Query 027437
Match_columns 223
No_of_seqs 134 out of 1085
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 09:55:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027437.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027437hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03757 proteasome_beta_type_1 100.0 2.9E-52 6.3E-57 342.9 27.3 212 8-223 1-212 (212)
2 cd03759 proteasome_beta_type_3 100.0 8.6E-48 1.9E-52 312.6 26.4 192 14-218 2-194 (195)
3 KOG0179 20S proteasome, regula 100.0 6.6E-48 1.4E-52 303.6 22.7 221 1-223 15-235 (235)
4 cd03758 proteasome_beta_type_2 100.0 2.5E-46 5.4E-51 303.5 25.8 190 15-217 1-192 (193)
5 cd03760 proteasome_beta_type_4 100.0 3.4E-46 7.3E-51 303.7 25.4 192 14-216 1-195 (197)
6 cd03761 proteasome_beta_type_5 100.0 5.8E-46 1.3E-50 300.2 25.9 187 16-216 1-187 (188)
7 COG0638 PRE1 20S proteasome, a 100.0 2.5E-46 5.4E-51 311.8 23.9 193 10-216 25-220 (236)
8 TIGR03634 arc_protsome_B prote 100.0 2.2E-45 4.8E-50 296.0 25.4 185 15-213 1-185 (185)
9 cd03764 proteasome_beta_archea 100.0 7.4E-45 1.6E-49 293.7 25.7 187 16-216 1-187 (188)
10 cd03762 proteasome_beta_type_6 100.0 2.5E-44 5.4E-49 290.6 26.0 187 16-216 1-187 (188)
11 cd01912 proteasome_beta protea 100.0 9.2E-44 2E-48 287.2 26.2 188 16-216 1-188 (189)
12 PTZ00488 Proteasome subunit be 100.0 1.1E-43 2.4E-48 297.5 25.8 192 10-216 35-226 (247)
13 cd03763 proteasome_beta_type_7 100.0 1.5E-43 3.3E-48 286.3 25.6 187 16-217 1-187 (189)
14 TIGR03690 20S_bact_beta protea 100.0 8.3E-43 1.8E-47 288.0 25.4 189 14-215 1-201 (219)
15 cd03765 proteasome_beta_bacter 100.0 1.8E-42 3.8E-47 287.6 25.4 185 16-215 1-204 (236)
16 cd03750 proteasome_alpha_type_ 100.0 1.3E-42 2.7E-47 288.5 23.3 189 11-215 23-216 (227)
17 cd03752 proteasome_alpha_type_ 100.0 1.7E-42 3.7E-47 285.1 22.8 185 11-208 25-213 (213)
18 PTZ00246 proteasome subunit al 100.0 2.7E-42 5.9E-47 290.7 23.4 189 11-212 27-219 (253)
19 TIGR03633 arc_protsome_A prote 100.0 5.4E-42 1.2E-46 284.2 23.6 194 11-220 25-222 (224)
20 PF00227 Proteasome: Proteasom 100.0 7.6E-42 1.6E-46 275.8 22.8 184 12-208 1-190 (190)
21 cd03755 proteasome_alpha_type_ 100.0 5.4E-42 1.2E-46 281.0 22.3 181 11-208 23-207 (207)
22 cd03749 proteasome_alpha_type_ 100.0 8.2E-42 1.8E-46 280.6 23.1 184 11-209 23-211 (211)
23 cd03754 proteasome_alpha_type_ 100.0 6.3E-42 1.4E-46 282.1 21.5 186 10-208 24-215 (215)
24 PRK03996 proteasome subunit al 100.0 1.8E-41 3.9E-46 283.9 23.1 193 11-219 32-228 (241)
25 cd03751 proteasome_alpha_type_ 100.0 1.8E-41 3.8E-46 278.7 22.0 183 11-208 26-212 (212)
26 cd01906 proteasome_protease_Hs 100.0 7.7E-41 1.7E-45 268.2 23.8 180 16-208 1-182 (182)
27 cd01911 proteasome_alpha prote 100.0 4.5E-41 9.8E-46 275.9 21.8 183 11-208 23-209 (209)
28 cd03756 proteasome_alpha_arche 100.0 8.6E-41 1.9E-45 274.6 22.6 183 11-209 24-210 (211)
29 KOG0176 20S proteasome, regula 100.0 2.5E-41 5.5E-46 264.3 17.7 188 11-214 30-226 (241)
30 cd03753 proteasome_alpha_type_ 100.0 3.4E-40 7.4E-45 271.4 22.4 182 11-208 23-213 (213)
31 TIGR03691 20S_bact_alpha prote 100.0 1E-38 2.2E-43 264.6 22.7 181 11-212 23-211 (228)
32 KOG0174 20S proteasome, regula 100.0 2.1E-38 4.5E-43 247.2 16.9 195 12-220 16-210 (224)
33 KOG0180 20S proteasome, regula 100.0 8.6E-38 1.9E-42 239.6 18.2 203 8-223 1-204 (204)
34 KOG0178 20S proteasome, regula 100.0 1.2E-37 2.5E-42 245.9 17.1 193 11-215 27-223 (249)
35 KOG0175 20S proteasome, regula 100.0 2.3E-37 4.9E-42 250.6 17.3 190 13-216 69-258 (285)
36 KOG0173 20S proteasome, regula 100.0 1.1E-36 2.3E-41 246.2 18.1 197 6-217 28-224 (271)
37 KOG0183 20S proteasome, regula 100.0 1E-36 2.2E-41 241.2 14.7 191 10-215 25-220 (249)
38 KOG0177 20S proteasome, regula 100.0 5.4E-36 1.2E-40 233.0 18.3 189 15-216 1-191 (200)
39 KOG0185 20S proteasome, regula 100.0 2.4E-36 5.2E-41 241.9 16.3 203 3-216 30-235 (256)
40 KOG0184 20S proteasome, regula 100.0 3.5E-35 7.6E-40 233.5 16.4 186 10-210 29-218 (254)
41 KOG0181 20S proteasome, regula 100.0 1.9E-35 4.1E-40 230.9 14.5 190 11-216 28-221 (233)
42 KOG0863 20S proteasome, regula 100.0 6.4E-35 1.4E-39 233.1 16.3 188 11-213 28-220 (264)
43 PRK05456 ATP-dependent proteas 100.0 1E-32 2.2E-37 219.0 20.1 167 15-207 1-171 (172)
44 cd01913 protease_HslV Protease 100.0 2E-32 4.3E-37 216.0 19.7 166 16-207 1-170 (171)
45 TIGR03692 ATP_dep_HslV ATP-dep 100.0 3.2E-32 6.8E-37 214.9 19.3 166 16-207 1-170 (171)
46 KOG0182 20S proteasome, regula 100.0 5.1E-31 1.1E-35 208.4 18.7 200 8-220 29-232 (246)
47 cd01901 Ntn_hydrolase The Ntn 100.0 1.4E-28 2.9E-33 191.8 21.6 161 16-190 1-163 (164)
48 COG5405 HslV ATP-dependent pro 99.8 1.1E-17 2.4E-22 127.8 12.1 171 14-209 3-176 (178)
49 COG3484 Predicted proteasome-t 99.6 1.3E-14 2.7E-19 115.0 13.3 185 15-214 1-204 (255)
50 PF09894 DUF2121: Uncharacteri 97.0 0.078 1.7E-06 42.5 14.9 156 15-211 1-180 (194)
51 COG4079 Uncharacterized protei 95.6 1 2.2E-05 37.6 14.3 157 15-211 1-181 (293)
52 KOG3361 Iron binding protein i 85.9 1.1 2.3E-05 34.0 3.4 43 129-184 72-114 (157)
53 PRK09732 hypothetical protein; 76.7 12 0.00025 28.5 6.4 39 174-216 5-43 (134)
54 COG3193 GlcG Uncharacterized p 73.3 16 0.00036 28.0 6.3 36 174-213 6-41 (141)
55 PF03928 DUF336: Domain of unk 62.9 15 0.00032 27.5 4.4 38 175-216 2-39 (132)
56 PF13983 YsaB: YsaB-like lipop 55.1 39 0.00085 22.6 4.6 57 82-138 9-73 (77)
57 COG4245 TerY Uncharacterized p 41.8 51 0.0011 26.7 4.3 41 180-220 22-62 (207)
58 PRK02487 hypothetical protein; 37.4 1.4E+02 0.0031 23.2 6.3 36 173-213 20-55 (163)
59 TIGR02261 benz_CoA_red_D benzo 30.9 83 0.0018 26.8 4.3 29 116-148 104-135 (262)
60 PF11211 DUF2997: Protein of u 29.9 74 0.0016 19.6 2.8 32 128-159 3-34 (48)
61 PRK10465 hydrogenase 2-specifi 27.3 53 0.0011 25.8 2.3 75 107-195 57-137 (159)
62 TIGR03192 benz_CoA_bzdQ benzoy 26.7 1.3E+02 0.0028 26.1 4.7 30 115-148 131-163 (293)
63 PRK13599 putative peroxiredoxi 25.8 1.9E+02 0.0041 23.6 5.5 61 124-184 119-193 (215)
64 COG1754 Uncharacterized C-term 24.3 83 0.0018 27.1 3.1 72 117-205 78-151 (298)
65 PF08269 Cache_2: Cache domain 23.3 1.2E+02 0.0027 20.8 3.4 36 175-215 34-69 (95)
66 TIGR02259 benz_CoA_red_A benzo 22.2 1.5E+02 0.0032 27.1 4.4 29 116-148 274-305 (432)
67 PF12120 Arr-ms: Rifampin ADP- 21.1 61 0.0013 23.1 1.4 19 122-140 52-70 (100)
No 1
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.9e-52 Score=342.91 Aligned_cols=212 Identities=61% Similarity=0.943 Sum_probs=199.8
Q ss_pred cCccCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCC
Q 027437 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNK 87 (223)
Q Consensus 8 ~~~~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 87 (223)
|+||+++|+|+|||+++||||||+|++.+.|.++..++.+||++|++++++++||..+|++.+.++++.+++.|++.+++
T Consensus 1 ~~~~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~ 80 (212)
T cd03757 1 FSPYTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNK 80 (212)
T ss_pred CCCccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCC
Confidence 89999999999999999999999999999998888889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCC
Q 027437 88 QMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 88 ~~~~~~la~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~ 167 (223)
+++++.+++.+++++|.+|.+||++++|+||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+++.|..
T Consensus 81 ~i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~- 159 (212)
T cd03757 81 EMSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNN- 159 (212)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCc-
Confidence 9999999999999999988889999999999998778999999999999999999999999999999999985321100
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEEeeecCCC
Q 027437 168 PAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREYMELRKD 223 (223)
Q Consensus 168 ~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~~~~ 223 (223)
.|.++||++||++++.+||+.+.+||..++++++|++|+++|++++.+++|||
T Consensus 160 ---~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~~~~~~~~~ 212 (212)
T cd03757 160 ---VERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEETFPLRKD 212 (212)
T ss_pred ---CCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEEEeeccCCC
Confidence 13489999999999999999999999999999999999999999999999998
No 2
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.6e-48 Score=312.59 Aligned_cols=192 Identities=26% Similarity=0.464 Sum_probs=183.9
Q ss_pred CCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 027437 14 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPA 93 (223)
Q Consensus 14 ~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 93 (223)
+|+|+|||+++||||||+|++.+.+..+..++.+|||+|++|+++++||+.+|++.+.+++|.+++.|++.++++++++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 69999999999999999999999987777778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeC-eEEEcCChhhHHHHHhcccCCCCCCCCCCCCC
Q 027437 94 MGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA 172 (223)
Q Consensus 94 la~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~-~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~~ 172 (223)
++++|++++|++|.+||+|++||||||++++|+||.+||+|++.++. ++|+|+|++.++++||+.|+
T Consensus 82 la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~------------ 149 (195)
T cd03759 82 FSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWR------------ 149 (195)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccC------------
Confidence 99999999999888999999999999988889999999999998888 99999999999999999965
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEEee
Q 027437 173 VTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREYM 218 (223)
Q Consensus 173 ~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~~~ 218 (223)
|+||.+||++++++||+.+.+||..++++++|++|+++|++++.+
T Consensus 150 -~~~s~~ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~~ 194 (195)
T cd03759 150 -PDMEPDELFETISQALLSAVDRDALSGWGAVVYIITKDKVTTRTL 194 (195)
T ss_pred -CCCCHHHHHHHHHHHHHHHHhhCcccCCceEEEEEcCCcEEEEec
Confidence 699999999999999999999999999999999999999988775
No 3
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-48 Score=303.63 Aligned_cols=221 Identities=57% Similarity=0.881 Sum_probs=212.5
Q ss_pred CCCCCCCcCccCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHH
Q 027437 1 MTKQHPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLI 80 (223)
Q Consensus 1 ~~~~~~~~~~~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~ 80 (223)
++++++.|+||..+|+|+|||++.|+.|+|+|+|.++|..+.++..+|||+++|+++++.||..+|+..|...++..++.
T Consensus 15 ~~~~~~~f~PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~ 94 (235)
T KOG0179|consen 15 KTMDHERFSPYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQ 94 (235)
T ss_pred CccccccCCccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccC
Q 027437 81 YQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLK 160 (223)
Q Consensus 81 ~~~~~~~~~~~~~la~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~ 160 (223)
|+..+++.|++..+|+.|+.++|.+|+.||.+..+|||+|++|+|.+|.+||.|++++..+.|-|+++..++++|+....
