BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027437
(223 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82531|PSB1_PETHY Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1
Length = 223
Score = 432 bits (1111), Expect = e-121, Method: Compositional matrix adjust.
Identities = 202/223 (90%), Positives = 214/223 (95%)
Query: 1 MTKQHPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMAS 60
MTKQ WSPYDNNGGTCVA+AGADYCV AADTRMSTGY+IL+RDYSKIIKLADKCVMAS
Sbjct: 1 MTKQQANWSPYDNNGGTCVAVAGADYCVIAADTRMSTGYNILTRDYSKIIKLADKCVMAS 60
Query: 61 SGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLD 120
SGFQADV+ALQK+LA+RHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLD
Sbjct: 61 SGFQADVRALQKVLASRHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLD 120
Query: 121 NEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAE 180
+EGKGCV+TYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAE
Sbjct: 121 SEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAE 180
Query: 181 AVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREYMELRKD 223
A+DLVKTCFASATERDIYT ++LEIV+LN GI RE MELRKD
Sbjct: 181 AIDLVKTCFASATERDIYTGDRLEIVILNASGIRREEMELRKD 223
>sp|P42742|PSB1_ARATH Proteasome subunit beta type-1 OS=Arabidopsis thaliana GN=PBF1 PE=1
SV=2
Length = 223
Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/223 (85%), Positives = 205/223 (91%)
Query: 1 MTKQHPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMAS 60
MTKQH WSPYDNNGGTCVAIAG+DYCV AADTRMSTGYSILSRDYSKI KLAD+ V++S
Sbjct: 1 MTKQHANWSPYDNNGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSS 60
Query: 61 SGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLD 120
SGFQADVKALQK+L +RHLIYQHQHNKQMSCPAM QLLSNTLY+KRFFPYY+FNVLGGLD
Sbjct: 61 SGFQADVKALQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLD 120
Query: 121 NEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAE 180
EGKGCV+TYDAVGSYERVGY +QGSGSTLIMPFLDNQLKSPSPLLLP QD+ TPLSEAE
Sbjct: 121 EEGKGCVFTYDAVGSYERVGYGAQGSGSTLIMPFLDNQLKSPSPLLLPKQDSNTPLSEAE 180
Query: 181 AVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREYMELRKD 223
AVDLVKT FASATERDIYT +KLEI++L DGI E M+LRKD
Sbjct: 181 AVDLVKTVFASATERDIYTGDKLEIMILKADGIKTELMDLRKD 223
>sp|O64464|PSB1_ORYSJ Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica
GN=PBF1 PE=2 SV=1
Length = 221
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 174/213 (81%), Positives = 194/213 (91%)
Query: 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKAL 70
Y+NNGGTCVAIAGADYCV AADTR+S GY+IL+RD+SKI +LADKC +ASSGFQ D+KAL
Sbjct: 9 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKAL 68
Query: 71 QKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTY 130
K LAAR L+YQHQHNK+MSCPAM QLLSNTLYYKRFFPYY+FNVLGGLD+EGKGCV+TY
Sbjct: 69 HKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVFTY 128
Query: 131 DAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFA 190
DAVGSYER GYS+QG+GS LIMP LDNQLKSPSPLLLPA+DAVTPLSE EAVDLVK FA
Sbjct: 129 DAVGSYERTGYSAQGTGSALIMPVLDNQLKSPSPLLLPARDAVTPLSETEAVDLVKDVFA 188
Query: 191 SATERDIYTANKLEIVVLNKDGIHREYMELRKD 223
SATERDIYT +KLEIVV+NK G REY++LRKD
Sbjct: 189 SATERDIYTGDKLEIVVINKAGTKREYIDLRKD 221
>sp|Q86A21|PSB1_DICDI Proteasome subunit beta type-1 OS=Dictyostelium discoideum GN=psmB1
PE=3 SV=1
Length = 236
Score = 233 bits (593), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 114/220 (51%), Positives = 152/220 (69%), Gaps = 4/220 (1%)
Query: 5 HPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTG-YSILSRDYSKIIKLADKCVMASSGF 63
H + Y +NGGT +A+AG DYCV A DTRMS G Y I +R Y+KI +L KCV+A+SG
Sbjct: 20 HGRFEAYVDNGGTVLAVAGKDYCVIAGDTRMSDGGYGIQTRKYTKIFQLTKKCVLATSGM 79
Query: 64 QADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEG 123
QAD ALQK L + ++ +H K MS PA+ Q LSNTLYYKRFFPYY+FN++ G+D +G
Sbjct: 80 QADTIALQKRLKSMLESFEKEHGKPMSTPAIAQFLSNTLYYKRFFPYYTFNLVAGVDEQG 139
Query: 124 KGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVD 183
+G ++TYDAVGS+ERV YSSQGSG+ L++P LDNQ+ + ++ V S + V
Sbjct: 140 EGWIWTYDAVGSHERVKYSSQGSGNQLVIPLLDNQVAKFNQQIVEGNKDV---SCEQVVS 196
Query: 184 LVKTCFASATERDIYTANKLEIVVLNKDGIHREYMELRKD 223
VK SA ERDIYT + +IVV++K+G+H E EL+ D
Sbjct: 197 FVKDSITSAGERDIYTGDFADIVVVDKNGVHWEKFELKLD 236
>sp|Q9IB84|PSB1A_CARAU Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A
PE=2 SV=1
Length = 238
Score = 211 bits (538), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 144/216 (66%), Gaps = 4/216 (1%)
Query: 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADV 67
+SPY NGGT +A+AG D+ + A+DTR+S GYSI SRD K KL D V+ SGF D
Sbjct: 27 FSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDC 86
Query: 68 KALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCV 127
L K++ AR +Y+H +NK M+ A+ +LS LY +RFFPYY +N++GGLD EG+G V
Sbjct: 87 LTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAV 146
Query: 128 YTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKT 187
Y++D VGSY+R Y + GS S ++ P LDNQ+ + + + V PLS+ +AV LVK
Sbjct: 147 YSFDPVGSYQRDTYKAGGSASAMLQPLLDNQIGFKN---MENVEQV-PLSQEKAVQLVKD 202
Query: 188 CFASATERDIYTANKLEIVVLNKDGIHREYMELRKD 223
F SA ERD+YT + L+I ++ K+GI E + LRKD
Sbjct: 203 VFISAAERDVYTGDALKICIITKEGIREEIVPLRKD 238
>sp|Q9IB83|PSB1B_CARAU Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B
PE=2 SV=1
Length = 237
Score = 211 bits (537), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 144/216 (66%), Gaps = 4/216 (1%)
Query: 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADV 67
+SPY NGGT +A+AG D+ + A+DTR+S GYSI SRD K KL D V+ SGF D
Sbjct: 26 FSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDC 85
Query: 68 KALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCV 127
L K++ AR +Y+H +NK M+ A+ +LS LY +RFFPYY +N++GGLD EG+G V
Sbjct: 86 LTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAV 145
Query: 128 YTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKT 187
Y++D VGSY+R Y + GS S ++ P LDNQ+ + + + V PLS+ +AV LVK
