Query 027437
Match_columns 223
No_of_seqs 134 out of 1085
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 16:34:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027437.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027437hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_M 20S proteasome; cell cy 100.0 2.3E-52 7.7E-57 342.4 29.8 213 7-223 1-213 (213)
2 1ryp_M 20S proteasome; multica 100.0 1.7E-51 5.8E-56 339.4 28.1 217 7-223 1-222 (222)
3 1iru_J 20S proteasome; cell cy 100.0 4.4E-50 1.5E-54 327.0 27.5 203 8-223 1-205 (205)
4 1ryp_J 20S proteasome; multica 100.0 3.1E-49 1.1E-53 321.8 27.8 202 8-223 1-204 (204)
5 1yar_H Proteasome beta subunit 100.0 6E-48 2.1E-52 317.1 25.7 193 8-215 1-194 (217)
6 3h4p_a Proteasome subunit beta 100.0 8.5E-47 2.9E-51 310.7 23.7 189 15-216 1-190 (219)
7 1j2q_H Proteasome beta subunit 100.0 7.4E-46 2.5E-50 301.4 26.3 186 16-215 1-187 (202)
8 1g0u_M Proteasome component PR 100.0 2.4E-46 8.4E-51 316.3 24.3 202 2-217 29-243 (266)
9 1ryp_K 20S proteasome; multica 100.0 5E-46 1.7E-50 301.4 25.1 190 15-217 1-193 (198)
10 1ryp_H 20S proteasome; multica 100.0 8.9E-46 3.1E-50 301.6 26.4 194 10-218 4-197 (205)
11 1ryp_N 20S proteasome; multica 100.0 5E-46 1.7E-50 308.7 24.0 193 12-217 5-210 (233)
12 1iru_N 20S proteasome; cell cy 100.0 6.3E-46 2.2E-50 305.4 23.8 194 12-217 5-201 (219)
13 1iru_H 20S proteasome; cell cy 100.0 1.7E-45 5.6E-50 300.0 25.8 191 16-220 1-191 (205)
14 3nzj_K Proteasome component PR 100.0 1.9E-45 6.4E-50 313.3 26.2 194 11-217 71-264 (287)
15 1iru_K 20S proteasome; cell cy 100.0 2.3E-45 8E-50 298.2 24.6 190 15-217 1-192 (201)
16 1ryp_A 20S proteasome; multica 100.0 1.6E-45 5.6E-50 307.5 23.7 196 11-214 25-225 (243)
17 1ryp_L 20S proteasome; multica 100.0 5.6E-45 1.9E-49 298.4 26.2 188 16-216 1-188 (212)
18 1iru_L 20S proteasome; cell cy 100.0 8.4E-45 2.9E-49 295.6 26.9 187 16-216 1-187 (204)
19 3unf_H Proteasome subunit beta 100.0 1.3E-44 4.5E-49 300.3 26.1 187 16-217 1-187 (234)
20 3nzj_H Proteasome component PU 100.0 1.3E-44 4.6E-49 304.4 26.4 189 9-212 23-211 (261)
21 1iru_A 20S proteasome; cell cy 100.0 5.9E-45 2E-49 304.6 23.6 195 12-219 32-231 (246)
22 1ryp_C 20S proteasome; multica 100.0 1.6E-44 5.5E-49 301.6 24.0 190 12-214 28-223 (244)
23 1iru_C 20S proteasome; cell cy 100.0 1.2E-44 4E-49 305.2 23.2 189 12-213 28-221 (261)
24 1ryp_I 20S proteasome; multica 100.0 6.1E-44 2.1E-48 294.2 26.2 187 16-217 1-188 (222)
25 3unf_N Proteasome subunit beta 100.0 6.1E-44 2.1E-48 289.4 24.3 189 16-220 1-190 (199)
26 1yar_A Proteasome alpha subuni 100.0 3.5E-44 1.2E-48 297.6 23.3 186 12-213 31-220 (233)
27 1ryp_E 20S proteasome; multica 100.0 3.5E-44 1.2E-48 299.2 23.4 187 12-213 23-219 (242)
28 1iru_B 20S proteasome; cell cy 100.0 3.7E-44 1.2E-48 297.5 22.2 188 12-215 28-219 (233)
29 1ryp_D 20S proteasome; multica 100.0 1.5E-43 5E-48 295.3 24.7 190 11-213 24-218 (241)
30 1iru_I 20S proteasome; cell cy 100.0 1.9E-43 6.6E-48 293.4 24.8 186 16-216 1-186 (234)
31 1iru_E 20S proteasome; cell cy 100.0 7.9E-44 2.7E-48 296.9 22.0 186 12-213 31-225 (241)
32 1iru_G 20S proteasome; cell cy 100.0 9E-44 3.1E-48 298.7 21.3 186 12-211 30-219 (254)
33 1ryp_G 20S proteasome; multica 100.0 2.1E-43 7E-48 294.9 22.8 193 12-216 27-226 (244)
34 1q5r_H Proteasome beta-type su 100.0 4E-43 1.4E-47 299.9 25.1 192 11-215 61-269 (294)
35 1q5q_H Proteasome beta-type su 100.0 7.3E-43 2.5E-47 290.1 25.2 187 16-215 1-204 (235)
36 3h4p_A Proteasome subunit alph 100.0 1.5E-43 5.2E-48 298.7 19.3 192 11-219 34-229 (264)
37 3nzj_F Proteasome component C1 100.0 3.3E-43 1.1E-47 299.6 21.2 188 11-210 30-221 (288)
38 1iru_D 20S proteasome; cell cy 100.0 4.1E-43 1.4E-47 293.8 21.1 186 11-213 25-216 (248)
39 1ryp_F 20S proteasome; multica 100.0 8.7E-43 3E-47 289.3 21.5 186 11-212 27-219 (233)
40 1iru_F 20S proteasome; cell cy 100.0 9.9E-43 3.4E-47 293.8 21.1 186 12-212 29-219 (263)
41 1j2p_A Alpha-ring, proteasome 100.0 5.6E-42 1.9E-46 286.6 24.6 186 12-214 31-222 (246)
42 2jay_A Proteasome; hydrolase; 100.0 1.6E-42 5.6E-47 295.8 21.1 191 12-215 54-261 (291)
43 1ryp_B 20S proteasome; multica 100.0 3.7E-42 1.3E-46 288.3 22.4 186 12-212 28-218 (250)
44 3mi0_A Proteasome subunit alph 100.0 7.6E-42 2.6E-46 285.7 23.1 181 11-213 23-218 (248)
45 1q5q_A Proteasome alpha-type s 100.0 4.6E-41 1.6E-45 282.9 21.2 180 11-212 23-215 (259)
46 2z3b_A ATP-dependent protease 100.0 2E-36 6.7E-41 241.8 18.1 169 13-208 3-179 (180)
47 1m4y_A ATP-dependent protease 100.0 1.5E-35 5.2E-40 234.7 18.5 167 16-208 1-171 (171)
48 1g3k_A ATP-dependent protease 100.0 1.6E-35 5.4E-40 235.3 18.6 168 16-209 1-173 (174)
49 3fpw_A HBPS, extracellular HAE 55.5 35 0.0012 26.5 6.6 38 174-215 63-100 (192)
50 2a2l_A Unknown; structural gen 45.8 33 0.0011 25.2 4.9 38 174-215 10-47 (145)
51 3kol_A Oxidoreductase, glyoxal 21.5 1.2E+02 0.0042 20.7 4.5 16 125-140 134-149 (156)
No 1
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=2.3e-52 Score=342.44 Aligned_cols=213 Identities=48% Similarity=0.821 Sum_probs=201.6
Q ss_pred CcCccCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcC
Q 027437 7 AWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN 86 (223)
Q Consensus 7 ~~~~~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 86 (223)
.|+|++++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||+.+|++.|.++++.+++.|++.++
T Consensus 1 ~~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 80 (213)
T 1iru_M 1 RFSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNN 80 (213)
T ss_dssp CCCSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 48999999999999999999999999999999888888999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCC
Q 027437 87 KQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 87 ~~~~~~~la~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~ 166 (223)
++++++.+++.+++++|++|++||++++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+.+++++..
