (223)
Q Consensus 78 Gs~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~--g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i 155 (223)
++.. .||+++||++.+. +|+.|+|... .+ ..|+||+|+|+++.+..++++|+++.. ..+.+
T Consensus 170 ks~~-----~ni~v~n~~~~~g-hGisiGS~~~-~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~----------~~G~v 232 (326)
T PF00295_consen 170 KSGS-----GNILVENCTCSGG-HGISIGSEGS-GGSQNDIRNVTFENCTIINTDNGIRIKTWPG----------GGGYV 232 (326)
T ss_dssp SSEE-----CEEEEESEEEESS-SEEEEEEESS-SSE--EEEEEEEEEEEEESESEEEEEEEETT----------TSEEE
T ss_pred cccc-----cceEEEeEEEecc-ccceeeeccC-CccccEEEeEEEEEEEeeccceEEEEEEecc----------cceEE
Confidence 8765 2999999999864 6899999853 11 369999999999999999999998632 45899
Q ss_pred EeEEEEeEEEEccCcceEEEec---C------C--CCceeceEEEeEEEEeCC
Q 027435 156 SDVIYQDIHGTSATEVGVKLDC---S------S--KNPCTGISLEDVKLIYKN 197 (223)
Q Consensus 156 ~nI~~~nI~~~~~~~~~~~i~g---~------~--~~~~~ni~~~ni~i~~~~ 197 (223)
+||+|+||++.... .|+.+.- . + ..+++||+|+||+.+..+
T Consensus 233 ~nI~f~ni~~~~v~-~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~nitg~~~~ 284 (326)
T PF00295_consen 233 SNITFENITMENVK-YPIFIDQDYRDGGPCGKPPSGVSISNITFRNITGTSAG 284 (326)
T ss_dssp EEEEEEEEEEEEES-EEEEEEEEECTTEESSCSSSSSEEEEEEEEEEEEEEST
T ss_pred eceEEEEEEecCCc-eEEEEEeccccccccCcccCCceEEEEEEEeeEEEecc
Confidence 99999999999987 6887742 1 1 135999999999998775
No 14
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.91 E-value=1.4e-22 Score=182.58 Aligned_cols=173 Identities=16% Similarity=0.246 Sum_probs=145.0
Q ss_pred EEEEECeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEecC-----CcceeecCCeeeEEEEeeEEcCC-ceEE
Q 027435 3 HIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTG-----DDCVSVGPGATNLWIENVACGPG-HGIS 76 (223)
Q Consensus 3 ~i~~~~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~g-----DD~i~iks~s~nV~I~n~~~~~~-~gi~ 76 (223)
.+.|.+|+|++|+++++.+++.+ .+++..|+||+|++.+|.+. -|+|.+.+ |+||+|+||++.++ ||++
T Consensus 140 ~l~f~~~~nv~I~gitl~NSp~w----~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~-S~nV~I~n~~I~tGDDCIa 214 (456)
T PLN03003 140 ALKFRSCNNLRLSGLTHLDSPMA----HIHISECNYVTISSLRINAPESSPNTDGIDVGA-SSNVVIQDCIIATGDDCIA 214 (456)
T ss_pred EEEEEecCCcEEeCeEEecCCcE----EEEEeccccEEEEEEEEeCCCCCCCCCcEeecC-cceEEEEecEEecCCCeEE
Confidence 47899999999999999997643 48999999999999999983 58999987 99999999999997 5999
Q ss_pred EceecCCCCEEEEEEEeEEEeCcceeeEEEeeCCC-CCeeEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCceEE
Q 027435 77 LGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRT-SGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKI 155 (223)
Q Consensus 77 iGs~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~-~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i 155 (223)
|++. .+||+|+||++.. .+|+.|+|.... ..+.|+||+|+|+++.+..++++||++.+ +.+.+
T Consensus 215 iksg-----s~NI~I~n~~c~~-GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~G----------g~G~v 278 (456)
T PLN03003 215 INSG-----TSNIHISGIDCGP-GHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQG----------GSGYA 278 (456)
T ss_pred eCCC-----CccEEEEeeEEEC-CCCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCC----------CCeEE
Confidence 9753 5899999999976 579999998431 23579999999999999999999999732 34789
Q ss_pred EeEEEEeEEEEccCcceEEE---ecC--C---------CCceeceEEEeEEEEeCC
Q 027435 156 SDVIYQDIHGTSATEVGVKL---DCS--S---------KNPCTGISLEDVKLIYKN 197 (223)
Q Consensus 156 ~nI~~~nI~~~~~~~~~~~i---~g~--~---------~~~~~ni~~~ni~i~~~~ 197 (223)
+||+|+||++..... |+.| +|. + ...++||+|+||+.+...
T Consensus 279 ~nItf~nI~m~nV~~-pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~GTs~~ 333 (456)
T PLN03003 279 RMITFNGITLDNVEN-PIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKS 333 (456)
T ss_pred EEEEEEeEEecCccc-eEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeEEEEeCc
Confidence 999999999998864 8877 331 1 124899999999987544
No 15
>PLN03010 polygalacturonase
Probab=99.91 E-value=3.2e-22 Score=178.90 Aligned_cols=173 Identities=14% Similarity=0.238 Sum_probs=143.1
Q ss_pred EEEEECeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEec-----CCcceeecCCeeeEEEEeeEEcCC-ceEE
Q 027435 3 HIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGT-----GDDCVSVGPGATNLWIENVACGPG-HGIS 76 (223)
Q Consensus 3 ~i~~~~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~-----gDD~i~iks~s~nV~I~n~~~~~~-~gi~ 76 (223)
.+.+.+|+|++|+++++.+++.+ -+++..|++|+|++++|.+ .-|+|.+.+ |+||+|+||++.++ +|++
T Consensus 159 ~l~~~~~~nv~v~gitl~nsp~~----~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~-s~nV~I~n~~I~~gDDcIa 233 (409)
T PLN03010 159 ALHISKCDNLTINGITSIDSPKN----HISIKTCNYVAISKINILAPETSPNTDGIDISY-STNINIFDSTIQTGDDCIA 233 (409)
T ss_pred eEEEEeecCeEEeeeEEEcCCce----EEEEeccccEEEEEEEEeCCCCCCCCCceeeec-cceEEEEeeEEecCCCeEE
Confidence 58899999999999999997653 4899999999999999997 358999987 99999999999998 5999
Q ss_pred EceecCCCCEEEEEEEeEEEeCcceeeEEEeeCCC-CCeeEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCceEE
Q 027435 77 LGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRT-SGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKI 155 (223)
Q Consensus 77 iGs~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~-~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i 155 (223)
|++.+ .++.|+++.+.. .+|+.|+|.... ..+.|+||+|+|+++.+..++++|+++.+ +.+.+
T Consensus 234 iksgs-----~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G----------~~G~v 297 (409)
T PLN03010 234 INSGS-----SNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQG----------GQGYA 297 (409)
T ss_pred ecCCC-----CcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecC----------CCEEE
Confidence 98643 577888888865 479999998431 22569999999999999999999999733 34789
Q ss_pred EeEEEEeEEEEccCcceEEEe---cCCC---------CceeceEEEeEEEEeCC
Q 027435 156 SDVIYQDIHGTSATEVGVKLD---CSSK---------NPCTGISLEDVKLIYKN 197 (223)
Q Consensus 156 ~nI~~~nI~~~~~~~~~~~i~---g~~~---------~~~~ni~~~ni~i~~~~ 197 (223)
+||+|+||++.... .|+.|. +... .+++||+|+||+.+...
T Consensus 298 ~nItf~nI~m~~v~-~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~ 350 (409)
T PLN03010 298 RNISFENITLINTK-NPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSN 350 (409)
T ss_pred EEeEEEeEEEecCC-ccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCC
Confidence 99999999999986 478773 2211 25799999999998654
No 16
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.74 E-value=6e-17 Score=148.39 Aligned_cols=148 Identities=20% Similarity=0.343 Sum_probs=129.0
Q ss_pred EEEEECeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEecCCc----ceeecCCeeeEEEEeeEEcCC-ceEEE
Q 027435 3 HIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDD----CVSVGPGATNLWIENVACGPG-HGISL 77 (223)
Q Consensus 3 ~i~~~~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD----~i~iks~s~nV~I~n~~~~~~-~gi~i 77 (223)
++.+..|+||++++++|.+++. .++++..|+|++++|..|.+.++ ++++.+ |+||+|++|+|..+ +++++
T Consensus 240 ~~~l~~c~NV~~~g~~i~ns~~----~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s-c~NvlI~~~~fdtgDD~I~i 314 (542)
T COG5434 240 TVVLKGCRNVLLEGLNIKNSPL----WTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS-CSNVLIEGCRFDTGDDCIAI 314 (542)
T ss_pred eEEEeccceEEEeeeEecCCCc----EEEeeecccCceecceEEECCCCCCCCcccccc-ceeEEEeccEEecCCceEEe
Confidence 6789999999999999999865 47999999999999999998654 999988 99999999999997 58887
Q ss_pred ceecC------CCCEEEEEEEeEEEeCcceeeEEEeeCCCCCeeEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCC
Q 027435 78 GKEQQ------EAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQAS 151 (223)
Q Consensus 78 Gs~~~------~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~ 151 (223)
.+... .+.-++|+|+||.|...+.++.++|+. +|.|+||++||+.|.+..++|+|++.-. .
T Consensus 315 ksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~---~ggv~ni~ved~~~~~~d~GLRikt~~~----------~ 381 (542)
T COG5434 315 KSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEM---GGGVQNITVEDCVMDNTDRGLRIKTNDG----------R 381 (542)
T ss_pred ecccCCcccccccccccEEEecceecccccceEeeeec---CCceeEEEEEeeeeccCcceeeeeeecc----------c
Confidence 65431 134699999999999988899999995 5899999999999999999999998633 3
Q ss_pred ceEEEeEEEEeEEEEcc
Q 027435 152 GVKISDVIYQDIHGTSA 168 (223)
Q Consensus 152 ~~~i~nI~~~nI~~~~~ 168 (223)
++.++||+|+++++...
T Consensus 382 gG~v~nI~~~~~~~~nv 398 (542)
T COG5434 382 GGGVRNIVFEDNKMRNV 398 (542)
T ss_pred ceeEEEEEEecccccCc
Confidence 47899999999988776
No 17
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.26 E-value=4.3e-10 Score=102.03 Aligned_cols=179 Identities=19% Similarity=0.172 Sum_probs=95.3
Q ss_pred CcEEEEECee----cEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCc---
Q 027435 1 MFHIVINGCN----DVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGH--- 73 (223)
Q Consensus 1 ~w~i~~~~~~----nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~--- 73 (223)
||++.+..-. +..|+|.++... +..|+|||.+.. +-+|+|||+++.||+|.+.. +++.|+||++|..+
T Consensus 343 ~~Sm~l~g~~~~~~~~~i~nyKqVGa-W~~qtDGi~ly~--nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngp 417 (582)
T PF03718_consen 343 FHSMDLYGNENDKFSMNISNYKQVGA-WYFQTDGIELYP--NSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGP 417 (582)
T ss_dssp S-SEEEESSSGGGEEEEEEEEEEE----CTT----B--T--T-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-
T ss_pred cceEEecCCccccccceeeceeeeee-EEeccCCccccC--CCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCC
Confidence 4555565333 356666666653 357999999984 66789999999999998774 69999999999743
Q ss_pred eEEEceecCCCCEEEEEEEeEEEeCcc---------eeeEEEeeC----CC-----CCeeEEeEEEEeEEEeCCCc-cEE
Q 027435 74 GISLGKEQQEAGVQNVTVTSVTFTGTQ---------NGVRIKSWG----RT-----SGGFARNILFQHALMNNVDN-PII 134 (223)
Q Consensus 74 gi~iGs~~~~~~v~nI~~~n~~~~~~~---------~gi~iks~~----g~-----~~g~v~nI~~~ni~~~~~~~-~i~ 134 (223)
-+.+|... ..++||+|+|+.+.... .+|--.+.. +. ..-.||+.+|+|+++|+.-. .++
T Consensus 418 iiq~GW~p--r~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~r 495 (582)
T PF03718_consen 418 IIQWGWTP--RNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFR 495 (582)
T ss_dssp SEE--CS-----EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEE
T ss_pred eEEeeccc--cccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEE
Confidence 35577654 56999999999999752 334222211 00 12368999999999999743 456
Q ss_pred EEeeeCCCCCCCCCCCCceEEEeEEEEeEEEEccCcceEEEe---cC---CCCceeceEEEeEEEEe
Q 027435 135 IDQNYCPDNGNCPGQASGVKISDVIYQDIHGTSATEVGVKLD---CS---SKNPCTGISLEDVKLIY 195 (223)
Q Consensus 135 i~~~y~~~~~~~~~~~~~~~i~nI~~~nI~~~~~~~~~~~i~---g~---~~~~~~ni~~~ni~i~~ 195 (223)
|...-. .....|+|+.|+...+.........+- +. ......+|.|+|.+|..
T Consensus 496 i~plqn---------~~nl~ikN~~~~~w~~~~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg 553 (582)
T PF03718_consen 496 IYPLQN---------YDNLVIKNVHFESWNGLDITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGG 553 (582)
T ss_dssp E--SEE---------EEEEEEEEEEECEET-CGCSTT-EEE---CCTTT--B--EEEEEEEEEEETT
T ss_pred EeecCC---------CcceEEEEeecccccCcccccceeeccccccccccccccccceEEEeEEECC
Confidence 653100 022445555555443332211112221 11 12347889999998853
No 18
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.76 E-value=1.7e-07 Score=85.51 Aligned_cols=174 Identities=14% Similarity=0.156 Sum_probs=103.4
Q ss_pred cEEEEECeecEEEEeEEEEcCCCCCCCceEeecCCc----cEEEEecEEec----CCcceeecCCeeeEEEEeeEEcCC-
Q 027435 2 FHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSS----GVTILDSKIGT----GDDCVSVGPGATNLWIENVACGPG- 72 (223)
Q Consensus 2 w~i~~~~~~nv~I~~v~I~~~~~~~ntDGidi~~s~----nV~I~n~~i~~----gDD~i~iks~s~nV~I~n~~~~~~- 72 (223)
|++....++++.+++++|..|+. + .+++.... +..|+|.++.. +-|++.+.. +=+|+||.++..
T Consensus 321 ~~~~~~g~q~~~~~GiTI~~pP~--~--Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~---nS~i~dcF~h~nD 393 (582)
T PF03718_consen 321 WHISANGGQTLTCEGITINDPPF--H--SMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELYP---NSTIRDCFIHVND 393 (582)
T ss_dssp EECS-SSSEEEEEES-EEE--SS-----SEEEESSSGGGEEEEEEEEEEE---CTT----B--T---T-EEEEEEEEESS
T ss_pred hhhccCCcceEEEEeeEecCCCc--c--eEEecCCccccccceeeceeeeeeEEeccCCccccC---CCeeeeeEEEecC
Confidence 56777889999999999999764 2 48887444 58889988875 579998876 557899999985
Q ss_pred ceEEEceecCCCCEEEEEEEeEEEeCcceeeEEEeeCCCCCeeEEeEEEEeEEEeCCCc---------cEEE-EeeeCCC
Q 027435 73 HGISLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDN---------PIII-DQNYCPD 142 (223)
Q Consensus 73 ~gi~iGs~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~~~---------~i~i-~~~y~~~ 142 (223)
++|.+ .-+++.++|++++..+.|--|.... ....++||+|+|+.+-..++ +|.- ...|.+-
T Consensus 394 D~iKl-------YhS~v~v~~~ViWk~~Ngpiiq~GW--~pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~ 464 (582)
T PF03718_consen 394 DAIKL-------YHSNVSVSNTVIWKNENGPIIQWGW--TPRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDM 464 (582)
T ss_dssp -SEE---------STTEEEEEEEEEE-SSS-SEE--C--S---EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-
T ss_pred chhhe-------eecCcceeeeEEEecCCCCeEEeec--cccccCceEEeeeEEEeeeeecccCCCCceeEecccccccc
Confidence 68875 1378899999999866654454222 35679999999999987642 2322 2345221
Q ss_pred CCCCCCCCCceEEEeEEEEeEEEEccCcceEEEecCCCCceeceEEEeEEEE
Q 027435 143 NGNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLI 194 (223)
Q Consensus 143 ~~~~~~~~~~~~i~nI~~~nI~~~~~~~~~~~i~g~~~~~~~ni~~~ni~i~ 194 (223)
.. .+.+.....|++++|+|++..+.-...+.|. |-...+|+.++|+.+.
T Consensus 465 ~s-~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~--plqn~~nl~ikN~~~~ 513 (582)
T PF03718_consen 465 AS-TKTADPSTTIRNMTFSNVRCEGMCPCLFRIY--PLQNYDNLVIKNVHFE 513 (582)
T ss_dssp SS-S--BEEEEEEEEEEEEEEEEECCE-ECEEE----SEEEEEEEEEEEEEC
T ss_pred cC-CCCCCcccceeeEEEEeEEEecccceeEEEe--ecCCCcceEEEEeecc
Confidence 11 1112234689999999999988755455554 3345667888888876
No 19
>smart00656 Amb_all Amb_all domain.
Probab=98.57 E-value=9.3e-07 Score=71.96 Aligned_cols=98 Identities=19% Similarity=0.257 Sum_probs=76.6
Q ss_pred cEEEEECeecEEEEeEEEEcCCC--CCCCceEeecCCccEEEEecEEecC----------CcceeecCCeeeEEEEeeEE
Q 027435 2 FHIVINGCNDVKVQGVKVSAAGE--SPNTDGIHVQSSSGVTILDSKIGTG----------DDCVSVGPGATNLWIENVAC 69 (223)
Q Consensus 2 w~i~~~~~~nv~I~~v~I~~~~~--~~ntDGidi~~s~nV~I~n~~i~~g----------DD~i~iks~s~nV~I~n~~~ 69 (223)
+.|.+..++||.|++++|+.+.. ..+.|+|.+..+++|.|++|.+..+ |..++++.++.+|+|++|+|
T Consensus 32 ~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f 111 (190)
T smart00656 32 GGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYF 111 (190)
T ss_pred eEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceE
Confidence 34677778999999999998532 2467999999999999999999986 56678888899999999999
Q ss_pred cCC-ceEEEceecCC--CCEEEEEEEeEEEeCc
Q 027435 70 GPG-HGISLGKEQQE--AGVQNVTVTSVTFTGT 99 (223)
Q Consensus 70 ~~~-~gi~iGs~~~~--~~v~nI~~~n~~~~~~ 99 (223)
... .+..+|+..+. ....+|++.++.+.+.
T Consensus 112 ~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 112 HNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNL 144 (190)
T ss_pred ecCCEEEEEccCCCccccccceEEEECcEEcCc
Confidence 764 47778874321 2245788888888653
No 20
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.53 E-value=1.7e-06 Score=75.78 Aligned_cols=89 Identities=24% Similarity=0.367 Sum_probs=55.2
Q ss_pred ECeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEe--------cCCcceeecCCeeeEEEEeeEEcCC--ceEE
Q 027435 7 NGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIG--------TGDDCVSVGPGATNLWIENVACGPG--HGIS 76 (223)
Q Consensus 7 ~~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~--------~gDD~i~iks~s~nV~I~n~~~~~~--~gi~ 76 (223)
..+++|+|++++|.+.. .+||.+..|++++|+++.+. ++.++|.+.. |++++|++|++.+. .|+.