T Consensus 95 Y~~~h~k~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~ 174 (235)
T KOG0179|consen 95 YEHDHNKKMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIG 174 (235)
T ss_pred HhhcccccccHHHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEEeeecCCC
Q 027437 161 SPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREYMELRKD 223 (223)
Q Consensus 161 ~~~~~~~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~~~~ 223 (223)
.+++..+.+ -++.||+|+|+.++..+|..|.+||..+|++++|++++++|+..+.+|+|+|
T Consensus 175 ~kn~~~e~~--~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~e~~~LrkD 235 (235)
T KOG0179|consen 175 HKNQNLENA--ERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEVETLPLRKD 235 (235)
T ss_pred CcCcccccC--cccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEEEeeeccCC
Confidence 877665443 3467999999999999999999999999999999999999999999999998
No 4
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.5e-46 Score=303.55 Aligned_cols=190 Identities=27% Similarity=0.405 Sum_probs=180.1
Q ss_pred CCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027437 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (223)
Q Consensus 15 gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
++|+|||+++||||||+|+|.+.|.++..++.+|||+|++++++++||+.+|++.|.++++.+++.|++.++++++++.+
T Consensus 1 ~~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~l 80 (193)
T cd03758 1 METLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAA 80 (193)
T ss_pred CceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 48999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-c-CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCCCCCC
Q 027437 95 GQLLSNTLYYK-R-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA 172 (223)
Q Consensus 95 a~~l~~~~~~~-r-~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~~ 172 (223)
++.+++++|.+ | .|||++++|+||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 81 a~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~------------ 148 (193)
T cd03758 81 ANFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYK------------ 148 (193)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccC------------
Confidence 99999998643 3 479999999999997677999999999999999999999999999999999975
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEEe
Q 027437 173 VTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREY 217 (223)
Q Consensus 173 ~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~~ 217 (223)
++||++||++++.+||+.+.+||..++++++|++|+++|++..+
T Consensus 149 -~~ms~eeai~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~~ 192 (193)
T cd03758 149 -PDMTVEEALELMKKCIKELKKRFIINLPNFTVKVVDKDGIRDLE 192 (193)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCCeEeCC
Confidence 69999999999999999999999999999999999999998655
No 5
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.4e-46 Score=303.67 Aligned_cols=192 Identities=29% Similarity=0.396 Sum_probs=180.1
Q ss_pred CCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHH-HHHHhcCCCCCHH
Q 027437 14 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHL-IYQHQHNKQMSCP 92 (223)
Q Consensus 14 ~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~ 92 (223)
.|+|+|||+++||||||+|+|.+.+.++..+..+|||+|+++++++++|+.+|++.+.+++|.+++ .+++.++++++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 489999999999999999999998888888999999999999999999999999999999999986 5777899999999
Q ss_pred HHHHHHHHHHHhhc--CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCCCC
Q 027437 93 AMGQLLSNTLYYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQ 170 (223)
Q Consensus 93 ~la~~l~~~~~~~r--~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~ 170 (223)
.+++++++++|+++ +|||+|++|+||||++++|+||.+||+|++.+++++|+|+|+.+++++||+.|++
T Consensus 81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--------- 151 (197)
T cd03760 81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEK--------- 151 (197)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCC---------
Confidence 99999999999876 8999999999999976779999999999999999999999999999999999751
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEE
Q 027437 171 DAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHRE 216 (223)
Q Consensus 171 ~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~ 216 (223)
.++||++||++++.+||+.+.+||..++++++|++|+++|+++.
T Consensus 152 --~~~ms~eea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~ 195 (197)
T cd03760 152 --KPDLTEEEARALIEECMKVLYYRDARSINKYQIAVVTKEGVEIE 195 (197)
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEECCCCEEeC
Confidence 12999999999999999999999999999999999999998754
No 6
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.8e-46 Score=300.22 Aligned_cols=187 Identities=26% Similarity=0.332 Sum_probs=179.5
Q ss_pred CeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027437 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
+|+|||+++||||||+|+|.+.|.++..++.+|||+|++|+++++||+.+|++.|.+++|.+++.|++.++++++++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027437 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+.+++++|.+|..||++++|+||||+ .+|+||.+||+|++.+++++|+|+|+++++++||+.|+ ++
T Consensus 81 ~~ls~~l~~~~~~~~~v~~li~G~D~-~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~-------------~~ 146 (188)
T cd03761 81 KLLSNMLYQYKGMGLSMGTMICGWDK-TGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYR-------------YD 146 (188)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEeC-CCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCC-------------CC
Confidence 99999999999889999999999995 45999999999999999999999999999999999965 79
Q ss_pred CCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEE
Q 027437 176 LSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHRE 216 (223)
Q Consensus 176 ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~ 216 (223)
||.+||++++.+||+.+.+||..++++++|++|+++|++..
T Consensus 147 ~s~eea~~l~~~~l~~~~~rd~~sg~~~~v~ii~~~g~~~~ 187 (188)
T cd03761 147 LSVEEAYDLARRAIYHATHRDAYSGGNVNLYHVREDGWRKI 187 (188)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEcCCceEEc
Confidence 99999999999999999999999999999999999999653
No 7
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-46 Score=311.83 Aligned_cols=193 Identities=32% Similarity=0.472 Sum_probs=182.4
Q ss_pred ccCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCC
Q 027437 10 PYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQM 89 (223)
Q Consensus 10 ~~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 89 (223)
+....|+|+|||+++||||||+|+|.+.|.++..++.+|||+|+|||+|++||+.+|++.|+++++.+++.|++.+++++
T Consensus 25 a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~i 104 (236)
T COG0638 25 AVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPI 104 (236)
T ss_pred HHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34455799999999999999999999999888888899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcC--CCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCC
Q 027437 90 SCPAMGQLLSNTLYYKRF--FPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 90 ~~~~la~~l~~~~~~~r~--~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~ 167 (223)
+++.+++.+++++|.++. |||+|++|+||+|+ ++|+||.+||+|++.+++++|+|+|++.++++||+.|+
T Consensus 105 ~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~~y~------- 176 (236)
T COG0638 105 SVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDD-GGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEYR------- 176 (236)
T ss_pred CHHHHHHHHHHHHHHhccCcccceEEEEEEEEcC-CCCeEEEECCCCceeecCEEEEcCCcHHHHHHHHhhcc-------
Confidence 999999999999999886 99999999999998 77999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcC-CCeEEE
Q 027437 168 PAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNK-DGIHRE 216 (223)
Q Consensus 168 ~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~-~g~~~~ 216 (223)
++|++|||++++++||..+.+||..++++++|++|++ +|.+..
T Consensus 177 ------~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~ 220 (236)
T COG0638 177 ------EDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKL 220 (236)
T ss_pred ------CCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEc
Confidence 6999999999999999999999998999999999999 565543
No 8
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=2.2e-45 Score=295.96 Aligned_cols=185 Identities=34% Similarity=0.542 Sum_probs=178.6
Q ss_pred CCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027437 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (223)
Q Consensus 15 gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
|+|+|||+++||||||+|+|.+.|.++..++.+|||+|++++++++||..+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 79999999999999999999998889998999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCCCCCCCC
Q 027437 95 GQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVT 174 (223)
Q Consensus 95 a~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~~~~ 174 (223)
++++++++|.+++|||+|++|+||||+++ |+||.+||+|++.+++++++|+|+++++++||+.|+ +
T Consensus 81 a~~l~~~~~~~~~rP~~v~~ivaG~d~~g-~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~-------------~ 146 (185)
T TIGR03634 81 ATLLSNILNSNRFFPFIVQLLVGGVDEEG-PHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYR-------------E 146 (185)
T ss_pred HHHHHHHHHhcCCCCeEEEEEEEEEeCCC-CEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCC-------------C
Confidence 99999999998899999999999999655 999999999999999999999999999999999865 6
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCe
Q 027437 175 PLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGI 213 (223)
Q Consensus 175 ~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~ 213 (223)
+||++||++++++||+.+.++|..++++++|++|+++|+
T Consensus 147 ~~s~~ea~~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g~ 185 (185)
T TIGR03634 147 DMSVEEAKKLAVRAIKSAIERDVASGNGIDVAVITKDGV 185 (185)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEcCCCC
Confidence 999999999999999999999999999999999999985
No 9
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.4e-45 Score=293.66 Aligned_cols=187 Identities=33% Similarity=0.499 Sum_probs=179.6
Q ss_pred CeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027437 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
+|+|||+++||||||+|+|.+.|.++..++.+||++|+++++++++|+.+|++.|.+.++.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027437 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+++++.+|.+++|||+|++|+||+|+ ++|+||.+||+|++.+++++|+|+|+++++++||+.|+ ++
T Consensus 81 ~~i~~~~~~~~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~-------------~~ 146 (188)
T cd03764 81 TLLSNILNSSKYFPYIVQLLIGGVDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYK-------------ED 146 (188)
T ss_pred HHHHHHHHhcCCCCcEEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCC-------------CC
Confidence 99999999988999999999999996 56999999999999999999999999999999999865 69
Q ss_pred CCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEE
Q 027437 176 LSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHRE 216 (223)
Q Consensus 176 ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~ 216 (223)
|+++||++++++||+.+.+||..++++++|++|+++|++..
T Consensus 147 ~~~~ea~~l~~~~l~~~~~rd~~~~~~i~i~iv~~~g~~~~ 187 (188)
T cd03764 147 MTVEEAKKLAIRAIKSAIERDSASGDGIDVVVITKDGYKEL 187 (188)
T ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEECCCCeEeC
Confidence 99999999999999999999999999999999999997654
No 10
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.5e-44 Score=290.61 Aligned_cols=187 Identities=25% Similarity=0.330 Sum_probs=178.6
Q ss_pred CeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027437 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
+|+|||+++||||||+|+|.+.|.++..++.+||++|++++++++||+.+|++.|.++++.+++.|++.++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 68999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027437 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+.+++++|.+| +||++++||||+|++.+|+||.+||+|++.+++++++|+|+++++++||+.|+ ++
T Consensus 81 ~~l~~~~~~~~-~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~-------------~~ 146 (188)
T cd03762 81 SLFKNLCYNYK-EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYK-------------PG 146 (188)
T ss_pred HHHHHHHHhcc-ccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCC-------------CC
Confidence 99999998876 78999999999997666999999999999999999999999999999999865 69
Q ss_pred CCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEE
Q 027437 176 LSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHRE 216 (223)
Q Consensus 176 ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~ 216 (223)
||++||++++++||+.+.+||..++++++|++|+++|++.+
T Consensus 147 ~s~~ea~~l~~~al~~~~~rd~~~~~~~~i~~i~~~g~~~~ 187 (188)
T cd03762 147 MTLEECIKFVKNALSLAMSRDGSSGGVIRLVIITKDGVERK 187 (188)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccCCCEEEEEECCCCEEEe
Confidence 99999999999999999999999999999999999999754
No 11
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.2e-44 Score=287.23 Aligned_cols=188 Identities=37% Similarity=0.583 Sum_probs=180.4
Q ss_pred CeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027437 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|++.++|..+..+..+|||+|++++++++||+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999887789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027437 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+++++++|.++.+||++++|+||+|++++|+||.+||+|++.+++++++|+++++++++||+.|+ |+
T Consensus 81 ~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~-------------~~ 147 (189)
T cd01912 81 NLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYK-------------PD 147 (189)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccC-------------CC
Confidence 99999999888789999999999998677999999999999999999999999999999999965 69
Q ss_pred CCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEE
Q 027437 176 LSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHRE 216 (223)
Q Consensus 176 ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~ 216 (223)
||++||++++.+||+.+.++|..++++++|++|+++|++.+
T Consensus 148 ~s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi~~~g~~~~ 188 (189)
T cd01912 148 MTLEEAVELVKKAIDSAIERDLSSGGGVDVAVITKDGVEEL 188 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCccCCcEEEEEECCCCEEEc
Confidence 99999999999999999999999999999999999998753
No 12
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=1.1e-43 Score=297.47 Aligned_cols=192 Identities=24% Similarity=0.321 Sum_probs=181.3
Q ss_pred ccCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCC
Q 027437 10 PYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQM 89 (223)
Q Consensus 10 ~~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 89 (223)
|+. +|+|+|||+++||||||+|+|.+.|.++..++.+||++|++++++++||+.+|++.|.+++|.+++.|++.+++++
T Consensus 35 ~~~-~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~i 113 (247)
T PTZ00488 35 EFA-HGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELI 113 (247)
T ss_pred ccC-CCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 555 5999999999999999999999988899899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCCC
Q 027437 90 SCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPA 169 (223)
Q Consensus 90 ~~~~la~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~ 169 (223)
+++.+++.|++++|.+|..|+.+++|+||||+++ |+||++||+|++.+++++++|+|+..++++||+.|+
T Consensus 114 sv~~la~~ls~~l~~~R~~~~~v~~iiaG~D~~g-p~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k--------- 183 (247)
T PTZ00488 114 SVAAASKILANIVWNYKGMGLSMGTMICGWDKKG-PGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFK--------- 183 (247)
T ss_pred CHHHHHHHHHHHHHhcCCCCeeEEEEEEEEeCCC-CEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCc---------
Confidence 9999999999999998866777779999999655 999999999999999999999999999999999976
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEE
Q 027437 170 QDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHRE 216 (223)
Q Consensus 170 ~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~ 216 (223)
++||.+||++++++||+.+.+||..++++++|++|+++|++..