Sbjct: 146 YSFDPVGSYQRDTYKAGGSASAMLQPLLDNQIGFKN---MENVEQV-PLSQEKAVQLVKD 201
Query: 188 CFASATERDIYTANKLEIVVLNKDGIHREYMELRKD 223
F SA ERD+YT + L+I ++ K+GI E + LRKD
Sbjct: 202 VFISAAERDVYTGDALKICIITKEGIREEIVPLRKD 237
>sp|P20618|PSB1_HUMAN Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2
Length = 241
Score = 208 bits (529), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 103/217 (47%), Positives = 141/217 (64%), Gaps = 6/217 (2%)
Query: 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADV 67
+SPY NGGT +AIAG D+ + A+DTR+S G+SI +RD K KL DK V+ SGF D
Sbjct: 30 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDC 89
Query: 68 KALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCV 127
L K++ AR +Y+H +NK M+ A+ +LS LY +RFFPYY +N++GGLD EGKG V
Sbjct: 90 LTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAV 149
Query: 128 YTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV-TPLSEAEAVDLVK 186
Y++D VGSY+R + + GS S ++ P LDNQ+ + Q+ PLS A+ LVK
Sbjct: 150 YSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKN-----MQNVEHVPLSLDRAMRLVK 204
Query: 187 TCFASATERDIYTANKLEIVVLNKDGIHREYMELRKD 223
F SA ERD+YT + L I ++ K+GI E + LRKD
Sbjct: 205 DVFISAAERDVYTGDALRICIVTKEGIREETVSLRKD 241
>sp|Q2TBX6|PSB1_BOVIN Proteasome subunit beta type-1 OS=Bos taurus GN=PSMB1 PE=1 SV=1
Length = 241
Score = 206 bits (525), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 142/217 (65%), Gaps = 6/217 (2%)
Query: 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADV 67
+SPY NGGT +AIAG D+ + A+DTR+S G+SI +RD K KL DK V+ SGF D
Sbjct: 30 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDC 89
Query: 68 KALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCV 127
L K++ AR +Y+H +NK M+ A+ +LS LY +RFFPYY +N++GGLD EGKG V
Sbjct: 90 LTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAV 149
Query: 128 YTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV-TPLSEAEAVDLVK 186
Y++D VGSY+R + + GS S ++ P LDNQ+ + Q+ PLS A+ LVK
Sbjct: 150 YSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKN-----MQNVEHVPLSLDRAMRLVK 204
Query: 187 TCFASATERDIYTANKLEIVVLNKDGIHREYMELRKD 223
F SA ERD+YT + L++ ++ K+GI E + LRKD
Sbjct: 205 DVFISAAERDVYTGDALKVCIVTKEGIRGETVPLRKD 241
>sp|O09061|PSB1_MOUSE Proteasome subunit beta type-1 OS=Mus musculus GN=Psmb1 PE=1 SV=1
Length = 240
Score = 206 bits (525), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 141/217 (64%), Gaps = 6/217 (2%)
Query: 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADV 67
+SPY NGGT +AIAG D+ + A+DTR+S G+SI +RD K KL DK V+ SGF D
Sbjct: 29 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDC 88
Query: 68 KALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCV 127
L K++ AR +Y+H +NK M+ A+ +LS LY +RFFPYY +N++GGLD EGKG V
Sbjct: 89 LTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAV 148
Query: 128 YTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV-TPLSEAEAVDLVK 186
Y++D VGSY+R + + GS S ++ P LDNQ+ + Q+ PL+ A+ LVK
Sbjct: 149 YSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKN-----MQNVEHVPLTLDRAMRLVK 203
Query: 187 TCFASATERDIYTANKLEIVVLNKDGIHREYMELRKD 223
F SA ERD+YT + L I ++ K+GI E + LRKD
Sbjct: 204 DVFISAAERDVYTGDALRICIVTKEGIREETVPLRKD 240
>sp|P18421|PSB1_RAT Proteasome subunit beta type-1 OS=Rattus norvegicus GN=Psmb1 PE=1
SV=3
Length = 240
Score = 203 bits (517), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 140/217 (64%), Gaps = 6/217 (2%)
Query: 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADV 67
+SPY NGGT +AIAG D+ + A+DTR+S G+SI +RD K KL DK V+ SGF D
Sbjct: 29 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDC 88
Query: 68 KALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCV 127
L K++ AR +Y+H +NK M+ A+ +LS LY +RFFPYY +N++ GLD EGKG V
Sbjct: 89 LTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIEGLDEEGKGAV 148
Query: 128 YTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV-TPLSEAEAVDLVK 186
Y++D VGSY+R + + GS S ++ P LDNQ+ + Q+ PL+ A+ LVK
Sbjct: 149 YSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKN-----MQNVEHVPLTLDRAMRLVK 203
Query: 187 TCFASATERDIYTANKLEIVVLNKDGIHREYMELRKD 223
F SA ERD+YT + L I ++ K+GI E + LRKD
Sbjct: 204 DVFISAAERDVYTGDALRICIVTKEGIREETVPLRKD 240
>sp|P40304|PSB1_DROME Proteasome subunit beta type-1 OS=Drosophila melanogaster GN=Pros26
PE=2 SV=2
Length = 235
Score = 197 bits (501), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 142/220 (64%), Gaps = 2/220 (0%)
Query: 4 QHPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGF 63
+HP +SPY++NGG+ VAIAG D+ V AADTR+S+GY+I SR SK+ KL+ + V+ S+G
Sbjct: 18 KHPDFSPYESNGGSIVAIAGDDFAVIAADTRLSSGYNIHSRTQSKLFKLSPQTVLGSAGC 77
Query: 64 QADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEG 123
AD +L + R Y+H H + M+ A+ Q+LS +Y +RFFPYY N+L G+DNEG
Sbjct: 78 WADTLSLTGSIKVRMQSYEHTHLRTMTTEAVAQMLSIAMYNRRFFPYYVSNILAGIDNEG 137
Query: 124 KGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVD 183
KG VY+YD +G E+ Y + G+ TL+ P LDNQ+ + + L D + L++ AV
Sbjct: 138 KGVVYSYDPIGHCEKATYRAGGTAGTLLQPVLDNQIGHKN-MNLEDADKI-KLTKERAVS 195
Query: 184 LVKTCFASATERDIYTANKLEIVVLNKDGIHREYMELRKD 223
+ F SA ERDIYT + + I ++ KDGI + LR+D
Sbjct: 196 VASDTFISAAERDIYTGDSVLINIITKDGIEVRTLTLRQD 235
>sp|P23724|PSB6_YEAST Proteasome subunit beta type-6 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRE7 PE=1 SV=1
Length = 241
Score = 177 bits (448), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 131/221 (59%), Gaps = 5/221 (2%)
Query: 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADV 67
++PY +NGGT + IAG D+ V A DTR T YSI SR K+ D VM+++GF AD
Sbjct: 21 FNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADG 80
Query: 68 KALQKLLAARHLIYQHQHN-KQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGC 126
AL K Y HN K++S + + + + LY KRFFPYY ++ GLD +GKG
Sbjct: 81 DALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGA 140
Query: 127 VYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP----LSEAEAV 182
VY++D VGSYER + G+ ++LIMPFLDNQ+ + V LS E +