T Consensus 60 v~a~~VtI~~ltI~~~~----~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~-s~~v~I~~n~i~g~~d~GIy 134 (314)
T TIGR03805 60 VTSDDVTLSDLAVENTK----GDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVE-STNVLVEDSYVRGASDAGIY 134 (314)
T ss_pred EEeCCeEEEeeEEEcCC----CCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEec-cCCEEEECCEEECCCcccEE
Confidence 34667777777776632 24677666677777777765 3445666655 66777777777653 2565
Q ss_pred EceecCCCCEEEEEEEeEEEeCcceeeEEE
Q 027435 77 LGKEQQEAGVQNVTVTSVTFTGTQNGVRIK 106 (223)
Q Consensus 77 iGs~~~~~~v~nI~~~n~~~~~~~~gi~ik 106 (223)
++. .++++|+|+++.+...|+.+-
T Consensus 135 v~~------s~~~~v~nN~~~~n~~GI~i~ 158 (314)
T TIGR03805 135 VGQ------SQNIVVRNNVAEENVAGIEIE 158 (314)
T ss_pred ECC------CCCeEEECCEEccCcceEEEE
Confidence 532 356666666666666666654
No 21
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.53 E-value=2e-06 Score=75.29 Aligned_cols=121 Identities=19% Similarity=0.236 Sum_probs=89.7
Q ss_pred cEEEEECeecEEEEeEEEEcCCC---CCCCceEeecCCccEEEEecEEecC-CcceeecCCeeeEEEEeeEEcCC-ceEE
Q 027435 2 FHIVINGCNDVKVQGVKVSAAGE---SPNTDGIHVQSSSGVTILDSKIGTG-DDCVSVGPGATNLWIENVACGPG-HGIS 76 (223)
Q Consensus 2 w~i~~~~~~nv~I~~v~I~~~~~---~~ntDGidi~~s~nV~I~n~~i~~g-DD~i~iks~s~nV~I~n~~~~~~-~gi~ 76 (223)
+.+.+..|++++|+++++..... ....+||.+..|++++|++++++.. |++|-++. +++++|+|++++.. .||-
T Consensus 78 ~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~-s~~~~v~nN~~~~n~~GI~ 156 (314)
T TIGR03805 78 DGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ-SQNIVVRNNVAEENVAGIE 156 (314)
T ss_pred CeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC-CCCeEEECCEEccCcceEE
Confidence 46778899999999999973211 1246799999999999999999985 55899986 89999999999876 4887
Q ss_pred EceecCCCCEEEEEEEeEEEeCcceeeEEEeeCCCCCeeEEeEEEEeEEEeCC
Q 027435 77 LGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNV 129 (223)
Q Consensus 77 iGs~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~ 129 (223)
+-. ..++.+++..+.+...|+.+-..++...-.-+++++++-++.+.
T Consensus 157 i~~------S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 157 IEN------SQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred EEe------cCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECC
Confidence 632 25677788888876778888665542112235666666666544
No 22
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.52 E-value=4.1e-06 Score=64.45 Aligned_cols=116 Identities=26% Similarity=0.418 Sum_probs=82.5
Q ss_pred EEEECeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCc-eEEEceecC
Q 027435 4 IVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGH-GISLGKEQQ 82 (223)
Q Consensus 4 i~~~~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~-gi~iGs~~~ 82 (223)
|.+..+.+++|++++|.+. ..+||.+..+..++|++|.|..+..++.+.. ..++++++|++.... |+.+
T Consensus 3 i~i~~~~~~~i~~~~i~~~----~~~gi~~~~~~~~~i~n~~i~~~~~gi~~~~-~~~~~i~~~~~~~~~~~i~~----- 72 (158)
T PF13229_consen 3 ISINNGSNVTIRNCTISNN----GGDGIHVSGSSNITIENCTISNGGYGIYVSG-GSNVTISNNTISDNGSGIYV----- 72 (158)
T ss_dssp EEETTCEC-EEESEEEESS----SSECEEE-SSCESEEES-EEESSTTSEEEEC-CES-EEES-EEES-SEEEEC-----
T ss_pred EEEECCcCeEEeeeEEEeC----CCeEEEEEcCCCeEEECeEEECCCcEEEEec-CCCeEEECeEEEEccceEEE-----
Confidence 6778889999999999984 3579999999999999999999888898887 689999999998764 5554
Q ss_pred CCCEEEEEEEeEEEeCcce-eeEEEeeCCCCCeeEEeEEEEeEEEeCCC-ccEEEEe
Q 027435 83 EAGVQNVTVTSVTFTGTQN-GVRIKSWGRTSGGFARNILFQHALMNNVD-NPIIIDQ 137 (223)
Q Consensus 83 ~~~v~nI~~~n~~~~~~~~-gi~iks~~g~~~g~v~nI~~~ni~~~~~~-~~i~i~~ 137 (223)
....+++++++.+.+... |+.++. .-+++++++.++.+.. .++++..
T Consensus 73 -~~~~~~~i~~~~i~~~~~~gi~~~~-------~~~~~~i~~n~~~~~~~~gi~~~~ 121 (158)
T PF13229_consen 73 -SGSSNITIENNRIENNGDYGIYISN-------SSSNVTIENNTIHNNGGSGIYLEG 121 (158)
T ss_dssp -CS-CS-EEES-EEECSSS-SCE-TC-------EECS-EEES-EEECCTTSSCEEEE
T ss_pred -EecCCceecCcEEEcCCCccEEEec-------cCCCEEEEeEEEEeCcceeEEEEC
Confidence 245678899999988655 787753 2334788888888876 6777765
No 23
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.34 E-value=5e-06 Score=69.85 Aligned_cols=34 Identities=15% Similarity=0.466 Sum_probs=19.6
Q ss_pred EECeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEE
Q 027435 6 INGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKI 46 (223)
Q Consensus 6 ~~~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i 46 (223)
|..|++++++|++|.+.+. -++.|++|.++|+.+
T Consensus 94 fR~~~~i~L~nv~~~~A~E-------t~W~c~~i~l~nv~~ 127 (277)
T PF12541_consen 94 FRECSNITLENVDIPDADE-------TLWNCRGIKLKNVQA 127 (277)
T ss_pred hhcccCcEEEeeEeCCCcc-------cCEEeCCeEEEeEEE
Confidence 4567777777777754321 234455566666555
No 24
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=98.34 E-value=2.3e-06 Score=70.22 Aligned_cols=97 Identities=24% Similarity=0.354 Sum_probs=69.4
Q ss_pred cEEEEE-CeecEEEEeEEEEcC-----------CCCCCCceEeecCCccEEEEecEEecC---------CcceeecCCee
Q 027435 2 FHIVIN-GCNDVKVQGVKVSAA-----------GESPNTDGIHVQSSSGVTILDSKIGTG---------DDCVSVGPGAT 60 (223)
Q Consensus 2 w~i~~~-~~~nv~I~~v~I~~~-----------~~~~ntDGidi~~s~nV~I~n~~i~~g---------DD~i~iks~s~ 60 (223)
+.+.+. .++||.|+|++|... ......|+|.+..++||.|++|.+..+ |..++++.++.
T Consensus 37 ~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~ 116 (200)
T PF00544_consen 37 GGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSD 116 (200)
T ss_dssp SEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTE
T ss_pred ceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCc
Confidence 345565 899999999999982 123567999999999999999999976 55688888899
Q ss_pred eEEEEeeEEcCC-ceEEEceec---CCCCEEEEEEEeEEEeCc
Q 027435 61 NLWIENVACGPG-HGISLGKEQ---QEAGVQNVTVTSVTFTGT 99 (223)
Q Consensus 61 nV~I~n~~~~~~-~gi~iGs~~---~~~~v~nI~~~n~~~~~~ 99 (223)
+|+|++|.|... .+..+|+.. ...+ .+|++..+.+.+.
T Consensus 117 ~vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 117 NVTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp EEEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred eEEEEchhccccccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 999999999864 356677751 1234 8888888888653
No 25
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.28 E-value=1.1e-05 Score=69.05 Aligned_cols=98 Identities=18% Similarity=0.230 Sum_probs=68.2
Q ss_pred cEEEEECeecEEEEeEEEEcCC-CCCCCceEee-cCCccEEEEecEEec---------CCcceeecCCeeeEEEEeeEEc
Q 027435 2 FHIVINGCNDVKVQGVKVSAAG-ESPNTDGIHV-QSSSGVTILDSKIGT---------GDDCVSVGPGATNLWIENVACG 70 (223)
Q Consensus 2 w~i~~~~~~nv~I~~v~I~~~~-~~~ntDGidi-~~s~nV~I~n~~i~~---------gDD~i~iks~s~nV~I~n~~~~ 70 (223)
|-|.+.+.+||.|+|++|.... +-|+-|+|.+ ..++|+.|++|++.. +|..+.+|-++..|+|+++++.
T Consensus 117 ~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fh 196 (345)
T COG3866 117 GGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFH 196 (345)
T ss_pred ceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeee
Confidence 5677777888888888888633 2234477887 677888888888876 3566778777888888888887
Q ss_pred CCc-eEEEceecC---CCCEEEEEEEeEEEeCc
Q 027435 71 PGH-GISLGKEQQ---EAGVQNVTVTSVTFTGT 99 (223)
Q Consensus 71 ~~~-gi~iGs~~~---~~~v~nI~~~n~~~~~~ 99 (223)
..+ ++-+|+..+ ..+-.+|++.++.|.+.
T Consensus 197 dh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 197 DHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred cCCeeeeeccCCcccccCCceeEEEeccccccc
Confidence 653 666776432 13456777777777663
No 26
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.13 E-value=3.7e-05 Score=59.08 Aligned_cols=93 Identities=31% Similarity=0.496 Sum_probs=63.3
Q ss_pred ceEeecCCccEEEEecEEec-CCcceeecCCeeeEEEEeeEEcCC-ceEEEceecCCCCEEEEEEEeEEEeCcceeeEEE
Q 027435 29 DGIHVQSSSGVTILDSKIGT-GDDCVSVGPGATNLWIENVACGPG-HGISLGKEQQEAGVQNVTVTSVTFTGTQNGVRIK 106 (223)
Q Consensus 29 DGidi~~s~nV~I~n~~i~~-gDD~i~iks~s~nV~I~n~~~~~~-~gi~iGs~~~~~~v~nI~~~n~~~~~~~~gi~ik 106 (223)
|||.+..+.+++|++|.|.. +.++|.+.. +..++|+||++..+ .|+.+.. -.+++++++.+.+...|+.+.
T Consensus 1 ~Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~-~~~~~i~n~~i~~~~~gi~~~~------~~~~~i~~~~~~~~~~~i~~~ 73 (158)
T PF13229_consen 1 DGISINNGSNVTIRNCTISNNGGDGIHVSG-SSNITIENCTISNGGYGIYVSG------GSNVTISNNTISDNGSGIYVS 73 (158)
T ss_dssp -CEEETTCEC-EEESEEEESSSSECEEE-S-SCESEEES-EEESSTTSEEEEC------CES-EEES-EEES-SEEEECC
T ss_pred CEEEEECCcCeEEeeeEEEeCCCeEEEEEc-CCCeEEECeEEECCCcEEEEec------CCCeEEECeEEEEccceEEEE
Confidence 68999999999999999998 789999987 66789999999984 6888732 278899999998876555543
Q ss_pred eeCCCCCeeEEeEEEEeEEEeCCCc-cEEEE
Q 027435 107 SWGRTSGGFARNILFQHALMNNVDN-PIIID 136 (223)
Q Consensus 107 s~~g~~~g~v~nI~~~ni~~~~~~~-~i~i~ 136 (223)
. -.+++++++++.+... ++++.
T Consensus 74 --~------~~~~~i~~~~i~~~~~~gi~~~ 96 (158)
T PF13229_consen 74 --G------SSNITIENNRIENNGDYGIYIS 96 (158)
T ss_dssp --S-------CS-EEES-EEECSSS-SCE-T
T ss_pred --e------cCCceecCcEEEcCCCccEEEe
Confidence 1 2345777777777654 66655
No 27
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.10 E-value=1.4e-05 Score=67.24 Aligned_cols=104 Identities=21% Similarity=0.280 Sum_probs=73.7
Q ss_pred EECeecEEEEeEEEEcCCCCC-----CCceE------eecCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCce
Q 027435 6 INGCNDVKVQGVKVSAAGESP-----NTDGI------HVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHG 74 (223)
Q Consensus 6 ~~~~~nv~I~~v~I~~~~~~~-----ntDGi------di~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~g 74 (223)
+..|++|+++|+++....-.. --||+ -+.+|+||.|+|+.+.+.| |+-. |+||+|.|+.+.+
T Consensus 114 ~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKD---AFWn-~eNVtVyDS~i~G--- 186 (277)
T PF12541_consen 114 LWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKD---AFWN-CENVTVYDSVING--- 186 (277)
T ss_pred CEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEeccc---cccc-CCceEEEcceEee---
Confidence 467888888888885431111 11222 3457899999999999886 4554 8999999999873
Q ss_pred EEEceecCCCCEEEEEEEeEEEeCcceeeEEEeeCCCCCeeEEeEEEEeEEEeCCCcc
Q 027435 75 ISLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNP 132 (223)
Q Consensus 75 i~iGs~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~~~~ 132 (223)
=-||-.+ +|+++-||++.+.. | --+++|++.+|++|.+...+
T Consensus 187 EYLgW~S-----kNltliNC~I~g~Q-p----------LCY~~~L~l~nC~~~~tdla 228 (277)
T PF12541_consen 187 EYLGWNS-----KNLTLINCTIEGTQ-P----------LCYCDNLVLENCTMIDTDLA 228 (277)
T ss_pred eEEEEEc-----CCeEEEEeEEeccC-c----------cEeecceEEeCcEeecceee
Confidence 2344433 89999999987642 3 36888999999999977644
No 28
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.89 E-value=0.00027 Score=59.01 Aligned_cols=67 Identities=24% Similarity=0.275 Sum_probs=32.7
Q ss_pred EEECeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCC-ceEEE
Q 027435 5 VINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPG-HGISL 77 (223)
Q Consensus 5 ~~~~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~-~gi~i 77 (223)
.+..+++..|++.++... .||+.+..+.+++|+++.|.....+|.+.. +++++|+++++... .|+.+
T Consensus 17 ~l~~~~~~~i~~n~i~~~-----~~gi~~~~s~~~~I~~n~i~~~~~GI~~~~-s~~~~i~~n~i~~n~~Gi~l 84 (236)
T PF05048_consen 17 YLWNSSNNSIENNTISNS-----RDGIYVENSDNNTISNNTISNNRYGIHLMG-SSNNTIENNTISNNGYGIYL 84 (236)
T ss_pred EEEeCCCCEEEcCEEEeC-----CCEEEEEEcCCeEEEeeEEECCCeEEEEEc-cCCCEEEeEEEEccCCCEEE
Confidence 344445555555554442 245555555555555555555545555543 44455555555442 34443
No 29
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.80 E-value=0.00038 Score=58.07 Aligned_cols=111 Identities=23% Similarity=0.232 Sum_probs=79.9
Q ss_pred EEEECeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCC-ceEEEceecC
Q 027435 4 IVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPG-HGISLGKEQQ 82 (223)
Q Consensus 4 i~~~~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~-~gi~iGs~~~ 82 (223)
+.+..+.+++|++.+|... ..||.+..|++++|+++.+.....+|.+.. +.+.+|+++++... .||.+..
T Consensus 38 i~~~~s~~~~I~~n~i~~~-----~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~-s~~~~I~~N~i~~n~~GI~l~~--- 108 (236)
T PF05048_consen 38 IYVENSDNNTISNNTISNN-----RYGIHLMGSSNNTIENNTISNNGYGIYLMG-SSNNTISNNTISNNGYGIYLYG--- 108 (236)
T ss_pred EEEEEcCCeEEEeeEEECC-----CeEEEEEccCCCEEEeEEEEccCCCEEEEc-CCCcEEECCEecCCCceEEEee---
Confidence 4567788888888888873 458888888888888888888778888887 55558888888764 5777632
Q ss_pred CCCEEEEEEEeEEEeCcceeeEEEeeCCCCCeeEEeEEEEeEEEeCC-CccEE
Q 027435 83 EAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNV-DNPII 134 (223)
Q Consensus 83 ~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~-~~~i~ 134 (223)
..+.++++.++.+...||.|... .+.++++-++.+. ..+|+
T Consensus 109 ---s~~~~I~~N~i~~~~~GI~l~~s--------~~n~I~~N~i~~n~~~Gi~ 150 (236)
T PF05048_consen 109 ---SSNNTISNNTISNNGYGIYLSSS--------SNNTITGNTISNNTDYGIY 150 (236)
T ss_pred ---CCceEEECcEEeCCCEEEEEEeC--------CCCEEECeEEeCCCccceE
Confidence 24467788888777778877533 2335555556555 66777
No 30
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.78 E-value=0.0016 Score=53.19 Aligned_cols=45 Identities=27% Similarity=0.566 Sum_probs=34.1
Q ss_pred EEEEeEEEEcCCCCC--CCceEeecCCccEEEEecEEec-CCcceeec
Q 027435 12 VKVQGVKVSAAGESP--NTDGIHVQSSSGVTILDSKIGT-GDDCVSVG 56 (223)
Q Consensus 12 v~I~~v~I~~~~~~~--ntDGidi~~s~nV~I~n~~i~~-gDD~i~ik 56 (223)
+.|+|++|..+...+ ...|+.+..+++++|+||.+.. +.+++.+.
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~ 141 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSGGDGIYFN 141 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-SS-SEEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEccCccEEEEE
Confidence 459999999865433 2478999999999999999986 46666665
No 31
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=97.73 E-value=0.00057 Score=58.71 Aligned_cols=118 Identities=16% Similarity=0.268 Sum_probs=86.8
Q ss_pred EEEECeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEecC------CcceeecCCeeeEEEEeeEEcCC-----
Q 027435 4 IVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTG------DDCVSVGPGATNLWIENVACGPG----- 72 (223)
Q Consensus 4 i~~~~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~g------DD~i~iks~s~nV~I~n~~~~~~----- 72 (223)
+.+.-|.|++|-++-=... ...-|+-+...+||.|+|+.|.-- +|+|.|..+.+||.|.+|++..+
T Consensus 95 ~~iki~sNkTivG~g~~a~---~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~ 171 (345)
T COG3866 95 ITIKIGSNKTIVGSGADAT---LVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNAS 171 (345)
T ss_pred EEEeeccccEEEeeccccE---EEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEecccccccc
Confidence 3455666777666542221 123378898889999999999852 59999965599999999999862
Q ss_pred ----ceEE-EceecCCCCEEEEEEEeEEEeCcceeeEEEeeCCC-CCeeEEeEEEEeEEEeCC
Q 027435 73 ----HGIS-LGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRT-SGGFARNILFQHALMNNV 129 (223)
Q Consensus 73 ----~gi~-iGs~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~-~~g~v~nI~~~ni~~~~~ 129 (223)
+|+. |+ .+...|+|+++.+.+...++-+++.+.. ..+.-.+|||.+...++.
T Consensus 172 ~~h~DGl~Dik-----~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 172 GSHGDGLVDIK-----KDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred ccCCCccEEec-----cCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccc
Confidence 3554 64 3457899999999999888888876431 124467888888888887
No 32
>smart00656 Amb_all Amb_all domain.