T Consensus 184 ----~dms~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~l 226 (247)
T PTZ00488 184 ----WDLNDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKKI 226 (247)
T ss_pred ----CCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCccEEC
Confidence 6999999999999999999999999999999999999996543
No 13
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-43 Score=286.28 Aligned_cols=187 Identities=24% Similarity=0.332 Sum_probs=177.6
Q ss_pred CeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027437 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.++|.++..++.+|||+|++++++++||+.+|++.+.+.++.+++.|++.++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027437 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+.+++.+|.++ .||+|++|+||||+++ |+||.+||+|++.+++++|+|+|+..++++||+.|+ |+
T Consensus 81 ~~l~~~l~~~~-~p~~v~~ivaG~d~~g-~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~-------------~~ 145 (189)
T cd03763 81 TMLKQHLFRYQ-GHIGAALVLGGVDYTG-PHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYK-------------PD 145 (189)
T ss_pred HHHHHHHHHcC-CccceeEEEEeEcCCC-CEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcC-------------CC
Confidence 99999998765 5999999999999655 999999999999999999999999999999999965 79
Q ss_pred CCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEEe
Q 027437 176 LSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREY 217 (223)
Q Consensus 176 ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~~ 217 (223)
||++||++++.+||+.+.+||..++++++|++|+++|++..+
T Consensus 146 ls~~ea~~l~~~~l~~~~~rd~~~~~~~~v~ii~~~g~~~~~ 187 (189)
T cd03763 146 MTEEEAKKLVCEAIEAGIFNDLGSGSNVDLCVITKDGVEYLR 187 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCcEEEec
Confidence 999999999999999999999999999999999999998643
No 14
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=8.3e-43 Score=288.03 Aligned_cols=189 Identities=24% Similarity=0.351 Sum_probs=175.8
Q ss_pred CCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 027437 14 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPA 93 (223)
Q Consensus 14 ~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 93 (223)
+|+|+|||+++||||||+|+|.++|.++..++.+|||+|++|+++++||+.+|++.|.+++|.+++.|++.++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 48999999999999999999999988998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh---cCCCeeEEEEEEEEcCC-CceEEEEEcCCC-ceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCC
Q 027437 94 MGQLLSNTLYYK---RFFPYYSFNVLGGLDNE-GKGCVYTYDAVG-SYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLP 168 (223)
Q Consensus 94 la~~l~~~~~~~---r~~P~~v~~llaG~d~~-~~~~Ly~id~~G-~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~ 168 (223)
+++.|++++|.. .+|||++++||||||++ ++|+||.+||+| ++..++++|+|+|++.++++||+.|+
T Consensus 81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~-------- 152 (219)
T TIGR03690 81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYS-------- 152 (219)
T ss_pred HHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCC--------
Confidence 999999999764 27999999999999964 679999999999 57788999999999999999999865
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCc-------EEEEEEcCCCeEE
Q 027437 169 AQDAVTPLSEAEAVDLVKTCFASATERDIYTANK-------LEIVVLNKDGIHR 215 (223)
Q Consensus 169 ~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~-------i~i~~i~~~g~~~ 215 (223)
++||.+||++++.+||..+.++|..+++. ++|++|+++|++.
T Consensus 153 -----~~ms~eeai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~~ 201 (219)
T TIGR03690 153 -----PDLDEDDALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADGARR 201 (219)
T ss_pred -----CCcCHHHHHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCceEE
Confidence 69999999999999999999999877664 3999999999765
No 15
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.8e-42 Score=287.63 Aligned_cols=185 Identities=17% Similarity=0.210 Sum_probs=169.4
Q ss_pred CeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEcc----CceEEEecCChhHHHHHHHHHHHHHHHHHHhcCC-CCC
Q 027437 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLA----DKCVMASSGFQADVKALQKLLAARHLIYQHQHNK-QMS 90 (223)
Q Consensus 16 ttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~~~ 90 (223)
|.+|||+++||||||+|+|.+.+... .++.+||++|+ +||+|+.||+.+|++.+.+++|.+++.|++.+++ +++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~-~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 79 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDN-ISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPT 79 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCcc-ccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCC
Confidence 57899999999999999999887443 45789999998 8999999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHhh----c------CCCeeEEEEEEEEcCCCceEEEEEcCCCceeee----CeEEEcCChhhHHHHHh
Q 027437 91 CPAMGQLLSNTLYYK----R------FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV----GYSSQGSGSTLIMPFLD 156 (223)
Q Consensus 91 ~~~la~~l~~~~~~~----r------~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~----~~~aiG~g~~~~~~~Le 156 (223)
++.+|+.++++++.. . .|||+|++|+||||++.+|+||.+||+|++.++ +|+|+|+ +.+++++||
T Consensus 80 v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Le 158 (236)
T cd03765 80 MFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILD 158 (236)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHH
Confidence 999999999986431 1 489999999999997666999999999999998 6799996 799999999
Q ss_pred cccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEE
Q 027437 157 NQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHR 215 (223)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~ 215 (223)
+.|+ ++||++||++++++||..++.+|..++++++|++|+++|++.
T Consensus 159 k~yk-------------~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~~~ 204 (236)
T cd03765 159 RVIT-------------PDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQV 204 (236)
T ss_pred HhcC-------------CCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCeee
Confidence 9976 699999999999999999999999999999999999999876
No 16
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-42 Score=288.46 Aligned_cols=189 Identities=17% Similarity=0.227 Sum_probs=174.9
Q ss_pred cCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027437 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|++.+. .++..++.+||++|++|++|++||+.+|++.+.+++|.+++.|++.++++++
T Consensus 23 av~~G~t~igik~~dgVvlaad~~~~~-~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~ 101 (227)
T cd03750 23 AVSSGAPSVGIKAANGVVLATEKKVPS-PLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEPIP 101 (227)
T ss_pred HHHcCCCEEEEEeCCEEEEEEeecCCc-cccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 456899999999999999999999984 5777788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--hhc--CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCC
Q 027437 91 CPAMGQLLSNTLY--YKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~~--~~r--~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~ 166 (223)
++.+++.|+++++ .++ .|||++++|++|||++ +|+||.+||+|++.+++++|+|+|++.++++||+.|+
T Consensus 102 v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~-g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~------ 174 (227)
T cd03750 102 VSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEG-GPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLEKRYN------ 174 (227)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCC-CCEEEEECCCCCEEeeeEEEECCCCHHHHHHHHhhcc------
Confidence 9999999999984 444 7999999999999965 5999999999999999999999999999999999976
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCC-CeEE
Q 027437 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKD-GIHR 215 (223)
Q Consensus 167 ~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~-g~~~ 215 (223)
++||++||++++++||..+.++|. ++.+++|.+|+++ |.+.
T Consensus 175 -------~~ms~eeai~l~~~~l~~~~~~~l-~~~~iev~iv~~~~~~~~ 216 (227)
T cd03750 175 -------EDLELEDAIHTAILTLKEGFEGQM-TEKNIEIGICGETKGFRL 216 (227)
T ss_pred -------CCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEECCCCEEE
Confidence 699999999999999999998875 8899999999986 5653
No 17
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-42 Score=285.13 Aligned_cols=185 Identities=21% Similarity=0.233 Sum_probs=172.9
Q ss_pred cCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027437 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|+|.+.+..+..++.+||++|++++++++||+.+|++.+.+++|.+++.|++.++++++
T Consensus 25 a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 104 (213)
T cd03752 25 AISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEPIP 104 (213)
T ss_pred HHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 46789999999999999999999999887666679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh----cCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCC
Q 027437 91 CPAMGQLLSNTLYYK----RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~~~~----r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~ 166 (223)
++.+++.|+..++.. +.|||+|++|++|||++.+|+||.+||+|++.+++++|+|+|+..++++||+.|+
T Consensus 105 v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~y~------ 178 (213)
T cd03752 105 VEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQDYK------ 178 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHhcc------
Confidence 999999999887433 3689999999999997666999999999999999999999999999999999865
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEE
Q 027437 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVL 208 (223)
Q Consensus 167 ~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i 208 (223)
|+||++||++++++||..+.++|..++.+++|++|
T Consensus 179 -------~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 179 -------DDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred -------CCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 69999999999999999999999889999999875
No 18
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=2.7e-42 Score=290.74 Aligned_cols=189 Identities=17% Similarity=0.171 Sum_probs=177.1
Q ss_pred cCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027437 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|+|.+++.++..+..+||++|++++++++||+.+|++.+.+.+|.+++.|++.++++++
T Consensus 27 av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~ 106 (253)
T PTZ00246 27 AINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEPQP 106 (253)
T ss_pred HHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 56789999999999999999999999987776667899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh----cCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCC
Q 027437 91 CPAMGQLLSNTLYYK----RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~~~~----r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~ 166 (223)
++.+++.++..++.+ +.|||+|++|+||||++++|+||.+||+|++.+++++|+|+|+..++++||+.|+
T Consensus 107 v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~~~------ 180 (253)
T PTZ00246 107 VEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQEWK------ 180 (253)
T ss_pred HHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEEEECCCcHHHHHHHHHhcc------
Confidence 999999999887443 3789999999999997667999999999999999999999999999999999865
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCC
Q 027437 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDG 212 (223)
Q Consensus 167 ~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g 212 (223)
++|+++||++++++||..+.++|..++++++|++|+++|
T Consensus 181 -------~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~ 219 (253)
T PTZ00246 181 -------EDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGE 219 (253)
T ss_pred -------CCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC
Confidence 699999999999999999999999999999999999886
No 19
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=5.4e-42 Score=284.15 Aligned_cols=194 Identities=21% Similarity=0.303 Sum_probs=178.2
Q ss_pred cCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027437 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+++|+|+|||+++||||||+|+|.+. .++..++.+||++|++++++++||+.+|++.+.+.++.++..|++.++++++
T Consensus 25 av~~G~tvigi~~~dgvvlaad~r~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 103 (224)
T TIGR03633 25 AVKRGTTAVGIKTKDGVVLAVDKRITS-KLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEPID 103 (224)
T ss_pred HHHcCCCEEEEEECCEEEEEEeccCCc-cccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 467899999999999999999999984 5677788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--hc--CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCC
Q 027437 91 CPAMGQLLSNTLYY--KR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~~~--~r--~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~ 166 (223)
++.+++.++++++. ++ .|||+|++||||+|+ ++|+||.+||+|++.+++++++|+|+..++++||+.|+
T Consensus 104 ~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~-~~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~------ 176 (224)
T TIGR03633 104 VETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKEYR------ 176 (224)
T ss_pred HHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC-CcCEEEEECCCCCeecceEEEECCCCHHHHHHHHHhcc------
Confidence 99999999999844 32 789999999999994 56999999999999999999999999999999999865
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEEeeec
Q 027437 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREYMEL 220 (223)
Q Consensus 167 ~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~ 220 (223)
++|+.+||++++++||..+.+ |..++++++|++|+++|..++.++.