Sbjct: 141 VYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVI 200
Query: 183 DLVKTCFASATERDIYTANKLEIVVLNKDGIHREYMELRKD 223
LV+ F SATER I + LEI+++ KDG+ +E+ EL++D
Sbjct: 201 KLVRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD 241
>sp|Q9U794|PSB1_TRYBB Proteasome subunit beta type-1 OS=Trypanosoma brucei brucei PE=2
SV=1
Length = 258
Score = 175 bits (443), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/228 (42%), Positives = 136/228 (59%), Gaps = 15/228 (6%)
Query: 3 KQHPA-WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSR-DYSKIIKLADKCVMAS 60
K HP WSPY +NGGT AIAG++Y V ADTR++ + I +R D SK+ KL D+ +AS
Sbjct: 39 KGHPQHWSPYTDNGGTIAAIAGSNYVVLGADTRLNGDFCIHTRSDTSKLFKLTDRIFLAS 98
Query: 61 SGFQADVKALQKLLAARHLIYQHQHNKQM-SCPAMGQLLSNTLYYKRFFPYYSFNVLGGL 119
SG QAD LQ++L R YQ+ + ++ S A+ +L S LY +RFFPYY+FN++ G+
Sbjct: 99 SGMQADRLQLQQMLKYRIQWYQYNNGGKVPSTKAIAKLTSTMLYQRRFFPYYTFNMIVGI 158
Query: 120 DNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP---- 175
D +G G Y+YD VGS E Y + GS S+ + P LD LL Q VT
Sbjct: 159 DEKGAGVCYSYDPVGSTEPFRYGTCGSASSFVEPLLD--------CLLTRQHMVTQAPAD 210
Query: 176 LSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREYMELRKD 223
L+ EA+ ++K F A ERDI+T + + ++ DG+ E ELRKD
Sbjct: 211 LTMEEALGMLKNAFTGAAERDIFTGDTVCFHIITADGVGTEMFELRKD 258
>sp|P34286|PSB1_CAEEL Proteasome subunit beta type-1 OS=Caenorhabditis elegans GN=pbs-6
PE=1 SV=2
Length = 258
Score = 160 bits (405), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 129/218 (59%), Gaps = 5/218 (2%)
Query: 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTG-YSILSRDYSKIIKLADKCVMASSGFQAD 66
W+PY GG+ AI+G ++ + A+DTRM+ +IL+RD KI L D ++ +SGF D
Sbjct: 44 WNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGD 103
Query: 67 VKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGC 126
V L+K+L +R Y+ + MS +LLS LYY+RFFPYY+ +L G+D GKG
Sbjct: 104 VLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEHGKGA 163
Query: 127 VYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVK 186
V++YD +G ER+GYS+ G+ +I+PFLD Q+ + L L+ A+ L+K
Sbjct: 164 VFSYDPIGCIERLGYSASGAAEPMIIPFLDCQI---GHVTLSEGYERPELTLDRAISLMK 220
Query: 187 TCFASATERDIYTANKLEIVVLNKDG-IHREYMELRKD 223
F A ER+I T +K+ +V+ + +++ LR+D
Sbjct: 221 DSFRGAAEREISTGDKIHLVIAEAGKPVVVKFLPLRED 258
>sp|Q9UQY2|PSB6_SCHPO Probable proteasome subunit beta type-6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pam1 PE=3 SV=1
Length = 225
Score = 154 bits (390), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 122/228 (53%), Gaps = 20/228 (8%)
Query: 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADV 67
+ PY NGGT VAIAG + + A DTR GY+I +R ++ ++ D V+ +SGF+AD
Sbjct: 6 FDPYVQNGGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADA 65
Query: 68 KALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCV 127
AL K + R +Y H ++MS + ++ LY KRFFPYY + + G+D EGKG +
Sbjct: 66 LALVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGKGEI 125
Query: 128 YTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL------------KSPSPLLLPAQDAVTP 175
Y++D VGSYER + GS + I PFLDNQ+ K P L
Sbjct: 126 YSFDPVGSYEREWCRAGGSAANFITPFLDNQVNLHNQYVPGSHGKERKPRRL-------- 177
Query: 176 LSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREYMELRKD 223
L EA+ + F SA ER I + + + ++ K+G+ + L+KD
Sbjct: 178 LKLEEAMKITTDAFTSAGERHIEVGDSVLVKIITKEGVETRIIPLKKD 225
>sp|Q8SRH6|PSB6_ENCCU Probable proteasome subunit beta type-6 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=PRE7 PE=1 SV=1
Length = 290
Score = 134 bits (336), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 124/216 (57%), Gaps = 8/216 (3%)
Query: 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADV 67
+ PY++N GT + + D+ V A DTR S+ I SR+ SKI ++ D ++ +GF AD
Sbjct: 83 FDPYEDNSGTTICLKQGDFIVVAGDTRHSSSMVINSREMSKIFQVGD-FLLTGTGFYADT 141
Query: 68 KALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCV 127
+ + + I Q++ + ++ + LLS LY KRFFPYYSF VL G + +GK V
Sbjct: 142 HEVYVKMV--YEIRQYEVDDSINIHSAANLLSKILYSKRFFPYYSFCVLSGFE-KGKPYV 198
Query: 128 YTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKT 187
Y+YD +GS+ V GSG ++I P LD+ + + A++ T LS+ + + LV
Sbjct: 199 YSYDPIGSFGSVTCVCSGSGRSMIQPLLDSFIDKKN--WNNAEE--TQLSQEDCIRLVVK 254
Query: 188 CFASATERDIYTANKLEIVVLNKDGIHREYMELRKD 223
F SA ERD+ T + LE+ V+ ++ + RE LR+D
Sbjct: 255 AFNSAAERDVKTKDNLEVCVMRENQVMRETFPLRRD 290
>sp|A2BN27|PSB2_HYPBU Proteasome subunit beta 2 OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=psmB2 PE=3 SV=1
Length = 212
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 107/210 (50%), Gaps = 16/210 (7%)
Query: 14 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKL 73
G T V I D+ V AAD R + GY + + KIIK+ D M ++G AD + L +
Sbjct: 14 KGTTTVGIVFRDFVVLAADRRATAGYFVAHKRTKKIIKITDYMAMTTAGLVADAQMLAEW 73
Query: 74 LAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV 133
LA Y+ + ++MS A Q LS L+ +F+PY +LGG D + + +Y D
Sbjct: 74 LANHTHYYEIVNKRRMSIHAAAQYLSIILHSAKFYPYIVQLLLGGYDTQPR--LYNIDWF 131
Query: 134 GSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT 193
GS Y + GSGS + +++Q SP+ LS EAV+L K AS+
Sbjct: 132 GSVTEEKYVATGSGSPTAIGVIEDQY-SPN------------LSMEEAVELAKRAVASSI 178
Query: 194 ERDIYTANKLEIVVLNKDGIHREYMELRKD 223
RD +T N +++VV+ KD +REY KD
Sbjct: 179 RRDTFTGNGVDVVVIGKD-FYREYSFELKD 207
>sp|A1RX71|PSB2_THEPD Proteasome subunit beta 2 OS=Thermofilum pendens (strain Hrk 5)
GN=psmB2 PE=3 SV=1
Length = 204
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 104/197 (52%), Gaps = 14/197 (7%)
Query: 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLA 75
GT V I +D V AA+ R+S G ++S+ K+ ++ DK MAS+G AD++ L +++
Sbjct: 6 GTTVGIRVSDGVVLAAEKRVSYGLYLMSKSGKKVYRILDKMGMASAGLMADMQTLARIVE 65
Query: 76 ARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGS 135
A +Y+ N + +LLS LY +R FPYY+ V+GGLD EG +Y+ D +G+
Sbjct: 66 AEMRLYELDSNISPKVWTVAKLLSYILYERRLFPYYAEIVVGGLDEEGS-HLYSLDPIGA 124
Query: 136 YERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 195
Y + GSG+ L + +++ K +S EA+ L +A +R