Probab=97.66 E-value=0.00052 Score=55.82 Aligned_cols=94 Identities=20% Similarity=0.343 Sum_probs=70.7
Q ss_pred eEeecCCccEEEEecEEecC-------CcceeecCCeeeEEEEeeEEcCC----------ceEE-EceecCCCCEEEEEE
Q 027435 30 GIHVQSSSGVTILDSKIGTG-------DDCVSVGPGATNLWIENVACGPG----------HGIS-LGKEQQEAGVQNVTV 91 (223)
Q Consensus 30 Gidi~~s~nV~I~n~~i~~g-------DD~i~iks~s~nV~I~n~~~~~~----------~gi~-iGs~~~~~~v~nI~~ 91 (223)
|+.+..++||.|+|+.|+.. .|+|.+.. +++|.|..|++..+ +++. +. ....+|++
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~-~~~VwIDHct~s~~~~~~~~~~~~D~~~di~-----~~s~~vTv 106 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDG-SSNVWIDHVSLSGCTVTGFGDDTYDGLIDIK-----NGSTYVTI 106 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeC-CCeEEEEccEeEcceeccCCCCCCCccEEEC-----cccccEEE
Confidence 68888789999999999973 47898865 89999999999876 2332 32 35689999
Q ss_pred EeEEEeCcceeeEEEeeCCCCCeeEEeEEEEeEEEeCC
Q 027435 92 TSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNV 129 (223)
Q Consensus 92 ~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~ 129 (223)
++|.|.+...++-+++..........+|||.+..+.+.
T Consensus 107 s~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 107 SNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNL 144 (190)
T ss_pred ECceEecCCEEEEEccCCCccccccceEEEECcEEcCc
Confidence 99999988888888765331222355777777777664
No 33
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.43 E-value=0.01 Score=48.33 Aligned_cols=103 Identities=21% Similarity=0.344 Sum_probs=57.5
Q ss_pred EEEEecEEecCC-------cceeecCCeeeEEEEeeEEcCC--ceEEEceecC----CC-CEEEEEEEe---------EE
Q 027435 39 VTILDSKIGTGD-------DCVSVGPGATNLWIENVACGPG--HGISLGKEQQ----EA-GVQNVTVTS---------VT 95 (223)
Q Consensus 39 V~I~n~~i~~gD-------D~i~iks~s~nV~I~n~~~~~~--~gi~iGs~~~----~~-~v~nI~~~n---------~~ 95 (223)
+.|+|+.|.... .++.+.. +++++|+||.+... +|+.+..... .. ..+++.+++ +.
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~-~~~~~i~nv~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNS-SQNVSISNVRIENSGGDGIYFNTGTDYRIIGSTHVSGIFIDNGSNNVIVNNCI 172 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETT-EEEEEEEEEEEES-SS-SEEEECCEECEEECCEEEEEEEEESCEEEEEEECEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEe-CCeEEEEeEEEEccCccEEEEEccccCcEeecccceeeeeccceeEEEECCcc
Confidence 459999998754 3455555 89999999999863 5777542110 01 122444433 22
Q ss_pred EeCcceeeEEEeeCCCCCeeEEeEEEEeEEEeC-CCccEEEEeeeCCCCCCCCCCCCceEEEeEEEEeE
Q 027435 96 FTGTQNGVRIKSWGRTSGGFARNILFQHALMNN-VDNPIIIDQNYCPDNGNCPGQASGVKISDVIYQDI 163 (223)
Q Consensus 96 ~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~-~~~~i~i~~~y~~~~~~~~~~~~~~~i~nI~~~nI 163 (223)
+.....|+.. +. ++++++|+.+++ ...++.+... ....++|++|+|.
T Consensus 173 ~~~~~~g~~~--------~~-~~~~i~n~~~~~~~~~gi~i~~~------------~~~~i~n~~i~~~ 220 (225)
T PF12708_consen 173 FNGGDNGIIL--------GN-NNITISNNTFEGNCGNGINIEGG------------SNIIISNNTIENC 220 (225)
T ss_dssp EESSSCSEEC--------EE-EEEEEECEEEESSSSESEEEEEC------------SEEEEEEEEEESS
T ss_pred ccCCCceeEe--------ec-ceEEEEeEEECCccceeEEEECC------------eEEEEEeEEEECC
Confidence 2222222100 00 678888888877 4567776642 2245666666654
No 34
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.40 E-value=0.005 Score=55.93 Aligned_cols=54 Identities=19% Similarity=0.338 Sum_probs=32.9
Q ss_pred EECeecEEEEeEEEEcCCCC--CCCceEeecCCccEEEEecEEecCC-cceeecCCee
Q 027435 6 INGCNDVKVQGVKVSAAGES--PNTDGIHVQSSSGVTILDSKIGTGD-DCVSVGPGAT 60 (223)
Q Consensus 6 ~~~~~nv~I~~v~I~~~~~~--~ntDGidi~~s~nV~I~n~~i~~gD-D~i~iks~s~ 60 (223)
-...++|+|++++|++.... .-.-||.+..|++++|++|.|...- -+|-+.. ++
T Consensus 111 ai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~-~~ 167 (455)
T TIGR03808 111 SEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIWLET-VS 167 (455)
T ss_pred EecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcceEEEEc-Cc
Confidence 34566777777777764321 1112667777777777777777652 5566654 44
No 35
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=96.95 E-value=0.039 Score=50.30 Aligned_cols=69 Identities=20% Similarity=0.282 Sum_probs=48.4
Q ss_pred EEEEECeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEe-cCCcceeecCCeeeEEEEeeEEcCC-c-eEEE
Q 027435 3 HIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIG-TGDDCVSVGPGATNLWIENVACGPG-H-GISL 77 (223)
Q Consensus 3 ~i~~~~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~-~gDD~i~iks~s~nV~I~n~~~~~~-~-gi~i 77 (223)
-|.+..|++++|++++|.++.. -||.+..|+ ..|.+..|. ..+..|.+.. +++.+|++.++... + ||.+
T Consensus 137 gI~v~~a~~v~Iedn~L~gsg~----FGI~L~~~~-~~I~~N~I~g~~~~~I~lw~-S~g~~V~~N~I~g~RD~gi~i 208 (455)
T TIGR03808 137 LIHCQGGRDVRITDCEITGSGG----NGIWLETVS-GDISGNTITQIAVTAIVSFD-ALGLIVARNTIIGANDNGIEI 208 (455)
T ss_pred EEEEccCCceEEEeeEEEcCCc----ceEEEEcCc-ceEecceEeccccceEEEec-cCCCEEECCEEEccCCCCeEE
Confidence 4667788888888888887521 378888888 555555555 4566677765 78888888888763 3 5553
No 36
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=96.93 E-value=0.0036 Score=51.28 Aligned_cols=92 Identities=25% Similarity=0.489 Sum_probs=64.0
Q ss_pred eEeec-CCccEEEEecEEec----------------CCcceeecCCeeeEEEEeeEEcCC---------ce-EEEceecC
Q 027435 30 GIHVQ-SSSGVTILDSKIGT----------------GDDCVSVGPGATNLWIENVACGPG---------HG-ISLGKEQQ 82 (223)
Q Consensus 30 Gidi~-~s~nV~I~n~~i~~----------------gDD~i~iks~s~nV~I~n~~~~~~---------~g-i~iGs~~~ 82 (223)
|+.+. .++||.|+|..|+. +.|+|.+.. ++||.|..|++..+ +| +.+.
T Consensus 38 G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~-~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~---- 112 (200)
T PF00544_consen 38 GLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDN-SSNVWIDHCSFSWGNFECNSDSSDGLIDIK---- 112 (200)
T ss_dssp EEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEES-TEEEEEES-EEEETTS-GGGSSSSSSEEEE----
T ss_pred eEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEe-cccEEEeccEEeccccccccccCCceEEEE----
Confidence 78876 89999999999997 569999985 78999999999755 34 3343
Q ss_pred CCCEEEEEEEeEEEeCcceeeEEEeeCCC--CCeeEEeEEEEeEEEeCC
Q 027435 83 EAGVQNVTVTSVTFTGTQNGVRIKSWGRT--SGGFARNILFQHALMNNV 129 (223)
Q Consensus 83 ~~~v~nI~~~n~~~~~~~~gi~iks~~g~--~~g~v~nI~~~ni~~~~~ 129 (223)
....+|++++|.|.+...+.-+++.+.. ..+ .+|||-.....+.
T Consensus 113 -~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~--~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 113 -KGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRG--LRVTFHHNYFANT 158 (200)
T ss_dssp -SSTEEEEEES-EEEEEEETCEESSCTTCGGGTT--EEEEEES-EEEEE
T ss_pred -eCCceEEEEchhccccccccccCCCCCccccCC--ceEEEEeEEECch
Confidence 3458999999999987777667654321 123 7777777666654
No 37
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=93.98 E-value=0.74 Score=41.75 Aligned_cols=45 Identities=27% Similarity=0.403 Sum_probs=29.6
Q ss_pred eeEEEEeeEEcCCceEEEceecCCCCEEEEEEEeEEEeCcceeeEEEee
Q 027435 60 TNLWIENVACGPGHGISLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSW 108 (223)
Q Consensus 60 ~nV~I~n~~~~~~~gi~iGs~~~~~~v~nI~~~n~~~~~~~~gi~iks~ 108 (223)
.|=+|+|...+.+.|+-+|.....+.++||++++|. ..|+.+++.
T Consensus 311 tnHiidNi~~~~~lGVG~~~DG~~~yvsni~~~d~~----g~G~~~~~~ 355 (549)
T PF09251_consen 311 TNHIIDNILVRGSLGVGIGMDGKGGYVSNITVQDCA----GAGIFIRGT 355 (549)
T ss_dssp ---EEEEEEEES-SSESCEEECCS-EEEEEEEES-S----SESEEEECC
T ss_pred hhhhhhhhheeccceeeeeecCCCceEeeEEeeccc----CCceEEeec
Confidence 577889998888888887776655668888888874 457777655
No 38
>PLN02773 pectinesterase
Probab=93.04 E-value=4 Score=35.91 Aligned_cols=112 Identities=7% Similarity=0.129 Sum_probs=60.9
Q ss_pred CeecEEEEeEEEEcCCCCCCCceEee-cCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceecCCCCE
Q 027435 8 GCNDVKVQGVKVSAAGESPNTDGIHV-QSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQQEAGV 86 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~~ntDGidi-~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~~~~~v 86 (223)
.++++..+||+|.|...........+ ...+.+.+++|.|...-|-+-.+. -.-.++||++.+.-=+-+|.
T Consensus 100 ~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~--gr~yf~~c~IeG~VDFIFG~------- 170 (317)
T PLN02773 100 EGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHY--GKQYLRDCYIEGSVDFIFGN------- 170 (317)
T ss_pred ECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCC--CCEEEEeeEEeecccEEeec-------
Confidence 46788889999988532111223332 135788888888887667655543 24677777777542233443
Q ss_pred EEEEEEeEEEeCcceeeEEEeeCCCCCeeEEeEEEEeEEEeCC
Q 027435 87 QNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNV 129 (223)
Q Consensus 87 ~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~ 129 (223)
-...|++|.+.....| .|-.........-....|.|+++...
T Consensus 171 g~a~Fe~c~i~s~~~g-~ITA~~r~~~~~~~GfvF~~c~it~~ 212 (317)
T PLN02773 171 STALLEHCHIHCKSAG-FITAQSRKSSQESTGYVFLRCVITGN 212 (317)
T ss_pred cEEEEEeeEEEEccCc-EEECCCCCCCCCCceEEEEccEEecC
Confidence 2246777777543333 23211110001112356777777664
No 39
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=92.27 E-value=0.2 Score=43.24 Aligned_cols=38 Identities=18% Similarity=0.150 Sum_probs=17.1
Q ss_pred CEEEEEEEeEEEeCcceeeEEEeeCCCCCeeEEeEEEEeEE
Q 027435 85 GVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHAL 125 (223)
Q Consensus 85 ~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~ 125 (223)
.++|..+-|++=.+...-+.+ +.| ..-.|+||..+||+
T Consensus 244 ~vknfvvanitgs~crqlvhv--eng-khfvirnvkaknit 281 (464)
T PRK10123 244 AVKNFVVANITGSDCRQLIHV--ENG-KHFVIRNIKAKNIT 281 (464)
T ss_pred hhhhEEEEeccCcChhheEEe--cCC-cEEEEEeeeccccC
Confidence 366666666654443333322 222 22344555554444
No 40
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=91.76 E-value=0.26 Score=29.85 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=17.4
Q ss_pred eEeecCCccEEEEecEEecCCcceeecCCeeeEEEEeeEE
Q 027435 30 GIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVAC 69 (223)
Q Consensus 30 Gidi~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~ 69 (223)
||.++.|.+.+|++..|....|+|.+.. +.+-+|++.++
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~-s~~n~i~~N~~ 39 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD-SSNNTLSNNTA 39 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe-CCCCEeECCEE
Confidence 3444444444455555544444444443 33334443333
No 41
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=90.65 E-value=8.8 Score=31.85 Aligned_cols=129 Identities=18% Similarity=0.260 Sum_probs=67.9
Q ss_pred ecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEec-CCcceeecCCeeeEEEEeeEEcCC-c-eEEEceecCCCCE
Q 027435 10 NDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGT-GDDCVSVGPGATNLWIENVACGPG-H-GISLGKEQQEAGV 86 (223)
Q Consensus 10 ~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~-gDD~i~iks~s~nV~I~n~~~~~~-~-gi~iGs~~~~~~v 86 (223)
+..+++|+.|-.+ -.||||... +.+|+|+.... +.|++.+|+.+..++|.+.-...+ + =+.. - +.
T Consensus 61 ~GatlkNvIiG~~----~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~---N--g~- 128 (215)
T PF03211_consen 61 DGATLKNVIIGAN----QADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQH---N--GG- 128 (215)
T ss_dssp TTEEEEEEEETSS-----TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEEEE------SS-
T ss_pred CCCEEEEEEEcCC----CcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCCCccEEEe---c--Cc-
Confidence 3567778777442 458899887 67888888876 789999988544555555444332 1 1212 1 11
Q ss_pred EEEEEEeEEEeCcceeeEEEeeCC-C-CCeeEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCceEEEeEEEEe
Q 027435 87 QNVTVTSVTFTGTQNGVRIKSWGR-T-SGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISDVIYQD 162 (223)
Q Consensus 87 ~nI~~~n~~~~~~~~gi~iks~~g-~-~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nI~~~n 162 (223)
-.+.|+|....+ .|--..|-.. . .++.=|.|.+++........-.-|...|++ ...|+++.++.
T Consensus 129 Gtv~I~nF~a~d--~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD----------~ati~~~~~~~ 194 (215)
T PF03211_consen 129 GTVTIKNFYAED--FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGD----------TATISNSCIKG 194 (215)
T ss_dssp EEEEEEEEEEEE--EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTT----------TEEEEEEEEEE
T ss_pred eeEEEEeEEEcC--CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCC----------eEEEEEEEecC
Confidence 246666654443 2322233211 0 113445666666655443333455566554 45677766665
No 42
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=90.22 E-value=10 Score=32.07 Aligned_cols=99 Identities=14% Similarity=0.191 Sum_probs=68.5
Q ss_pred EeecCCccEEEEecEEecCCc----ceeecCCeeeEEEEeeEEcC--CceEEE-ceecCCCCEEEEEEEeEEEeCcceee
Q 027435 31 IHVQSSSGVTILDSKIGTGDD----CVSVGPGATNLWIENVACGP--GHGISL-GKEQQEAGVQNVTVTSVTFTGTQNGV 103 (223)
Q Consensus 31 idi~~s~nV~I~n~~i~~gDD----~i~iks~s~nV~I~n~~~~~--~~gi~i-Gs~~~~~~v~nI~~~n~~~~~~~~gi 103 (223)
+-+....+..|+..+|.+.+. +|.+.+ + +.+|+||+|.. .+|+.+ |+.. ...+.++.|+...+.....|+
T Consensus 91 ~tI~~~~~~~i~GvtItN~n~~~g~Gi~Ies-s-~~tI~Nntf~~~~~~GI~v~g~~~-~~~i~~~vI~GN~~~~~~~Gi 167 (246)
T PF07602_consen 91 VTIILANNATISGVTITNPNIARGTGIWIES-S-SPTIANNTFTNNGREGIFVTGTSA-NPGINGNVISGNSIYFNKTGI 167 (246)
T ss_pred EEEEecCCCEEEEEEEEcCCCCcceEEEEec-C-CcEEEeeEEECCccccEEEEeeec-CCcccceEeecceEEecCcCe
Confidence 445556788889999998754 677765 4 99999999987 358875 4322 357888999999998888899
Q ss_pred EEEeeCCCCCeeEEeEEEEeEEEeCCCccEEEEe
Q 027435 104 RIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQ 137 (223)
Q Consensus 104 ~iks~~g~~~g~v~nI~~~ni~~~~~~~~i~i~~ 137 (223)
.+..... + +.+ .++|-.+++-..+|.+..
T Consensus 168 ~i~~~~~---~-~~n-~I~NN~I~~N~~Gi~~~~ 196 (246)
T PF07602_consen 168 SISDNAA---P-VEN-KIENNIIENNNIGIVAIG 196 (246)
T ss_pred EEEcccC---C-ccc-eeeccEEEeCCcCeEeec
Confidence 8875543 3 222 335555555555777654
No 43
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=90.08 E-value=0.72 Score=27.79 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=34.2
Q ss_pred EEEECeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEec
Q 027435 4 IVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGT 48 (223)
Q Consensus 4 i~~~~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~ 48 (223)
|.+..|.+.+|++-+|.. +.|||.+..|.+-+|++..+..
T Consensus 2 I~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 2 IYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred EEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEEc
Confidence 678888999999999987 5679999999999999888764
No 44
>PLN02480 Probable pectinesterase
Probab=90.05 E-value=8.8 Score=34.17 Aligned_cols=82 Identities=4% Similarity=0.037 Sum_probs=46.8
Q ss_pred CeecEEEEeEEEEcCCC-----CCCCceEee-cCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceec
Q 027435 8 GCNDVKVQGVKVSAAGE-----SPNTDGIHV-QSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQ 81 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~-----~~ntDGidi-~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~ 81 (223)
..++++++||+|.|... ....-++-+ ...+.+.+++|.|...-|-+-... -.-.++||++.+.-=+-+|.
T Consensus 130 ~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~--gR~yf~~C~IeG~VDFIFG~-- 205 (343)
T PLN02480 130 EAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK--GRHYYHSCYIQGSIDFIFGR-- 205 (343)
T ss_pred ECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC--CCEEEEeCEEEeeeeEEccc--
Confidence 45678888888888521 112234554 356888888888887656443332 24566666666432222332
Q ss_pred CCCCEEEEEEEeEEEeC
Q 027435 82 QEAGVQNVTVTSVTFTG 98 (223)
Q Consensus 82 ~~~~v~nI~~~n~~~~~ 98 (223)
-...|+||.+..