T Consensus 81 ~~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~- 159 (213)
T 1iru_M 81 KAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQ- 159 (213)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCS-
T ss_pred CCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhcccccccc-
Confidence 9999999999999999998899999999999999877899999999999999999999999999999999997642111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEEeeecCCC
Q 027437 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREYMELRKD 223 (223)
Q Consensus 167 ~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~~~~ 223 (223)
+.|.++||++||++++++||..+.++|..++++++|++|+++|++.+.+++|||
T Consensus 160 ---~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d 213 (213)
T 1iru_M 160 ---NVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRKD 213 (213)
T ss_dssp ---SCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEEEEECCCC
T ss_pred ---ccCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEEEEeecCCC
Confidence 336789999999999999999999999999999999999999999999999998
No 2
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=1.7e-51 Score=339.41 Aligned_cols=217 Identities=43% Similarity=0.719 Sum_probs=202.2
Q ss_pred CcCccCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcC
Q 027437 7 AWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN 86 (223)
Q Consensus 7 ~~~~~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 86 (223)
.|+|++++|+|+|||+++||||||+|+|.+.|.++..++.+||++|++++++++||+.+|++.|.++++.+++.|++.++
T Consensus 1 ~~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 80 (222)
T 1ryp_M 1 QFNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHN 80 (222)
T ss_dssp CCCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCccccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcC
Confidence 48999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred -CCCCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCC
Q 027437 87 -KQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (223)
Q Consensus 87 -~~~~~~~la~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (223)
++++++.+++.+++++|.+|++||++++||||||++++|+||.+||+|++.+++++|+|+|+.+++++||+.+++++..
T Consensus 81 ~~~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~ 160 (222)
T 1ryp_M 81 DKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQY 160 (222)
T ss_dssp TCCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCB
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccccccccc
Confidence 9999999999999999998889999999999999878899999999999999999999999999999999987532111
Q ss_pred C----CCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEEeeecCCC
Q 027437 166 L----LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREYMELRKD 223 (223)
Q Consensus 166 ~----~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~~~~ 223 (223)
. -.+..|.++||++||++++++||..+.++|..++++++|++|+++|++++.+++|||
T Consensus 161 ~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~~~r~d 222 (222)
T 1ryp_M 161 EPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD 222 (222)
T ss_dssp CTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEECCCC
T ss_pred ccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCeEEEEeeccCC
Confidence 0 011237789999999999999999999999999999999999999999999999998
No 3
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=4.4e-50 Score=327.03 Aligned_cols=203 Identities=23% Similarity=0.398 Sum_probs=194.0
Q ss_pred cCccCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCC
Q 027437 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNK 87 (223)
Q Consensus 8 ~~~~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 87 (223)
++|++.+|||+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||+.+|++.|.++++.+++.|++.+++
T Consensus 1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (205)
T 1iru_J 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGR 80 (205)
T ss_dssp -CCTTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCcccCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 58999999999999999999999999999998888889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcC-CCceEEEEEcCCCceeee-CeEEEcCChhhHHHHHhcccCCCCCC
Q 027437 88 QMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDN-EGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPL 165 (223)
Q Consensus 88 ~~~~~~la~~l~~~~~~~r~~P~~v~~llaG~d~-~~~~~Ly~id~~G~~~~~-~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (223)
+++++.+++.+++++|++|..||++++|+||||+ +++|+||.+||+|++.++ +|+|+|+|+++++++||+.|+
T Consensus 81 ~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~----- 155 (205)
T 1iru_J 81 QIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWE----- 155 (205)
T ss_dssp CCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCC-----
T ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccC-----
Confidence 9999999999999999988889999999999996 567999999999999665 579999999999999999976
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEEeeecCCC
Q 027437 166 LLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREYMELRKD 223 (223)
Q Consensus 166 ~~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~~~~ 223 (223)
++||++||++++++||..+.++|..++++++|++|+++|++++.+++|||
T Consensus 156 --------~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d 205 (205)
T 1iru_J 156 --------PNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD 205 (205)
T ss_dssp --------SSCCHHHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEEEEBCCCCC
T ss_pred --------CCCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEEEEeecCCC
Confidence 69999999999999999999999999999999999999999999999998
No 4
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=3.1e-49 Score=321.78 Aligned_cols=202 Identities=22% Similarity=0.464 Sum_probs=193.2
Q ss_pred cCccCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCC
Q 027437 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNK 87 (223)
Q Consensus 8 ~~~~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 87 (223)
.+|++.+|||+|||+++||||||+|+|.+.|.++..++.+||++|+ ++++++||+.+|++.|.++++.+++.|++.+++
T Consensus 1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 79 (204)
T 1ryp_J 1 SDPSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEER 79 (204)
T ss_dssp CCGGGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCcCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3799999999999999999999999999999888888999999999 999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcC-CCceEEEEEcCCCceeee-CeEEEcCChhhHHHHHhcccCCCCCC
Q 027437 88 QMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDN-EGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPL 165 (223)
Q Consensus 88 ~~~~~~la~~l~~~~~~~r~~P~~v~~llaG~d~-~~~~~Ly~id~~G~~~~~-~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (223)
+++++.+++.+++.+|++|..||++++|+||||+ +++|+||.+||+|++.++ +|+|+|+|+++++++||+.|+
T Consensus 80 ~~~v~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~----- 154 (204)
T 1ryp_J 80 AIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYE----- 154 (204)
T ss_dssp CCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCC-----
T ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcC-----
Confidence 9999999999999999988779999999999996 577999999999999665 589999999999999999976
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEEeeecCCC
Q 027437 166 LLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREYMELRKD 223 (223)
Q Consensus 166 ~~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~~~~ 223 (223)
++||++||++++++||..+.++|..++++++|++|+++|++++.+++|||
T Consensus 155 --------~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d 204 (204)
T 1ryp_J 155 --------PNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLKMRQD 204 (204)
T ss_dssp --------SSCCHHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEEEEECCCCC
T ss_pred --------CCcCHHHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEEEEeecCCC
Confidence 69999999999999999999999999999999999999999999999998
No 5