T Consensus 177 -------~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~~ 222 (224)
T TIGR03633 177 -------EDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLSV 222 (224)
T ss_pred -------CCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECCC
Confidence 799999999999999999888 8889999999999999976665543
No 20
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=7.6e-42 Score=275.79 Aligned_cols=184 Identities=31% Similarity=0.480 Sum_probs=170.9
Q ss_pred CCCCCeEEEEEcCCEEEEeEecCcccCceeeecC-cCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027437 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRD-YSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 12 ~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~-~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
+++|+|+|||+++||||||+|++.+.|..+..+. .+|||+|++++++++||+.+|++.+.++++.+++.|++.++++++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 3589999999999999999999999888886666 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH----HhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeee-CeEEEcCChhhHHHHHhcccCCCCCC
Q 027437 91 CPAMGQLLSNTL----YYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPL 165 (223)
Q Consensus 91 ~~~la~~l~~~~----~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~-~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (223)
++.+++.+++.+ +..++|||++++|+||||++++|+||.+||+|++.++ +++|+|+|++.++++||+.|+
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~----- 155 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYK----- 155 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHT-----
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhcc-----
Confidence 997777666655 3345899999999999998888999999999999999 699999999999999999975
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEE
Q 027437 166 LLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVL 208 (223)
Q Consensus 166 ~~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i 208 (223)
++|+++||++++++||+.+.++|..++++++|++|
T Consensus 156 --------~~~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 156 --------PDLSLEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp --------TTSSHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred --------CCCCHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 69999999999999999999999999999999987
No 21
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.4e-42 Score=280.97 Aligned_cols=181 Identities=18% Similarity=0.297 Sum_probs=168.0
Q ss_pred cCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027437 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|++.+.. ++..+..+||++|++|+++++||+.+|++.+.+++|.+++.|++.++++++
T Consensus 23 av~~G~t~Igik~~dgVvlaad~~~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 101 (207)
T cd03755 23 AVRKGTTAVGVRGKDCVVLGVEKKSVAK-LQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPVT 101 (207)
T ss_pred HHHcCCCEEEEEeCCEEEEEEecCCCCc-ccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 4578999999999999999999997654 565667899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCC
Q 027437 91 CPAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~--~~~r--~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~ 166 (223)
++.+++.+++++ |.++ .|||++++|++|||++++|+||.+||+|++.+++++|+|+|+..++++||+.|+
T Consensus 102 ~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~------ 175 (207)
T cd03755 102 VEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLEKNYK------ 175 (207)
T ss_pred HHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEECCCCHHHHHHHHhhcc------
Confidence 999999999999 5544 789999999999998777999999999999999999999999999999999965
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEE
Q 027437 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVL 208 (223)
Q Consensus 167 ~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i 208 (223)
++|+.+||++++++||..+.+ .++.++||+++
T Consensus 176 -------~~ms~eeai~l~~~~l~~~~~---~~~~~~e~~~~ 207 (207)
T cd03755 176 -------EEMTRDDTIKLAIKALLEVVQ---SGSKNIELAVM 207 (207)
T ss_pred -------CCCCHHHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence 699999999999999999987 57789999975
No 22
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.2e-42 Score=280.64 Aligned_cols=184 Identities=17% Similarity=0.231 Sum_probs=169.4
Q ss_pred cCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027437 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|+|.+.+ +.+..+||++|++++++++||+.+|++.+.++++.+++.|+++++++++
T Consensus 23 av~~G~t~IgIk~~dgVvlaad~r~~~~---l~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~ 99 (211)
T cd03749 23 AVKQGSATVGLKSKTHAVLVALKRATSE---LSSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPIP 99 (211)
T ss_pred HHhcCCCEEEEEeCCEEEEEEeccCccc---cCCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3568999999999999999999998765 3457799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--h--cCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCC
Q 027437 91 CPAMGQLLSNTLYY--K--RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~~~--~--r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~ 166 (223)
++.+++.+++.++. + +.|||+|++|++|||++ +|+||.+||+|++.+++++|+|+|++.++++||+.|++
T Consensus 100 v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~-gp~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~~----- 173 (211)
T cd03749 100 VSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDES-GPHLFQTCPSGNYFEYKATSIGARSQSARTYLERHFEE----- 173 (211)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCC-CCeEEEECCCcCEeeeeEEEECCCcHHHHHHHHHhhcc-----
Confidence 99999999998854 3 37899999999999965 49999999999999999999999999999999999873
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhccc-cCCCcEEEEEEc
Q 027437 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDI-YTANKLEIVVLN 209 (223)
Q Consensus 167 ~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~-~~~~~i~i~~i~ 209 (223)
.++|+++|++++++++|+.++++|. .++.+|||++|+
T Consensus 174 ------~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 174 ------FEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred ------ccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 2699999999999999999999887 899999999984
No 23
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.3e-42 Score=282.06 Aligned_cols=186 Identities=20% Similarity=0.310 Sum_probs=169.0
Q ss_pred ccCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCC
Q 027437 10 PYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQM 89 (223)
Q Consensus 10 ~~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 89 (223)
.+.++|+|+|||+++||||||+|+|.+.+ ++..+..+||++|+++++|++||+.+|++.+.+++|.++..|++.+++++
T Consensus 24 a~~~~g~t~igi~~~d~Vvlaad~r~~~~-~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i 102 (215)
T cd03754 24 AVKNAGLTSVAVRGKDCAVVVTQKKVPDK-LIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYEM 102 (215)
T ss_pred HHhcCCccEEEEEeCCEEEEEEecccccc-ccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCCCC
Confidence 34456899999999999999999999875 45556889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCC
Q 027437 90 SCPAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (223)
Q Consensus 90 ~~~~la~~l~~~~--~~~r--~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (223)
+++.+|+.+++++ |+++ .|||++++|+||||++++|+||.+||+|++.+++++|+|+|++.++++||+.|++
T Consensus 103 ~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~---- 178 (215)
T cd03754 103 PVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQEATNFLEKKLKK---- 178 (215)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEECCCcHHHHHHHHHHhcc----
Confidence 9999999999974 5544 6899999999999987779999999999999999999999999999999999873
Q ss_pred CCCCCCCCCCC--CHHHHHHHHHHHHHHHHhccccCCCcEEEEEE
Q 027437 166 LLPAQDAVTPL--SEAEAVDLVKTCFASATERDIYTANKLEIVVL 208 (223)
Q Consensus 166 ~~~~~~~~~~l--s~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i 208 (223)
..+| +++||++++++||..+.++|. ++.++||++|
T Consensus 179 -------~~~~~~s~eeai~l~~~al~~~~~rd~-~~~~~ei~~~ 215 (215)
T cd03754 179 -------KPDLIESYEETVELAISCLQTVLSTDF-KATEIEVGVV 215 (215)
T ss_pred -------ccccCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEC
Confidence 1247 999999999999999999996 4889999875
No 24
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.8e-41 Score=283.90 Aligned_cols=193 Identities=22% Similarity=0.295 Sum_probs=176.4
Q ss_pred cCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027437 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|++.+. .++..++.+||++|++++++++||+.+|++.+.++++.+++.|++.++++++
T Consensus 32 av~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 110 (241)
T PRK03996 32 AVKRGTTAVGVKTKDGVVLAVDKRITS-PLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEPIG 110 (241)
T ss_pred HHHhCCCEEEEEeCCEEEEEEeccCCC-cccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 467899999999999999999999984 4666788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh--c--CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCC
Q 027437 91 CPAMGQLLSNTLYYK--R--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~~~~--r--~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~ 166 (223)
++.+++.+++.++.. + .|||++++||||||++ +|+||.+||+|++.+++++|+|+|++.++++||+.|+
T Consensus 111 ~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~-gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~------ 183 (241)
T PRK03996 111 VETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDG-GPRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKNYK------ 183 (241)
T ss_pred HHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCC-cCEEEEECCCCCeecceEEEECCCcHHHHHHHHHhcc------
Confidence 999999999998543 2 7899999999999964 4999999999999999999999999999999999865
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEEeee
Q 027437 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREYME 219 (223)
Q Consensus 167 ~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~ 219 (223)
++|+++||++++++||+.+.++ ..++++++|++|+++|..++.++
T Consensus 184 -------~~~s~eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~~~~~~~~~ 228 (241)
T PRK03996 184 -------EDLSLEEAIELALKALAKANEG-KLDPENVEIAYIDVETKKFRKLS 228 (241)
T ss_pred -------cCCCHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCCCcEEECC
Confidence 6999999999999999999875 56889999999999986555543
No 25
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.8e-41 Score=278.73 Aligned_cols=183 Identities=17% Similarity=0.143 Sum_probs=168.4
Q ss_pred cCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027437 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|++.++ .+...++.+|||+|++|+++++||+.+|++.+.++++.+++.|++.++++++
T Consensus 26 a~~~G~tvIgik~kdgVvla~d~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~~~ 104 (212)
T cd03751 26 AVENSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTPIP 104 (212)
T ss_pred HHhcCCCEEEEEeCCEEEEEEEccccc-cccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 567899999999999999999999986 4555678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh----cCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCC
Q 027437 91 CPAMGQLLSNTLYYK----RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~~~~----r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~ 166 (223)
++.+++.|++.++.. ..|||++++|++|||++ +|+||.+||+|++.+++++|+|+|+..++++||+.|+
T Consensus 105 v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~-gp~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~~------ 177 (212)
T cd03751 105 VKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSD-GPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKF------ 177 (212)
T ss_pred HHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCC-cCEEEEECCCCCEEeeEEEEECCCCHHHHHHHHHhcc------
Confidence 999999999987543 27899999999999954 5999999999999999999999999999999999975
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEE
Q 027437 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVL 208 (223)
Q Consensus 167 ~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i 208 (223)
++||++||+++++++|..+++.+.....+|||.++
T Consensus 178 -------~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 178 -------SELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred -------CCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 69999999999999999999977677889998874
No 26
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=7.7e-41 Score=268.20 Aligned_cols=180 Identities=31% Similarity=0.458 Sum_probs=171.9
Q ss_pred CeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027437 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|++.+.+.....++.+|||+|+++++++++|..+|++.+.++++.++..|++.++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999777688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC--CCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCCCCCCC
Q 027437 96 QLLSNTLYYKRF--FPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 173 (223)
Q Consensus 96 ~~l~~~~~~~r~--~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~~~ 173 (223)
+.+++++|.++. |||++++|+||+|++++|+||.+||+|++.+++++++|+|+.+++++||+.|+
T Consensus 81 ~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~------------- 147 (182)
T cd01906 81 KLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYK------------- 147 (182)
T ss_pred HHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHcc-------------
Confidence 999999988875 99999999999997677999999999999999999999999999999999975
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEE
Q 027437 174 TPLSEAEAVDLVKTCFASATERDIYTANKLEIVVL 208 (223)
Q Consensus 174 ~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i 208 (223)
++||.+||++++++||+.+.++|..++.+++|.+|
T Consensus 148 ~~~s~~ea~~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 148 PDMTLEEAIELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred CCCCHHHHHHHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 69999999999999999999999989999999875
No 27
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=4.5e-41 Score=275.85 Aligned_cols=183 Identities=24% Similarity=0.333 Sum_probs=170.7
Q ss_pred cCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027437 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+++|+|+||++++||||||+|++.+.+ ++..++.+||++|++++++++||..+|++.+.+.++..++.|++.++++++
T Consensus 23 ~~~~G~tvigi~~~dgVvlaaD~~~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~ 101 (209)
T cd01911 23 AVKNGSTAVGIKGKDGVVLAVEKKVTSK-LLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPIP 101 (209)
T ss_pred HHHcCCCEEEEEECCEEEEEEEecCCcc-ccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4568999999999999999999999875 556688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--hhc--CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCC
Q 027437 91 CPAMGQLLSNTLY--YKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~~--~~r--~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~ 166 (223)
++.+++.+++.++ .++ .|||++++||+|+|++++|+||.+||.|++.+++++++|+|+..++++||+.|+
T Consensus 102 ~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~L~~~~~------ 175 (209)
T cd01911 102 VEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLEKRYK------ 175 (209)
T ss_pred HHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeCCCcHHHHHHHHHhcc------
Confidence 9999999999884 333 689999999999998777999999999999999999999999999999999854
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEE
Q 027437 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVL 208 (223)
Q Consensus 167 ~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i 208 (223)
|+|+.+||++++.+||..+.++|. ++.+++|+++
T Consensus 176 -------~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 176 -------KDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred -------cCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 799999999999999999999998 9999999875
No 28
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.6e-41 Score=274.61 Aligned_cols=183 Identities=21% Similarity=0.303 Sum_probs=170.0
Q ss_pred cCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027437 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|+|+|||+++||||||+|++.+. .++..++.+||++|++++++++||+.+|++.+.+.++.+++.|++.++++++
T Consensus 24 av~~G~t~igik~~dgvvla~d~~~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 102 (211)
T cd03756 24 AVKRGTTALGIKCKEGVVLAVDKRITS-KLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPID 102 (211)
T ss_pred HHHcCCCEEEEEECCEEEEEEeccCCC-cccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 467899999999999999999999974 4666788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--h--cCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCC
Q 027437 91 CPAMGQLLSNTLYY--K--RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~~~--~--r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~ 166 (223)
++.+++.+++.++. + +.|||++++||||||+. +|+||.+||+|++.+++++++|+|++.++++||+.|+
T Consensus 103 ~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~-~~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~------ 175 (211)
T cd03756 103 VEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDG-GPRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKEYK------ 175 (211)
T ss_pred HHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCC-CCEEEEECCCCCeeeeEEEEECCCCHHHHHHHHhhcc------
Confidence 99999999998844 3 37899999999999964 5999999999999999999999999999999999865
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEc
Q 027437 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLN 209 (223)
Q Consensus 167 ~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~ 209 (223)
|+|+++||++++++||..+.++|. ++++++|++|+
T Consensus 176 -------~~m~~~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~ 210 (211)
T cd03756 176 -------EDMSLEEAIELALKALYAALEENE-TPENVEIAYVT 210 (211)
T ss_pred -------CCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence 799999999999999999998776 89999999986
No 29
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-41 Score=264.28 Aligned_cols=188 Identities=21% Similarity=0.253 Sum_probs=173.6
Q ss_pred cCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027437 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
+.+.|+|.|||+.++||||++++|+++. +..+++..||++|++||+|++||+.+|++.++++.|.+++.|.+.|+++++
T Consensus 30 AikLGsTaIGv~TkEgVvL~vEKritSp-Lm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~i~ 108 (241)
T KOG0176|consen 30 AIKLGSTAIGVKTKEGVVLAVEKRITSP-LMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEPIS 108 (241)
T ss_pred HHhcCCceeeeeccceEEEEEeccccCc-ccCchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhceeecCCccc
Confidence 5688999999999999999999999986 666889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh-------c--CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCC
Q 027437 91 CPAMGQLLSNTLYYK-------R--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKS 161 (223)
Q Consensus 91 ~~~la~~l~~~~~~~-------r--~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~ 161 (223)
++.+.+.++++.-+. + .|||||++|+||+|.++ |+||+.||||+|.++++-|||+|++.+.+.|++.|+
T Consensus 109 VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~g-pqL~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e~~- 186 (241)
T KOG0176|consen 109 VESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETG-PQLYHLDPSGTFIRYKAKAIGSGSEGAESSLQEEYH- 186 (241)
T ss_pred HHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCC-ceEEEeCCCCceEEecceeccccchHHHHHHHHHHh-
Confidence 999999999987322 1 59999999999999555 999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeE
Q 027437 162 PSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIH 214 (223)
Q Consensus 162 ~~~~~~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~ 214 (223)
++|+++||+.+++..|+.+++. ..+.+|+++.+|+++|-.