T Consensus 206 -----g~a~fe~C~i~s 217 (343)
T PLN02480 206 -----GRSIFHNCEIFV 217 (343)
T ss_pred -----eeEEEEccEEEE
Confidence 234666666654
No 45
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=89.28 E-value=4.3 Score=34.41 Aligned_cols=98 Identities=21% Similarity=0.287 Sum_probs=64.8
Q ss_pred EEEECeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEec-CCcceeecC-----CeeeEEEEeeEEcC-CceEE
Q 027435 4 IVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGT-GDDCVSVGP-----GATNLWIENVACGP-GHGIS 76 (223)
Q Consensus 4 i~~~~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~-gDD~i~iks-----~s~nV~I~n~~~~~-~~gi~ 76 (223)
+.+....+.+|++++|.++... -.=|+.+.++ +.+|+|++|.. .-++|.+.. ...++.|++..++. ..|++
T Consensus 91 ~tI~~~~~~~i~GvtItN~n~~-~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~ 168 (246)
T PF07602_consen 91 VTIILANNATISGVTITNPNIA-RGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTGIS 168 (246)
T ss_pred EEEEecCCCEEEEEEEEcCCCC-cceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcCeE
Confidence 3455677889999999997321 2237888876 99999999997 456776532 24667777777765 46888
Q ss_pred EceecCCCCEEEEEEEeEEEeCcceeeEEE
Q 027435 77 LGKEQQEAGVQNVTVTSVTFTGTQNGVRIK 106 (223)
Q Consensus 77 iGs~~~~~~v~nI~~~n~~~~~~~~gi~ik 106 (223)
+-... .+++| .++|..+.+...||.+.
T Consensus 169 i~~~~--~~~~n-~I~NN~I~~N~~Gi~~~ 195 (246)
T PF07602_consen 169 ISDNA--APVEN-KIENNIIENNNIGIVAI 195 (246)
T ss_pred EEccc--CCccc-eeeccEEEeCCcCeEee
Confidence 64333 23333 34666666555577654
No 46
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=88.90 E-value=16 Score=32.45 Aligned_cols=69 Identities=19% Similarity=0.373 Sum_probs=53.5
Q ss_pred cEEEEECeecEEEEeEEEEcCCC---CCCCceEeecCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcC
Q 027435 2 FHIVINGCNDVKVQGVKVSAAGE---SPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGP 71 (223)
Q Consensus 2 w~i~~~~~~nv~I~~v~I~~~~~---~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~ 71 (223)
+-+.+..+.++.|++.+|....+ ..-..||.++.+..+.|..-.|.=+-|||-.+. +++-.|++..+..
T Consensus 121 ~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~-S~~~~~~gnr~~~ 192 (408)
T COG3420 121 FGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDT-SQHNVFKGNRFRD 192 (408)
T ss_pred eEEEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcc-cccceecccchhh
Confidence 35678888999999999987433 235568999999999999999999999998876 6666666655543
No 47
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=88.67 E-value=11 Score=35.68 Aligned_cols=113 Identities=10% Similarity=0.143 Sum_probs=62.3
Q ss_pred CeecEEEEeEEEEcCCCCCCCceEee-cCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceecCCCCE
Q 027435 8 GCNDVKVQGVKVSAAGESPNTDGIHV-QSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQQEAGV 86 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~~ntDGidi-~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~~~~~v 86 (223)
..+++..+|++|.|.........+.+ ..++.+.+++|.|...-|-+-..+ ..-.+++|++.+.-=+-+|.
T Consensus 328 ~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~--~rq~y~~C~I~GtVDFIFG~------- 398 (553)
T PLN02708 328 LGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHS--LRQFYKSCRIQGNVDFIFGN------- 398 (553)
T ss_pred EcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCC--CceEEEeeEEeecCCEEecC-------
Confidence 45677888888887542212233433 235778888888887666555443 24567888887653344443
Q ss_pred EEEEEEeEEEeCcc------e--eeEEEeeCCCCCeeEEeEEEEeEEEeCC
Q 027435 87 QNVTVTSVTFTGTQ------N--GVRIKSWGRTSGGFARNILFQHALMNNV 129 (223)
Q Consensus 87 ~nI~~~n~~~~~~~------~--gi~iks~~g~~~g~v~nI~~~ni~~~~~ 129 (223)
-...|+||.+.-.. . .-.|-.........-..+.|.|+++...
T Consensus 399 a~avfq~c~i~~~~~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~C~it~~ 449 (553)
T PLN02708 399 SAAVFQDCAILIAPRQLKPEKGENNAVTAHGRTDPAQSTGFVFQNCLINGT 449 (553)
T ss_pred ceEEEEccEEEEeccccCCCCCCceEEEeCCCCCCCCCceEEEEccEEecC
Confidence 24577888776321 0 1122221110112233577888888664
No 48
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=87.58 E-value=11 Score=35.57 Aligned_cols=83 Identities=5% Similarity=0.044 Sum_probs=49.3
Q ss_pred ECeecEEEEeEEEEcCCCCCCCceEee-cCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceecCCCC
Q 027435 7 NGCNDVKVQGVKVSAAGESPNTDGIHV-QSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQQEAG 85 (223)
Q Consensus 7 ~~~~nv~I~~v~I~~~~~~~ntDGidi-~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~~~~~ 85 (223)
...+++..+|++|.|.........+.+ ...+.+.+++|.|...-|-+-..+ ..-.++||++.+.-=+-+|.
T Consensus 316 v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~--~rqyy~~C~I~GtVDFIFG~------ 387 (537)
T PLN02506 316 VSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHS--LRQFYRECEIYGTIDFIFGN------ 387 (537)
T ss_pred EEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecC--CceEEEeeEEecccceEccC------
Confidence 346678888888888543222233333 235788888888887666554443 23577777777653333443
Q ss_pred EEEEEEEeEEEeC
Q 027435 86 VQNVTVTSVTFTG 98 (223)
Q Consensus 86 v~nI~~~n~~~~~ 98 (223)
-...|+||.+..
T Consensus 388 -a~avfq~C~i~~ 399 (537)
T PLN02506 388 -GAAVLQNCKIYT 399 (537)
T ss_pred -ceeEEeccEEEE
Confidence 224667777754
No 49
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=86.86 E-value=9.9 Score=34.30 Aligned_cols=80 Identities=9% Similarity=0.076 Sum_probs=46.6
Q ss_pred ecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCC-ceEEEceecCCCCEEE
Q 027435 10 NDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPG-HGISLGKEQQEAGVQN 88 (223)
Q Consensus 10 ~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~-~gi~iGs~~~~~~v~n 88 (223)
.+|++.|+.+...+ -.-|+-+.+..++++++|.+..-- +.+++. .....|+.|+|.+. .|+.- .+...
T Consensus 121 ~~VtF~ni~F~~~~---~~~g~~f~~~t~~~~hgC~F~gf~-g~cl~~-~~~~~VrGC~F~~C~~gi~~------~~~~~ 189 (386)
T PF01696_consen 121 EGVTFVNIRFEGRD---TFSGVVFHANTNTLFHGCSFFGFH-GTCLES-WAGGEVRGCTFYGCWKGIVS------RGKSK 189 (386)
T ss_pred eeeEEEEEEEecCC---ccceeEEEecceEEEEeeEEecCc-ceeEEE-cCCcEEeeeEEEEEEEEeec------CCcce
Confidence 45666677666543 122566666777777777777531 223333 23567777777654 35532 34556
Q ss_pred EEEEeEEEeCcc
Q 027435 89 VTVTSVTFTGTQ 100 (223)
Q Consensus 89 I~~~n~~~~~~~ 100 (223)
+.|++|.|....
T Consensus 190 lsVk~C~FekC~ 201 (386)
T PF01696_consen 190 LSVKKCVFEKCV 201 (386)
T ss_pred EEeeheeeeheE
Confidence 666777776544
No 50
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=86.43 E-value=7.2 Score=33.96 Aligned_cols=112 Identities=12% Similarity=0.191 Sum_probs=53.0
Q ss_pred CeecEEEEeEEEEcCCCC--CCCceEeecCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceecCCCC
Q 027435 8 GCNDVKVQGVKVSAAGES--PNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQQEAG 85 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~--~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~~~~~ 85 (223)
..+++.++||+|.|.... ...-.+.+. .+.+.+++|.|...-|-+-..+ ..-.++||++.+.-=+-+|..
T Consensus 85 ~a~~f~~~nit~~Nt~g~~~~qAvAl~~~-~d~~~f~~c~~~g~QDTL~~~~--~r~y~~~c~IeG~vDFIfG~~----- 156 (298)
T PF01095_consen 85 NADDFTAENITFENTAGPSGGQAVALRVS-GDRAAFYNCRFLGYQDTLYANG--GRQYFKNCYIEGNVDFIFGNG----- 156 (298)
T ss_dssp -STT-EEEEEEEEEHCSGSG----SEEET--TSEEEEEEEEE-STT-EEE-S--SEEEEES-EEEESEEEEEESS-----
T ss_pred cccceeeeeeEEecCCCCcccceeeeeec-CCcEEEEEeEEccccceeeecc--ceeEEEeeEEEecCcEEECCe-----
Confidence 456788888888874311 111223333 4778888888887666665554 256777888776533334432
Q ss_pred EEEEEEEeEEEeCcc----eeeEEEeeCCCCCeeEEeEEEEeEEEeCC
Q 027435 86 VQNVTVTSVTFTGTQ----NGVRIKSWGRTSGGFARNILFQHALMNNV 129 (223)
Q Consensus 86 v~nI~~~n~~~~~~~----~gi~iks~~g~~~g~v~nI~~~ni~~~~~ 129 (223)
...|+||++.... .+..|-.........-....|.|+++...
T Consensus 157 --~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vF~~c~i~~~ 202 (298)
T PF01095_consen 157 --TAVFENCTIHSRRPGGGQGGYITAQGRTSPSQKSGFVFDNCTITGD 202 (298)
T ss_dssp --EEEEES-EEEE--SSTSSTEEEEEE---CTTSS-EEEEES-EEEES
T ss_pred --eEEeeeeEEEEeccccccceeEEeCCccccCCCeEEEEEEeEEecC
Confidence 2357777776421 11223221100111233457777777764
No 51
>PLN02916 pectinesterase family protein
Probab=86.07 E-value=21 Score=33.52 Aligned_cols=81 Identities=7% Similarity=0.061 Sum_probs=44.5
Q ss_pred CeecEEEEeEEEEcCCCCCCCceEeec-CCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceecCCCCE
Q 027435 8 GCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQQEAGV 86 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~~~~~v 86 (223)
..+++..+||+|.|.........+.+. .++...+++|.|...-|-+-..+ ..-.+++|++.+.-=+-+|.
T Consensus 275 ~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 345 (502)
T PLN02916 275 SGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHS--LRQFYRDCHIYGTIDFIFGD------- 345 (502)
T ss_pred ECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCC--CCEEEEecEEecccceeccC-------
Confidence 345677777777775322222334332 35777777777777656544443 23466777776542233332
Q ss_pred EEEEEEeEEEe
Q 027435 87 QNVTVTSVTFT 97 (223)
Q Consensus 87 ~nI~~~n~~~~ 97 (223)
-...|+||.+.
T Consensus 346 a~avFq~C~I~ 356 (502)
T PLN02916 346 AAVVFQNCDIF 356 (502)
T ss_pred ceEEEecCEEE
Confidence 23456666664
No 52
>PLN02665 pectinesterase family protein
Probab=85.83 E-value=26 Score=31.50 Aligned_cols=114 Identities=8% Similarity=0.081 Sum_probs=62.1
Q ss_pred ECeecEEEEeEEEEcCCCC-----CCCceEee-cCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEcee
Q 027435 7 NGCNDVKVQGVKVSAAGES-----PNTDGIHV-QSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKE 80 (223)
Q Consensus 7 ~~~~nv~I~~v~I~~~~~~-----~ntDGidi-~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~ 80 (223)
..++++..+||+|.|.... .....+.+ ...+.+.+++|.+...-|-+-... -.-.++||++.+.-=+-+|..
T Consensus 151 v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~~--gr~yf~~CyIeG~VDFIFG~g 228 (366)
T PLN02665 151 VESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDDK--GRHFFKDCYIEGTVDFIFGSG 228 (366)
T ss_pred EECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccceeEeCC--CCEEEEeeEEeeccceecccc
Confidence 4578899999999995321 11122332 235889999999998767555443 246777888776522334432
Q ss_pred cCCCCEEEEEEEeEEEeCccee--eEEEeeCCCCCeeEEeEEEEeEEEeCC
Q 027435 81 QQEAGVQNVTVTSVTFTGTQNG--VRIKSWGRTSGGFARNILFQHALMNNV 129 (223)
Q Consensus 81 ~~~~~v~nI~~~n~~~~~~~~g--i~iks~~g~~~g~v~nI~~~ni~~~~~ 129 (223)
...|++|++.....+ -.|-.........-....|.|+++...
T Consensus 229 -------~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~ 272 (366)
T PLN02665 229 -------KSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGT 272 (366)
T ss_pred -------ceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEEecC
Confidence 235666666543222 122211110001122345777777664
No 53
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=85.71 E-value=3.8 Score=35.64 Aligned_cols=93 Identities=19% Similarity=0.254 Sum_probs=52.7
Q ss_pred EeecCCccEEEEecEEec--CC---------cceeecCCeeeEEEEeeEEcCCceEEEceecCCC----CEEEEEEEeEE
Q 027435 31 IHVQSSSGVTILDSKIGT--GD---------DCVSVGPGATNLWIENVACGPGHGISLGKEQQEA----GVQNVTVTSVT 95 (223)
Q Consensus 31 idi~~s~nV~I~n~~i~~--gD---------D~i~iks~s~nV~I~n~~~~~~~gi~iGs~~~~~----~v~nI~~~n~~ 95 (223)
+|+..-++..|+|+.-.+ .| --+++.+ |.|..|.|..+..+.|+-||-..-++ --.|....|+.
T Consensus 262 vhvengkhfvirnvkaknitpdfskkagidnatvaiyg-cdnfvidni~mvnsagmligygvikg~ylsipqnfkln~i~ 340 (464)
T PRK10123 262 IHVENGKHFVIRNIKAKNITPDFSKKAGIDNATVAIYG-CDNFVIDNIEMINSAGMLIGYGVIKGKYLSIPQNFKLNNIQ 340 (464)
T ss_pred EEecCCcEEEEEeeeccccCCCchhhcCCCcceEEEEc-ccceEEeccccccccccEEEeeeeeccEecccccceeceEe
Confidence 455555566666665553 11 1256664 88888888888777777665432111 12456666666
Q ss_pred EeCc-----ceeeEEEeeCCCCCeeEEeEEEEeEEEeCC
Q 027435 96 FTGT-----QNGVRIKSWGRTSGGFARNILFQHALMNNV 129 (223)
Q Consensus 96 ~~~~-----~~gi~iks~~g~~~g~v~nI~~~ni~~~~~ 129 (223)
+.++ -+|+.|.|- ...+=|-+.|+.|+..
T Consensus 341 ldn~~l~yklrgiqissg-----natsfvaitn~~mkra 374 (464)
T PRK10123 341 LDNTHLAYKLRGIQISAG-----NAVSFVALTNIEMKRA 374 (464)
T ss_pred ecccccceeeeeeEeccC-----CcceEEEEeeeehhhh
Confidence 6554 345655433 3345566667776654
No 54
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=85.50 E-value=33 Score=32.39 Aligned_cols=113 Identities=7% Similarity=0.099 Sum_probs=64.0
Q ss_pred CeecEEEEeEEEEcCCCCCCCceEee-cCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceecCCCCE
Q 027435 8 GCNDVKVQGVKVSAAGESPNTDGIHV-QSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQQEAGV 86 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~~ntDGidi-~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~~~~~v 86 (223)
..+++..+|++|.|.........+.+ ...+.+.+++|.|...-|-+-..+ ..-.+++|++.+.-=+-+|.
T Consensus 311 ~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 381 (529)
T PLN02170 311 MGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHS--KRQFYRETDITGTVDFIFGN------- 381 (529)
T ss_pred EcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCC--CCEEEEeeEEccccceeccc-------
Confidence 46678888888888543222233433 235888888888888767555544 24577888887653333443
Q ss_pred EEEEEEeEEEeCcce---eeEEEeeCCCCCeeEEeEEEEeEEEeCC
Q 027435 87 QNVTVTSVTFTGTQN---GVRIKSWGRTSGGFARNILFQHALMNNV 129 (223)
Q Consensus 87 ~nI~~~n~~~~~~~~---gi~iks~~g~~~g~v~nI~~~ni~~~~~ 129 (223)
-...|+||.+..... .-.|-.........-....|.|+++...
T Consensus 382 a~avFq~C~I~~~~~~~~~g~ITAq~R~~~~~~~Gfvf~~C~it~~ 427 (529)
T PLN02170 382 SAVVFQSCNIAARKPSGDRNYVTAQGRSDPNQNTGISIHNCRITAE 427 (529)
T ss_pred ceEEEeccEEEEecCCCCceEEEecCCCCCCCCceEEEEeeEEecC
Confidence 234677777764211 1223222110112224577888888764
No 55
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=85.38 E-value=23 Score=33.47 Aligned_cols=82 Identities=6% Similarity=0.048 Sum_probs=44.3
Q ss_pred CeecEEEEeEEEEcCCCCCCCceEeec-CCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceecCCCCE
Q 027435 8 GCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQQEAGV 86 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~~~~~v 86 (223)
..+++..+|++|.|.........+.+. .++...+++|.|...-|-+-..+ ..-.++||++.+.-=+-+|.
T Consensus 311 ~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~--~rq~y~~c~I~GtVDFIFG~------- 381 (538)
T PLN03043 311 SGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHS--LRQFYRECDIYGTVDFIFGN------- 381 (538)
T ss_pred ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCC--CcEEEEeeEEeeccceEeec-------
Confidence 346677777887775322222334332 34677777777777655443333 23466666666542232332
Q ss_pred EEEEEEeEEEeC
Q 027435 87 QNVTVTSVTFTG 98 (223)
Q Consensus 87 ~nI~~~n~~~~~ 98 (223)
-...|+||.+.-
T Consensus 382 a~avfq~c~i~~ 393 (538)
T PLN03043 382 AAAIFQNCNLYA 393 (538)
T ss_pred ceeeeeccEEEE
Confidence 224566666643
No 56
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=85.07 E-value=20 Score=33.61 Aligned_cols=113 Identities=10% Similarity=0.078 Sum_probs=63.9
Q ss_pred CeecEEEEeEEEEcCCCCCCCceEee-cCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceecCCCCE
Q 027435 8 GCNDVKVQGVKVSAAGESPNTDGIHV-QSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQQEAGV 86 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~~ntDGidi-~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~~~~~v 86 (223)
..+++..+||+|.|.........+.+ ...+.+.+++|.|...-|-+-..+ ..-.+++|++.+.-=+-+|..
T Consensus 268 ~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~--~rqyy~~C~I~G~vDFIFG~a------ 339 (497)
T PLN02698 268 TGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAA--LRQFYRECDIYGTIDFIFGNA------ 339 (497)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCC--CcEEEEeeEEEeccceEeccc------
Confidence 45788999999998643222233443 245889999999998767555544 234778888876533334432
Q ss_pred EEEEEEeEEEeCcce--e--eEEEeeCCCCCeeEEeEEEEeEEEeCC
Q 027435 87 QNVTVTSVTFTGTQN--G--VRIKSWGRTSGGFARNILFQHALMNNV 129 (223)
Q Consensus 87 ~nI~~~n~~~~~~~~--g--i~iks~~g~~~g~v~nI~~~ni~~~~~ 129 (223)
...|+||++..... + -.|-.........-..+.|.++++...
T Consensus 340 -~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~ 385 (497)
T PLN02698 340 -AAVFQNCYLFLRRPHGKSYNVILANGRSDPGQNTGFSLQSCRIRTS 385 (497)
T ss_pred -ceeecccEEEEecCCCCCceEEEecCCCCCCCCceEEEEeeEEecC
Confidence 23677777753211 1 112211110112224567777777764
No 57
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=84.69 E-value=22 Score=33.63 Aligned_cols=82 Identities=7% Similarity=0.103 Sum_probs=46.1
Q ss_pred CeecEEEEeEEEEcCCCCCCCceEee-cCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceecCCCCE
Q 027435 8 GCNDVKVQGVKVSAAGESPNTDGIHV-QSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQQEAGV 86 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~~ntDGidi-~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~~~~~v 86 (223)
..+++..+||+|.|.........+.+ ...+.+.+++|.|...-|-+-..+ ..-.+++|++.+.-=+-+|.