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=6e-48 Score=317.15 Aligned_cols=193 Identities=26% Similarity=0.421 Sum_probs=178.3
Q ss_pred cCccCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCC
Q 027437 8 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNK 87 (223)
Q Consensus 8 ~~~~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 87 (223)
|+|++++|||+|||+++||||||+|+|.+.|.++..++.+||++|++++++++||+.+|++.|.++++.+++.|++.+++
T Consensus 1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (217)
T 1yar_H 1 MNQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRV 80 (217)
T ss_dssp --------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 78999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCC
Q 027437 88 QMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 88 ~~~~~~la~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~ 167 (223)
+++++.+++.+++.+|.+|.|||++++|+|||| ++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 81 ~~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~------- 151 (217)
T 1yar_H 81 NMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID--TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYS------- 151 (217)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEES--SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCC-------
T ss_pred CCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEC--CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcc-------
Confidence 999999999999999998899999999999999 45999999999999999999999999999999999976
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcC-CCeEE
Q 027437 168 PAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNK-DGIHR 215 (223)
Q Consensus 168 ~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~-~g~~~ 215 (223)
++||++||++++++||..+.++|..++++++|++|++ +|+++
T Consensus 152 ------~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~ 194 (217)
T 1yar_H 152 ------EKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQ 194 (217)
T ss_dssp ------TTCCHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEE
T ss_pred ------cCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEE
Confidence 6999999999999999999999998999999999999 77654
No 6
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=8.5e-47 Score=310.72 Aligned_cols=189 Identities=27% Similarity=0.438 Sum_probs=181.3
Q ss_pred CCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027437 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (223)
Q Consensus 15 gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
|||+|||+++||||||+|+|.+.|.++..++.+||++|++||+|++||+.+|++.|.++++.+++.|++.++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 79999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeC-eEEEcCChhhHHHHHhcccCCCCCCCCCCCCCC
Q 027437 95 GQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 173 (223)
Q Consensus 95 a~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~-~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~~~ 173 (223)
++.+++++|.+|.+||++++||||||++++|+||.+||+|++.+++ ++|+|+|+++++++||+.|+
T Consensus 81 a~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~------------- 147 (219)
T 3h4p_a 81 ATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYD------------- 147 (219)
T ss_dssp HHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCC-------------
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcC-------------
Confidence 9999999998888999999999999986779999999999999999 99999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEE
Q 027437 174 TPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHRE 216 (223)
Q Consensus 174 ~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~ 216 (223)
++||++||++++++||..+.++|..++++++|++|+++|+++.
T Consensus 148 ~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~g~~~l 190 (219)
T 3h4p_a 148 RDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGVKIF 190 (219)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTSCSSCCSCCCEEEEETTEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCeEEc
Confidence 6999999999999999999999999999999999999987654
No 7
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=7.4e-46 Score=301.41 Aligned_cols=186 Identities=26% Similarity=0.423 Sum_probs=179.0
Q ss_pred CeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027437 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.+.|.++..++.+||++|++|+++++||+.+|++.|.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeC-eEEEcCChhhHHHHHhcccCCCCCCCCCCCCCCC
Q 027437 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVT 174 (223)
Q Consensus 96 ~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~-~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~~~~ 174 (223)
+.+++++|.+|.|||++++|+||||+ ++|+||.+||+|++.+++ ++|+|+|+++++++||+.|+ +
T Consensus 81 ~~l~~~~~~~r~rp~~~~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~-------------~ 146 (202)
T 1j2q_H 81 TLTSNLLNSYRYFPYLVQLLIGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFT-------------P 146 (202)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEEEEET-TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCC-------------T
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeC-CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcC-------------C
Confidence 99999999988899999999999997 459999999999999999 99999999999999999976 6
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEE
Q 027437 175 PLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHR 215 (223)
Q Consensus 175 ~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~ 215 (223)
+||++||++++++||..+.++|..++++++|++|+++|++.
T Consensus 147 ~~s~eea~~la~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 187 (202)
T 1j2q_H 147 EIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQ 187 (202)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCTTSCSCEEEEEECSSCEEE
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCeEE
Confidence 99999999999999999999999899999999999998654
No 8
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=2.4e-46 Score=316.30 Aligned_cols=202 Identities=15% Similarity=0.240 Sum_probs=188.0
Q ss_pred CCCCCCcCccCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHH
Q 027437 2 TKQHPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIY 81 (223)
Q Consensus 2 ~~~~~~~~~~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 81 (223)
+|+.++|.|+. +|||+|||+++||||||+|+|.+.|.++..++.+||++|+++|+|++||+.+|++.|.++++.+++.|
T Consensus 29 ~~~~~~~~av~-~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~ 107 (266)
T 1g0u_M 29 SPMVNTQQPIV-TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTEN 107 (266)
T ss_dssp -----CCCCCE-EECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhccCcc-cCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHh
Confidence 46788999988 69999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred HH-----hcCCCCCHHHHHHHHHHHHHhhc--CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHH
Q 027437 82 QH-----QHNKQMSCPAMGQLLSNTLYYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPF 154 (223)
Q Consensus 82 ~~-----~~~~~~~~~~la~~l~~~~~~~r--~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~ 154 (223)
++ .++++++++.+++.+++++|++| ++||++++||||||++++|+||.+||+|++.+++++|+|+|+++++++
T Consensus 108 ~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~ 187 (266)
T 1g0u_M 108 AYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPL 187 (266)
T ss_dssp HTTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHH
T ss_pred hhccchhhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHH
Confidence 98 89999999999999999999877 799999999999998767999999999999999999999999999999
Q ss_pred HhcccCCCCCCCCCCCCCCC-----CCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCC-CeEEEe
Q 027437 155 LDNQLKSPSPLLLPAQDAVT-----PLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKD-GIHREY 217 (223)
Q Consensus 155 Le~~~~~~~~~~~~~~~~~~-----~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~-g~~~~~ 217 (223)
||+.|+ + +||++||++++++||..+.++|..++++++|++|+++ |++...