T Consensus 187 ------------~~ltL~ea~~~~L~iLkqVMee-Kl~~~Nvev~~vt~e~~f 226 (241)
T KOG0176|consen 187 ------------KDLTLKEAEKIVLKILKQVMEE-KLNSNNVEVAVVTPEGEF 226 (241)
T ss_pred ------------hcccHHHHHHHHHHHHHHHHHH-hcCccceEEEEEcccCce
Confidence 5999999999999999999985 457789999999998643
No 30
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.4e-40 Score=271.42 Aligned_cols=182 Identities=19% Similarity=0.247 Sum_probs=167.2
Q ss_pred cCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027437 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+++|+|+|||+++||||||+|++.+.+ ++..+..+||++|++++++++||+.+|++.+.+.++.+++.|++.++++++
T Consensus 23 a~~~G~t~igik~~dgVvlaad~r~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 101 (213)
T cd03753 23 AIKLGSTAIGIKTKEGVVLAVEKRITSP-LMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPMT 101 (213)
T ss_pred HHhcCCCEEEEEeCCEEEEEEecccCCc-CcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4578999999999999999999999864 556678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc---------CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCC
Q 027437 91 CPAMGQLLSNTLYYKR---------FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKS 161 (223)
Q Consensus 91 ~~~la~~l~~~~~~~r---------~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~ 161 (223)
++.+++.+++.++.+. .|||++++|+||||+. +|+||.+||+|++.+++++|+|++++.++++|++.|+
T Consensus 102 ~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~-gp~Ly~vd~~G~~~~~~~~a~G~~~~~~~~~L~~~~~- 179 (213)
T cd03753 102 VESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDEN-GPQLFHTDPSGTFTRCDAKAIGSGSEGAQSSLQEKYH- 179 (213)
T ss_pred HHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCC-CCEEEEECCCCCeecccEEEECCCcHHHHHHHHhhcc-
Confidence 9999999999986521 4899999999999964 5999999999999999999999999999999999865
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEE
Q 027437 162 PSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVL 208 (223)
Q Consensus 162 ~~~~~~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i 208 (223)
++||.+||++++++||+.+.+++ .++.++||++|
T Consensus 180 ------------~~ls~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~ 213 (213)
T cd03753 180 ------------KDMTLEEAEKLALSILKQVMEEK-LNSTNVELATV 213 (213)
T ss_pred ------------CCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence 69999999999999999887765 68889999975
No 31
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=1e-38 Score=264.60 Aligned_cols=181 Identities=18% Similarity=0.187 Sum_probs=163.2
Q ss_pred cCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcC-CCC
Q 027437 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQM 89 (223)
Q Consensus 11 ~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~ 89 (223)
++++|+|+|||+++||||||+|++. ++.+|||+|++||+|++||+.+|++.+++.++.+++.|++.++ .++
T Consensus 23 av~~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~ 94 (228)
T TIGR03691 23 GIARGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDV 94 (228)
T ss_pred HHHcCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCc
Confidence 4578999999999999999999962 3578999999999999999999999999999999999999997 689
Q ss_pred CHHHHHHHHHHHHHhh---cCCCeeEEEEEEEEcC-CCceEEEEEcCCCceeeeC-eEEEcCChhhHHHHHhcccCCCCC
Q 027437 90 SCPAMGQLLSNTLYYK---RFFPYYSFNVLGGLDN-EGKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSP 164 (223)
Q Consensus 90 ~~~~la~~l~~~~~~~---r~~P~~v~~llaG~d~-~~~~~Ly~id~~G~~~~~~-~~aiG~g~~~~~~~Le~~~~~~~~ 164 (223)
+++.+++.+++.++.. +.|||+|++|++|||+ +.+|+||.+||+|++.+++ ++|+|+|++.++++||+.|+
T Consensus 95 ~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~---- 170 (228)
T TIGR03691 95 TGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESYR---- 170 (228)
T ss_pred cHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhcC----
Confidence 9999998887766432 4689999999999986 4569999999999999976 89999999999999999976
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHh--ccccCCCcEEEEEEcCCC
Q 027437 165 LLLPAQDAVTPLSEAEAVDLVKTCFASATE--RDIYTANKLEIVVLNKDG 212 (223)
Q Consensus 165 ~~~~~~~~~~~ls~~ea~~l~~~al~~~~~--~d~~~~~~i~i~~i~~~g 212 (223)
++||.+||++++++||..+.+ ++..++.++||.+|++++
T Consensus 171 ---------~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~ 211 (228)
T TIGR03691 171 ---------DGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSR 211 (228)
T ss_pred ---------CCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCC
Confidence 699999999999999999964 667889999999999765
No 32
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-38 Score=247.24 Aligned_cols=195 Identities=28% Similarity=0.357 Sum_probs=185.4
Q ss_pred CCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027437 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+..|||++|++|++||||++|+|.+.|.++.++..+|+.+|.|+|+|+-||.++|.|.+.+.++..+..|...+++++++
T Consensus 16 vstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v 95 (224)
T KOG0174|consen 16 VSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPLV 95 (224)
T ss_pred cccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCchH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCCCCC
Q 027437 92 PAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQD 171 (223)
Q Consensus 92 ~~la~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~ 171 (223)
...|+.+++++|++|- -+.+++|+||||+..++++|.+--.|++.+.+++.-|||+.+++++++..|
T Consensus 96 ~~aA~l~r~~~Y~~re-~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~------------ 162 (224)
T KOG0174|consen 96 HTAASLFREICYNYRE-MLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANW------------ 162 (224)
T ss_pred HHHHHHHHHHHHhCHH-hhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhc------------
Confidence 9999999999999872 367899999999987799999999999999999999999999999999985
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEEeeec
Q 027437 172 AVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREYMEL 220 (223)
Q Consensus 172 ~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~ 220 (223)
+|+|++||++.+..+|+..|+.||-.+|+-|.+.+|+++|+++..++.
T Consensus 163 -r~nMt~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~ 210 (224)
T KOG0174|consen 163 -RPNMTLEECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPG 210 (224)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecC
Confidence 579999999999999999999999999999999999999999887653
No 33
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-38 Score=239.61 Aligned_cols=203 Identities=24% Similarity=0.444 Sum_probs=194.7
Q ss_pred cCccCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCC
Q 027437 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNK 87 (223)
Q Consensus 8 ~~~~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 87 (223)
+++...+|++++|+++|++|.||+|.|....+...+.+.+|||+++|++++|.+|+..|++.+.++++.....|+++.++
T Consensus 1 m~i~synGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R 80 (204)
T KOG0180|consen 1 MSIMSYNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREER 80 (204)
T ss_pred CcceeecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhc
Confidence 35677789999999999999999999998887888899999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeC-eEEEcCChhhHHHHHhcccCCCCCCC
Q 027437 88 QMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 88 ~~~~~~la~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~-~~aiG~g~~~~~~~Le~~~~~~~~~~ 166 (223)
.+.|+.+++.+|.++|++|+-||.+..++||+|++++|+|...|..|.....+ |++.|.+++..++..|..|+
T Consensus 81 ~i~P~~~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~------ 154 (204)
T KOG0180|consen 81 EIKPETFSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYE------ 154 (204)
T ss_pred ccCcHHHHHHHHHHHHHhhcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcC------
Confidence 99999999999999999999999999999999999999999999999987654 99999999999999999964
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEEeeecCCC
Q 027437 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREYMELRKD 223 (223)
Q Consensus 167 ~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~~~~ 223 (223)
|||..|+.++.+..||..+.+||+.+|+...+.+|+|+.+..+.++.|||
T Consensus 155 -------pnmepd~LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv~~r~lK~RmD 204 (204)
T KOG0180|consen 155 -------PNMEPDELFETISQALLNAVDRDALSGWGAVVYIITKDKVTKRTLKGRMD 204 (204)
T ss_pred -------CCCCHHHHHHHHHHHHHhHhhhhhhccCCeEEEEEccchhhhhhhhhcCC
Confidence 89999999999999999999999999999999999999999999999998
No 34
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-37 Score=245.92 Aligned_cols=193 Identities=22% Similarity=0.265 Sum_probs=180.5
Q ss_pred cCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027437 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+.+..|+||+..+|||||+++++.+++.+-.+...+||++++|+|+|+++|+++|+..|++++|..+|+|.+.|++++|
T Consensus 27 ais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP 106 (249)
T KOG0178|consen 27 AISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEIP 106 (249)
T ss_pred HHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 45688999999999999999999999887777888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc----CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCC
Q 027437 91 CPAMGQLLSNTLYYKR----FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~~~~r----~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~ 166 (223)
++.|.+.++++.+.++ .||||||+|.+|||...+.+||..||||++..|++.++|.++..+++.|+..|++
T Consensus 107 ~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdykd----- 181 (249)
T KOG0178|consen 107 CEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLKQDYKD----- 181 (249)
T ss_pred HHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccceeeeccchHHHHHHHHhhhcc-----
Confidence 9999999999995543 7999999999999988779999999999999999999999999999999999985
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEE
Q 027437 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHR 215 (223)
Q Consensus 167 ~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~ 215 (223)
..+++++|+.+|++.|...++.++.+...+||+.+++++-+.
T Consensus 182 -------d~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~ 223 (249)
T KOG0178|consen 182 -------DENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKT 223 (249)
T ss_pred -------ccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCce
Confidence 456799999999999999999999999999999999987554
No 35
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-37 Score=250.63 Aligned_cols=190 Identities=27% Similarity=0.344 Sum_probs=183.7
Q ss_pred CCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHH
Q 027437 13 NNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCP 92 (223)
Q Consensus 13 ~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 92 (223)
.+|||++|++|++|||+|+|+|.+.|.+|.+..++||.+|+++++-+++|-++|++.+.+.+..+|+.|++++++.|++.
T Consensus 69 ~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVs 148 (285)
T KOG0175|consen 69 AHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVS 148 (285)
T ss_pred cCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCCCCCC
Q 027437 93 AMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA 172 (223)
Q Consensus 93 ~la~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~~ 172 (223)
..++.|++++|++|...+.++..|||||+.| |.||++|..|+....+-.++|||+.+|+++|+..|+
T Consensus 149 aASKllsN~~y~YkGmGLsmGtMi~G~Dk~G-P~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr------------ 215 (285)
T KOG0175|consen 149 AASKLLSNMVYQYKGMGLSMGTMIAGWDKKG-PGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYR------------ 215 (285)
T ss_pred HHHHHHHHHHhhccCcchhheeeEeeccCCC-CceEEEcCCCCEecCceEeecCCCceeEEeeccCCC------------
Confidence 9999999999999987889999999999776 999999999999999999999999999999999997
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEE
Q 027437 173 VTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHRE 216 (223)
Q Consensus 173 ~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~ 216 (223)
+|||.+||..|+++|+..|..||+.+|+-+.++.|+++|...+
T Consensus 216 -~dls~eEA~~L~rrAI~hAThRDaySGG~vnlyHv~edGW~~v 258 (285)
T KOG0175|consen 216 -YDLSDEEAYDLARRAIYHATHRDAYSGGVVNLYHVKEDGWVKV 258 (285)
T ss_pred -CCCCHHHHHHHHHHHHHHHHhcccccCceEEEEEECCccceec
Confidence 5999999999999999999999999999999999999997654
No 36
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-36 Score=246.16 Aligned_cols=197 Identities=21% Similarity=0.310 Sum_probs=184.3
Q ss_pred CCcCccCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhc
Q 027437 6 PAWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQH 85 (223)
Q Consensus 6 ~~~~~~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~ 85 (223)
..-+.+.+.|||++||.+|||||+++|+|.+.|..+...++.||+.+.++|+|+.+|.++|...+.+.+-.+.+.+++..
T Consensus 28 ~k~p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t 107 (271)
T KOG0173|consen 28 LKAPKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNT 107 (271)
T ss_pred CCCCcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhcc
Confidence 44566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCC
Q 027437 86 NKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (223)
Q Consensus 86 ~~~~~~~~la~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (223)
++.+.+-.+.+.+.+.+|.+.. -.++.+|++|+|+.| |+||.+.|.|+....+|.++|||+..++++||..|
T Consensus 108 ~R~~rVv~A~~mlkQ~LFrYqG-~IgA~LiiGGvD~TG-pHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~------ 179 (271)
T KOG0173|consen 108 GRKPRVVTALRMLKQHLFRYQG-HIGAALILGGVDPTG-PHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRW------ 179 (271)
T ss_pred CCCCceeeHHHHHHHHHHHhcC-cccceeEEccccCCC-CceEEEcCCCCcCccceeeeccchHHHHHHHHHhc------
Confidence 9999999999999999988764 378999999999877 99999999999999999999999999999999985
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEEe
Q 027437 166 LLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREY 217 (223)
Q Consensus 166 ~~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~~ 217 (223)
+|||++|||.+|+.+|+.+.+..|..+|+++++|+|++.++...+
T Consensus 180 -------k~dlt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~lr 224 (271)
T KOG0173|consen 180 -------KPDLTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEYLR 224 (271)
T ss_pred -------CcccCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCCccccc
Confidence 589999999999999999999999999999999999988876643
No 37
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-36 Score=241.16 Aligned_cols=191 Identities=18% Similarity=0.268 Sum_probs=175.1
Q ss_pred ccCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCC
Q 027437 10 PYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQM 89 (223)
Q Consensus 10 ~~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 89 (223)
.++.+|+|+||++++++|||+.+++.... +...+...||..+++|+++++||+.+|++.|++..|.+|+.|+++.+.|+
T Consensus 25 EAvrkGstaVgvrg~~~vvlgvEkkSv~~-Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShrlt~edpv 103 (249)
T KOG0183|consen 25 EAVRKGSTAVGVRGNNCVVLGVEKKSVPK-LQDERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDPV 103 (249)
T ss_pred HHHhcCceEEEeccCceEEEEEeecchhh-hhhhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhhcccCCCc
Confidence 36789999999999999999999987754 66778899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhc----CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCC
Q 027437 90 SCPAMGQLLSNTLYYKR----FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (223)
Q Consensus 90 ~~~~la~~l~~~~~~~r----~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (223)
+++.+.++|+.+.+.++ .||||++.|++|+|++|.|+||.+||+|.|.+|++.|+|.+++.+..+||+.|.+
T Consensus 104 tveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflEK~y~e---- 179 (249)
T KOG0183|consen 104 TVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLEKNYKE---- 179 (249)
T ss_pred HHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccccccccHHHHHHHHHhccc----
Confidence 99999999999985543 7999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCC-eEE
Q 027437 166 LLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDG-IHR 215 (223)
Q Consensus 166 ~~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g-~~~ 215 (223)
.+-.+..+++++++++|.++.+. .+++|+++++.+.+ .+.
T Consensus 180 -------~~~~~~~~~ikL~ir~LleVvqs---~~~nie~aVm~~~~~~~~ 220 (249)
T KOG0183|consen 180 -------EAIATEGETIKLAIRALLEVVQS---GGKNIEVAVMKRRKDLKM 220 (249)
T ss_pred -------ccccccccHHHHHHHHHHHHhhc---CCCeeEEEEEecCCceee
Confidence 24588999999999999999984 45899999999876 443
No 38
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-36 Score=232.97 Aligned_cols=189 Identities=25% Similarity=0.386 Sum_probs=179.8
Q ss_pred CCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027437 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (223)
Q Consensus 15 gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
|.+++||++.|+|++|+|+....+.+++.++.+|++.++++++|+++|..+|+.++.+++.+.++.|++++|.+++|..+
T Consensus 1 Me~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~a 80 (200)
T KOG0177|consen 1 METLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAA 80 (200)
T ss_pred CceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-hc-CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCCCCCC
Q 027437 95 GQLLSNTLYY-KR-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA 172 (223)
Q Consensus 95 a~~l~~~~~~-~r-~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~~ 172 (223)
|+++++.+.+ .| .+||.|++|+||+|++.+|.||++|..|+..+.+|++.|.|+.++.++|+++|+
T Consensus 81 ahFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~------------ 148 (200)
T KOG0177|consen 81 AHFTRRELAESLRSRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYK------------ 148 (200)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhC------------
Confidence 9999999954 23 789999999999999877999999999999999999999999999999999976
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEE
Q 027437 173 VTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHRE 216 (223)
Q Consensus 173 ~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~ 216 (223)
||||.+||+.+..+|+.++..|-...-.++.+.+|+|+|++..