T Consensus 315 ~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 385 (541)
T PLN02416 315 SGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHS--FRQFYRECDIYGTIDYIFGN------- 385 (541)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCC--CceEEEeeEEeeccceeecc-------
Confidence 35677778888887543222233333 234777788888777666444433 34477777777542233443
Q ss_pred EEEEEEeEEEeC
Q 027435 87 QNVTVTSVTFTG 98 (223)
Q Consensus 87 ~nI~~~n~~~~~ 98 (223)
-...|+||.+..
T Consensus 386 a~avfq~c~i~~ 397 (541)
T PLN02416 386 AAVVFQACNIVS 397 (541)
T ss_pred ceEEEeccEEEE
Confidence 234666666654
No 58
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=84.66 E-value=29 Score=32.67 Aligned_cols=82 Identities=4% Similarity=0.053 Sum_probs=44.9
Q ss_pred CeecEEEEeEEEEcCCCCCCCceEeec-CCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceecCCCCE
Q 027435 8 GCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQQEAGV 86 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~~~~~v 86 (223)
..+++..+|++|.|.........+.+. ..+...+++|.|...-|-+-..+ ..-.+++|++.+.-=+-+|.
T Consensus 291 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 361 (520)
T PLN02201 291 SGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHT--MRQFYRECRITGTVDFIFGD------- 361 (520)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCC--CCEEEEeeEEeecccEEecC-------
Confidence 456677788888875422222334332 34777777887777656544443 23456666666542233332
Q ss_pred EEEEEEeEEEeC
Q 027435 87 QNVTVTSVTFTG 98 (223)
Q Consensus 87 ~nI~~~n~~~~~ 98 (223)
-...|+||.+..
T Consensus 362 a~avf~~C~i~~ 373 (520)
T PLN02201 362 ATAVFQNCQILA 373 (520)
T ss_pred ceEEEEccEEEE
Confidence 224566666653
No 59
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=84.50 E-value=20 Score=34.90 Aligned_cols=121 Identities=7% Similarity=0.081 Sum_probs=61.6
Q ss_pred CeecEEEEeEEEEcCCCCCCCceEeec-CCccEEEEecEEecCCcceeecCC------------------eeeEEEEeeE
Q 027435 8 GCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPG------------------ATNLWIENVA 68 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iks~------------------s~nV~I~n~~ 68 (223)
..+++..+||+|.|.........+.+. ..+...+++|.|...-|-+-..++ .-..+++||.
T Consensus 335 ~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq~C~ 414 (670)
T PLN02217 335 VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFGDAAAVFQNCT 414 (670)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEecCceEEEEccE
Confidence 456788999999986432223344432 457888888888775453333321 2335555555
Q ss_pred EcCCc------e-EEE-ceecCCCCEEEEEEEeEEEeCcceeeE----EEeeCCCCCeeEEeEEEEeEEEeCC
Q 027435 69 CGPGH------G-ISL-GKEQQEAGVQNVTVTSVTFTGTQNGVR----IKSWGRTSGGFARNILFQHALMNNV 129 (223)
Q Consensus 69 ~~~~~------g-i~i-Gs~~~~~~v~nI~~~n~~~~~~~~gi~----iks~~g~~~g~v~nI~~~ni~~~~~ 129 (223)
+..-. | +.- |... ...-.-+.|.||++.+....+. .+++-|........+.|.+..|.+.
T Consensus 415 I~~r~~~~~~~~~ITAqgr~~-~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t~l~~~ 486 (670)
T PLN02217 415 LLVRKPLLNQACPITAHGRKD-PRESTGFVLQGCTIVGEPDYLAVKETSKAYLGRPWKEYSRTIIMNTFIPDF 486 (670)
T ss_pred EEEccCCCCCceeEecCCCCC-CCCCceEEEEeeEEecCccccccccccceeeccCCCCCceEEEEecccCCe
Confidence 54311 1 110 1100 1123457777777766431111 1222232345566777777777665
No 60
>PLN02682 pectinesterase family protein
Probab=83.92 E-value=32 Score=30.95 Aligned_cols=113 Identities=6% Similarity=-0.007 Sum_probs=61.3
Q ss_pred CeecEEEEeEEEEcCCCC-----CCCceEee-cCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceec
Q 027435 8 GCNDVKVQGVKVSAAGES-----PNTDGIHV-QSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQ 81 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~-----~ntDGidi-~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~ 81 (223)
..+++..+||+|.|.... .....+.+ ...+.+.+++|.|...-|-+-... -.-.++||++.+.-=+-+|.
T Consensus 161 ~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~~--gRqyf~~C~IeG~VDFIFG~-- 236 (369)
T PLN02682 161 NSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYDHL--GRHYFKDCYIEGSVDFIFGN-- 236 (369)
T ss_pred ECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEECC--CCEEEEeeEEcccccEEecC--
Confidence 466888999999985321 11123333 235888999999998767555443 24677888887653233443
Q ss_pred CCCCEEEEEEEeEEEeCcce-eeEEEeeCCCCCeeEEeEEEEeEEEeCC
Q 027435 82 QEAGVQNVTVTSVTFTGTQN-GVRIKSWGRTSGGFARNILFQHALMNNV 129 (223)
Q Consensus 82 ~~~~v~nI~~~n~~~~~~~~-gi~iks~~g~~~g~v~nI~~~ni~~~~~ 129 (223)
-...|++|.+..... .-.|-.........-....|.|+++...
T Consensus 237 -----g~a~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg~ 280 (369)
T PLN02682 237 -----GLSLYEGCHLHAIARNFGALTAQKRQSVLEDTGFSFVNCKVTGS 280 (369)
T ss_pred -----ceEEEEccEEEEecCCCeEEecCCCCCCCCCceEEEEeeEecCC
Confidence 234667777653211 1122221110011123556777777653
No 61
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=83.86 E-value=33 Score=32.91 Aligned_cols=113 Identities=7% Similarity=0.062 Sum_probs=59.3
Q ss_pred CeecEEEEeEEEEcCCCCCCCceEee-cCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceecCCCCE
Q 027435 8 GCNDVKVQGVKVSAAGESPNTDGIHV-QSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQQEAGV 86 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~~ntDGidi-~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~~~~~v 86 (223)
..+++..+|++|.|.........+.+ ..++...+++|.|...-|-+-..+ ..-.+++|++.+.-=+-+|.
T Consensus 370 ~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 440 (596)
T PLN02745 370 LGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQT--HRQFYRSCVITGTIDFIFGD------- 440 (596)
T ss_pred EcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCC--CcEEEEeeEEEeeccEEecc-------
Confidence 45677888888887532112223333 235788888888887666444433 34577777777642233443
Q ss_pred EEEEEEeEEEeCcc----eeeEEEeeCCCCCeeEEeEEEEeEEEeCC
Q 027435 87 QNVTVTSVTFTGTQ----NGVRIKSWGRTSGGFARNILFQHALMNNV 129 (223)
Q Consensus 87 ~nI~~~n~~~~~~~----~gi~iks~~g~~~g~v~nI~~~ni~~~~~ 129 (223)
-...|+||.+.-.. ..-.|-.........-..+.|.|+++...
T Consensus 441 a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~c~i~~~ 487 (596)
T PLN02745 441 AAAIFQNCLIFVRKPLPNQQNTVTAQGRVDKFETTGIVLQNCRIAPD 487 (596)
T ss_pred eeEEEEecEEEEecCCCCCCceEEecCCCCCCCCceEEEEeeEEecC
Confidence 23466777765321 00122221100112224567777777754
No 62
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=83.46 E-value=22 Score=33.89 Aligned_cols=81 Identities=5% Similarity=0.049 Sum_probs=44.0
Q ss_pred CeecEEEEeEEEEcCCCCCCCceEee-cCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceecCCCCE
Q 027435 8 GCNDVKVQGVKVSAAGESPNTDGIHV-QSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQQEAGV 86 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~~ntDGidi-~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~~~~~v 86 (223)
..+++..+|++|.|.........+.+ ...+...+++|.|...-|-+-..+ ..-.+++|++.+.-=+-+|.
T Consensus 338 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 408 (566)
T PLN02713 338 VGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHS--LRQFYRECDIYGTVDFIFGN------- 408 (566)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECC--CCEEEEeeEEecccceeccc-------
Confidence 34677778888887532222233433 234777777777777656444443 23466666666542222332
Q ss_pred EEEEEEeEEEe
Q 027435 87 QNVTVTSVTFT 97 (223)
Q Consensus 87 ~nI~~~n~~~~ 97 (223)
-.+.|+||.+.
T Consensus 409 a~avfq~C~i~ 419 (566)
T PLN02713 409 AAVVFQNCNLY 419 (566)
T ss_pred ceEEEeccEEE
Confidence 22456666664
No 63
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=83.28 E-value=29 Score=33.23 Aligned_cols=81 Identities=6% Similarity=0.078 Sum_probs=45.1
Q ss_pred CeecEEEEeEEEEcCCCCCCCceEeec-CCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceecCCCCE
Q 027435 8 GCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQQEAGV 86 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~~~~~v 86 (223)
..+++..+||+|.|.........+.+. ..+...+++|.|...-|-+-..+ ..=.+++|++.+.-=+-+|.
T Consensus 358 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 428 (587)
T PLN02484 358 TGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHS--NRQFFRECDIYGTVDFIFGN------- 428 (587)
T ss_pred EcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCC--CcEEEEecEEEeccceeccc-------
Confidence 456777888888875322222334332 35778888888887666444433 23466677766542222333
Q ss_pred EEEEEEeEEEe
Q 027435 87 QNVTVTSVTFT 97 (223)
Q Consensus 87 ~nI~~~n~~~~ 97 (223)
-...|+||.+.
T Consensus 429 a~avfq~C~i~ 439 (587)
T PLN02484 429 AAVVLQNCSIY 439 (587)
T ss_pred ceeEEeccEEE
Confidence 22356666664
No 64
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=83.27 E-value=28 Score=32.99 Aligned_cols=82 Identities=9% Similarity=0.066 Sum_probs=44.0
Q ss_pred CeecEEEEeEEEEcCCCCCCCceEeec-CCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceecCCCCE
Q 027435 8 GCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQQEAGV 86 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~~~~~v 86 (223)
..+++..+|++|.|.........+.+. ..+...+++|.|...-|-+-..+ ..-.+++|++.+.-=+-+|.
T Consensus 310 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 380 (539)
T PLN02995 310 EGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS--QRQFYRECYIYGTVDFIFGN------- 380 (539)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCC--CceEEEeeEEeeccceEecc-------
Confidence 355677777777775322222334332 35777777777777555444333 23466777776542233332
Q ss_pred EEEEEEeEEEeC
Q 027435 87 QNVTVTSVTFTG 98 (223)
Q Consensus 87 ~nI~~~n~~~~~ 98 (223)
-...|+||.+..
T Consensus 381 a~avf~~C~i~~ 392 (539)
T PLN02995 381 AAAVFQNCIILP 392 (539)
T ss_pred cceEEeccEEEE
Confidence 123566666643
No 65
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=83.15 E-value=23 Score=33.76 Aligned_cols=81 Identities=5% Similarity=0.026 Sum_probs=49.7
Q ss_pred CeecEEEEeEEEEcCCCCCCCceEee-cCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceecCCCCE
Q 027435 8 GCNDVKVQGVKVSAAGESPNTDGIHV-QSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQQEAGV 86 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~~ntDGidi-~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~~~~~v 86 (223)
..+++..+|++|.|.........+.+ ..++...+++|.|...-|-+-..+ ..-.+++|++.+.-=+-+|.
T Consensus 343 ~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~------- 413 (565)
T PLN02468 343 FGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHA--QRQFYRECNIYGTVDFIFGN------- 413 (565)
T ss_pred ECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCC--CceEEEeeEEecccceeecc-------
Confidence 46789999999998643222234443 246889999999988666544443 23467777777542233443
Q ss_pred EEEEEEeEEEe
Q 027435 87 QNVTVTSVTFT 97 (223)
Q Consensus 87 ~nI~~~n~~~~ 97 (223)
-...|+||.+.
T Consensus 414 a~avfq~c~i~ 424 (565)
T PLN02468 414 SAVVFQNCNIL 424 (565)
T ss_pred ceEEEeccEEE
Confidence 23466666664
No 66
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=82.34 E-value=34 Score=32.50 Aligned_cols=82 Identities=9% Similarity=0.085 Sum_probs=45.5
Q ss_pred CeecEEEEeEEEEcCCCCCCCceEee-cCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceecCCCCE
Q 027435 8 GCNDVKVQGVKVSAAGESPNTDGIHV-QSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQQEAGV 86 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~~ntDGidi-~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~~~~~v 86 (223)
..+++..+|+++.|.........+.+ ..++.+.+++|.|...-|-+-..+ ..-.+++|++.+.-=+-+|.
T Consensus 321 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 391 (548)
T PLN02301 321 VGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHS--LRQFYRDSYITGTVDFIFGN------- 391 (548)
T ss_pred ECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecC--CcEEEEeeEEEeccceeccc-------
Confidence 35667777788877532212233333 235777788888877666554443 23467777776542233333
Q ss_pred EEEEEEeEEEeC
Q 027435 87 QNVTVTSVTFTG 98 (223)
Q Consensus 87 ~nI~~~n~~~~~ 98 (223)
-...|+||.+.-
T Consensus 392 a~avfq~c~i~~ 403 (548)
T PLN02301 392 AAVVFQNCKIVA 403 (548)
T ss_pred ceeEEeccEEEE
Confidence 234566666653
No 67
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=82.34 E-value=44 Score=31.39 Aligned_cols=114 Identities=9% Similarity=0.023 Sum_probs=62.5
Q ss_pred CeecEEEEeEEEEcCCCCCCCceEeec-CCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceecCCCCE
Q 027435 8 GCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQQEAGV 86 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~~~~~v 86 (223)
..+++..+|++|.|.........+.+. .++...+++|.|...-|-+-..+ ..-.+++|++.+.-=+-+|.
T Consensus 282 ~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~--~RqyyrdC~I~GtVDFIFG~------- 352 (509)
T PLN02488 282 NGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHR--DRQFYRECFITGTVDFICGN------- 352 (509)
T ss_pred EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCC--CCEEEEeeEEeeccceEecc-------
Confidence 355777888888875432223344442 45788888888887666554443 34577777777653233443
Q ss_pred EEEEEEeEEEeCcc----eeeEEEeeCCCCCeeEEeEEEEeEEEeCCC
Q 027435 87 QNVTVTSVTFTGTQ----NGVRIKSWGRTSGGFARNILFQHALMNNVD 130 (223)
Q Consensus 87 ~nI~~~n~~~~~~~----~gi~iks~~g~~~g~v~nI~~~ni~~~~~~ 130 (223)
-...|+||.+.... ..-.|-.........-..+.|.|+++....
T Consensus 353 a~avFq~C~I~sr~~~~~~~~~ITAq~R~~~~~~tGfvf~~C~it~~~ 400 (509)
T PLN02488 353 AAAVFQFCQIVARQPMMGQSNVITAQSRESKDDNSGFSIQKCNITASS 400 (509)
T ss_pred eEEEEEccEEEEecCCCCCCEEEEeCCCCCCCCCcEEEEEeeEEecCC
Confidence 23567777776421 111232221101122234778888777653
No 68
>PLN02176 putative pectinesterase
Probab=81.38 E-value=30 Score=30.77 Aligned_cols=81 Identities=12% Similarity=0.190 Sum_probs=47.7
Q ss_pred CeecEEEEeEEEEcCCCC------CCCceEee-cCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEcee
Q 027435 8 GCNDVKVQGVKVSAAGES------PNTDGIHV-QSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKE 80 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~------~ntDGidi-~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~ 80 (223)
..+++..+||+|.|.... .....+.+ ...+.+.+++|.|...-|-+-... -.-.+++|++.+.-=+-+|.
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~~--gRqyf~~CyIeG~VDFIFG~- 196 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDGK--GRHYYKRCVISGGIDFIFGY- 196 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeEeCC--cCEEEEecEEEecccEEecC-
Confidence 467899999999985321 11233332 235889999999988666554433 24566677776542222332
Q ss_pred cCCCCEEEEEEEeEEEe
Q 027435 81 QQEAGVQNVTVTSVTFT 97 (223)
Q Consensus 81 ~~~~~v~nI~~~n~~~~ 97 (223)
-...|+||++.
T Consensus 197 ------a~a~Fe~C~I~ 207 (340)
T PLN02176 197 ------AQSIFEGCTLK 207 (340)
T ss_pred ------ceEEEeccEEE
Confidence 12456666665
No 69
>PLN02497 probable pectinesterase
Probab=81.08 E-value=34 Score=30.32 Aligned_cols=81 Identities=6% Similarity=0.071 Sum_probs=46.4
Q ss_pred CeecEEEEeEEEEcCCCCC-------CCceEee-cCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEce
Q 027435 8 GCNDVKVQGVKVSAAGESP-------NTDGIHV-QSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGK 79 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~~-------ntDGidi-~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs 79 (223)
..+++..+|++|.|....+ ....+.+ ...+.+.+++|.+...-|-+-... -.-.++||++.+.-=+-+|.
T Consensus 113 ~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~~--gRqyf~~C~IeG~VDFIFG~ 190 (331)
T PLN02497 113 LADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDSD--GRHYFKRCTIQGAVDFIFGS 190 (331)
T ss_pred ecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccccceeeCC--CcEEEEeCEEEecccEEccC
Confidence 4667888888888853211 1122332 235788888888887666554333 24567777776542233332
Q ss_pred ecCCCCEEEEEEEeEEEe
Q 027435 80 EQQEAGVQNVTVTSVTFT 97 (223)
Q Consensus 80 ~~~~~~v~nI~~~n~~~~ 97 (223)
-...|+||.+.
T Consensus 191 -------g~a~Fe~C~I~ 201 (331)
T PLN02497 191 -------GQSIYESCVIQ 201 (331)
T ss_pred -------ceEEEEccEEE
Confidence 12466666665
No 70
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=79.78 E-value=47 Score=31.83 Aligned_cols=113 Identities=8% Similarity=0.123 Sum_probs=61.0
Q ss_pred CeecEEEEeEEEEcCCCCCCCceEee-cCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceecCCCCE
Q 027435 8 GCNDVKVQGVKVSAAGESPNTDGIHV-QSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQQEAGV 86 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~~ntDGidi-~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~~~~~v 86 (223)
..+++..+||+|.|.........+.+ ..++...+++|.|...-|-+-..+ ..-.+++|++.+.-=+-+|.
T Consensus 360 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~--~rq~y~~c~I~GtvDFIFG~------- 430 (587)
T PLN02313 360 VGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHS--NRQFFVKCHITGTVDFIFGN------- 430 (587)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCC--CcEEEEeeEEeeccceeccc-------
Confidence 35677888888888542222233333 245788888888887666554443 23477777777652233343
Q ss_pred EEEEEEeEEEeCcc--ee--eEEEeeCCCCCeeEEeEEEEeEEEeCC
Q 027435 87 QNVTVTSVTFTGTQ--NG--VRIKSWGRTSGGFARNILFQHALMNNV 129 (223)
Q Consensus 87 ~nI~~~n~~~~~~~--~g--i~iks~~g~~~g~v~nI~~~ni~~~~~ 129 (223)
-...|+||.+.-.. .| -.|-.........-..+.|.|+++...