Sbjct: 125 IIEDDYVALGSGTQLAISIVESNYKK-------------DMSLDEALSLALKSVYAAMKR 171
Query: 196 DIYTANKLEIVVLNKDG 212
D + + ++++V+ K G
Sbjct: 172 DAASGDGVDVLVIGKSG 188
>sp|C5A2D5|PSB2_THEGJ Proteasome subunit beta 2 OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=psmB2 PE=3 SV=1
Length = 200
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 108/211 (51%), Gaps = 16/211 (7%)
Query: 13 NNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQK 72
G T V I + V AADT+ S G + + + KI+ + D+ + ++G DV+AL +
Sbjct: 5 KTGTTTVGIKVKEGVVLAADTQASLGNMVETLNIRKILPITDRIAITTAGSVGDVQALAR 64
Query: 73 LLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDA 132
+L A+ YQ + M+ AM LLSN L ++FPY ++GG + K + + DA
Sbjct: 65 MLEAQARYYQFTWGRPMTTRAMANLLSNILNENKWFPYMVQIIIGGYVD--KPELASVDA 122
Query: 133 VGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASA 192
+G Y++ GSGS + +++ + +S EA +L +A
Sbjct: 123 LGGLVFEKYTATGSGSPFAIAIIEDGYRE-------------DMSIEEAKELAVRAVKTA 169
Query: 193 TERDIYTAN-KLEIVVLNKDGIHREYMELRK 222
+RD+YT K+++VV+ KDG+ E++E ++
Sbjct: 170 GKRDVYTGERKVQVVVITKDGMKEEFVEFKE 200
>sp|C5A7L1|PSB1_THEGJ Proteasome subunit beta 1 OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=psmB1 PE=3 SV=1
Length = 201
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 16/208 (7%)
Query: 9 SPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVK 68
SP G T V + D V AAD R + G + S++ +K+ ++ D +A +G D+
Sbjct: 4 SPSAMKGTTTVGVVCRDGVVLAADRRATLGNMVTSKEVTKVFQIDDHLAIAGAGLVGDIL 63
Query: 69 ALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVY 128
+L +LL A +Y+ + ++MS A+ L+SN L+ R PY+++ ++GG D + + +Y
Sbjct: 64 SLVRLLRAEAKLYRAKVGREMSVKALATLVSNVLHGSRHLPYFAWFLIGGYDVKPR--LY 121
Query: 129 TYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTC 188
+ DA G + + GSG + L+ L E +DL
Sbjct: 122 SIDAAGGVTEERFIAAGSGMEFALALLEENFSDGMGL-------------DEGIDLAVRA 168
Query: 189 FASATERDIYTANKLEIVVLNKDGIHRE 216
+A RD+YT + +V + K+G +RE
Sbjct: 169 VKAAIRRDVYTGEGVTVVAITKEG-YRE 195
>sp|Q5JHL8|PSB2_PYRKO Proteasome subunit beta 2 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=psmB2 PE=3 SV=1
Length = 199
Score = 97.8 bits (242), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 106/211 (50%), Gaps = 16/211 (7%)
Query: 13 NNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQK 72
G T V I + V AADT+ S + + + + KI+ + D+ + ++G DV+AL +
Sbjct: 4 KTGTTTVGIRTKEGVVLAADTQASLDHMVETLNIRKILPITDRIAITTAGSVGDVQALAR 63
Query: 73 LLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDA 132
+L A YQ + M+ AM LLSN L ++FPY ++GG E + D
Sbjct: 64 MLEAEARYYQFTWGRPMTAKAMAHLLSNILNENKWFPYMVQIIIGGYVEE--PTLANLDP 121
Query: 133 VGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASA 192
+G Y++ GSGS + L++ + +S EA +L +A
Sbjct: 122 LGGLIFDDYTATGSGSPFAIAVLEDGFRK-------------DMSLEEAKELAVRAVRTA 168
Query: 193 TERDIYTAN-KLEIVVLNKDGIHREYMELRK 222
+RD+YT + K+++VV++KDG+ E++E ++
Sbjct: 169 GKRDVYTGDRKVQVVVISKDGMKEEFVEFKE 199
>sp|B6YXV3|PSB2_THEON Proteasome subunit beta 2 OS=Thermococcus onnurineus (strain NA1)
GN=psmB2 PE=3 SV=1
Length = 200
Score = 97.8 bits (242), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 100/201 (49%), Gaps = 16/201 (7%)
Query: 21 IAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLI 80
I D V AADT+ S G+ + + + KII + D+ + ++G DV+AL ++L A
Sbjct: 13 IKAKDGIVLAADTQASLGHMVETLNIRKIIPITDRIAITTAGSVGDVQALARMLEAEARY 72
Query: 81 YQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVG 140
YQ K MS AM LLSN L ++FPY +LGG E + D +G
Sbjct: 73 YQFTWGKPMSTKAMANLLSNILNGNKWFPYLVQIILGGYVEE--PTLANLDPLGGLIFDD 130
Query: 141 YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTA 200
Y++ GSGS + L++ K +S EA +L +A +RD+YT
Sbjct: 131 YTATGSGSPFAIAVLEDGYKK-------------DMSIEEAKELAVRAVRTAGKRDVYTG 177
Query: 201 N-KLEIVVLNKDGIHREYMEL 220
+ K++IV + K+GI E++E
Sbjct: 178 SRKIQIVAITKEGITEEFVEF 198
>sp|A3MXQ6|PSB2_PYRCJ Proteasome subunit beta 2 OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=psmB2 PE=3 SV=1
Length = 203
Score = 97.4 bits (241), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 14/207 (6%)
Query: 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLL 74
G T V I + V AA+ R+S G+ LS K+ + D+ +AS+G AD++ L K+L
Sbjct: 8 GATAVGIKTKEGVVLAAEKRVSYGFYTLSTAGKKVFIVNDRLAIASAGIIADMQTLAKIL 67
Query: 75 AARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVG 134
Y+ + ++ S AM +LLS ++ +RF P+++ ++GG+D+EG + D +G
Sbjct: 68 KLNAKAYELEMKRKPSVHAMAKLLSVVMFSRRFMPFFAEVLVGGIDDEGPHLI-VMDPLG 126
Query: 135 SYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATE 194
S Y++ G+G+ L + +D K L QDA L +A E
Sbjct: 127 SLIEDNYAALGTGAKLAIAIIDASYKPDMSL----QDAKK---------LAVQALKAALE 173
Query: 195 RDIYTANKLEIVVLNKDGIHREYMELR 221
RD + +++VV++K+G E ++L+
Sbjct: 174 RDPVSGGGIDLVVIDKNGAREEEVKLQ 200
>sp|B1YDJ0|PSB2_PYRNV Proteasome subunit beta 2 OS=Pyrobaculum neutrophilum (strain DSM
2338 / JCM 9278 / V24Sta) GN=psmB2 PE=3 SV=1
Length = 203
Score = 97.1 bits (240), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 105/207 (50%), Gaps = 14/207 (6%)
Query: 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLL 74
G T V I D V AA+ R+S G+ LS K+ + DK +AS+G AD++AL K+L
Sbjct: 8 GATAVGIRAKDGVVLAAEKRVSYGFYTLSTAGKKVFIVNDKLAIASAGIIADMQALAKIL 67
Query: 75 AARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVG 134
Y+ + K+ + AM +LLS ++ +RF P+Y+ ++GG+D EG + D +G
Sbjct: 68 KLNARSYELEVKKKPTVKAMAKLLSVVMFSRRFMPFYAEVLVGGVDEEGPHLI-VMDPLG 126
Query: 135 SYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATE 194
S Y++ G+G+ L + LD + ++ EA L +A E
Sbjct: 127 SLIEDNYAALGTGAKLAVSLLDASYRP-------------DMTVEEAKKLAVQAVKAAIE 173
Query: 195 RDIYTANKLEIVVLNKDGIHREYMELR 221
RD + +++VV++ G E ++++
Sbjct: 174 RDPVSGGGIDLVVVDGGGAREEEVKVQ 200
>sp|Q5JDJ9|PSB1_PYRKO Proteasome subunit beta 1 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=psmB1 PE=3 SV=1
Length = 203
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 16/206 (7%)
Query: 14 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKL 73