T Consensus 149 -pdmt~eea~~lmkKCv~El~kRlvin~~~f~v~IVdkdGir~~ 191 (200)
T KOG0177|consen 149 -PDMTIEEALDLMKKCVLELKKRLVINLPGFIVKIVDKDGIRKL 191 (200)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHhcccCCCCcEEEEEcCCCceec
Confidence 7999999999999999999999988889999999999998754
No 39
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-36 Score=241.93 Aligned_cols=203 Identities=24% Similarity=0.361 Sum_probs=189.1
Q ss_pred CCCCCcCccCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHH
Q 027437 3 KQHPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQ 82 (223)
Q Consensus 3 ~~~~~~~~~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (223)
+-..+++|++ .||+|||+||+|||+||||+..++|++....+.++|++|+||+++|+||..+|++.+.+.+.....+..
T Consensus 30 ~~qrt~~p~v-TGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn 108 (256)
T KOG0185|consen 30 PIQRTLNPIV-TGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDN 108 (256)
T ss_pred CcccccCcee-ccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhccc
Confidence 3456899999 599999999999999999999999999999999999999999999999999999999999998887744
Q ss_pred -HhcCCCCCHHHHHHHHHHHHHhhc--CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhccc
Q 027437 83 -HQHNKQMSCPAMGQLLSNTLYYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 159 (223)
Q Consensus 83 -~~~~~~~~~~~la~~l~~~~~~~r--~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~ 159 (223)
+..+..+.|+.++++|.+++|.+| +.|++..++|||++.++.|.|-.+|-.|...+.+..|+|-|++.+.++|++.+
T Consensus 109 ~~~Dg~~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~ 188 (256)
T KOG0185|consen 109 RLDDGQSLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEW 188 (256)
T ss_pred ccccccccChHHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhh
Confidence 455689999999999999999987 99999999999999889999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEE
Q 027437 160 KSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHRE 216 (223)
Q Consensus 160 ~~~~~~~~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~ 216 (223)
+.+ .++++.++|.+++.+|++....||+.+.++++|++|+++|+.+.
T Consensus 189 ~~k----------~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i~ 235 (256)
T KOG0185|consen 189 EKK----------GEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTIS 235 (256)
T ss_pred hcc----------chhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccceEec
Confidence 732 36899999999999999999999999999999999999998754
No 40
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-35 Score=233.48 Aligned_cols=186 Identities=15% Similarity=0.165 Sum_probs=170.1
Q ss_pred ccCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCC
Q 027437 10 PYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQM 89 (223)
Q Consensus 10 ~~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 89 (223)
.++.+++|+|||+||||||+++++.++++ +.......|||.|++||+|+++|+.+|.+.+..++|.++..|+..|+.|+
T Consensus 29 KAven~~T~IGIk~kdGVVl~vEKli~Sk-Ly~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~pi 107 (254)
T KOG0184|consen 29 KAVENSGTCIGIKCKDGVVLAVEKLITSK-LYEPGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDPI 107 (254)
T ss_pred HHHhcCCcEEEEecCCeEEEEEeeeeccc-ccccCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCCC
Confidence 36789999999999999999999999987 45568889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhc----CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCC
Q 027437 90 SCPAMGQLLSNTLYYKR----FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (223)
Q Consensus 90 ~~~~la~~l~~~~~~~r----~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (223)
|...++..+..+++..+ .||||++.++++||. ++|+||.++|||..+.++++|+|.|.+.|++.||++--
T Consensus 108 P~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~-~g~~LymiepSG~~~~Y~~aaiGKgrq~aKtElEKL~~----- 181 (254)
T KOG0184|consen 108 PGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDD-EGPQLYMIEPSGSSYGYKGAAIGKGRQAAKTELEKLKI----- 181 (254)
T ss_pred chHHHHHHHHhhhheeehhhccccccceEEEEEEeC-CCceEEEEcCCCCccceeeeeccchhHHHHHHHHhccc-----
Confidence 99999999999996654 799999999999995 55999999999999999999999999999999999853
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcC
Q 027437 166 LLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNK 210 (223)
Q Consensus 166 ~~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~ 210 (223)
.+|+.+|+++.+.+.|..+.+......-.+||.|+..
T Consensus 182 --------~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~ 218 (254)
T KOG0184|consen 182 --------DEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGE 218 (254)
T ss_pred --------ccccHHHHHHHHHheeEeecccccCcceEEEEEEEEe
Confidence 4899999999999999988876655556789999885
No 41
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-35 Score=230.86 Aligned_cols=190 Identities=19% Similarity=0.207 Sum_probs=174.5
Q ss_pred cCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027437 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++.+|.+.|||+-.||||||++++..+ .+....+.+|+++|.++|+|.+||+.+|++.+++..|+.+++|...|+++++
T Consensus 28 Av~~G~~SvGi~A~nGvVlatekk~~s-~L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~~p 106 (233)
T KOG0181|consen 28 AVVNGQTSVGIKAANGVVLATEKKDVS-PLVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRVYGEPIP 106 (233)
T ss_pred HHhCCCCceeeeecCceEEEeccCCCC-ccchhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHHHHhcCCCC
Confidence 456899999999999999999997765 3666778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc----CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCC
Q 027437 91 CPAMGQLLSNTLYYKR----FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~~~~r----~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~ 166 (223)
+..|...++..+++++ .||||+++++||||+. +|.||.+||||++..|+++|+|.+...++.+||+.|+
T Consensus 107 t~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~-~p~LyQvdPSGsyf~wkatA~Gkn~v~aktFlEkR~~------ 179 (233)
T KOG0181|consen 107 TTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEG-GPLLYQVDPSGSYFAWKATAMGKNYVNAKTFLEKRYN------ 179 (233)
T ss_pred HHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCC-ceeEEEECCccceeehhhhhhccCcchHHHHHHHHhc------
Confidence 9999999999996654 7999999999999965 5999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEE
Q 027437 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHRE 216 (223)
Q Consensus 167 ~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~ 216 (223)
++|.++|++..++..|++..+-. .+.++|||.++..++.++.
T Consensus 180 -------edleldd~ihtailtlkE~fege-~~~~nieigv~~~~~F~~l 221 (233)
T KOG0181|consen 180 -------EDLELDDAIHTAILTLKESFEGE-MTAKNIEIGVCGENGFRRL 221 (233)
T ss_pred -------cccccchHHHHHHHHHHHHhccc-cccCceEEEEecCCceeec
Confidence 59999999999999999999865 4778999999998877653
No 42
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-35 Score=233.14 Aligned_cols=188 Identities=20% Similarity=0.228 Sum_probs=174.4
Q ss_pred cCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027437 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+++|++.||++.++..||+|-+|..+ -+++..+|||+|++|++++++|+++|++.|.+++|.+|..++..++++++
T Consensus 28 avkqGsatVGLks~thaVLvAl~r~~s---eLss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~p 104 (264)
T KOG0863|consen 28 AVKQGSATVGLKSRTHAVLVALKRAQS---ELSSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRPLP 104 (264)
T ss_pred HHhcccceEeecccceEEEeeeccchh---HHHHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhhccCCccc
Confidence 578999999999999999999998764 36788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc----CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCC
Q 027437 91 CPAMGQLLSNTLYYKR----FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~~~~r----~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~ 166 (223)
+..+...|.+.++..+ .|||||+++++|||+.| |+||.++|+|++.++++.+||+.++.+.++||+.+.+
T Consensus 105 v~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G-~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr~~e~----- 178 (264)
T KOG0863|consen 105 VLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESG-PHLYEFCPSGNVFECKGMSIGSRSQSARTYLERNLEE----- 178 (264)
T ss_pred HHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCC-ceeEEEcCCccEEEEeeeecccchhhHHHHHHHHHHH-----
Confidence 9999999999986543 79999999999999766 9999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcc-ccCCCcEEEEEEcCCCe
Q 027437 167 LPAQDAVTPLSEAEAVDLVKTCFASATERD-IYTANKLEIVVLNKDGI 213 (223)
Q Consensus 167 ~~~~~~~~~ls~~ea~~l~~~al~~~~~~d-~~~~~~i~i~~i~~~g~ 213 (223)
+++++++|.+..++.||+.+...| ..++.+++|+++.++-.
T Consensus 179 ------f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~p 220 (264)
T KOG0863|consen 179 ------FEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEP 220 (264)
T ss_pred ------HhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCc
Confidence 479999999999999999999754 67889999999999854
No 43
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=100.00 E-value=1e-32 Score=218.99 Aligned_cols=167 Identities=20% Similarity=0.225 Sum_probs=145.9
Q ss_pred CCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEc-cCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 027437 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKL-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPA 93 (223)
Q Consensus 15 gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 93 (223)
|||++||+++||||||+|+|.+.|.++.+++.+||++| +++++|++||..+|++.|.++++.+++.|+. +. .+.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--NL---LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--cc---HHH
Confidence 79999999999999999999999999999999999999 9999999999999999999999999998882 21 466
Q ss_pred HHHHHHHHHHhhc-CCCeeEEEEEEEEcCCCceEEEEEcCCCceeee--CeEEEcCChhhHHHHHhcccCCCCCCCCCCC
Q 027437 94 MGQLLSNTLYYKR-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQ 170 (223)
Q Consensus 94 la~~l~~~~~~~r-~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~--~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~ 170 (223)
+++.+..+ ...+ .+|+.+++|++ |+ |+||.+||.|++.+. ++.++|+|+.+++++||+.|+.
T Consensus 76 ~a~l~~~l-~~~~~~~~l~~~~lv~--d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~--------- 140 (172)
T PRK05456 76 AVELAKDW-RTDRYLRRLEAMLIVA--DK---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLEN--------- 140 (172)
T ss_pred HHHHHHHH-HhccCCCccEEEEEEE--cC---CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhc---------
Confidence 66555443 2223 36788999994 43 699999999999766 7999999999999999999762
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEE
Q 027437 171 DAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVV 207 (223)
Q Consensus 171 ~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~ 207 (223)
|+| ||++++++|++.+.+||..++++++|-.
T Consensus 141 ---~~m---eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 141 ---TDL---SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred ---CCC---CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 699 9999999999999999999999988754
No 44
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=100.00 E-value=2e-32 Score=216.05 Aligned_cols=166 Identities=19% Similarity=0.248 Sum_probs=142.8
Q ss_pred CeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccC-ceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027437 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLAD-KCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (223)
Q Consensus 16 ttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
||+|||+++||||||+|+|.+.|.++.+++.+||++|++ |++|++||..+|++.|.++++.+++.|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 699999999999999999999999999999999999999 999999999999999999999999999987764 44
Q ss_pred HHHHHHHHHhhcCCCee-EEEEEEEEcCCCceEEEEEcCCCceeee--CeEEEcCChhhHHHHHhcccCCCCCCCCCCCC
Q 027437 95 GQLLSNTLYYKRFFPYY-SFNVLGGLDNEGKGCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQD 171 (223)
Q Consensus 95 a~~l~~~~~~~r~~P~~-v~~llaG~d~~~~~~Ly~id~~G~~~~~--~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~ 171 (223)
++.+..+ ...+.+|+. +.++++++ ++||.+||.|++.+. ++.++|||+.+|+++||..|++
T Consensus 76 a~l~~~l-~~~~~~~~l~a~~iv~~~-----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~---------- 139 (171)
T cd01913 76 VELAKDW-RTDRYLRRLEAMLIVADK-----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDH---------- 139 (171)
T ss_pred HHHHHHH-HhccCcCceEEEEEEeCC-----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhcc----------
Confidence 4443333 233445665 66666533 389999999999998 4999999999999999999873
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEE
Q 027437 172 AVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVV 207 (223)
Q Consensus 172 ~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~ 207 (223)
.+|| +.+++.+|++.|++||..++++|++-.
T Consensus 140 --~~ms---~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 140 --TDLS---AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred --CCCC---HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 1499 559999999999999999999998754
No 45
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=100.00 E-value=3.2e-32 Score=214.89 Aligned_cols=166 Identities=20% Similarity=0.259 Sum_probs=143.1
Q ss_pred CeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEc-cCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027437 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKL-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (223)
Q Consensus 16 ttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
||+|||+++||||||+|+|.+.|.++.+++.+||++| +++++|++||..+|++.|.++++.+++.|++.. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6999999999999999999999999999999999999 599999999999999999999999999888632 3666
Q ss_pred HHHHHHHHHhhcCCCee-EEEEEEEEcCCCceEEEEEcCCCceeee--CeEEEcCChhhHHHHHhcccCCCCCCCCCCCC
Q 027437 95 GQLLSNTLYYKRFFPYY-SFNVLGGLDNEGKGCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQD 171 (223)
Q Consensus 95 a~~l~~~~~~~r~~P~~-v~~llaG~d~~~~~~Ly~id~~G~~~~~--~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~ 171 (223)
++.+++. ..++.+|+- +.+|++++ ++||.+||.|.+.+. ++.++|||+.+++++||..|++
T Consensus 76 a~l~~~~-~~~~~~~~l~a~~iv~~~-----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~---------- 139 (171)
T TIGR03692 76 VELAKDW-RTDRYLRRLEAMLIVADK-----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRN---------- 139 (171)
T ss_pred HHHHHHH-hhcccccccEEEEEEEcC-----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhc----------
Confidence 7776663 222333433 66666533 389999999999996 6999999999999999999953
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEE
Q 027437 172 AVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVV 207 (223)
Q Consensus 172 ~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~ 207 (223)
++|+ |++++.+|++.|++||..++++|+|-.