T Consensus 431 a~avfq~c~i~~r~~~~~~~~~iTAqgr~~~~~~tG~v~~~c~i~~~ 477 (587)
T PLN02313 431 AAAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGT 477 (587)
T ss_pred eeEEEEccEEEEecCCCCCcceEEecCCCCCCCCceEEEEecEEecC
Confidence 23567777776421 01 122222110112234577888887654
No 71
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=78.75 E-value=53 Score=30.11 Aligned_cols=114 Identities=13% Similarity=0.137 Sum_probs=61.4
Q ss_pred CeecEEEEeEEEEcCCC----CCCCceEee-cCCccEEEEecEEecCCcceeecC-C---------eeeEEEEeeEEcCC
Q 027435 8 GCNDVKVQGVKVSAAGE----SPNTDGIHV-QSSSGVTILDSKIGTGDDCVSVGP-G---------ATNLWIENVACGPG 72 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~----~~ntDGidi-~~s~nV~I~n~~i~~gDD~i~iks-~---------s~nV~I~n~~~~~~ 72 (223)
..+++..+||+|.|... ..+...+.+ ...+.+.+++|.|...-|-+-..+ + ...-.+++|+|.+.
T Consensus 204 ~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG~ 283 (422)
T PRK10531 204 QNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEGD 283 (422)
T ss_pred ECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEeec
Confidence 56788888888888532 111222332 235788888888887656544421 0 12477788888765
Q ss_pred ceEEEceecCCCCEEEEEEEeEEEeCcce----eeEEEeeCCCCCeeEEeEEEEeEEEeCC
Q 027435 73 HGISLGKEQQEAGVQNVTVTSVTFTGTQN----GVRIKSWGRTSGGFARNILFQHALMNNV 129 (223)
Q Consensus 73 ~gi~iGs~~~~~~v~nI~~~n~~~~~~~~----gi~iks~~g~~~g~v~nI~~~ni~~~~~ 129 (223)
-=+-+|.. ...|+||+|..... .-.|-.... ....-....|.|+++...
T Consensus 284 VDFIFG~g-------~AvFenC~I~s~~~~~~~~g~ITA~~t-~~~~~~GfvF~nCrit~~ 336 (422)
T PRK10531 284 VDFVFGRG-------AVVFDNTEFRVVNSRTQQEAYVFAPAT-LPNIYYGFLAINSRFNAS 336 (422)
T ss_pred ccEEccCc-------eEEEEcCEEEEecCCCCCceEEEecCC-CCCCCCEEEEECCEEecC
Confidence 33334432 34677777754211 112211111 112233567888888764
No 72
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=78.28 E-value=62 Score=30.62 Aligned_cols=113 Identities=6% Similarity=0.082 Sum_probs=61.7
Q ss_pred CeecEEEEeEEEEcCCCCCCCceEeec-CCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceecCCCCE
Q 027435 8 GCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQQEAGV 86 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~~~~~v 86 (223)
..+++..+|++|.|.........+.+. ..+.+.+++|.|...-|-+-..+ ..-.+++|++.+.-=+-+|..
T Consensus 303 ~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~IeGtVDFIFG~a------ 374 (530)
T PLN02933 303 KGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHS--AKQFYRECDIYGTIDFIFGNA------ 374 (530)
T ss_pred ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCC--CceEEEeeEEecccceeccCc------
Confidence 456788888888885422222344432 35788888888887666554443 234778888876533334432
Q ss_pred EEEEEEeEEEeCcc----eeeEEEeeCCCCCeeEEeEEEEeEEEeCC
Q 027435 87 QNVTVTSVTFTGTQ----NGVRIKSWGRTSGGFARNILFQHALMNNV 129 (223)
Q Consensus 87 ~nI~~~n~~~~~~~----~gi~iks~~g~~~g~v~nI~~~ni~~~~~ 129 (223)
...|+||.+.-.. ..-.|-.........-..+.|.|+++...
T Consensus 375 -~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 375 -AVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPTGISIISSRILAA 420 (530)
T ss_pred -eEEEeccEEEEeccCCCCceEEEecCCCCCCCCceEEEEeeEEecC
Confidence 2466777765321 01122222110112223577888887764
No 73
>PLN02634 probable pectinesterase
Probab=76.67 E-value=57 Score=29.29 Aligned_cols=82 Identities=5% Similarity=0.037 Sum_probs=45.2
Q ss_pred CeecEEEEeEEEEcCCC-----CCCCceEee-cCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceec
Q 027435 8 GCNDVKVQGVKVSAAGE-----SPNTDGIHV-QSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQ 81 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~-----~~ntDGidi-~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~ 81 (223)
..+++..+||+|.|... ......+.+ ...+.+.+++|.|...-|-+-... -.-.++||++.+.-=+-+|..
T Consensus 147 ~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~~--gR~yf~~CyIeG~VDFIFG~g- 223 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDDA--GRHYFKECYIEGSIDFIFGNG- 223 (359)
T ss_pred ECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccceeeeCC--CCEEEEeeEEcccccEEcCCc-
Confidence 34577788888887431 111222332 134778888888887666554433 246667777765422333431
Q ss_pred CCCCEEEEEEEeEEEeC
Q 027435 82 QEAGVQNVTVTSVTFTG 98 (223)
Q Consensus 82 ~~~~v~nI~~~n~~~~~ 98 (223)
...|+||.+..
T Consensus 224 ------~a~Fe~C~I~s 234 (359)
T PLN02634 224 ------RSMYKDCELHS 234 (359)
T ss_pred ------eEEEeccEEEE
Confidence 23566666654
No 74
>PLN02432 putative pectinesterase
Probab=76.51 E-value=51 Score=28.70 Aligned_cols=80 Identities=6% Similarity=0.035 Sum_probs=42.8
Q ss_pred CeecEEEEeEEEEcCCCCCCCceEeec-CCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceecCCCCE
Q 027435 8 GCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQQEAGV 86 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~~~~~v 86 (223)
..+++..+||+|.|... +....+.+. ..+.+.+.+|.|...-|-+-... -.-.++||++.+.-=+-+|..
T Consensus 92 ~a~~f~a~nlt~~Nt~g-~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~~--gr~yf~~c~I~G~VDFIFG~g------ 162 (293)
T PLN02432 92 LASDFVGRFLTIQNTFG-SSGKAVALRVAGDRAAFYGCRILSYQDTLLDDT--GRHYYRNCYIEGATDFICGNA------ 162 (293)
T ss_pred ECCCeEEEeeEEEeCCC-CCCceEEEEEcCCcEEEEcceEecccceeEECC--CCEEEEeCEEEecccEEecCc------
Confidence 34567777777777431 111223321 34677777777776556544433 245667777765422333431
Q ss_pred EEEEEEeEEEe
Q 027435 87 QNVTVTSVTFT 97 (223)
Q Consensus 87 ~nI~~~n~~~~ 97 (223)
...|++|.+.
T Consensus 163 -~a~Fe~c~i~ 172 (293)
T PLN02432 163 -ASLFEKCHLH 172 (293)
T ss_pred -eEEEEeeEEE
Confidence 2466666665
No 75
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=76.07 E-value=75 Score=30.40 Aligned_cols=114 Identities=9% Similarity=0.173 Sum_probs=61.3
Q ss_pred CeecEEEEeEEEEcCCCCCCCceEeec-CCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceecCCCCE
Q 027435 8 GCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQQEAGV 86 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~~~~~v 86 (223)
..+++..+|++|.|.........+.+. .++...+++|.|...-|-+-..+ ..-.+++|++.+.-=+-+|.
T Consensus 345 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 415 (572)
T PLN02990 345 NGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHS--HRQFFRDCTVSGTVDFIFGD------- 415 (572)
T ss_pred EcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCC--CcEEEEeeEEecccceEccC-------
Confidence 356778888888885422223344432 45788888888887666444433 34566777777653233443
Q ss_pred EEEEEEeEEEeCcc--e--eeEEEeeCCCCCeeEEeEEEEeEEEeCCC
Q 027435 87 QNVTVTSVTFTGTQ--N--GVRIKSWGRTSGGFARNILFQHALMNNVD 130 (223)
Q Consensus 87 ~nI~~~n~~~~~~~--~--gi~iks~~g~~~g~v~nI~~~ni~~~~~~ 130 (223)
-...|+||.+.-.. . .-.|-.........-..+.|.|+++....
T Consensus 416 a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 416 AKVVLQNCNIVVRKPMKGQSCMITAQGRSDVRESTGLVLQNCHITGEP 463 (572)
T ss_pred ceEEEEccEEEEecCCCCCceEEEeCCCCCCCCCceEEEEeeEEecCc
Confidence 22467777775321 0 12222221101112235778888877643
No 76
>PLN02314 pectinesterase
Probab=76.05 E-value=56 Score=31.32 Aligned_cols=81 Identities=5% Similarity=0.070 Sum_probs=48.9
Q ss_pred CeecEEEEeEEEEcCCCCCCCceEee-cCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceecCCCCE
Q 027435 8 GCNDVKVQGVKVSAAGESPNTDGIHV-QSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQQEAGV 86 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~~ntDGidi-~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~~~~~v 86 (223)
..+++..+|++|.|.........+.+ ...+...+++|.|...-|-+-..+ ..-.++||++.+.-=+-+|.
T Consensus 363 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~------- 433 (586)
T PLN02314 363 AGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHS--NRQFYRDCDITGTIDFIFGN------- 433 (586)
T ss_pred EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCC--CCEEEEeeEEEeccceeccC-------
Confidence 46678889999998542222233443 245888889999988666554443 23477777777542233332
Q ss_pred EEEEEEeEEEe
Q 027435 87 QNVTVTSVTFT 97 (223)
Q Consensus 87 ~nI~~~n~~~~ 97 (223)
-...|+||.+.
T Consensus 434 a~avf~~c~i~ 444 (586)
T PLN02314 434 AAVVFQNCNIQ 444 (586)
T ss_pred ceeeeeccEEE
Confidence 22456666665
No 77
>PLN02304 probable pectinesterase
Probab=75.40 E-value=63 Score=29.22 Aligned_cols=82 Identities=2% Similarity=0.047 Sum_probs=50.2
Q ss_pred CeecEEEEeEEEEcCCCC-----CCCceEeec-CCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceec
Q 027435 8 GCNDVKVQGVKVSAAGES-----PNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQ 81 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~-----~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~ 81 (223)
..+++..+||+|.|.... .....+.+. ..+.+.+++|.|...-|-+-... -.-.++||++.+.-=+-+|..
T Consensus 160 ~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~--gR~Yf~~CyIeG~VDFIFG~g- 236 (379)
T PLN02304 160 FASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDR--GRHYFKDCYIQGSIDFIFGDA- 236 (379)
T ss_pred ECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeCC--CCEEEEeeEEcccccEEeccc-
Confidence 356788888888885311 112233332 35888888888888666555443 246788888876533334432
Q ss_pred CCCCEEEEEEEeEEEeC
Q 027435 82 QEAGVQNVTVTSVTFTG 98 (223)
Q Consensus 82 ~~~~v~nI~~~n~~~~~ 98 (223)
...|++|.+..
T Consensus 237 ------~A~Fe~C~I~s 247 (379)
T PLN02304 237 ------RSLYENCRLIS 247 (379)
T ss_pred ------eEEEEccEEEE
Confidence 23677777764
No 78
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=75.15 E-value=20 Score=32.42 Aligned_cols=60 Identities=25% Similarity=0.271 Sum_probs=40.7
Q ss_pred ccEEEEecEEecCC--cceeecCCeeeEEEEeeEEcCCceEEEceecCCCCEEEEEEEeEEEeCcceee
Q 027435 37 SGVTILDSKIGTGD--DCVSVGPGATNLWIENVACGPGHGISLGKEQQEAGVQNVTVTSVTFTGTQNGV 103 (223)
Q Consensus 37 ~nV~I~n~~i~~gD--D~i~iks~s~nV~I~n~~~~~~~gi~iGs~~~~~~v~nI~~~n~~~~~~~~gi 103 (223)
.+|++.|+.+...| -++.+-+ ..++++.+|.|.+-+|+++-... ...++.|+|.+...|+
T Consensus 121 ~~VtF~ni~F~~~~~~~g~~f~~-~t~~~~hgC~F~gf~g~cl~~~~------~~~VrGC~F~~C~~gi 182 (386)
T PF01696_consen 121 EGVTFVNIRFEGRDTFSGVVFHA-NTNTLFHGCSFFGFHGTCLESWA------GGEVRGCTFYGCWKGI 182 (386)
T ss_pred eeeEEEEEEEecCCccceeEEEe-cceEEEEeeEEecCcceeEEEcC------CcEEeeeEEEEEEEEe
Confidence 57899999888655 2444544 67899999999987777763322 2356667766655555
No 79
>PLN02773 pectinesterase
Probab=73.91 E-value=63 Score=28.48 Aligned_cols=66 Identities=9% Similarity=0.040 Sum_probs=31.4
Q ss_pred EEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCceEEEeEEEEeEEEEccCcceEEEecCCCCceeceEEEeEEEE
Q 027435 119 ILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLI 194 (223)
Q Consensus 119 I~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nI~~~nI~~~~~~~~~~~i~g~~~~~~~ni~~~ni~i~ 194 (223)
..|+++++.....+ +|...... .+.. -....|.|.++++.....-...|.|=.|-..+.|.+..+.
T Consensus 173 a~Fe~c~i~s~~~g-~ITA~~r~----~~~~-----~~GfvF~~c~it~~~~~~~~yLGRpW~~~a~vVf~~t~l~ 238 (317)
T PLN02773 173 ALLEHCHIHCKSAG-FITAQSRK----SSQE-----STGYVFLRCVITGNGGSGYMYLGRPWGPFGRVVFAYTYMD 238 (317)
T ss_pred EEEEeeEEEEccCc-EEECCCCC----CCCC-----CceEEEEccEEecCCCCcceeecCCCCCCceEEEEecccC
Confidence 57888888765433 33332111 0111 1235677777666432112234555445555666665543
No 80
>PLN02197 pectinesterase
Probab=73.67 E-value=34 Score=32.75 Aligned_cols=81 Identities=7% Similarity=0.160 Sum_probs=46.0
Q ss_pred CeecEEEEeEEEEcCCCCCCCceEeec-CCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceecCCCCE
Q 027435 8 GCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQQEAGV 86 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~~~~~v 86 (223)
..+++..+|++|.|.........+.+. .++...+++|.|...-|-+-..+ ..-.+++|++.+.-=+-+|..
T Consensus 362 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a------ 433 (588)
T PLN02197 362 ESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNN--GRQFYRNIVVSGTVDFIFGKS------ 433 (588)
T ss_pred ECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecC--CCEEEEeeEEEecccccccce------
Confidence 456778888888875322122334332 35778888888887666555443 234677777765422223321
Q ss_pred EEEEEEeEEEe
Q 027435 87 QNVTVTSVTFT 97 (223)
Q Consensus 87 ~nI~~~n~~~~ 97 (223)
...|+||.+.
T Consensus 434 -~avfq~C~i~ 443 (588)
T PLN02197 434 -ATVIQNSLIV 443 (588)
T ss_pred -eeeeecCEEE
Confidence 1466666664
No 81
>PLN02671 pectinesterase
Probab=73.61 E-value=68 Score=28.78 Aligned_cols=82 Identities=6% Similarity=0.083 Sum_probs=44.8
Q ss_pred CeecEEEEeEEEEcCCC----CCCCceEeec-CCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEEEceecC
Q 027435 8 GCNDVKVQGVKVSAAGE----SPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISLGKEQQ 82 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~----~~ntDGidi~-~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~iGs~~~ 82 (223)
..+++..+||+|.|... ........+. ..+.+.+++|.|...-|-+-...+ .-.++||++.+.-=+-+|..
T Consensus 152 ~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~~~g--R~yf~~CyIeG~VDFIFG~g-- 227 (359)
T PLN02671 152 ESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQDTLLDETG--SHYFYQCYIQGSVDFIFGNA-- 227 (359)
T ss_pred ECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEeccccccEeCCC--cEEEEecEEEEeccEEecce--
Confidence 35677777888887521 1112233321 347788888888876565443332 35677777765422323431
Q ss_pred CCCEEEEEEEeEEEeC
Q 027435 83 EAGVQNVTVTSVTFTG 98 (223)
Q Consensus 83 ~~~v~nI~~~n~~~~~ 98 (223)
...|++|.+..
T Consensus 228 -----~A~Fe~C~I~s 238 (359)
T PLN02671 228 -----KSLYQDCVIQS 238 (359)
T ss_pred -----eEEEeccEEEE
Confidence 24666666653
No 82
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=67.67 E-value=14 Score=33.77 Aligned_cols=66 Identities=23% Similarity=0.276 Sum_probs=38.0
Q ss_pred eeeEEEEeeEEcCC--ceEEEceecC------C--------CC----EEEEEEEeEEEeCcceeeEEEeeCCCCCeeEEe
Q 027435 59 ATNLWIENVACGPG--HGISLGKEQQ------E--------AG----VQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARN 118 (223)
Q Consensus 59 s~nV~I~n~~~~~~--~gi~iGs~~~------~--------~~----v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~n 118 (223)
+-|+.++|...-.. +|+-+|+.++ + .+ =.|=.++|+..+++ .|+.+.-. | .+++|+|
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~-lGVG~~~D-G-~~~yvsn 339 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGS-LGVGIGMD-G-KGGYVSN 339 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES--SSESCEEE-C-CS-EEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheecc-ceeeeeec-C-CCceEee
Confidence 57899999987653 7888777531 1 01 35667888888876 36555533 5 6899999
Q ss_pred EEEEeEEEe
Q 027435 119 ILFQHALMN 127 (223)
Q Consensus 119 I~~~ni~~~ 127 (223)
|+.+++.-.
T Consensus 340 i~~~d~~g~ 348 (549)
T PF09251_consen 340 ITVQDCAGA 348 (549)
T ss_dssp EEEES-SSE
T ss_pred EEeecccCC
Confidence 888876544
No 83
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=64.78 E-value=1e+02 Score=29.13 Aligned_cols=37 Identities=5% Similarity=-0.160 Sum_probs=18.6
Q ss_pred eEEEEeEEEEccCc-------ceEEEecCCCCceeceEEEeEEEE
Q 027435 157 DVIYQDIHGTSATE-------VGVKLDCSSKNPCTGISLEDVKLI 194 (223)
Q Consensus 157 nI~~~nI~~~~~~~-------~~~~i~g~~~~~~~ni~~~ni~i~ 194 (223)
.+.|.|.++++... ..+| .|.|=.+-.-+.|-+-.+.
T Consensus 397 Gfvf~~C~it~~~~~~~~~~~~~~y-LGRPW~~ysrvv~~~t~l~ 440 (520)
T PLN02201 397 GFSIQFSNISADTDLLPYLNTTATY-LGRPWKLYSRTVFMQNYMS 440 (520)
T ss_pred EEEEEeeEEecCccccccccccceE-eecCCCCCceEEEEecCcC
Confidence 45566666554321 1233 3555445555666666543
No 84
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=62.82 E-value=1.3e+02 Score=27.74 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=11.6
Q ss_pred EEEEEEeEEEeCcceeeEE
Q 027435 87 QNVTVTSVTFTGTQNGVRI 105 (223)
Q Consensus 87 ~nI~~~n~~~~~~~~gi~i 105 (223)
..+.|.+|.|.+...-|..