T Consensus 188 Le~~~~-------------~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~~ 243 (266)
T 1g0u_M 188 LRKVVD-------------RESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKK 243 (266)
T ss_dssp HTTTCS-------------SGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEE
T ss_pred HHHhhc-------------ccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEcC
Confidence 999976 5 8999999999999999999999999999999999999 876543
No 9
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=5e-46 Score=301.44 Aligned_cols=190 Identities=21% Similarity=0.336 Sum_probs=180.2
Q ss_pred CCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027437 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (223)
Q Consensus 15 gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
|||+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||+.+|++.|.++++.+++.|++.++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (198)
T 1ryp_K 1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAV 80 (198)
T ss_dssp CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 79999999999999999999999988888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc-C-CCeeEEEEEEEEcC-CCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCCCCC
Q 027437 95 GQLLSNTLYYKR-F-FPYYSFNVLGGLDN-EGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQD 171 (223)
Q Consensus 95 a~~l~~~~~~~r-~-~P~~v~~llaG~d~-~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~ 171 (223)
++.+++.+|.++ . +||++++|+||||+ +++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 81 a~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~----------- 149 (198)
T 1ryp_K 81 SSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYR----------- 149 (198)
T ss_dssp HHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCC-----------
T ss_pred HHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcC-----------
Confidence 999999998764 3 59999999999997 577999999999999999999999999999999999976
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEEe
Q 027437 172 AVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREY 217 (223)
Q Consensus 172 ~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~~ 217 (223)
++||++||++++++||..+.++|..++++++|++|+++|++...
T Consensus 150 --~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~ 193 (198)
T 1ryp_K 150 --PDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVD 193 (198)
T ss_dssp --TTCCHHHHHHHHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEEC
T ss_pred --CCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEcCCCEEEec
Confidence 69999999999999999999999999999999999999976543
No 10
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=8.9e-46 Score=301.62 Aligned_cols=194 Identities=26% Similarity=0.367 Sum_probs=184.2
Q ss_pred ccCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCC
Q 027437 10 PYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQM 89 (223)
Q Consensus 10 ~~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 89 (223)
..+++|||+|||+++||||||+|+|.+.|.++..++.+||++|++|+++++||+.+|++.|.++++.+++.|++.+++ +
T Consensus 4 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-~ 82 (205)
T 1ryp_H 4 GEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-P 82 (205)
T ss_dssp TCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-C
T ss_pred CCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-C
Confidence 356689999999999999999999999998888899999999999999999999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCCC
Q 027437 90 SCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPA 169 (223)
Q Consensus 90 ~~~~la~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~ 169 (223)
+++.+++.+++++|.+|.+ |++++|+||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 83 ~v~~la~~l~~~~~~~~~~-~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~--------- 152 (205)
T 1ryp_H 83 STETAASVFKELCYENKDN-LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFR--------- 152 (205)
T ss_dssp CHHHHHHHHHHHHHHTTTT-CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCC---------
T ss_pred CHHHHHHHHHHHHHhhhcC-ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccC---------
Confidence 9999999999999988755 999999999998677999999999999999999999999999999999976
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEEee
Q 027437 170 QDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREYM 218 (223)
Q Consensus 170 ~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~~~ 218 (223)
++||++||++++++||..+.++|..++++++|++|+++|++.+.+
T Consensus 153 ----~~~s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~~~ 197 (205)
T 1ryp_H 153 ----ENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIF 197 (205)
T ss_dssp ----TTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEE
T ss_pred ----CCCCHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEEEe
Confidence 699999999999999999999999999999999999999887665
No 11
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=5e-46 Score=308.75 Aligned_cols=193 Identities=16% Similarity=0.243 Sum_probs=183.7
Q ss_pred CCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHH-----hcC
Q 027437 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQH-----QHN 86 (223)
Q Consensus 12 ~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-----~~~ 86 (223)
+++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||+.+|++.|.++++.+++.|++ .++
T Consensus 5 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (233)
T 1ryp_N 5 IVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAE 84 (233)
T ss_dssp CEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTT
T ss_pred ccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhhcC
Confidence 457999999999999999999999999899999999999999999999999999999999999999999999 899
Q ss_pred CCCCHHHHHHHHHHHHHhhc--CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCC
Q 027437 87 KQMSCPAMGQLLSNTLYYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSP 164 (223)
Q Consensus 87 ~~~~~~~la~~l~~~~~~~r--~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~ 164 (223)
++++++.+++.+++++|++| ++||++++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 85 ~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~---- 160 (233)
T 1ryp_N 85 EALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVD---- 160 (233)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCS----
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhc----
Confidence 99999999999999999877 789999999999998767999999999999999999999999999999999976
Q ss_pred CCCCCCCCCC-----CCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCC-CeEEEe
Q 027437 165 LLLPAQDAVT-----PLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKD-GIHREY 217 (223)
Q Consensus 165 ~~~~~~~~~~-----~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~-g~~~~~ 217 (223)
+ +||++||++++++||..+.++|..++++++|++|+++ |++...
T Consensus 161 ---------~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~~ 210 (233)
T 1ryp_N 161 ---------RESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKK 210 (233)
T ss_dssp ---------SGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEE
T ss_pred ---------cccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEcC
Confidence 5 8999999999999999999999999999999999999 876543
No 12
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=6.3e-46 Score=305.39 Aligned_cols=194 Identities=24% Similarity=0.312 Sum_probs=182.9
Q ss_pred CCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHH-hcCCCCC
Q 027437 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQH-QHNKQMS 90 (223)
Q Consensus 12 ~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~~~~ 90 (223)
+++|||+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||+.+|++.|.++++.+++.|++ .++++++
T Consensus 5 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (219)
T 1iru_N 5 MVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYS 84 (219)
T ss_dssp CSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCCCC
T ss_pred ccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 457999999999999999999999999899999999999999999999999999999999999999999998 9999999
Q ss_pred HHHHHHHHHHHHHhhc--CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCC
Q 027437 91 CPAMGQLLSNTLYYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLP 168 (223)
Q Consensus 91 ~~~la~~l~~~~~~~r--~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~ 168 (223)
++.+++.+++.+|++| ++||++++|+||+|+. +|+||.+||+|++.+++++++|+|+++++++||+.|++
T Consensus 85 v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~-gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~------- 156 (219)
T 1iru_N 85 PRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADG-ESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEK------- 156 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETT-EEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTS-------
T ss_pred HHHHHHHHHHHHHHhcccCCCceEEEEEEEEECC-CCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCC-------
Confidence 9999999999999877 8999999999999964 79999999999999999999999999999999999862
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEEe
Q 027437 169 AQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREY 217 (223)
Q Consensus 169 ~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~~ 217 (223)
.++||++||++++++||..+.++|..++++++|++|+++|++...