T Consensus 140 --~~~s---a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 140 --TDLS---AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred --CCCC---HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 5787 999999999999999999999998754
No 46
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5.1e-31 Score=208.45 Aligned_cols=200 Identities=19% Similarity=0.285 Sum_probs=181.8
Q ss_pred cCccCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCC
Q 027437 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNK 87 (223)
Q Consensus 8 ~~~~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 87 (223)
|....+.|-|.||++++|++|+++.++.+.+ ++.+++...+|+|+++|+|+++|..+|++..++++|.++.++++.||.
T Consensus 29 fkAin~~gltsVavrgkDcavvvsqKkvpDK-Lld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk~Gy 107 (246)
T KOG0182|consen 29 FKAINQAGLTSVAVRGKDCAVVVTQKKVPDK-LLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFRYKYGY 107 (246)
T ss_pred HHHhhcCCCceEEEcCCceEEEEecccCccc-ccccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhhhhhcCC
Confidence 4445555999999999999999999999986 677788999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCC
Q 027437 88 QMSCPAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPS 163 (223)
Q Consensus 88 ~~~~~~la~~l~~~~--~~~r--~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~ 163 (223)
++|++.|++.++++. |+++ +||+||.+++.|+|++.||.+|..||.|-+..+++++.|.....+.++||+.|+++
T Consensus 108 emp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLEKk~Kk~- 186 (246)
T KOG0182|consen 108 EMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQEATSFLEKKYKKD- 186 (246)
T ss_pred CCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccceeeecccchhhHHHHHHHhhccC-
Confidence 999999999999988 4455 89999999999999998899999999999999999999999999999999999862
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEEeeec
Q 027437 164 PLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREYMEL 220 (223)
Q Consensus 164 ~~~~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~ 220 (223)
.+++.++++++++.||..++.-|. ....+||.+++++...+..+..
T Consensus 187 ----------~~~t~~e~ve~ai~al~~sl~~Df-k~se~EVgvv~~~~p~f~~Ls~ 232 (246)
T KOG0182|consen 187 ----------IDLTFEETVETAISALQSSLGIDF-KSSELEVGVVTVDNPEFRILSA 232 (246)
T ss_pred ----------ccchHHHHHHHHHHHHHHHHhccc-CCcceEEEEEEcCCcceeeccH
Confidence 458999999999999999999886 4579999999998876665543
No 47
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.97 E-value=1.4e-28 Score=191.75 Aligned_cols=161 Identities=27% Similarity=0.339 Sum_probs=152.4
Q ss_pred CeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027437 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
+|+||++++||||||+|++.+.+........+|+++++++++++++|..+|++.+.++++..++.|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999998776678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc-CCCeeEEEEEEEEcCCCceEEEEEcCCCceeee-CeEEEcCChhhHHHHHhcccCCCCCCCCCCCCCC
Q 027437 96 QLLSNTLYYKR-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 173 (223)
Q Consensus 96 ~~l~~~~~~~r-~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~-~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~~~ 173 (223)
+.+++.++..+ .+|+++++|+||+|+ ++|+||.+||+|++.+. +++++|.++..+.++|++.++
T Consensus 81 ~~~~~~~~~~~~~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~------------- 146 (164)
T cd01901 81 KELAKLLQVYTQGRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYK------------- 146 (164)
T ss_pred HHHHHHHHHhcCCCCcceEEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhc-------------
Confidence 99999998776 589999999999997 66999999999999999 899999999999999999976
Q ss_pred CCCCHHHHHHHHHHHHH
Q 027437 174 TPLSEAEAVDLVKTCFA 190 (223)
Q Consensus 174 ~~ls~~ea~~l~~~al~ 190 (223)
++++.+|+++++..||.
T Consensus 147 ~~~~~~~~~~~~~~~l~ 163 (164)
T cd01901 147 PDMTLEEAVELALKALK 163 (164)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 58999999999999985
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.1e-17 Score=127.83 Aligned_cols=171 Identities=19% Similarity=0.228 Sum_probs=136.0
Q ss_pred CCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccC-ceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHH
Q 027437 14 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLAD-KCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCP 92 (223)
Q Consensus 14 ~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 92 (223)
+|||+++++-++-|+||+|.++|.|+.++..+.+|+.+|.. .++.|++|.++|+..|.+.+..+++.|.-..-+ .+-
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~L~r--aav 80 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGDLFR--AAV 80 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCcHHH--HHH
Confidence 79999999999999999999999999999999998888875 699999999999999999999999887521111 344
Q ss_pred HHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeee--CeEEEcCChhhHHHHHhcccCCCCCCCCCCC
Q 027437 93 AMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQ 170 (223)
Q Consensus 93 ~la~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~--~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~ 170 (223)
.+++.++.-.+- |-+.+-+|++ |++ .+|-+...|-..+. +..|||||..++++.....++.
T Consensus 81 elaKdwr~Dk~l---r~LEAmllVa--d~~---~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~--------- 143 (178)
T COG5405 81 ELAKDWRTDKYL---RKLEAMLLVA--DKT---HILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMEN--------- 143 (178)
T ss_pred HHHHhhhhhhHH---HHHhhheeEe--CCC---cEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhc---------
Confidence 455555443333 3366667775 443 57888888887653 3999999999999999998864
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEc
Q 027437 171 DAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLN 209 (223)
Q Consensus 171 ~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~ 209 (223)
+++| |.+++.++|..+.+-+.+++.++.|-.+.
T Consensus 144 ---~~ls---A~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 144 ---TELS---AREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred ---cCCC---HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 5776 66788889998888888888888877654
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.3e-14 Score=115.01 Aligned_cols=185 Identities=19% Similarity=0.203 Sum_probs=147.0
Q ss_pred CCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEcc---Cc-eEEEecCChhHHHHHHHHHHHHHHHHHHh-cCCCC
Q 027437 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLA---DK-CVMASSGFQADVKALQKLLAARHLIYQHQ-HNKQM 89 (223)
Q Consensus 15 gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~---~~-i~~~~sG~~~D~~~l~~~~~~~~~~~~~~-~~~~~ 89 (223)
||.|||++-+.|.|+++|+|...| +-.....+|+|... ++ +++..+|..+-.+.+++.+.+..+...-. .-.-+
T Consensus 1 MTYCv~l~l~~GlVf~sDsRTNAG-vD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~ 79 (255)
T COG3484 1 MTYCVGLILDFGLVFGSDSRTNAG-VDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIP 79 (255)
T ss_pred CceEEEEEeccceEEecccccccC-chHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcch
Confidence 689999999999999999999988 33446778887764 45 56678999999999999998777622111 11223
Q ss_pred CHHHHHHHHHHHHH---hh-c------CCCeeEEEEEEEEcCCCceEEEEEcCCCceee----eCeEEEcCChhhHHHHH
Q 027437 90 SCPAMGQLLSNTLY---YK-R------FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYER----VGYSSQGSGSTLIMPFL 155 (223)
Q Consensus 90 ~~~~la~~l~~~~~---~~-r------~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~----~~~~aiG~g~~~~~~~L 155 (223)
++-..+..+...+. .+ + .--|.|++|++|.-..+.|+||.+.|.|++.+ .+|.-|| -..+-+++|
T Consensus 80 sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiG-EtKYGKPil 158 (255)
T COG3484 80 SMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIG-ETKYGKPIL 158 (255)
T ss_pred hHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEcc-ccccCchhh
Confidence 45555555554442 21 1 35688999999988777799999999999975 4699999 556889999
Q ss_pred hcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeE
Q 027437 156 DNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIH 214 (223)
Q Consensus 156 e~~~~~~~~~~~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~ 214 (223)
++.+.. +++++|+.++++-++...+..+.+.|-++++.++.++...
T Consensus 159 dR~i~~-------------~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds~~ 204 (255)
T COG3484 159 DRTITY-------------DTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADSFS 204 (255)
T ss_pred hhhhhc-------------cCCHHHHhhheEEecchhhhccccccCCceeEEEecccee
Confidence 999874 9999999999999999999999999999999999999754
No 50
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=96.98 E-value=0.078 Score=42.55 Aligned_cols=156 Identities=13% Similarity=0.123 Sum_probs=88.5
Q ss_pred CCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027437 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (223)
Q Consensus 15 gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
|+.+||..+++|.|||+|+|. ++|-|.-.....|.+. +..|+=-+=+.|
T Consensus 1 MSLII~y~GknGaViaGDkR~----------------------I~F~G~~~~re~LEee---------LYsG~IktdeEL 49 (194)
T PF09894_consen 1 MSLIIAYYGKNGAVIAGDKRN----------------------IAFRGDEEKREKLEEE---------LYSGKIKTDEEL 49 (194)
T ss_pred CeEEEEEecCCCcEEecccee----------------------eeecCCHHHHHHHHHH---------HhCCccCCHHHH
Confidence 688999999999999999873 1333444444444332 334444455555
Q ss_pred HHHHHHHH---H--hhc--CCCeeEEEEEEEEcCC-----CceEEEEEcCCCceee-----eCeEEEcC-------Chhh
Q 027437 95 GQLLSNTL---Y--YKR--FFPYYSFNVLGGLDNE-----GKGCVYTYDAVGSYER-----VGYSSQGS-------GSTL 150 (223)
Q Consensus 95 a~~l~~~~---~--~~r--~~P~~v~~llaG~d~~-----~~~~Ly~id~~G~~~~-----~~~~aiG~-------g~~~ 150 (223)
.+....+= + -.| .+-.+- +|++-+..- .+-++|-+-..-...+ ..-...|. |..+
T Consensus 50 ~kkA~Elgv~i~I~D~r~KV~~~~~-vlvGEV~s~~g~~skRRRiY~t~g~~~Ivei~~~~i~~~~~g~~sgiIVfGNk~ 128 (194)
T PF09894_consen 50 LKKAEELGVKIKITDDREKVRKIGD-VLVGEVTSISGKDSKRRRIYATKGKYAIVEIENDEITNKSRGEGSGIIVFGNKF 128 (194)
T ss_pred HHHHHHcCCEEEEecCchheEEeCC-EEEEEEEEEcCccceeeEEEecCCCEEEEEecCCeEEEEecCCceeEEEECCHH
Confidence 55444321 1 011 222222 333333221 1245665322222211 11112222 3455
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCC
Q 027437 151 IMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKD 211 (223)
Q Consensus 151 ~~~~Le~~~~~~~~~~~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~ 211 (223)
.+.+-++.+++ .|.|.|+++++..+..++|..+...-+..+..+++...++.
T Consensus 129 ~K~ia~~~lkk---------~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 129 TKEIANKELKK---------YWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHHH---------hcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 55544444432 26689999999999999999998888888889999887764
No 51
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.56 E-value=1 Score=37.65 Aligned_cols=157 Identities=13% Similarity=0.101 Sum_probs=94.7
Q ss_pred CCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027437 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (223)
Q Consensus 15 gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
||.+|+..+++|.|+|.|+|.- ++-|.-.|...|.+ ++..|+-.+-+.|
T Consensus 1 MtLviay~gknGaviaGDrR~i----------------------~frgdee~re~lEe---------kLYsGeIkteEEL 49 (293)
T COG4079 1 MTLVIAYIGKNGAVIAGDRREI----------------------TFRGDEEDREKLEE---------KLYSGEIKTEEEL 49 (293)
T ss_pred CeEEEEEecCCCcEEeccceEE----------------------EEecChhHHHHHHH---------HhhcCccccHHHH
Confidence 6889999999999999998741 23344455444433 3345655566777
Q ss_pred HHHHHHHH--H-----hhcCCCeeEEEEEEEEcCCC-----ceEEEEEcCCCceee-----------eC-eEEEcCChhh
Q 027437 95 GQLLSNTL--Y-----YKRFFPYYSFNVLGGLDNEG-----KGCVYTYDAVGSYER-----------VG-YSSQGSGSTL 150 (223)
Q Consensus 95 a~~l~~~~--~-----~~r~~P~~v~~llaG~d~~~-----~~~Ly~id~~G~~~~-----------~~-~~aiG~g~~~ 150 (223)
+++...+= . ..+.+-..-+.+++-+...+ +-++|.+-..-+..+ .. ..-|=.|..+
T Consensus 50 ~r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~ 129 (293)
T COG4079 50 ARKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVFGNKF 129 (293)
T ss_pred HHHHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEECcHH
Confidence 76665432 1 11122232334444443322 234664332222222 11 2233335566
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCC
Q 027437 151 IMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKD 211 (223)
Q Consensus 151 ~~~~Le~~~~~~~~~~~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~ 211 (223)
++..-.+.++ ..|.+.++++++..+..++|..+...-++.+.++++..+.+.
T Consensus 130 ~Ke~aneflk---------~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~ 181 (293)
T COG4079 130 TKEVANEFLK---------DNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSN 181 (293)
T ss_pred HHHHHHHHHH---------hhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCC
Confidence 6665555544 237889999999999999999998777788889999988764
No 52
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=85.92 E-value=1.1 Score=33.98 Aligned_cols=43 Identities=23% Similarity=0.309 Sum_probs=37.4
Q ss_pred EEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCCCCCCCCCCCHHHHHHH
Q 027437 129 TYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDL 184 (223)
Q Consensus 129 ~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~ea~~l 184 (223)
.+|-+|.+.+.+|-..|.|+..+.+.+-.. |...+++||+..+
T Consensus 72 kvd~~g~I~dakFKTFGCGSAIASSS~aTe-------------wvkgkt~dea~kI 114 (157)
T KOG3361|consen 72 KVDDSGVIEDAKFKTFGCGSAIASSSLATE-------------WVKGKTLDEALKI 114 (157)
T ss_pred EECCCCcEEEeeeeecccchHhhhhHHHHH-------------HHccccHHHHHhc
Confidence 588899999999999999999999888776 5568999999854
No 53
>PRK09732 hypothetical protein; Provisional
Probab=76.67 E-value=12 Score=28.52 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEE
Q 027437 174 TPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHRE 216 (223)
Q Consensus 174 ~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~ 216 (223)
+.||++.|.+++..++..+.+. +.++.|+|++..|.-..