G T V I D V AAD R S G +LS +K+ ++ D +A +G D+ +L +L
Sbjct: 6 KGTTTVGIVCKDGVVLAADRRASLGNMVLSERVTKVFQIDDHLAIAGAGTVGDILSLVRL 65
Query: 74 LAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV 133
L A +Y+ + +++MS A+ L SN L+ R F Y ++ ++GG D+ + +Y+ DA
Sbjct: 66 LRAEAKLYRAKVSREMSVKALATLTSNILHSGRGFAYMAWFLVGGYDSAPR--LYSIDAA 123
Query: 134 GSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT 193
G +++ GSG L+ + PL E V L +AT
Sbjct: 124 GGVTEDRFTAAGSGMEFAFSVLEENYRDGIPL-------------EEGVKLALRAIKAAT 170
Query: 194 ERDIYTANKLEIVVLNKDGIHREYME 219
+RD++T + +V + ++G +RE+ E
Sbjct: 171 KRDVFTGGGVTLVTITEEG-YREWSE 195
>sp|B6YSW2|PSB1_THEON Proteasome subunit beta 1 OS=Thermococcus onnurineus (strain NA1)
GN=psmB1 PE=3 SV=1
Length = 203
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 103/209 (49%), Gaps = 18/209 (8%)
Query: 14 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKL 73
G T V I D V AAD R S G +LS++ +K+ ++ D +A +G D+ +L +L
Sbjct: 6 KGTTTVGIVCKDGVVLAADRRASLGNMVLSKEVTKVFQIDDHLALAGAGSVGDILSLVRL 65
Query: 74 LAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV 133
L A +Y+ + +++S A+ L SN L+ RF PY+ + ++ G D K +Y+ D
Sbjct: 66 LRAEVKLYRAKVGREISVKALATLTSNILHGSRFMPYFGWFLIAGYDE--KPALYSLDMA 123
Query: 134 GSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT 193
G +++ GSG L L++ K ++ E V L AT
Sbjct: 124 GGVTEDKFTAAGSGMELAFAVLEDGYKD-------------DINVEEGVKLALKAIKIAT 170
Query: 194 ERDIYTANKLEIVVLNKDG---IHREYME 219
RD++T + + +V + ++G ++RE +E
Sbjct: 171 RRDVFTGDGITLVTVTEEGYRELNREEIE 199
>sp|Q9YER0|PSB2_AERPE Proteasome subunit beta 2 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=psmB2 PE=3
SV=2
Length = 219
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 15/206 (7%)
Query: 13 NNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQK 72
+G T V + +D+ + AAD R + G+ I SR KI+ L++ M SG AD + L
Sbjct: 23 RSGTTTVGLIASDHVILAADKRATAGFLIASRRVKKIVMLSNYVAMTVSGLVADAQILSD 82
Query: 73 LLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDA 132
+L +Y+ + + S + LLSN L+ +FFPY ++GG D + + +YT D
Sbjct: 83 VLREEIRLYEMTNKVKPSVRFVASLLSNILFSSKFFPYIVQLIVGGYDTQPR--LYTLDL 140
Query: 133 VGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASA 192
GS Y++ GSGS + L+ + + LS EA+ + T SA
Sbjct: 141 FGSITEDKYTATGSGSPIAYGVLEERYRE-------------DLSVEEAIKVATTAIRSA 187
Query: 193 TERDIYTANKLEIVVLNKDGIHREYM 218
RD + + ++VV+ G +++
Sbjct: 188 VLRDAASGDGADVVVIGPQGYEEKFI 213
>sp|O50110|PSB2_PYRHO Proteasome subunit beta 2 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=psmB2 PE=3 SV=1
Length = 207
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 99/198 (50%), Gaps = 15/198 (7%)
Query: 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLL 74
G T V I D V AAD R S G I +R+ +KI K+ + +A +G D+ L +LL
Sbjct: 10 GTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
Query: 75 AARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVG 134
A +Y Q K+MS A+ LL+N + ++FPY ++ ++GG D + K +Y+ D VG
Sbjct: 70 RAEAKLYYSQSGKRMSVKALATLLANIMNGAKYFPYLAWFLVGGYDEKPK--LYSVDMVG 127
Query: 135 SYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATE 194
Y++ GSG LD++ K L+ E + L +A +
Sbjct: 128 GITEDKYATAGSGMEFAYSILDSEYKD-------------NLTLEEGIKLAVKAINTAIK 174
Query: 195 RDIYTANKLEIVVLNKDG 212
RD+++ + + +V + K+G
Sbjct: 175 RDVFSGDGILVVTITKEG 192
>sp|C6A2V9|PSB1_THESM Proteasome subunit beta 1 OS=Thermococcus sibiricus (strain MM 739
/ DSM 12597) GN=psmB1 PE=3 SV=1
Length = 207
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 100/216 (46%), Gaps = 19/216 (8%)
Query: 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADV 67
W+ G T V I D V AD R S G ++S+ +KI ++ D +A +G D+
Sbjct: 2 WALDKIKGTTTVGIVCKDGVVLTADRRASLGNMVISKGVTKIFQVDDHLALAGAGAVGDI 61
Query: 68 KALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCV 127
+L + L A +Y+ + K+MS A+ L SN L +++ PY+ + ++GG D K +
Sbjct: 62 LSLVRALRAESKLYRAKVGKEMSTKALATLTSNILSGRKYLPYFGWFLIGGYDE--KPSL 119
Query: 128 YTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKT 187
Y+ D G Y S GSG LDN+ L V L
Sbjct: 120 YSIDMAGGITEDKYVSAGSGMEFAYSILDNEYSEKITL-------------NNGVKLAIK 166
Query: 188 CFASATERDIYTANKLEIVVLNKDGIHREYMELRKD 223
+A +RD++T + + +V ++++G Y EL K+
Sbjct: 167 AINAAIKRDVFTGDGIMVVTIDREG----YRELSKE 198
>sp|Q8ZST5|PSB2_PYRAE Proteasome subunit beta 2 OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=psmB2 PE=3 SV=1
Length = 203
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 104/207 (50%), Gaps = 14/207 (6%)
Query: 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLL 74
G T V I D V AA+ R+S G+ LS K+ + DK +AS+G AD++ L K+L
Sbjct: 8 GATAVGIKAKDGVVLAAEKRVSYGFYTLSSAGKKVFVIDDKLAIASAGIIADMQTLAKIL 67
Query: 75 AARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVG 134
Y+ + ++ S +M +LLS ++ +RF P+++ ++GG+D EG + D +G
Sbjct: 68 KLNAKAYELEMKRKPSTHSMARLLSVIMFSRRFMPFFAEVLVGGIDEEGPHLI-VMDPLG 126
Query: 135 SYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATE 194
S Y++ G+G+ L + LD + ++ EA L +A E
Sbjct: 127 SLIEDNYAALGTGAKLAVAVLDTGYRP-------------DITVEEAKKLAVQALKAAIE 173
Query: 195 RDIYTANKLEIVVLNKDGIHREYMELR 221
RD + +++ +++K+G E + ++
Sbjct: 174 RDPVSGGGIDLAIVDKNGAREEEVRVQ 200
>sp|A2BN24|PSB1_HYPBU Proteasome subunit beta 1 OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=psmB1 PE=3 SV=1
Length = 204
Score = 94.4 bits (233), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 103/199 (51%), Gaps = 13/199 (6%)
Query: 13 NNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQK 72
G T V I GA Y V AA+ R+S G I+S+ K+ K+ D +A +G AD++A+ K
Sbjct: 6 GTGATAVGIRGAGYVVLAAEKRVSYGGFIISKTARKVYKITDYLGLALAGLFADLQAISK 65
Query: 73 LLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDA 132
+L A Y +++S A+ +LL+ LY +++P+ S ++GGL+ +G +Y D
Sbjct: 66 ILRAEIEYYNIVTGRRISVRAVARLLATILYSYKYYPFLSETLVGGLEADGTAKLYVMDP 125
Query: 133 VGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASA 192
+GS Y++ GSG+ + + L+N +S +A L +A
Sbjct: 126 LGSLIEDDYAAIGSGAPIAIGILENGYSK-------------DMSVDDAKKLAIAAVRAA 172