T Consensus 157 ----~~~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~ 201 (219)
T 1iru_N 157 ----QPVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEG 201 (219)
T ss_dssp ----CSCCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEE
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEEEcC
Confidence 129999999999999999999999999999999999999976543
No 13
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=1.7e-45 Score=299.98 Aligned_cols=191 Identities=22% Similarity=0.292 Sum_probs=182.3
Q ss_pred CeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027437 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.+.|.++..++.+||++|++|+++++||+.+|++.|.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027437 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+.+++++|.+|. ||++++|+||||++++|+||.+||+|++.+++++++|+|+++++++||+.|+ ++
T Consensus 81 ~~l~~~~~~~~~-p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~-------------~~ 146 (205)
T 1iru_H 81 SLFKEMCYRYRE-DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYR-------------EG 146 (205)
T ss_dssp HHHHHHHHHTTT-TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCC-------------TT
T ss_pred HHHHHHHHhcCc-CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcC-------------CC
Confidence 999999998775 9999999999998677999999999999999999999999999999999976 69
Q ss_pred CCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEEeeec
Q 027437 176 LSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREYMEL 220 (223)
Q Consensus 176 ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~ 220 (223)
||++||++++++||..+.++|..++++++|++|+++|++++.++.
T Consensus 147 ~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~ 191 (205)
T 1iru_H 147 MTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLG 191 (205)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECG
T ss_pred CCHHHHHHHHHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeCh
Confidence 999999999999999999999999999999999999987776654
No 14
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=1.9e-45 Score=313.30 Aligned_cols=194 Identities=22% Similarity=0.247 Sum_probs=182.4
Q ss_pred cCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027437 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+++|||+|||+++||||||+|+|.+.|.++..++.+||++|++++++++||+.+|++.|.++++.+++.|++.++++++
T Consensus 71 ~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~is 150 (287)
T 3nzj_K 71 KIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERIS 150 (287)
T ss_dssp -----CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred heccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCCCC
Q 027437 91 CPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQ 170 (223)
Q Consensus 91 ~~~la~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~ 170 (223)
++.+++.+++++|.+|.+||++++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 151 v~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~---------- 220 (287)
T 3nzj_K 151 VAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYK---------- 220 (287)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCC----------
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhc----------
Confidence 9999999999999988789999999999997778999999999999999999999999999999999976
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEEe
Q 027437 171 DAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREY 217 (223)
Q Consensus 171 ~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~~ 217 (223)
++||++||++++++||..+.++|..++++++|++|+++|+++..
T Consensus 221 ---~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~l~ 264 (287)
T 3nzj_K 221 ---WDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHG 264 (287)
T ss_dssp ---TTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEE
T ss_pred ---CCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCCEEEeC
Confidence 69999999999999999999999999999999999999976653
No 15
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=2.3e-45 Score=298.23 Aligned_cols=190 Identities=21% Similarity=0.378 Sum_probs=179.4
Q ss_pred CCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027437 15 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (223)
Q Consensus 15 gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
|||+|||+++||||||+|+|.+.|.++..++.+||++|++|+++++||+.+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~ 80 (201)
T 1iru_K 1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAA 80 (201)
T ss_dssp CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 79999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-Hhhc-CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCCCCCC
Q 027437 95 GQLLSNTL-YYKR-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA 172 (223)
Q Consensus 95 a~~l~~~~-~~~r-~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~~ 172 (223)
++++++.+ +..+ .+||++++|+||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 81 a~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~------------ 148 (201)
T 1iru_K 81 ANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYT------------ 148 (201)
T ss_dssp HHHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhccc------------
Confidence 99998766 5433 469999999999998677999999999999999999999999999999999975
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEEe
Q 027437 173 VTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREY 217 (223)
Q Consensus 173 ~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~~ 217 (223)
++||++||++++++||..+.++|..++++++|++|+++|++...
T Consensus 149 -~~~s~eea~~l~~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~ 192 (201)
T 1iru_K 149 -PTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLD 192 (201)
T ss_dssp -TTCCHHHHHHHHHHHHHHHHHTBCBCCCCEEEEEEETTEEECCC
T ss_pred -CCCCHHHHHHHHHHHHHHHHhhccccCCceEEEEEcCCCeEEee
Confidence 69999999999999999999999999999999999999987654
No 16
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=1.6e-45 Score=307.46 Aligned_cols=196 Identities=20% Similarity=0.252 Sum_probs=179.5
Q ss_pred cCCC-CCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCC
Q 027437 11 YDNN-GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQM 89 (223)
Q Consensus 11 ~~~~-gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 89 (223)
.+++ |+|+|||+++||||||+|+|.+ +.++..++.+||++|++|++|++||+.+|++.|.++++.+++.|++.+++++
T Consensus 25 av~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~ 103 (243)
T 1ryp_A 25 ATNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDM 103 (243)
T ss_dssp HTTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 4678 9999999999999999999999 6678888999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCC
Q 027437 90 SCPAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (223)
Q Consensus 90 ~~~~la~~l~~~~--~~~r--~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (223)
+++.+++.+++++ |++| +|||+|++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+++..
T Consensus 104 ~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~~- 182 (243)
T 1ryp_A 104 PCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKI- 182 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHHCS-
T ss_pred CHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEECCCcHHHHHHHHHHhhhccc-
Confidence 9999999999999 7777 7999999999999976779999999999999999999999999999999999762000
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeE
Q 027437 166 LLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIH 214 (223)
Q Consensus 166 ~~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~ 214 (223)
...++||++||++++++||..+.++| .++++++|++|+++|.+
T Consensus 183 -----~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~g~~ 225 (243)
T 1ryp_A 183 -----DHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDKFF 225 (243)
T ss_dssp -----SSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTEEE
T ss_pred -----ccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCeE
Confidence 00119999999999999999999999 68999999999999943
No 17
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=5.6e-45 Score=298.37 Aligned_cols=188 Identities=21% Similarity=0.258 Sum_probs=180.3
Q ss_pred CeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027437 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.+.|.++..++.+||++|++|+++++||+.+|++.|.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027437 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+.+++++|.++..||++++|+||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+ ++
T Consensus 81 ~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~-------------~~ 147 (212)
T 1ryp_L 81 KILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYK-------------WD 147 (212)
T ss_dssp HHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCC-------------TT
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCC-------------CC
Confidence 99999999888779999999999997667999999999999999999999999999999999976 69
Q ss_pred CCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEE
Q 027437 176 LSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHRE 216 (223)
Q Consensus 176 ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~ 216 (223)
||++||++++++||..+.++|..++++++|++|+++|+++.