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~G~l~a 43 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDGGHLLA 43 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCCCCEEE
Confidence 4799999999999999988874 46999999999995443
No 54
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=73.26 E-value=16 Score=27.98 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCe
Q 027437 174 TPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGI 213 (223)
Q Consensus 174 ~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~ 213 (223)
+.+|+++|.+++..++..+.+. +.++.+.+++..|-
T Consensus 6 ~~Ls~e~a~~ii~aA~a~a~~~----g~~VtvaVVD~~G~ 41 (141)
T COG3193 6 PVLSLELANKIIAAAVAEAQQL----GVPVTVAVVDAGGH 41 (141)
T ss_pred cccCHHHHHHHHHHHHHHHHHh----CCceEEEEECCCCC
Confidence 6899999999999999988763 68999999999994
No 55
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=62.90 E-value=15 Score=27.49 Aligned_cols=38 Identities=24% Similarity=0.258 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEE
Q 027437 175 PLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHRE 216 (223)
Q Consensus 175 ~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~ 216 (223)
.+|.++|.+++..++..+.++. .++-|++++..|....
T Consensus 2 ~l~~~~A~~l~~~a~~~a~~~g----~~v~iaVvd~~G~~~~ 39 (132)
T PF03928_consen 2 SLTLEDAWKLGDAAVEEARERG----LPVSIAVVDAGGHLLA 39 (132)
T ss_dssp EE-HHHHHHHHHHHHHHHHHTT-------EEEEEETTS-EEE
T ss_pred CcCHHHHHHHHHHHHHHHHHhC----CCeEEEEEECCCCEEE
Confidence 5799999999999999998753 4689999999995443
No 56
>PF13983 YsaB: YsaB-like lipoprotein
Probab=55.05 E-value=39 Score=22.59 Aligned_cols=57 Identities=14% Similarity=0.254 Sum_probs=36.3
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHhhc--------CCCeeEEEEEEEEcCCCceEEEEEcCCCceee
Q 027437 82 QHQHNKQMSCPAMGQLLSNTLYYKR--------FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYER 138 (223)
Q Consensus 82 ~~~~~~~~~~~~la~~l~~~~~~~r--------~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~ 138 (223)
+....+.+.++.+++.=+..-|.-. +-.|.-|.=+-|+-...+.+++++||+|.+..
T Consensus 9 kvsp~~sL~ME~lCk~~AA~RYnt~~q~idv~~FeqfQgSYEm~G~T~r~E~FvCSFD~dGqFLH 73 (77)
T PF13983_consen 9 KVSPQRSLNMEQLCKDQAAHRYNTGAQKIDVTGFEQFQGSYEMRGYTARKEGFVCSFDADGQFLH 73 (77)
T ss_pred ccCcccccCHHHHHHHHHHHhhcCCceeEeecchhhhccceEeecccccccceEEeECCCCcEEE
Confidence 3444556677777776655554321 33455555566665555689999999998864
No 57
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=41.83 E-value=51 Score=26.74 Aligned_cols=41 Identities=17% Similarity=0.277 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEEeeec
Q 027437 180 EAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREYMEL 220 (223)
Q Consensus 180 ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~ 220 (223)
|++...+..|......|+..-.-++|.+|+-+|.-+++.|+
T Consensus 22 ealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf 62 (207)
T COG4245 22 EALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPF 62 (207)
T ss_pred HHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEech
Confidence 56677777888888888888888999999999876676654
No 58
>PRK02487 hypothetical protein; Provisional
Probab=37.39 E-value=1.4e+02 Score=23.18 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=29.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCe
Q 027437 173 VTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGI 213 (223)
Q Consensus 173 ~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~ 213 (223)
.+.++.++|.+++..++..+.++ +.++.|.|++ .|.
T Consensus 20 ~~~l~~~~A~~l~~~a~~~A~~~----g~~v~IaVv~-~G~ 55 (163)
T PRK02487 20 FPHFDNDDAWQLGSLLVELARER----GLPIAIDITL-NGQ 55 (163)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEE-CCc
Confidence 36899999999999999988764 4589999985 663
No 59
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=30.86 E-value=83 Score=26.76 Aligned_cols=29 Identities=31% Similarity=0.502 Sum_probs=21.9
Q ss_pred EEEEcCCCceEEEEEcCCCceeee---CeEEEcCCh
Q 027437 116 LGGLDNEGKGCVYTYDAVGSYERV---GYSSQGSGS 148 (223)
Q Consensus 116 laG~d~~~~~~Ly~id~~G~~~~~---~~~aiG~g~ 148 (223)
++|.| -.+..+|..|....+ .-||.|.|+
T Consensus 104 IGGQD----~K~I~~~~~G~v~~f~MNdkCAAGTG~ 135 (262)
T TIGR02261 104 IGALH----GRAIRMDERGKVEAYKMTSQCASGSGQ 135 (262)
T ss_pred eCCCc----eEEEEEcCCCcEeeEEecCcccccccH
Confidence 56666 457889999988654 388999886
No 60
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=29.88 E-value=74 Score=19.59 Aligned_cols=32 Identities=22% Similarity=0.160 Sum_probs=25.9
Q ss_pred EEEcCCCceeeeCeEEEcCChhhHHHHHhccc
Q 027437 128 YTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 159 (223)
Q Consensus 128 y~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~ 159 (223)
|.|+|+|.+...--...|+....+...||...
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 67899999988777778888888888787764
No 61
>PRK10465 hydrogenase 2-specific chaperone; Provisional
Probab=27.26 E-value=53 Score=25.75 Aligned_cols=75 Identities=16% Similarity=0.079 Sum_probs=53.5
Q ss_pred CCCeeEEEEEE-EEcCC-----CceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCCCCCCCCCCCHHH
Q 027437 107 FFPYYSFNVLG-GLDNE-----GKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAE 180 (223)
Q Consensus 107 ~~P~~v~~lla-G~d~~-----~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~e 180 (223)
.-|+..++++. |-+.+ -+-++..-=|+|.+...-..--|.|.+.+.+++.-.. +-++-++
T Consensus 57 iTPWfmnLV~LPg~~q~w~~~~~G~k~~~~lP~G~~~F~~~~~~~~G~y~sCSLfSPm~--------------~f~~~~~ 122 (159)
T PRK10465 57 LTPWMLSAVILPGPDQLWPRRKVGEKLGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLD--------------PSLSAEQ 122 (159)
T ss_pred cchhhHhheeccCcccccccCCCcceEEEecCCceEEEEeecCCCCcceeEeeccCCcc--------------cccCHHH
Confidence 35777777743 32221 1245667789999988777777888888888766553 3689999
Q ss_pred HHHHHHHHHHHHHhc
Q 027437 181 AVDLVKTCFASATER 195 (223)
Q Consensus 181 a~~l~~~al~~~~~~ 195 (223)
|+.++..||+.+...
T Consensus 123 A~~~A~a~l~~lls~ 137 (159)
T PRK10465 123 GVRLADDCARMLLSL 137 (159)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999987753
No 62
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=26.70 E-value=1.3e+02 Score=26.12 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=22.4
Q ss_pred EEEEEcCCCceEEEEEcCCCceeee---CeEEEcCCh
Q 027437 115 VLGGLDNEGKGCVYTYDAVGSYERV---GYSSQGSGS 148 (223)
Q Consensus 115 llaG~d~~~~~~Ly~id~~G~~~~~---~~~aiG~g~ 148 (223)
=++|.| -.+..+|..|...++ .-||.|.|+
T Consensus 131 DIGGQD----sK~I~~d~~G~v~dF~MNdkCAAGTGr 163 (293)
T TIGR03192 131 DMGGQD----CKAIHCDEKGKVTNFLMNDKCAAGTGR 163 (293)
T ss_pred EeCCCc----eEEEEEcCCCcEeeeeecCcccccccH
Confidence 356766 467788999987654 388999886
No 63
>PRK13599 putative peroxiredoxin; Provisional
Probab=25.79 E-value=1.9e+02 Score=23.58 Aligned_cols=61 Identities=15% Similarity=0.065 Sum_probs=40.8
Q ss_pred ceEEEEEcCCCceeeeC--eEEEcCChhhHHHHHhcccCCCCCCCCCCCCCCC------------CCCHHHHHHH
Q 027437 124 KGCVYTYDAVGSYERVG--YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVT------------PLSEAEAVDL 184 (223)
Q Consensus 124 ~~~Ly~id~~G~~~~~~--~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~~~~------------~ls~~ea~~l 184 (223)
.|..|.+||.|.+.... -..+|.....+...|++......-.-..+..|.| ..+.+||.+.
T Consensus 119 ~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq~~~~~~~~~p~~w~~~~~~g~~~~~~~~~~~~~~~~~ 193 (215)
T PRK13599 119 VRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQTADQYGVALPEKWPNNYLIKDHVIVPPSTDEASANER 193 (215)
T ss_pred eeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhhhhhhcCCCcCCCCCCCCCCCCcEEEcCCCCHHHHHHh
Confidence 38899999999875432 3567888888888888753211112357788875 4666776443
No 64
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=24.28 E-value=83 Score=27.12 Aligned_cols=72 Identities=15% Similarity=0.163 Sum_probs=42.9
Q ss_pred EEEcCC-CceEEEEEcCCCceeeeCeEEEcCC-hhhHHHHHhcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 027437 117 GGLDNE-GKGCVYTYDAVGSYERVGYSSQGSG-STLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATE 194 (223)
Q Consensus 117 aG~d~~-~~~~Ly~id~~G~~~~~~~~aiG~g-~~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~ea~~l~~~al~~~~~ 194 (223)
-|.|+. |.+-.......|-|.+. ..|.. -....+.|-+.+.. +++++|+|++|...=.....+
T Consensus 78 LG~DP~tG~eI~~k~GryGPYVq~---~lg~~~~kpkraSLpkg~~~------------e~ItLE~AL~LLsLPR~iG~h 142 (298)
T COG1754 78 LGIDPETGEEIYLKNGRYGPYVQE---QLGDPKPKPKRASLPKGWKP------------ETITLEKALKLLSLPRVIGKH 142 (298)
T ss_pred cccCCCCCceeEEeccCCCceeee---ecCCCCCCcccccCCCCCCh------------hhCcHHHHHHHHcCchhhCCC
Confidence 478865 65666678888877654 45655 33444555555442 479999999886443333332
Q ss_pred ccccCCCcEEE
Q 027437 195 RDIYTANKLEI 205 (223)
Q Consensus 195 ~d~~~~~~i~i 205 (223)
..++..|..
T Consensus 143 --p~sge~I~a 151 (298)
T COG1754 143 --PDSGEEISA 151 (298)
T ss_pred --CCCCcEEEe
Confidence 345555543
No 65
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=23.30 E-value=1.2e+02 Score=20.77 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEE
Q 027437 175 PLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHR 215 (223)
Q Consensus 175 ~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~ 215 (223)
.+|.+||.+.++++|..... ++.-.+++++.+|+..
T Consensus 34 ~ls~eea~~~a~~~l~~~r~-----~~~gY~fi~d~~g~~l 69 (95)
T PF08269_consen 34 KLSEEEAQQQAREALRALRY-----GGDGYFFIYDMDGVVL 69 (95)
T ss_dssp -----TTHHHHHHHHHH--S-----BTTB--EEE-TTSBEE
T ss_pred CccHHHHHHHHHHHHhcccc-----CCCCeEEEEeCCCeEE
Confidence 69999999999999976543 2344788889998753
No 66
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=22.24 E-value=1.5e+02 Score=27.13 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=21.7
Q ss_pred EEEEcCCCceEEEEEcCCCceeee---CeEEEcCCh
Q 027437 116 LGGLDNEGKGCVYTYDAVGSYERV---GYSSQGSGS 148 (223)
Q Consensus 116 laG~d~~~~~~Ly~id~~G~~~~~---~~~aiG~g~ 148 (223)
++|.| -.+..+|+.|....+ .-||.|.|+
T Consensus 274 IGGQD----sK~I~ld~~G~V~dF~MNDKCAAGTGr 305 (432)
T TIGR02259 274 IGGQD----TKGIQIDDHGIVENFQMNDRCAAGCGR 305 (432)
T ss_pred eCCCc----eEEEEEcCCCcEeeeeecCcccccchH
Confidence 56665 457889999987643 388999886
No 67
>PF12120 Arr-ms: Rifampin ADP-ribosyl transferase; InterPro: IPR021975 This domain is part of the beta subunit of bacterial DNA dependent RNA polymerase. This domain is the binding site for the antibacterial drug rifampin (and its analogues) which blocks the DNA/RNA tunnel and prevents initiation of transcription. ; PDB: 2HW2_A.
Probab=21.06 E-value=61 Score=23.14 Aligned_cols=19 Identities=32% Similarity=0.709 Sum_probs=12.0
Q ss_pred CCceEEEEEcCCCceeeeC
Q 027437 122 EGKGCVYTYDAVGSYERVG 140 (223)
Q Consensus 122 ~~~~~Ly~id~~G~~~~~~ 140 (223)
+|.+++|.+.|.|.++..+
T Consensus 52 ~g~~RiYiVEPtG~~EdDP 70 (100)
T PF12120_consen 52 EGRGRIYIVEPTGPFEDDP 70 (100)
T ss_dssp SS--EEEEEEESS--EE-G
T ss_pred CCCCcEEEEccCCCcccCc
Confidence 5678999999999998754
Done!