Query: 193 TERDIYTANKLEIVVLNKD 211
ERD + + ++++V+ ++
Sbjct: 173 IERDAMSGDGIDLLVIRRE 191
>sp|A1RSJ8|PSB1_PYRIL Proteasome subunit beta 1 OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=psmB1 PE=3 SV=1
Length = 203
Score = 94.4 bits (233), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 104/207 (50%), Gaps = 14/207 (6%)
Query: 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLL 74
G T V I D V AA+ R+S G+ LS K+ + DK +AS+G AD++ L ++L
Sbjct: 8 GATAVGIKAKDGVVLAAEKRVSYGFYTLSSAGKKVFIINDKLAIASAGIIADMQTLARIL 67
Query: 75 AARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVG 134
+ Y+ + K+ + AM +LLS ++ +R P+Y+ ++GG+D EG + D +G
Sbjct: 68 KLNVMSYELEVRKKPTVRAMAKLLSIIMFSRRLLPFYAEVLVGGVDEEGPHLI-VMDPLG 126
Query: 135 SYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATE 194
S Y++ G+G+ L + LD + +S EA L +A E
Sbjct: 127 SLIEDNYAALGTGAKLAVSLLDATYRP-------------DISLQEAKKLAVQAIKAAIE 173
Query: 195 RDIYTANKLEIVVLNKDGIHREYMELR 221
RD + +++ V++ +G E ++++
Sbjct: 174 RDPVSGGGIDLAVVDNNGAREEEVKIQ 200
>sp|C6A3R1|PSB2_THESM Proteasome subunit beta 2 OS=Thermococcus sibiricus (strain MM 739
/ DSM 12597) GN=psmB2 PE=3 SV=1
Length = 199
Score = 94.0 bits (232), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 104/211 (49%), Gaps = 16/211 (7%)
Query: 13 NNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQK 72
G T V I D V AADT+ S + + + + KI+ + D+ + ++G D++AL +
Sbjct: 4 KTGTTTVGIKLKDGVVLAADTQASLDHMVETLNIKKILPITDRIAITTAGSVGDLQALAR 63
Query: 73 LLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDA 132
+L A YQ K M+ AM LLSN L ++FPY ++GG E + + D
Sbjct: 64 MLEAEAKYYQFTWGKPMTAKAMANLLSNILNESKWFPYMVQIIIGGYVEE--PTLASLDP 121
Query: 133 VGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASA 192
+G Y++ GSGS + L++ K +S +A +L +A
Sbjct: 122 LGGLIFDNYTTTGSGSPFAIAILEDGYKE-------------DMSIEDARELAIKAVRTA 168
Query: 193 TERDIYTAN-KLEIVVLNKDGIHREYMELRK 222
+RD+YT K++++ + K+G+ E++E ++
Sbjct: 169 GKRDVYTGERKIQVITITKEGMKEEFVEFKE 199
>sp|Q8U125|PSB2_PYRFU Proteasome subunit beta 2 OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=psmB2 PE=3 SV=1
Length = 206
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 102/203 (50%), Gaps = 16/203 (7%)
Query: 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLL 74
G T V + + V AADTR S G I +++ +KI K+ + +A +G D+ L +LL
Sbjct: 10 GTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
Query: 75 AARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVG 134
A +Y+ K+MS A+ LL+N L ++FPY + ++GG D + + +++ D VG
Sbjct: 70 KAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGWFLVGGYDEKPR--LFSVDMVG 127
Query: 135 SYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATE 194
Y++ GSG LD++ + +S + + L A +
Sbjct: 128 GITEDNYAAAGSGMEFAYSILDSEYRE-------------EMSVNDGIKLAVKAINVAIK 174
Query: 195 RDIYTANKLEIVVLNKDGIHREY 217
RD++T + L +V + KDG ++EY
Sbjct: 175 RDVFTGDGLLVVTITKDG-YKEY 196
>sp|A7I841|PSB_METB6 Proteasome subunit beta OS=Methanoregula boonei (strain 6A8)
GN=psmB PE=3 SV=1
Length = 213
Score = 90.5 bits (223), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 102/199 (51%), Gaps = 15/199 (7%)
Query: 14 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKL 73
G T V + A + A + R + GY I S+ K+ ++AD+ M +G D + L ++
Sbjct: 10 TGTTTVGLVFAGGVILATEKRATMGYMIASKRAKKVYQIADRIGMTIAGGVGDAQQLARI 69
Query: 74 LAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV 133
+ +YQ + +++++ A LLSN L R+FPYY ++GG+D+ G VY+ DA+
Sbjct: 70 ITVECNLYQIRRSREITVGAASTLLSNYLNQNRYFPYYVQLLVGGIDDHGP-SVYSVDAM 128
Query: 134 -GSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASA 192
G+ + S GSGS + L+++ + P ++E EAV+L SA
Sbjct: 129 GGATKEEDIVSTGSGSPMAYGVLEDRYR-------PG------MNEDEAVELAVRALRSA 175
Query: 193 TERDIYTANKLEIVVLNKD 211
+RD + + +VV+ KD
Sbjct: 176 MKRDAGSGEGIHVVVITKD 194
>sp|A4WMZ0|PSB2_PYRAR Proteasome subunit beta 2 OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=psmB2 PE=3 SV=1
Length = 203
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 106/207 (51%), Gaps = 14/207 (6%)
Query: 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLL 74
G T V I D V AA+ R+S G+ LS K+ + DK +AS+G AD+++L +++
Sbjct: 8 GATAVGIKAKDGVVLAAEKRVSYGFYTLSSAGRKVFVIDDKLAIASAGIIADMQSLARIV 67
Query: 75 AARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVG 134
Y+ + K+ + +M +LLS ++ +R+ P+++ ++GG+D EG + D +G
Sbjct: 68 KINAKAYELETRKKPTVRSMAKLLSVIMFSRRYMPFFAEVLVGGVDEEGSHLI-VMDPLG 126
Query: 135 SYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATE 194
S Y++ G+G+ L + LD + L QDA L +A E
Sbjct: 127 SLIEDNYAALGTGAKLAISVLDTGYREDITL----QDAKK---------LAVKALKAAIE 173
Query: 195 RDIYTANKLEIVVLNKDGIHREYMELR 221
RD + +++V++++ G E ++++
Sbjct: 174 RDPVSGGGIDLVLIDQTGAKEEEVKVQ 200
>sp|A8AA46|PSB1_IGNH4 Proteasome subunit beta 1 OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=psmB1 PE=3 SV=1
Length = 198
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 15/194 (7%)
Query: 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLL 74
G T V I D V AA+ RMS G I+S+ K+ K+ D+ MA +G AD++A+ + L
Sbjct: 5 GATAVGIKVKDGVVLAAERRMSYGGFIMSKAARKVFKVGDRMGMACAGLYADMQAIARAL 64
Query: 75 AARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVG 134
Y+ + ++M + +LL LY + FP + V GG D+E + ++ D VG
Sbjct: 65 ENEIRYYEISNKRKMKVRSAARLLGLILYSNKLFPLMTETVFGGYDDEPR--IFVLDPVG 122
Query: 135 SYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATE 194
S YS+ G+G+ L M LD + + +S EA +L A+
Sbjct: 123 SVIEEKYSAVGTGAPLAMALLDKEYRE-------------DMSLEEAQNLAIESVKVASG 169
Query: 195 RDIYTANKLEIVVL 208
RD + + ++++V+
Sbjct: 170 RDSLSGDGIDVLVI 183
>sp|Q46G14|PSB_METBF Proteasome subunit beta OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=psmB PE=3 SV=1
Length = 211
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 99/202 (49%), Gaps = 15/202 (7%)
Query: 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLL 74
G T V + D V A++ R + G I S+ K+ ++ D M ++G D + L +L+
Sbjct: 9 GTTTVGVVCTDGIVLASEQRATMGNFIASKTAKKVYQIDDLVAMTTAGSVGDAQQLVRLV 68