T Consensus 148 ~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~g~~~~ 188 (212)
T 1ryp_L 148 LSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYH 188 (212)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCceEEE
Confidence 99999999999999999999999999999999999996654
No 18
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=8.4e-45 Score=295.58 Aligned_cols=187 Identities=26% Similarity=0.306 Sum_probs=179.1
Q ss_pred CeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027437 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.+.|.++..++.+||++|++|+++++||+.+|++.|.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027437 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+.+++++|.+|.+||++++|+||||+ ++|+||.+||+|++.++++.|+|+|+++++++||+.|+ ++
T Consensus 81 ~~l~~~~~~~r~~~~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~-------------~~ 146 (204)
T 1iru_L 81 KLLANMVYQYKGMGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYS-------------YD 146 (204)
T ss_dssp HHHHHHHHTTTTSCCCBEEEEEEECS-SSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCC-------------TT
T ss_pred HHHHHHHHHhCCCCeeEEEEEEEEeC-CCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCC-------------CC
Confidence 99999999988889999999999996 55999999999999999999999999999999999976 69
Q ss_pred CCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEE
Q 027437 176 LSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHRE 216 (223)
Q Consensus 176 ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~ 216 (223)
||++||++++++||..+.++|..++++++|++|+++|++..
T Consensus 147 ~s~eea~~l~~~al~~~~~rd~~s~~~i~v~vi~~~g~~~l 187 (204)
T 1iru_L 147 LEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRV 187 (204)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEECSSCEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEeCCceEEe
Confidence 99999999999999999999998999999999999996643
No 19
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=1.3e-44 Score=300.27 Aligned_cols=187 Identities=19% Similarity=0.292 Sum_probs=178.4
Q ss_pred CeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027437 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.+.|.++..++.+||++|++||+|++||+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 79999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027437 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+.+++.+|.++ +||++++||||||++ +|+||.+||+|++.+++++|+|+|+++++++||+.|+ ++
T Consensus 81 ~~l~~~l~~~~-~p~~v~llvaG~D~~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~-------------~~ 145 (234)
T 3unf_H 81 RILRQTLFRYQ-GHVGASLVVGGVDLN-GPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQ-------------PN 145 (234)
T ss_dssp HHHHHHHHHTT-TCSCEEEEEEEEETT-EEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCC-------------SS
T ss_pred HHHHHHHHhcC-CCccEEEEEEEEeCC-CCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccC-------------CC
Confidence 99999998754 699999999999975 5999999999999999999999999999999999975 69
Q ss_pred CCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEEe
Q 027437 176 LSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREY 217 (223)
Q Consensus 176 ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~~ 217 (223)
||++||++++++||..+.++|..++++++|++|+++|++...
T Consensus 146 ms~eeA~~la~~al~~~~~~D~~sg~~iev~vi~~dg~~~l~ 187 (234)
T 3unf_H 146 MTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGGAKLQR 187 (234)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEESSCEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEECCCEEEeC
Confidence 999999999999999999999999999999999999987654
No 20
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=1.3e-44 Score=304.43 Aligned_cols=189 Identities=22% Similarity=0.299 Sum_probs=175.6
Q ss_pred CccCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCC
Q 027437 9 SPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQ 88 (223)
Q Consensus 9 ~~~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 88 (223)
..++++|||+|||+++||||||+|+|.+.|.++..++.+||++|++||+|++||+.+|++.|.++++.+++.|++.++++
T Consensus 23 ~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~ 102 (261)
T 3nzj_H 23 PKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSRE 102 (261)
T ss_dssp -------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCC
Q 027437 89 MSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLP 168 (223)
Q Consensus 89 ~~~~~la~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~ 168 (223)
++++.+++.+++.+|.++ +||++++||||||++ +|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 103 ~~v~~~a~~l~~~l~~~~-~~~gv~llvaG~D~~-Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~-------- 172 (261)
T 3nzj_H 103 PRVVSALQMLKQHLFKYQ-GHIGAYLIVAGVDPT-GSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWK-------- 172 (261)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCSCEEEEEEEEETT-EEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCC--------
T ss_pred CCHHHHHHHHHHHHHHhc-CcccEEEEEEEEeCC-CCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhc--------
Confidence 999999999999998654 699999999999975 5999999999999999999999999999999999975
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCC
Q 027437 169 AQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDG 212 (223)
Q Consensus 169 ~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g 212 (223)
++||++||++++++||..+.++|..++++++|++|+++|
T Consensus 173 -----~~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg 211 (261)
T 3nzj_H 173 -----QDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGK 211 (261)
T ss_dssp -----SSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTS
T ss_pred -----cCCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCC
Confidence 699999999999999999999999999999999999999
No 21
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=5.9e-45 Score=304.61 Aligned_cols=195 Identities=18% Similarity=0.272 Sum_probs=180.0
Q ss_pred CCC-CCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027437 12 DNN-GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 12 ~~~-gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
+++ |+|+|||+++||||||+|+|.+ +.++..++.+||++|++++++++||+.+|++.|.++++.+++.|++.++++++
T Consensus 32 v~~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 110 (246)
T 1iru_A 32 INQGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIP 110 (246)
T ss_dssp HHTTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HhcCCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 345 9999999999999999999998 56788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--Hhhc--CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCC
Q 027437 91 CPAMGQLLSNTL--YYKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~--~~~r--~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~ 166 (223)
++.+++.+++++ |+++ +|||++++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|++
T Consensus 111 ~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~----- 185 (246)
T 1iru_A 111 VDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKK----- 185 (246)
T ss_dssp HHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHTTS-----
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeEEEECCCcHHHHHHHHHhhcc-----
Confidence 999999999986 6655 7899999999999986779999999999999999999999999999999999751
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEEeee
Q 027437 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREYME 219 (223)
Q Consensus 167 ~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~ 219 (223)
.++|+++||++++++||..+.++| .++++++|++|+++|+.++.++
T Consensus 186 ------~~~ms~eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g~~~~~l~ 231 (246)
T 1iru_A 186 ------KFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFRILT 231 (246)
T ss_dssp ------CCCCCHHHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEEEEEECC
T ss_pred ------cCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCeEEECC
Confidence 129999999999999999999999 7899999999999998655553
No 22
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=1.6e-44 Score=301.59 Aligned_cols=190 Identities=20% Similarity=0.256 Sum_probs=178.1
Q ss_pred CCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027437 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|||+|||+++||||||+|+|.+.|..+..++.+||++|++||++++||+.+|++.|.++++.+++.|++.+++++++
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 107 (244)
T 1ryp_C 28 ISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPV 107 (244)
T ss_dssp HTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 67899999999999999999999999976668899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh----cCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCC
Q 027437 92 PAMGQLLSNTLYYK----RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 92 ~~la~~l~~~~~~~----r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~ 167 (223)
+.+++.++++++.. +.|||++++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 108 ~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~------- 180 (244)
T 1ryp_C 108 EILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYK------- 180 (244)
T ss_dssp HHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEEECCCcHHHHHHHHHhhh-------
Confidence 99999999999543 3789999999999996677999999999999999999999999999999999975
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEc--CCCeE
Q 027437 168 PAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLN--KDGIH 214 (223)
Q Consensus 168 ~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~--~~g~~ 214 (223)
++||++||++++++||..+.++|..++++++|++|+ ++|..