T Consensus 238 Dra~fy~C~flG~QDTLy~ 256 (422)
T PRK10531 238 DKVQIENVNILGRQDTFFV 256 (422)
T ss_pred CcEEEEeeEEecccceeee
Confidence 4566777777765545544
No 85
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=61.21 E-value=96 Score=29.14 Aligned_cols=37 Identities=3% Similarity=-0.122 Sum_probs=19.2
Q ss_pred eEEEEeEEEEccCc-------ceEEEecCCCCceeceEEEeEEEE
Q 027435 157 DVIYQDIHGTSATE-------VGVKLDCSSKNPCTGISLEDVKLI 194 (223)
Q Consensus 157 nI~~~nI~~~~~~~-------~~~~i~g~~~~~~~ni~~~ni~i~ 194 (223)
.+.|.|.++++... ...+ .|.|=.+-.-+.|-+-.+.
T Consensus 374 G~vf~~c~i~~~~~~~~~~~~~~~y-LGRPW~~ysr~vf~~s~l~ 417 (497)
T PLN02698 374 GFSLQSCRIRTSSDFSPVKHSYSSY-LGRPWKKYSRAIVMESYID 417 (497)
T ss_pred eEEEEeeEEecCCccccccccccee-ccCCCCCCceEEEEecccC
Confidence 56677766665431 0122 3555445555666666544
No 86
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=60.86 E-value=63 Score=28.11 Aligned_cols=111 Identities=15% Similarity=0.172 Sum_probs=64.4
Q ss_pred CeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCC------ce-EEE-ce
Q 027435 8 GCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPG------HG-ISL-GK 79 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~------~g-i~i-Gs 79 (223)
..+++.+.+|++.... |-+-... ....+++|+|...-|=|-=. -..++++|.+..- .| |.- +.
T Consensus 113 ~~d~~~f~~c~~~g~Q-----DTL~~~~-~r~y~~~c~IeG~vDFIfG~---~~a~f~~c~i~~~~~~~~~~~~ItA~~r 183 (298)
T PF01095_consen 113 SGDRAAFYNCRFLGYQ-----DTLYANG-GRQYFKNCYIEGNVDFIFGN---GTAVFENCTIHSRRPGGGQGGYITAQGR 183 (298)
T ss_dssp T-TSEEEEEEEEE-ST-----T-EEE-S-SEEEEES-EEEESEEEEEES---SEEEEES-EEEE--SSTSSTEEEEEE--
T ss_pred cCCcEEEEEeEEcccc-----ceeeecc-ceeEEEeeEEEecCcEEECC---eeEEeeeeEEEEeccccccceeEEeCCc
Confidence 5678899999998743 3454443 56788999999877755332 3678999999842 12 222 22
Q ss_pred ecCCCCEEEEEEEeEEEeCcc--------eeeEEEeeCCCCCeeEEeEEEEeEEEeCCCcc
Q 027435 80 EQQEAGVQNVTVTSVTFTGTQ--------NGVRIKSWGRTSGGFARNILFQHALMNNVDNP 132 (223)
Q Consensus 80 ~~~~~~v~nI~~~n~~~~~~~--------~gi~iks~~g~~~g~v~nI~~~ni~~~~~~~~ 132 (223)
.. ...-.-..|.||++.... ...+|+ + ..+.-..+.|.|..|.+.=.|
T Consensus 184 ~~-~~~~~G~vF~~c~i~~~~~~~~~~~~~~~yLG-R---pW~~~s~vvf~~t~m~~~I~p 239 (298)
T PF01095_consen 184 TS-PSQKSGFVFDNCTITGDSGVSPSYSDGSVYLG-R---PWGPYSRVVFINTYMDDHINP 239 (298)
T ss_dssp -C-TTSS-EEEEES-EEEESTTTCGGCCCSTEEEE------SSEETEEEEES-EE-TTEET
T ss_pred cc-cCCCeEEEEEEeEEecCccccccccceeEEec-C---cccceeeEEEEccccCCeeec
Confidence 21 234678999999999752 223443 2 235567899999999986433
No 87
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=60.82 E-value=1.1e+02 Score=29.25 Aligned_cols=37 Identities=3% Similarity=-0.110 Sum_probs=18.0
Q ss_pred eEEEEeEEEEccCc-------ceEEEecCCCCceeceEEEeEEEE
Q 027435 157 DVIYQDIHGTSATE-------VGVKLDCSSKNPCTGISLEDVKLI 194 (223)
Q Consensus 157 nI~~~nI~~~~~~~-------~~~~i~g~~~~~~~ni~~~ni~i~ 194 (223)
.+.|.|.+++.... .+.+ .|.|=.+-.-+.|-+-.+.
T Consensus 427 G~vf~~c~i~~~~~~~~~~~~~~~y-LGRPW~~ysr~V~~~s~l~ 470 (548)
T PLN02301 427 GISIQKCDIIASSDLEPVKGSFKTY-LGRPWKEYSRTVVMQSYID 470 (548)
T ss_pred EEEEEeeEEecCcccccccccccee-eecCCCCCceEEEEecccC
Confidence 55666666655421 1223 3444444555666555543
No 88
>PLN02916 pectinesterase family protein
Probab=60.44 E-value=1.3e+02 Score=28.23 Aligned_cols=38 Identities=8% Similarity=-0.077 Sum_probs=20.7
Q ss_pred EeEEEEeEEEEccCc-------ceEEEecCCCCceeceEEEeEEEE
Q 027435 156 SDVIYQDIHGTSATE-------VGVKLDCSSKNPCTGISLEDVKLI 194 (223)
Q Consensus 156 ~nI~~~nI~~~~~~~-------~~~~i~g~~~~~~~ni~~~ni~i~ 194 (223)
..+.|.|.+++.... ...+ .|.|=.+-.-+.|-+-.+.
T Consensus 380 tGfvf~~C~it~~~~~~~~~g~~~~y-LGRPW~~ysrvVf~~t~~~ 424 (502)
T PLN02916 380 TGISIQHSRVRASPEFEAVKGRFKSF-LGRPWKKYSRTVFLKTDLD 424 (502)
T ss_pred cEEEEEeeEEecCccccccccccceE-eecCCCCCceEEEEecccC
Confidence 356677766665421 1233 4555455556666666654
No 89
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=59.95 E-value=91 Score=29.80 Aligned_cols=37 Identities=8% Similarity=-0.095 Sum_probs=17.8
Q ss_pred eEEEEeEEEEccCc-------ceEEEecCCCCceeceEEEeEEEE
Q 027435 157 DVIYQDIHGTSATE-------VGVKLDCSSKNPCTGISLEDVKLI 194 (223)
Q Consensus 157 nI~~~nI~~~~~~~-------~~~~i~g~~~~~~~ni~~~ni~i~ 194 (223)
.+.|.|.+++.... ...+ .|.|=.+-.-+.|-+-.+.
T Consensus 444 G~vf~~c~i~~~~~~~~~~~~~~~y-LGRPW~~ysr~V~~~s~~~ 487 (566)
T PLN02713 444 GTSIQNCTIKAADDLASSNYTVKTY-LGRPWKEYSRTVVMQSYID 487 (566)
T ss_pred EEEEEcCEEecCCccccccccccee-eecCCCCcceEEEEecccC
Confidence 45566666654321 1223 3444444445666665543
No 90
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=59.45 E-value=77 Score=30.43 Aligned_cols=12 Identities=0% Similarity=-0.194 Sum_probs=6.3
Q ss_pred EEEEEeEEEeCc
Q 027435 88 NVTVTSVTFTGT 99 (223)
Q Consensus 88 nI~~~n~~~~~~ 99 (223)
...|.||.|.+-
T Consensus 391 ~~~fy~C~~~g~ 402 (587)
T PLN02313 391 FSAFYQCDMFAY 402 (587)
T ss_pred cEEEEeeeEecc
Confidence 345555555553
No 91
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=58.30 E-value=68 Score=31.27 Aligned_cols=37 Identities=5% Similarity=-0.060 Sum_probs=20.8
Q ss_pred eEEEEeEEEEccC-------cceEEEecCCCCceeceEEEeEEEE
Q 027435 157 DVIYQDIHGTSAT-------EVGVKLDCSSKNPCTGISLEDVKLI 194 (223)
Q Consensus 157 nI~~~nI~~~~~~-------~~~~~i~g~~~~~~~ni~~~ni~i~ 194 (223)
.+.|.|.++++.. ....|| |.|=.+-.-+.|-+-.+.
T Consensus 441 Gfvf~~C~i~~~~~~~~~~~~~~~yL-GRPW~~ysrvVf~~t~l~ 484 (670)
T PLN02217 441 GFVLQGCTIVGEPDYLAVKETSKAYL-GRPWKEYSRTIIMNTFIP 484 (670)
T ss_pred eEEEEeeEEecCccccccccccceee-ccCCCCCceEEEEecccC
Confidence 4667777766642 113444 655455566677666554
No 92
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=56.66 E-value=93 Score=29.89 Aligned_cols=37 Identities=3% Similarity=-0.202 Sum_probs=19.0
Q ss_pred eEEEEeEEEEccCc-------ceEEEecCCCCceeceEEEeEEEE
Q 027435 157 DVIYQDIHGTSATE-------VGVKLDCSSKNPCTGISLEDVKLI 194 (223)
Q Consensus 157 nI~~~nI~~~~~~~-------~~~~i~g~~~~~~~ni~~~ni~i~ 194 (223)
.+.|.|.++++... .+.| .|.|=.+-.-+.|-+-.+.
T Consensus 464 G~vf~~c~i~~~~~~~~~~~~~~~y-LGRPW~~ysrvV~~~s~i~ 507 (587)
T PLN02484 464 GISIHACRILAASDLAASKGSFPTY-LGRPWKLYSRTVYMMSYMG 507 (587)
T ss_pred EEEEEeeEEecCCccccccCcccee-ccCCCCCCceEEEEecccC
Confidence 56667766655321 1233 3544444555666666554
No 93
>PLN02314 pectinesterase
Probab=56.63 E-value=1e+02 Score=29.51 Aligned_cols=38 Identities=3% Similarity=-0.164 Sum_probs=19.4
Q ss_pred EeEEEEeEEEEccCc--ceEEEecCCCCceeceEEEeEEEE
Q 027435 156 SDVIYQDIHGTSATE--VGVKLDCSSKNPCTGISLEDVKLI 194 (223)
Q Consensus 156 ~nI~~~nI~~~~~~~--~~~~i~g~~~~~~~ni~~~ni~i~ 194 (223)
..+.|.|.++++... .+.| .|.|=.+-.-+.|-+-.+.
T Consensus 468 ~G~vf~~c~i~~~~~~~~~~y-LGRpW~~ysr~v~~~s~i~ 507 (586)
T PLN02314 468 TGISIQRCTISAFGNLTAPTY-LGRPWKDFSTTVIMQSYIG 507 (586)
T ss_pred CEEEEEeeEEecCCccccccc-ccCCCCCCceEEEEecccC
Confidence 356677777666431 1333 3444334444566665543
No 94
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=56.05 E-value=17 Score=18.00 Aligned_cols=9 Identities=44% Similarity=0.493 Sum_probs=3.6
Q ss_pred EEEEecEEe
Q 027435 39 VTILDSKIG 47 (223)
Q Consensus 39 V~I~n~~i~ 47 (223)
++|+++.|.
T Consensus 4 ~~i~~n~i~ 12 (26)
T smart00710 4 VTIENNTIR 12 (26)
T ss_pred EEEECCEEE
Confidence 334444443
No 95
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=55.85 E-value=1.1e+02 Score=29.34 Aligned_cols=37 Identities=5% Similarity=-0.139 Sum_probs=19.5
Q ss_pred eEEEEeEEEEccCc---ceEEEecCCCCceeceEEEeEEEE
Q 027435 157 DVIYQDIHGTSATE---VGVKLDCSSKNPCTGISLEDVKLI 194 (223)
Q Consensus 157 nI~~~nI~~~~~~~---~~~~i~g~~~~~~~ni~~~ni~i~ 194 (223)
.+.|.|.+++.... ...+ .|.|=.+-.-+.|-+-.+.
T Consensus 449 G~vf~~c~i~~~~~~~~~~~y-LGRPW~~~sr~v~~~s~~~ 488 (565)
T PLN02468 449 GISIQNCTILPLGDLTSVKTF-LGRPWKNYSTTVIMHSMMG 488 (565)
T ss_pred eEEEEccEEecCCCcccccee-eecCCCCCceEEEEecccC
Confidence 56677777665431 1223 4555444555666666543
No 96
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=55.09 E-value=1.6e+02 Score=27.97 Aligned_cols=35 Identities=3% Similarity=-0.155 Sum_probs=20.0
Q ss_pred eEEEEeEEEEccCcceEEEecCCCCceeceEEEeEEEE
Q 027435 157 DVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLI 194 (223)
Q Consensus 157 nI~~~nI~~~~~~~~~~~i~g~~~~~~~ni~~~ni~i~ 194 (223)
.+.|.|.++++.. ..+ .|.|=.+-..+.|-+-.+.
T Consensus 416 Gfvf~~C~it~~~--~~y-LGRPW~~ysrvVf~~t~l~ 450 (529)
T PLN02170 416 GISIHNCRITAES--MTY-LGRPWKEYSRTVVMQSFID 450 (529)
T ss_pred eEEEEeeEEecCC--cee-eeCCCCCCceEEEEecccC
Confidence 5677777776653 333 3545445555666666543
No 97
>PLN02480 Probable pectinesterase
Probab=54.59 E-value=40 Score=30.01 Aligned_cols=76 Identities=12% Similarity=0.040 Sum_probs=38.5
Q ss_pred ccEEEEecEEecC----------CcceeecCCeeeEEEEeeEEcC-CceEEEceecCCCCEEEEEEEeEEEeCcceeeEE
Q 027435 37 SGVTILDSKIGTG----------DDCVSVGPGATNLWIENVACGP-GHGISLGKEQQEAGVQNVTVTSVTFTGTQNGVRI 105 (223)
Q Consensus 37 ~nV~I~n~~i~~g----------DD~i~iks~s~nV~I~n~~~~~-~~gi~iGs~~~~~~v~nI~~~n~~~~~~~~gi~i 105 (223)
++++++|+.|.+. +-+|++......+.+.||.|.+ .|-|--.. -.-.|+||.|.+.- =+-+
T Consensus 132 ~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~-------gR~yf~~C~IeG~V-DFIF 203 (343)
T PLN02480 132 PHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK-------GRHYYHSCYIQGSI-DFIF 203 (343)
T ss_pred CCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC-------CCEEEEeCEEEeee-eEEc
Confidence 5666666666653 2345554445666666666655 24443211 12356666665531 1111
Q ss_pred EeeCCCCCeeEEeEEEEeEEEeCC
Q 027435 106 KSWGRTSGGFARNILFQHALMNNV 129 (223)
Q Consensus 106 ks~~g~~~g~v~nI~~~ni~~~~~ 129 (223)
| . -...|+++++...
T Consensus 204 ----G--~---g~a~fe~C~i~s~ 218 (343)
T PLN02480 204 ----G--R---GRSIFHNCEIFVI 218 (343)
T ss_pred ----c--c---eeEEEEccEEEEe
Confidence 1 1 1346777777654
No 98
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=54.23 E-value=1.2e+02 Score=28.72 Aligned_cols=11 Identities=0% Similarity=-0.115 Sum_probs=6.2
Q ss_pred eEEEEeEEEEc
Q 027435 157 DVIYQDIHGTS 167 (223)
Q Consensus 157 nI~~~nI~~~~ 167 (223)
.+.|.|.+++.
T Consensus 417 G~~~~~c~i~~ 427 (538)
T PLN03043 417 GISIINCTIEA 427 (538)
T ss_pred eEEEEecEEec
Confidence 45566655554
No 99
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=53.64 E-value=1.3e+02 Score=28.83 Aligned_cols=37 Identities=8% Similarity=-0.031 Sum_probs=18.5
Q ss_pred eEEEEeEEEEccCc-------ceEEEecCCCCceeceEEEeEEEE
Q 027435 157 DVIYQDIHGTSATE-------VGVKLDCSSKNPCTGISLEDVKLI 194 (223)
Q Consensus 157 nI~~~nI~~~~~~~-------~~~~i~g~~~~~~~ni~~~ni~i~ 194 (223)
.+.|.|.++++... .+.| .|.|=.+-.-+.|-+-.+.
T Consensus 451 G~vf~~C~it~~~~~~~~~~~~~~y-LGRpW~~ysrvV~~~s~i~ 494 (572)
T PLN02990 451 GLVLQNCHITGEPAYIPVKSINKAY-LGRPWKEFSRTIIMGTTID 494 (572)
T ss_pred eEEEEeeEEecCccccccccccceE-eecCCCCCceEEEEecccC
Confidence 45666666655421 1233 3444444555666665543
No 100
>PLN02197 pectinesterase
Probab=53.61 E-value=1e+02 Score=29.63 Aligned_cols=37 Identities=5% Similarity=-0.021 Sum_probs=19.7
Q ss_pred eEEEEeEEEEccCc-------ceEEEecCCCCceeceEEEeEEEE
Q 027435 157 DVIYQDIHGTSATE-------VGVKLDCSSKNPCTGISLEDVKLI 194 (223)
Q Consensus 157 nI~~~nI~~~~~~~-------~~~~i~g~~~~~~~ni~~~ni~i~ 194 (223)
.+.|.|.+++.... .+.+ .|.|=.+-.-+.|-+-.+.
T Consensus 469 G~vf~~C~it~~~~~~~~~~~~~~y-LGRPW~~ysrvV~~~s~~~ 512 (588)
T PLN02197 469 GIVLQNCRIVPDKKLTAERLTVASY-LGRPWKKFSTTVIISTEIG 512 (588)
T ss_pred EEEEEccEEecCCcccccccccccc-cCCCCCCCceEEEEecccC
Confidence 56677766665421 1223 4555445556666666553
No 101
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=52.78 E-value=1.1e+02 Score=29.11 Aligned_cols=36 Identities=6% Similarity=-0.080 Sum_probs=17.2
Q ss_pred eEEEEeEEEEccCc-------ceEEEecCCCCceeceEEEeEEE
Q 027435 157 DVIYQDIHGTSATE-------VGVKLDCSSKNPCTGISLEDVKL 193 (223)
Q Consensus 157 nI~~~nI~~~~~~~-------~~~~i~g~~~~~~~ni~~~ni~i 193 (223)
.+.|.|.+++.... ...+ .|.|=.+-..+.|-+-.+
T Consensus 421 G~vf~~c~i~~~~~~~~~~~~~~~y-LGRPW~~~sr~v~~~s~i 463 (541)
T PLN02416 421 GISIQNCSILATEDLYSNSNSVKSY-LGRPWRVYSRTVVLESYI 463 (541)
T ss_pred EEEEEeeEEecCCcccccccccccc-ccCCCCCCccEEEEeccc
Confidence 45566666554321 1223 344433444566666554
No 102
>PLN02432 putative pectinesterase
Probab=49.20 E-value=1.8e+02 Score=25.33 Aligned_cols=35 Identities=9% Similarity=-0.035 Sum_probs=20.9
Q ss_pred eEEEEeEEEEccCcceEEEecCCCCceeceEEEeEEEE
Q 027435 157 DVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLI 194 (223)
Q Consensus 157 nI~~~nI~~~~~~~~~~~i~g~~~~~~~ni~~~ni~i~ 194 (223)
...|.|.++++.+ ..+ .|.|=.|-..+.|-+-.+.