Query: 75 AARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV- 133
+Y+ + N+ M+ + L+SN L R++P ++GG+D G G +Y+ DA+
Sbjct: 69 NVESQLYKMRRNESMTIKGIATLMSNFLNSNRYYPMMVQLLIGGVDKNGPG-IYSLDALG 127
Query: 134 GSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT 193
GS E S+ GSGS + L++Q + ++ E +DL +AT
Sbjct: 128 GSIEETRISATGSGSPMAYGVLEDQYRE-------------DMTVKEGLDLAIRAIHNAT 174
Query: 194 ERDIYTANKLEIVVLNKDGIHR 215
+RD + +++VV+ K+ R
Sbjct: 175 KRDSASGENIDVVVITKEAFRR 196
>sp|Q4JAY3|PSB1_SULAC Proteasome subunit beta 1 OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=psmB1 PE=3 SV=1
Length = 195
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 105/204 (51%), Gaps = 15/204 (7%)
Query: 17 TCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAA 76
T + I D V AA+ R+S G +LS+ K+ KL + +A +G D++ L +++
Sbjct: 7 TAIGIKTKDGVVLAAERRLSYGDFVLSKSARKVFKLG-RFGIAGAGIVGDIQTLTRIMNV 65
Query: 77 RHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSY 136
Y+ +++++S A +LLS LY + PY S + GG+D +G ++ D +GS
Sbjct: 66 EIKYYEMYNSRKISARAAAKLLSVILYQNKVLPYISELLFGGVDEDGP-KLFILDPIGSL 124
Query: 137 ERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERD 196
Y++ GSG+ + + L+ + L+ A +L SA ERD
Sbjct: 125 IEDSYAAVGSGARVAIGVLEAEYNE-------------SLTSEAAKELAIKSMKSAVERD 171
Query: 197 IYTANKLEIVVLNKDGIHREYMEL 220
+ + + ++I+++NK+ I+ +++++
Sbjct: 172 VMSGDGIDILIINKNNIYEDFIKI 195
>sp|Q9V0N9|PSB2_PYRAB Proteasome subunit beta 2 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=psmB2 PE=3 SV=1
Length = 207
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 99/202 (49%), Gaps = 16/202 (7%)
Query: 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLL 74
G T V I +D V AAD R S G + +++ +KI K+ + +A +G D+ L +LL
Sbjct: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
Query: 75 AARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVG 134
A +Y Q K+MS A+ LL+N L R PY ++ ++GG D + + +Y+ D +G
Sbjct: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPR--LYSVDMMG 127
Query: 135 SYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATE 194
Y + GSG LD++ + L E + + SA +
Sbjct: 128 GITEDKYVAAGSGMEFAYSVLDSEYRE-------------DLKVREGIKIAVEAINSAIK 174
Query: 195 RDIYTANKLEIVVLNKDGIHRE 216
RD+++ + + +V + ++G +RE
Sbjct: 175 RDVFSGDGIMVVTITEEG-YRE 195
>sp|Q9V247|PSB1_PYRAB Proteasome subunit beta 1 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=psmB1 PE=3 SV=1
Length = 197
Score = 87.4 bits (215), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 99/207 (47%), Gaps = 16/207 (7%)
Query: 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLL 74
G T V I D + AADT+ S + + + + KII + D+ + ++G DV+ + ++L
Sbjct: 6 GTTTVGIRVKDGVILAADTQASLDHMVETLNIRKIIPITDRIAITTAGSVGDVQMIARIL 65
Query: 75 AARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVG 134
A YQ + M+ AM LLSN L ++FPY ++GG +E + D +G
Sbjct: 66 EAEARYYQFTWGRPMTTRAMANLLSNILNENKWFPYLVQIIIGGYVDE--PTIANLDPLG 123
Query: 135 SYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATE 194
Y++ GSG+ + L+ + L +A +L +A
Sbjct: 124 GLIFDDYTATGSGTPFAIAILEEGYRK-------------NLGIEKAKELAIKAVKAAGA 170
Query: 195 RDIYT-ANKLEIVVLNKDGIHREYMEL 220
RD+YT + K+++V + KDG+ E++ L
Sbjct: 171 RDVYTGSKKIQVVTITKDGMKEEFVTL 197
>sp|Q9P992|PSB_METTE Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3
SV=1
Length = 210
Score = 87.0 bits (214), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 101/202 (50%), Gaps = 15/202 (7%)
Query: 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLL 74
G T V + D V A++ R + G+ I S+ K+ ++ D M ++G D + L +L+
Sbjct: 9 GTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLV 68
Query: 75 AARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV- 133
+ +Y+ + ++ M+ + L+SN L R++P ++GG+D G G +Y+ DA+
Sbjct: 69 SVESQLYKMRRDESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPG-IYSLDAMG 127
Query: 134 GSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT 193
GS E S+ GSGS + L++Q + ++ E +DL +AT
Sbjct: 128 GSIEETRISATGSGSPMAYGVLEDQYRE-------------NMTVKEGLDLAIRAIHNAT 174
Query: 194 ERDIYTANKLEIVVLNKDGIHR 215
+RD + +++VV+ K+ R
Sbjct: 175 KRDSASGENIDVVVITKEAFKR 196
>sp|Q8TJB5|PSB_METAC Proteasome subunit beta OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=psmB PE=3 SV=1
Length = 210
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 105/213 (49%), Gaps = 18/213 (8%)
Query: 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLL 74
G T V + D V A++ R + G+ I S+ K+ ++ D M ++G D + L +L+
Sbjct: 9 GTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLV 68
Query: 75 AARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV- 133
+ +Y+ + N+ M+ + L+SN L R++P ++GG+D G +Y+ DA+
Sbjct: 69 SVESQLYKMRRNESMTIKGIATLMSNFLNANRYYPMMVQLLIGGVDKNGP-AIYSLDAMG 127
Query: 134 GSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT 193
GS E S+ GSGS + L++Q K ++ E +DL +A
Sbjct: 128 GSIEETRISATGSGSPMAYGVLEDQYKE-------------DIAVKEGLDLAIRAIHNAM 174
Query: 194 ERDIYTANKLEIVVLNKDGIHR---EYMELRKD 223
+RD + +++VV+ K+ R E ++ R+D
Sbjct: 175 KRDSASGENIDVVVITKEAFKRLDPEEVKSRRD 207
>sp|Q8U4C9|PSB1_PYRFU Proteasome subunit beta 1 OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=psmB1 PE=3 SV=1
Length = 196
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 16/207 (7%)
Query: 13 NNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQK 72
G T V I D V AADT+ S + + + + KII + D+ + ++G DV+ L +
Sbjct: 4 KTGTTTVGIKVKDGVVLAADTQASLDHMVETLNIKKIIPITDRIAITTAGSVGDVQMLAR 63
Query: 73 LLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDA 132
L A Y + M+ AM LLSN L R+FPY ++GG +E + D
Sbjct: 64 YLEAEARYYYFTWGRPMTTKAMANLLSNILNENRWFPYLVQIIIGGYVDE--PTIANLDP 121
Query: 133 VGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASA 192
G Y++ GSG+ + L+ + L+ EA +L +A
Sbjct: 122 FGGLIFDDYTATGSGTPFAIAVLEEGYRE-------------DLTIEEAKELAIRAVRAA 168
Query: 193 TERDIYT-ANKLEIVVLNKDGIHREYM 218
RD+YT + K+++V + KDG+ E++
Sbjct: 169 GRRDVYTGSKKVQVVTITKDGMKEEFV 195