T Consensus 181 ------~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~ 223 (244)
T 1ryp_C 181 ------DDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGE 223 (244)
T ss_dssp ------TTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSS
T ss_pred ------cCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCc
Confidence 699999999999999999999965679999999999 99864
No 23
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=1.2e-44 Score=305.24 Aligned_cols=189 Identities=20% Similarity=0.213 Sum_probs=180.1
Q ss_pred CCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027437 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|||+|||+++||||||+|+|.+.|.++..++.+||++|++||++++||+.+|++.|.++++.+++.|++.+++++++
T Consensus 28 v~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 107 (261)
T 1iru_C 28 IGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPC 107 (261)
T ss_dssp HTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 67899999999999999999999999988877779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc----CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCC
Q 027437 92 PAMGQLLSNTLYYKR----FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 92 ~~la~~l~~~~~~~r----~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~ 167 (223)
+.+++.++++++.++ .|||++++||||||++++|+||.+||+|++.+++++|+|+|+.+++++||+.|+
T Consensus 108 ~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~------- 180 (261)
T 1iru_C 108 EQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK------- 180 (261)
T ss_dssp HHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeEEeCcccHHHHHHHHHhhc-------
Confidence 999999999997654 789999999999997677999999999999999999999999999999999965
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCe
Q 027437 168 PAQDAVT-PLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGI 213 (223)
Q Consensus 168 ~~~~~~~-~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~ 213 (223)
+ +||++||++++++||..+.++|..++++++|++|+++|.
T Consensus 181 ------~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~ 221 (261)
T 1iru_C 181 ------EGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENG 221 (261)
T ss_dssp ------TTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSS
T ss_pred ------cCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCC
Confidence 7 999999999999999999999999999999999999985
No 24
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=6.1e-44 Score=294.23 Aligned_cols=187 Identities=21% Similarity=0.278 Sum_probs=178.1
Q ss_pred CeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027437 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.+.|.++..++.+||++|++|+++++||+.+|++.|.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027437 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+.+++.+|.++ +||++++|+||+|+ ++|+||.+||+|++.+++++|+|+|+++++++||+.|+ ++
T Consensus 81 ~~l~~~l~~~~-~p~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~-------------~~ 145 (222)
T 1ryp_I 81 QMLKQHLFKYQ-GHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWK-------------QD 145 (222)
T ss_dssp HHHHHHHHHTT-TCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCC-------------SS
T ss_pred HHHHHHHhhcC-CCCCeeEEEEEEeC-CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCC-------------CC
Confidence 99999998765 79999999999997 45999999999999999999999999999999999976 69
Q ss_pred CCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCC-eEEEe
Q 027437 176 LSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDG-IHREY 217 (223)
Q Consensus 176 ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g-~~~~~ 217 (223)
||++||++++++||..++++|..++++++|++|+++| ++..+
T Consensus 146 ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~ 188 (222)
T 1ryp_I 146 LTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLR 188 (222)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEE
T ss_pred cCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEECCCCEEEEe
Confidence 9999999999999999999999899999999999999 77543
No 25
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=6.1e-44 Score=289.40 Aligned_cols=189 Identities=21% Similarity=0.290 Sum_probs=177.9
Q ss_pred CeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027437 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.+.|.++..++.+||++|++|+++++||+.+|++.|.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeC-eEEEcCChhhHHHHHhcccCCCCCCCCCCCCCCC
Q 027437 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVT 174 (223)
Q Consensus 96 ~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~-~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~~~~ 174 (223)
+.+++.+|.+| +||++++||||||++++|+||. |+|++.++. ++++|+|+++++++||+.|+ +
T Consensus 81 ~~l~~~l~~~~-~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~-------------~ 144 (199)
T 3unf_N 81 NVVKNISYKYR-EDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYK-------------P 144 (199)
T ss_dssp HHHHHHHHHTT-TTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCC-------------S
T ss_pred HHHHHHHHhcC-CCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcC-------------C
Confidence 99999998765 6999999999999877799999 999976655 77789999999999999975 6
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEEeeec
Q 027437 175 PLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREYMEL 220 (223)
Q Consensus 175 ~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~~ 220 (223)
+||++||++++++||..+.++|..++++++|++|+++|+.++.++.
T Consensus 145 ~ms~eea~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~ 190 (199)
T 3unf_N 145 GMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILG 190 (199)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECG
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCc
Confidence 9999999999999999999999999999999999999988877653
No 26
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=3.5e-44 Score=297.64 Aligned_cols=186 Identities=19% Similarity=0.236 Sum_probs=175.9
Q ss_pred CCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027437 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|||+|||+++||||||+|+|.+.+ ++..++.+||++|++|+++++||+.+|++.|.++++.+++.|++.+++++++
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 109 (233)
T 1yar_A 31 VKKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNI 109 (233)
T ss_dssp HTTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCcEEEEEECCEEEEEEeccCCcc-cccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 678999999999999999999999997 6677889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc----CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCC
Q 027437 92 PAMGQLLSNTLYYKR----FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 92 ~~la~~l~~~~~~~r----~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~ 167 (223)
+.+++.+++++|..+ .|||++++||||||+ ++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 110 ~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~------- 181 (233)
T 1yar_A 110 ENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYK------- 181 (233)
T ss_dssp HHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS-SCEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEEcCCcHHHHHHHHHHhc-------
Confidence 999999999997543 589999999999997 56999999999999999999999999999999999975
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCe
Q 027437 168 PAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGI 213 (223)
Q Consensus 168 ~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~ 213 (223)
++||++||++++++||..+.++|. ++++++|++|+++|.
T Consensus 182 ------~~~s~eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~~ 220 (233)
T 1yar_A 182 ------ENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNK 220 (233)
T ss_dssp ------TTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSC
T ss_pred ------cCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCCC
Confidence 699999999999999999999997 799999999999984
No 27
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=3.5e-44 Score=299.22 Aligned_cols=187 Identities=18% Similarity=0.193 Sum_probs=176.6
Q ss_pred CCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027437 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|||+|||+++||||||+|+|.+.|..+ .++.+||++|++|+++++||+.+|++.|.++++.+++.|++.+++++++
T Consensus 23 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 101 (242)
T 1ryp_E 23 IKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINV 101 (242)
T ss_dssp HTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 678999999999999999999999999766 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc----------CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCC
Q 027437 92 PAMGQLLSNTLYYKR----------FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKS 161 (223)
Q Consensus 92 ~~la~~l~~~~~~~r----------~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~ 161 (223)
+.+++.+++++|.++ .|||++++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 102 ~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~- 180 (242)
T 1ryp_E 102 ESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWH- 180 (242)
T ss_dssp HHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccCEEEECCCCHHHHHHHHHhhc-
Confidence 999999999886531 579999999999996677999999999999999999999999999999999976
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCe
Q 027437 162 PSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGI 213 (223)
Q Consensus 162 ~~~~~~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~ 213 (223)
++||++||++++++||..+.++ ..++++++|++|+++|.