T Consensus 194 Gfvf~~c~itg~g--~~y-LGRpW~~~srvvf~~t~l~ 228 (293)
T PLN02432 194 GFTFLGCKLTGAG--TTY-LGRPWGPYSRVVFALSYMS 228 (293)
T ss_pred eEEEEeeEEcccc--hhh-ccCCCCCccEEEEEecccC
Confidence 4567777766542 233 4555556666777777654
No 103
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=48.42 E-value=1.5e+02 Score=28.19 Aligned_cols=38 Identities=8% Similarity=-0.090 Sum_probs=20.6
Q ss_pred EeEEEEeEEEEccCc-------ceEEEecCCCCceeceEEEeEEEE
Q 027435 156 SDVIYQDIHGTSATE-------VGVKLDCSSKNPCTGISLEDVKLI 194 (223)
Q Consensus 156 ~nI~~~nI~~~~~~~-------~~~~i~g~~~~~~~ni~~~ni~i~ 194 (223)
..+.|.|.++++... ...+ .|.|=.+-..+.|-+-.+.
T Consensus 415 ~G~vf~~c~i~~~~~~~~~~~~~~~y-LGRPW~~ysrvv~~~t~~~ 459 (539)
T PLN02995 415 TGISIHNSRILPAPDLKPVVRTVKTY-MGRPWMKFSRTVVLQTYLD 459 (539)
T ss_pred ceEEEEeeEEecCCccccccccccee-ccCCCCCCcceEEEecccc
Confidence 456677777666421 1122 4555445555666666654
No 104
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=46.62 E-value=1.6e+02 Score=27.95 Aligned_cols=35 Identities=6% Similarity=-0.137 Sum_probs=19.6
Q ss_pred eEEEEeEEEEccCcceEEEecCCCCceeceEEEeEEEE
Q 027435 157 DVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLI 194 (223)
Q Consensus 157 nI~~~nI~~~~~~~~~~~i~g~~~~~~~ni~~~ni~i~ 194 (223)
.+.|.|.++++.. +.+ .|.|=.+-.-+.|-+-.+.
T Consensus 423 G~vf~~c~i~~~~--~~y-LGRPW~~~sr~v~~~t~l~ 457 (537)
T PLN02506 423 GFSIQDSYVLATQ--PTY-LGRPWKQYSRTVFMNTYMS 457 (537)
T ss_pred EEEEEcCEEccCC--ceE-EecCCCCCceEEEEecCCC
Confidence 5667777766542 444 3555444555666665543
No 105
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=46.33 E-value=1.6e+02 Score=23.97 Aligned_cols=14 Identities=29% Similarity=0.543 Sum_probs=6.7
Q ss_pred CEEEEEEEeEEEeC
Q 027435 85 GVQNVTVTSVTFTG 98 (223)
Q Consensus 85 ~v~nI~~~n~~~~~ 98 (223)
+..|-+++|..|.+
T Consensus 62 GF~ntlIENNVfDG 75 (198)
T PF08480_consen 62 GFYNTLIENNVFDG 75 (198)
T ss_pred cccccEEEeeeecc
Confidence 34444555555544
No 106
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=45.42 E-value=2.7e+02 Score=26.30 Aligned_cols=37 Identities=8% Similarity=-0.051 Sum_probs=18.2
Q ss_pred eEEEEeEEEEccCc-------ceEEEecCCCCceeceEEEeEEEE
Q 027435 157 DVIYQDIHGTSATE-------VGVKLDCSSKNPCTGISLEDVKLI 194 (223)
Q Consensus 157 nI~~~nI~~~~~~~-------~~~~i~g~~~~~~~ni~~~ni~i~ 194 (223)
.+.|.|.+++.... .+.+ .|.|=.+-..+.|-+-.+.
T Consensus 388 Gfvf~~C~it~~~~~~~~~~~~~~Y-LGRPW~~ySrvVf~~s~i~ 431 (509)
T PLN02488 388 GFSIQKCNITASSDLDPVKATVKTY-LGRPWRKYSTVAVLQSFIG 431 (509)
T ss_pred EEEEEeeEEecCCccccccccccee-ecCCCCCCccEEEEeccCC
Confidence 46666666665431 1223 3544444555555555443
No 107
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=44.78 E-value=2.8e+02 Score=26.33 Aligned_cols=37 Identities=3% Similarity=-0.180 Sum_probs=19.8
Q ss_pred eEEEEeEEEEccCc-------ceEEEecCCCCceeceEEEeEEEE
Q 027435 157 DVIYQDIHGTSATE-------VGVKLDCSSKNPCTGISLEDVKLI 194 (223)
Q Consensus 157 nI~~~nI~~~~~~~-------~~~~i~g~~~~~~~ni~~~ni~i~ 194 (223)
.+.|.|.+++.... ..++ .|.|=.+-..+.|.+-.+.
T Consensus 409 Gfvf~~C~it~~~~~~~~~~~~~~y-LGRPW~~ysrvVf~~s~l~ 452 (530)
T PLN02933 409 GISIISSRILAAPDLIPVKENFKAY-LGRPWRKYSRTVIIKSFID 452 (530)
T ss_pred eEEEEeeEEecCCcccccccccceE-eccCCCCCceEEEEecccC
Confidence 46677766665321 1233 3555445556677666654
No 108
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=44.63 E-value=2.6e+02 Score=25.80 Aligned_cols=170 Identities=16% Similarity=0.177 Sum_probs=65.6
Q ss_pred CeecEEEEeEEEEcCCCCCCCce--Eee----cCCccEEEEecEEecCC---cceeec----C---CeeeEEEEeeEEcC
Q 027435 8 GCNDVKVQGVKVSAAGESPNTDG--IHV----QSSSGVTILDSKIGTGD---DCVSVG----P---GATNLWIENVACGP 71 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~~ntDG--idi----~~s~nV~I~n~~i~~gD---D~i~ik----s---~s~nV~I~n~~~~~ 71 (223)
.|.+.++.++.|..... +..+. .-+ ...+|=+|++|.|.... --+.+. + -..+-+|..++|..
T Consensus 97 ~a~~~RlT~~vi~~fn~-~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~~~~~h~IdhNyF~~ 175 (425)
T PF14592_consen 97 YANHCRLTNCVIDDFNN-PDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQSIANYHRIDHNYFGP 175 (425)
T ss_dssp -SSS-EEES-EEES--S-S-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE--S--SS-------EEES-EEE-
T ss_pred eecceEEEeEEeeccCC-cccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEEecccCccccccCceEEeccccc
Confidence 57888999999986321 11111 112 23588899999998632 223333 1 13466899999972
Q ss_pred -----C---ceEEEceecCCCCEEEEEEEeEEEeCc---ceeeEEEeeCCCCCeeEEeEEEEeEEEeCC-C--ccEEEEe
Q 027435 72 -----G---HGISLGKEQQEAGVQNVTVTSVTFTGT---QNGVRIKSWGRTSGGFARNILFQHALMNNV-D--NPIIIDQ 137 (223)
Q Consensus 72 -----~---~gi~iGs~~~~~~v~nI~~~n~~~~~~---~~gi~iks~~g~~~g~v~nI~~~ni~~~~~-~--~~i~i~~ 137 (223)
+ -.|.||.....-.-.+.+|++..|... ..-|++||.. -.+++=+|+++.-.=+ + ..-.+.-
T Consensus 176 rp~~g~NggEtIRiG~S~~S~~~s~t~Ve~NlFe~cdGE~EIISvKS~~----N~ir~Ntf~es~G~ltlRHGn~n~V~g 251 (425)
T PF14592_consen 176 RPPKGGNGGETIRIGTSHSSMSDSNTTVENNLFERCDGEVEIISVKSSD----NTIRNNTFRESQGSLTLRHGNRNTVEG 251 (425)
T ss_dssp E---SSS---SEEE-SSTT-B-----EEES-EEEEE-SSSEEEEEESBT-----EEES-EEES-SSEEEEEE-SS-EEES
T ss_pred cCCCCCCCceeEEEecccccccccceeeecchhhhcCCceeEEEeecCC----ceEeccEEEeccceEEEecCCCceEec
Confidence 2 257788744222335666666666654 3457777663 4455545544321111 0 0001111
Q ss_pred ee--CCCCCC-CCC---CCCceEEEeEEEEeEEEEccCcceEEEecCCCCc
Q 027435 138 NY--CPDNGN-CPG---QASGVKISDVIYQDIHGTSATEVGVKLDCSSKNP 182 (223)
Q Consensus 138 ~y--~~~~~~-~~~---~~~~~~i~nI~~~nI~~~~~~~~~~~i~g~~~~~ 182 (223)
+| +...+. .++ -.....|.|=.|.+++++.-......+.|.|..|
T Consensus 252 N~FiGng~~~~tGGIRIi~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ 302 (425)
T PF14592_consen 252 NVFIGNGVKEGTGGIRIIGEGHTIYNNYFEGLTGTRFRGALAVMNGVPNSP 302 (425)
T ss_dssp -EEEE-SSSS-B--EEE-SBS-EEES-EEEESSB-TTTTSEE-EEE--BST
T ss_pred cEEecCCCcCCCCceEEecCCcEEEcceeeccccceeecceeeccCCCCCC
Confidence 11 110000 000 0134577888888888776654333467765433
No 109
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=38.48 E-value=1.6e+02 Score=26.36 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=13.4
Q ss_pred CCCceEeecCCccEEEEecEEe
Q 027435 26 PNTDGIHVQSSSGVTILDSKIG 47 (223)
Q Consensus 26 ~ntDGidi~~s~nV~I~n~~i~ 47 (223)
.-.|||-.+.|++-.+++-.++
T Consensus 170 y~rDgIy~~~S~~~~~~gnr~~ 191 (408)
T COG3420 170 YGRDGIYSDTSQHNVFKGNRFR 191 (408)
T ss_pred cccceEEEcccccceecccchh
Confidence 3456777766666666655544
No 110
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=34.30 E-value=1.4e+02 Score=26.58 Aligned_cols=12 Identities=17% Similarity=0.022 Sum_probs=5.6
Q ss_pred eeeEEEEeeEEc
Q 027435 59 ATNLWIENVACG 70 (223)
Q Consensus 59 s~nV~I~n~~~~ 70 (223)
...+.++||.+.
T Consensus 220 gDka~frnv~ll 231 (405)
T COG4677 220 GDKAIFRNVNLL 231 (405)
T ss_pred CCceeeeeeeEe
Confidence 344445555444
No 111
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=31.48 E-value=4.7e+02 Score=24.98 Aligned_cols=113 Identities=10% Similarity=0.062 Sum_probs=69.2
Q ss_pred CeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCC----------c-eEE
Q 027435 8 GCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPG----------H-GIS 76 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~----------~-gi~ 76 (223)
..+.+.+.+|.|...- |-+-..+ ..-.+++|+|...=|=| .. .-..+++||.+..- . .+.
T Consensus 356 ~~D~~~f~~c~~~G~Q-----DTLy~~~-~rq~y~~C~I~GtVDFI-FG--~a~avfq~c~i~~~~~~~~~~~~~~~~iT 426 (553)
T PLN02708 356 DSDLSVIENCEFLGNQ-----DTLYAHS-LRQFYKSCRIQGNVDFI-FG--NSAAVFQDCAILIAPRQLKPEKGENNAVT 426 (553)
T ss_pred cCCcEEEEeeeeeecc-----ccceeCC-CceEEEeeEEeecCCEE-ec--CceEEEEccEEEEeccccCCCCCCceEEE
Confidence 4678888899998743 2233333 45688999999766644 32 34799999999741 1 222
Q ss_pred EceecCCCCEEEEEEEeEEEeCcceee--------EEEeeCCCCCeeEEeEEEEeEEEeCC
Q 027435 77 LGKEQQEAGVQNVTVTSVTFTGTQNGV--------RIKSWGRTSGGFARNILFQHALMNNV 129 (223)
Q Consensus 77 iGs~~~~~~v~nI~~~n~~~~~~~~gi--------~iks~~g~~~g~v~nI~~~ni~~~~~ 129 (223)
.-+.++...-.-+.|.||++....... .-+++-|...+....+.|-+..|.+.
T Consensus 427 A~~r~~~~~~~G~vf~~C~it~~~~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~l~~~ 487 (553)
T PLN02708 427 AHGRTDPAQSTGFVFQNCLINGTEEYMKLYRSNPKVHKNFLGRPWKEYSRTVFIGCNLEAL 487 (553)
T ss_pred eCCCCCCCCCceEEEEccEEecCCcccccccccccccceeeecCCCCcceEEEEecccCCe
Confidence 211111233467999999998753211 01222232345677888888888775
No 112
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=27.53 E-value=5.7e+02 Score=24.70 Aligned_cols=114 Identities=7% Similarity=0.019 Sum_probs=70.8
Q ss_pred CeecEEEEeEEEEcCCCCCCCceEeecCCccEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCc------e-EEEcee
Q 027435 8 GCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGH------G-ISLGKE 80 (223)
Q Consensus 8 ~~~nv~I~~v~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~------g-i~iGs~ 80 (223)
.++...+.+|.+...-+ -+-.. ...-.+++|+|...=|=| .. .-..+++||.+..-. | |.--+.
T Consensus 398 ~~Dr~~f~~c~~~G~QD-----TLy~~-~~Rqyy~~C~I~GtVDFI-FG--~a~avf~~C~i~~~~~~~~~~~~iTAq~r 468 (596)
T PLN02745 398 QSDRSIFLNCRFEGYQD-----TLYAQ-THRQFYRSCVITGTIDFI-FG--DAAAIFQNCLIFVRKPLPNQQNTVTAQGR 468 (596)
T ss_pred cCCcEEEEeeEEeeccc-----ccccC-CCcEEEEeeEEEeeccEE-ec--ceeEEEEecEEEEecCCCCCCceEEecCC
Confidence 46778888888887432 23222 345799999999765633 33 357999999997531 2 111111
Q ss_pred cCCCCEEEEEEEeEEEeCcceee----EEEeeCCCCCeeEEeEEEEeEEEeCCC
Q 027435 81 QQEAGVQNVTVTSVTFTGTQNGV----RIKSWGRTSGGFARNILFQHALMNNVD 130 (223)
Q Consensus 81 ~~~~~v~nI~~~n~~~~~~~~gi----~iks~~g~~~g~v~nI~~~ni~~~~~~ 130 (223)
.+...-.-+.|.||++....... ..+++-|...+....+.|.+..|...=
T Consensus 469 ~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~s~l~~~I 522 (596)
T PLN02745 469 VDKFETTGIVLQNCRIAPDEDLKPVKTEVKSYLGRPWKEFSRTIVMESTIEDVI 522 (596)
T ss_pred CCCCCCceEEEEeeEEecCccccccccccceeccCCCCCCccEEEEecccCCeE
Confidence 11123468999999998753211 123343434566788889888888753
No 113
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=24.24 E-value=3.6e+02 Score=24.85 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=17.2
Q ss_pred eeeEEEeeCCCCCeeEEeEEEEeEEEeCCCccEEEE
Q 027435 101 NGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIID 136 (223)
Q Consensus 101 ~gi~iks~~g~~~g~v~nI~~~ni~~~~~~~~i~i~ 136 (223)
.||||- + .+=.|.|=+|++++-...+.++.+.
T Consensus 264 GGIRIi---~-~~H~I~nNY~~gl~g~~~~~~~~v~ 295 (425)
T PF14592_consen 264 GGIRII---G-EGHTIYNNYFEGLTGTRFRGALAVM 295 (425)
T ss_dssp --EEE----S-BS-EEES-EEEESSB-TTTTSEE-E
T ss_pred CceEEe---c-CCcEEEcceeeccccceeecceeec
Confidence 366663 2 2347888888888777776677643
No 114
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=21.17 E-value=4.8e+02 Score=21.64 Aligned_cols=107 Identities=17% Similarity=0.105 Sum_probs=65.2
Q ss_pred cEEEEeEEEEcCCCCCCCceEeecCCc-cEEEEecEEecCCcceeecCCeeeEEEEeeEEcCCceEE---EceecCC-CC
Q 027435 11 DVKVQGVKVSAAGESPNTDGIHVQSSS-GVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGIS---LGKEQQE-AG 85 (223)
Q Consensus 11 nv~I~~v~I~~~~~~~ntDGidi~~s~-nV~I~n~~i~~gDD~i~iks~s~nV~I~n~~~~~~~gi~---iGs~~~~-~~ 85 (223)
+-+|+||....- -.|.+.+.+.. .++|.+.-.+..+|-|-=-.+.-.+.|+|-+... .|-. -|.-... +.
T Consensus 83 ~Ctl~NVwwedV----cEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~Gtv~I~nF~a~d-~GKl~RSCGnC~~~~~~ 157 (215)
T PF03211_consen 83 SCTLENVWWEDV----CEDAATFKGDGGTVTIIGGGARNASDKVFQHNGGGTVTIKNFYAED-FGKLYRSCGNCSNNGGP 157 (215)
T ss_dssp CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-SSEEEEEEEEEEEE-EEEEEEE-TTETS----
T ss_pred CEEEEEEEeccc----ceeeeEEcCCCceEEEeCCcccCCCccEEEecCceeEEEEeEEEcC-CCEEEEeCCCCCCCCCc
Confidence 456666665552 34778887766 8888888888877765443445679999955442 2311 3333321 24
Q ss_pred EEEEEEEeEEEeCcceeeEEEeeCCCCCeeEEeEEEEe
Q 027435 86 VQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQH 123 (223)
Q Consensus 86 v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~n 123 (223)
=|+|.+++........-..|-+..+ +...|+++....
T Consensus 158 ~r~v~v~~~~~~~~~~~~giN~N~g-D~ati~~~~~~~ 194 (215)
T PF03211_consen 158 RRHVVVNNVVAGPGNSLVGINRNYG-DTATISNSCIKG 194 (215)
T ss_dssp EEEEEEEEEEEEEEEEEEEEEEGGT-TTEEEEEEEEEE
T ss_pred ceEEEEeeEEecCCcEEEEEECCCC-CeEEEEEEEecC
Confidence 5677888766554444455666666 778888887776
No 115
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=20.14 E-value=4.9e+02 Score=21.26 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=47.6
Q ss_pred eeEEEEeeEEcCC--ceEE-Eceec--CCCCEEEEEEEeEEEeCcceeeEEEeeCCC-CCeeEEeEEEEeEEEeCCCccE
Q 027435 60 TNLWIENVACGPG--HGIS-LGKEQ--QEAGVQNVTVTSVTFTGTQNGVRIKSWGRT-SGGFARNILFQHALMNNVDNPI 133 (223)
Q Consensus 60 ~nV~I~n~~~~~~--~gi~-iGs~~--~~~~v~nI~~~n~~~~~~~~gi~iks~~g~-~~g~v~nI~~~ni~~~~~~~~i 133 (223)
.||.|-|.+++.. .||= +|... ++...+||++.+..|+.++.--.+. |.|+ -...+.|-++||-.+.++..+-
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~-wvGGIv~sGF~ntlIENNVfDG~y~aa 80 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNID-WVGGIVTSGFYNTLIENNVFDGVYHAA 80 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCc-eeeeEEeccccccEEEeeeecccccce
Confidence 4788888888874 4766 55532 2345679999999999875332222 2120 0123567788999998886544
Q ss_pred EEE
Q 027435 134 IID 136 (223)
Q Consensus 134 ~i~ 136 (223)
.+.
T Consensus 81 i~~ 83 (198)
T PF08480_consen 81 IAQ 83 (198)
T ss_pred EEE
Confidence 333
Done!