>sp|A8AB58|PSB2_IGNH4 Proteasome subunit beta 2 OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=psmB2 PE=3 SV=1
Length = 212
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 15/206 (7%)
Query: 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLL 74
G T V I V AAD R + G I+ + KI+K++D M ++G AD + L +L
Sbjct: 13 GTTTVGIRSEKAVVLAADKRATAGNFIVHKRVEKIVKISDYMAMTTAGLVADAQVLADVL 72
Query: 75 AARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVG 134
Y+ H K+MS A LSN L+ RF+PY ++GG D + +Y+ D G
Sbjct: 73 RMEVKNYELFHKKRMSVKAAATFLSNVLHSARFYPYIVQLLVGGFDTAPR--LYSLDWFG 130
Query: 135 SYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATE 194
+ + GSGS + + ++ + P D E V+L +AT
Sbjct: 131 TVAEEEFLVTGSGSPMAVGVIEAEYN-------PNMDL------EELVNLAVRAVFAATR 177
Query: 195 RDIYTANKLEIVVLNKDGIHREYMEL 220
RD + +++ V++++GI + L
Sbjct: 178 RDTASGEGIDVAVIDRNGITMRHYRL 203
>sp|O57983|PSB1_PYRHO Proteasome subunit beta 1 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=psmB1 PE=3 SV=1
Length = 197
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 98/207 (47%), Gaps = 16/207 (7%)
Query: 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLL 74
G T V I D + AADT+ S + + + + KII + D+ + ++G DV+ + ++L
Sbjct: 6 GTTTVGIKVKDGVILAADTQASLDHMVETLNIRKIIPITDRIAITTAGSVGDVQMIARIL 65
Query: 75 AARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVG 134
A Y + M+ AM LLSN L ++FPY ++GG +E + D G
Sbjct: 66 EAEARYYYFAWGRPMTTKAMANLLSNILNENKWFPYLVQIIIGGYVDE--PTIANLDPYG 123
Query: 135 SYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATE 194
Y++ GSG+ + L+ K L EA +L +A
Sbjct: 124 GLIFDNYTATGSGTPFAIAILEEGYKE-------------NLGIEEAKELAIKAIKAAGS 170
Query: 195 RDIYT-ANKLEIVVLNKDGIHREYMEL 220
RD+YT + K+++V + K+G+ E+++L
Sbjct: 171 RDVYTGSKKVQVVTITKEGMQEEFIKL 197
>sp|D2RGT4|PSB_ARCPA Proteasome subunit beta OS=Archaeoglobus profundus (strain DSM 5631
/ JCM 9629 / NBRC 100127 / Av18) GN=psmB PE=3 SV=1
Length = 215
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 103/212 (48%), Gaps = 21/212 (9%)
Query: 14 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKL 73
G T V + D V A + R + G I SR KI ++AD+ M ++G D + L +L
Sbjct: 11 KGTTTVGLVCKDGVVLATEKRATMGNFIASRRAKKIYRIADRVAMTTAGAVGDAQFLARL 70
Query: 74 LAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV 133
++ +Y+ + ++ + A+ LLSN L R+FPY+ ++GG+D G +Y+ D +
Sbjct: 71 ISVEIKLYEIRKEEKPTVKAIATLLSNILNSVRWFPYFVQLLVGGVDKRGP-SIYSIDLL 129
Query: 134 -GSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP-LSEAEAVDLVKTCFAS 191
G+ E + + GSGS L +D TP ++ + V+L S
Sbjct: 130 GGAIEEIDIVATGSGSPTAYGVL--------------EDRYTPEITVDDGVELAVRAIYS 175
Query: 192 ATERDIYTANKLEIVVLNKDGIHREYMELRKD 223
A RD + + +++V + KDG Y EL K+
Sbjct: 176 AMRRDSASGDGIDVVKITKDG----YFELSKE 203
>sp|Q9N9W8|PSB3_GIAIN Proteasome subunit beta type-3 OS=Giardia intestinalis GN=PRSBETA3
PE=2 SV=1
Length = 207
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 96/204 (47%), Gaps = 15/204 (7%)
Query: 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILS-RDYSKIIKLADKCVMASSGFQADVKA 69
++ NG + I G D AAD R+ Y L+ + +I +L+ C++ +G Q DV
Sbjct: 5 WEYNGSALIGIKGXDCVALAADKRLGCSYQTLTIGNEERIFRLSQSCLLGLAGLQTDVLT 64
Query: 70 LQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYT 129
+ + + +Y Q ++++ A +++S+ LY RF PY+ ++ G + +GK +
Sbjct: 65 TYRQIRMKSNLYHLQEDREIRPRATAKMISSFLYKHRFGPYFISPIIAGFEADGKPYLGA 124
Query: 130 YDAVGSYER-VGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTC 188
D +G + + G+ S ++ + +K +SE E + L++
Sbjct: 125 MDTIGCLDDCTNFQIAGTASDFLLGLCETHVKP-------------DMSEDEILPLMEQI 171
Query: 189 FASATERDIYTANKLEIVVLNKDG 212
SAT RD Y+ +VVL +DG
Sbjct: 172 IRSATNRDAYSGWGAHVVVLRRDG 195
>sp|Q8PZ04|PSB_METMA Proteasome subunit beta OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=psmB PE=3 SV=1
Length = 210
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 99/202 (49%), Gaps = 15/202 (7%)
Query: 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLL 74
G T V + D V A++ R + G+ I S+ K+ ++ D M ++G D + L +L+
Sbjct: 9 GTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLV 68
Query: 75 AARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV- 133
+ +Y+ + N+ M+ + L+SN L R++P ++GG+D G +Y+ D +
Sbjct: 69 SVESQLYKMRRNESMTIKGIATLMSNFLNANRYYPMMVQLLIGGVDKNGP-AIYSLDPMG 127
Query: 134 GSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT 193
GS E S+ GSGS + L++Q + ++ E +DL +AT
Sbjct: 128 GSIEETRISATGSGSPMAYGVLEDQYRE-------------DIAVKEGLDLAIRAIHNAT 174
Query: 194 ERDIYTANKLEIVVLNKDGIHR 215
+RD + +++VV+ K+ R
Sbjct: 175 KRDSASGENIDVVVITKEAFKR 196
>sp|B8D673|PSB1_DESK1 Proteasome subunit beta 1 OS=Desulfurococcus kamchatkensis (strain
1221n / DSM 18924) GN=psmB1 PE=3 SV=1
Length = 202
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 101/199 (50%), Gaps = 18/199 (9%)
Query: 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLA 75
GT + + ++ V A++ R++ +LSR+ KI + + + +G DV L K+L
Sbjct: 8 GTAIGLKTSEGVVLASEKRLTYDGFVLSRNARKIHMITNHIGVGFAGLMGDVNFLVKVLR 67
Query: 76 ARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGS 135
Y+ QH +++ ++ +LLS LY + P + V+GG D EG +Y D VGS
Sbjct: 68 LEAKNYELQHGREIKTRSLAKLLSVILYSYKLAPMLTEVVVGGYDEEGP-SLYILDPVGS 126
Query: 136 YERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAE--AVDLVKTCFASAT 193
Y + GSG+ L + +++ P + L EAE AV+ VKT
Sbjct: 127 VIEEKYVAVGSGAQLALGYIE-----------PRYNPGLGLKEAEELAVNAVKTVI---- 171
Query: 194 ERDIYTANKLEIVVLNKDG 212
ERD+ + + +++VV++K+G
Sbjct: 172 ERDVLSGDGIDLVVIDKNG 190
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,612,869
Number of Sequences: 539616
Number of extensions: 3093622
Number of successful extensions: 7745
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 7351
Number of HSP's gapped (non-prelim): 269
length of query: 223
length of database: 191,569,459
effective HSP length: 113
effective length of query: 110
effective length of database: 130,592,851
effective search space: 14365213610
effective search space used: 14365213610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)