T Consensus 181 ------------~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~ 219 (242)
T 1ryp_E 181 ------------SSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQDG 219 (242)
T ss_dssp ------------TTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTTE
T ss_pred ------------cCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCCC
Confidence 6999999999999999999998 66899999999999997
No 28
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=3.7e-44 Score=297.52 Aligned_cols=188 Identities=16% Similarity=0.226 Sum_probs=175.9
Q ss_pred CCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027437 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|||+|||+++||||||+|+|.+ +.++..++.+||++|++++++++||+.+|++.|.++++.+++.|++.+++++++
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 106 (233)
T 1iru_B 28 VAGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPT 106 (233)
T ss_dssp HHTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 5689999999999999999999998 467888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hhc--CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCC
Q 027437 92 PAMGQLLSNTLY--YKR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 92 ~~la~~l~~~~~--~~r--~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~ 167 (223)
+.+++.++++++ +++ +|||++++||||||+ ++|+||.+||+|++.+++++++|+|+++++++||+.|+
T Consensus 107 ~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~------- 178 (233)
T 1iru_B 107 AQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYN------- 178 (233)
T ss_dssp HHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC-CCCeEEEECCCCCEEEeeEEEECCCCHHHHHHHHHHhc-------
Confidence 999999999994 443 689999999999994 55999999999999999999999999999999999976
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEE
Q 027437 168 PAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHR 215 (223)
Q Consensus 168 ~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~ 215 (223)
++||++||++++++||..+.++| .++++++|++|+++|+++
T Consensus 179 ------~~ms~eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~g~~~ 219 (233)
T 1iru_B 179 ------EDLELEDAIHTAILTLKESFEGQ-MTEDNIEVGICNEAGFRR 219 (233)
T ss_dssp ------TTCCHHHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETTEEEE
T ss_pred ------cCCCHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECCCEEE
Confidence 69999999999999999999999 678999999999999554
No 29
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=1.5e-43 Score=295.32 Aligned_cols=190 Identities=17% Similarity=0.242 Sum_probs=175.7
Q ss_pred cCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027437 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+++|||+|||+++||||||+|+|.+.|.++..++.+||++|++|+++++||+.+|++.|.++++.+++.|++.++++++
T Consensus 24 av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 103 (241)
T 1ryp_D 24 AVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVT 103 (241)
T ss_dssp HHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 37789999999999999999999999997776668999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc----CCCeeEEEEEEEEcCC-CceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCC
Q 027437 91 CPAMGQLLSNTLYYKR----FFPYYSFNVLGGLDNE-GKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPL 165 (223)
Q Consensus 91 ~~~la~~l~~~~~~~r----~~P~~v~~llaG~d~~-~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (223)
++.+++.+++++|.++ .|||++++||||||++ ++|+||.+||+|++.+++++|+|+|+++++++||+.|++
T Consensus 104 v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~---- 179 (241)
T 1ryp_D 104 VEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDR---- 179 (241)
T ss_dssp HHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTCCT----
T ss_pred HHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcHHHHHHHHHhhhc----
Confidence 9999999999997643 5899999999999975 679999999999999999999999999999999999721
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCe
Q 027437 166 LLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGI 213 (223)
Q Consensus 166 ~~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~ 213 (223)
.+++||++||++++++||..+.+ .++++++|++|+++|.
T Consensus 180 ------~~~~ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~~ 218 (241)
T 1ryp_D 180 ------KEPPATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDSD 218 (241)
T ss_dssp ------TSCCCSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTTE
T ss_pred ------ccCCCCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCCc
Confidence 02699999999999999999986 6789999999999973
No 30
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=1.9e-43 Score=293.42 Aligned_cols=186 Identities=22% Similarity=0.312 Sum_probs=177.0
Q ss_pred CeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027437 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.+.|.++..++.+||++|++|+++++||+.+|++.|.++++.+++.|++.++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 68999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCCCCCCCCCC
Q 027437 96 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP 175 (223)
Q Consensus 96 ~~l~~~~~~~r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ 175 (223)
+.+++.+|.++ +||++++|+||||++ +|+||.+||+|++.+++++|+|+|++.++++||+.|+ ++
T Consensus 81 ~~l~~~l~~~~-~~~~v~llvaG~D~~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~-------------~~ 145 (234)
T 1iru_I 81 RMLKQMLFRYR-GYIGAALVLGGVDVT-GPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFR-------------PD 145 (234)
T ss_dssp HHHHHHHHHTT-TCSCEEEEEEEECSS-CEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCC-------------TT
T ss_pred HHHHHHHHhcC-CCCceeEEEEEEcCC-CCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhcc-------------CC
Confidence 99999998765 699999999999974 5999999999999999999999999999999999976 69
Q ss_pred CCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEE
Q 027437 176 LSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHRE 216 (223)
Q Consensus 176 ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~ 216 (223)
||++||++++++||..+.++|..++++++|++|+++|++..
T Consensus 146 ms~eeA~~la~~al~~a~~~d~~sg~~i~v~vi~k~g~~~~ 186 (234)
T 1iru_I 146 MEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFL 186 (234)
T ss_dssp CCHHHHHTHHHHHHHHHHHHCTTCCSCEEEEEEETTEEECC
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEECCcEEEE
Confidence 99999999999999999999998999999999999997643
No 31
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=7.9e-44 Score=296.94 Aligned_cols=186 Identities=19% Similarity=0.220 Sum_probs=175.6
Q ss_pred CCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027437 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|||+|||+++||||||+|+|.+.|..+ .++.+||++|++++++++||+.+|++.|.++++.+++.|++.+++++++
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 109 (241)
T 1iru_E 31 IKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTV 109 (241)
T ss_dssp HTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 678999999999999999999999999766 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--Hhhc-------CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCC
Q 027437 92 PAMGQLLSNTL--YYKR-------FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSP 162 (223)
Q Consensus 92 ~~la~~l~~~~--~~~r-------~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~ 162 (223)
+.+++.+++++ |+++ .|||++++|||||| +++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 110 ~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~-- 186 (241)
T 1iru_E 110 ESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVD-EKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYH-- 186 (241)
T ss_dssp HHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEE-TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHhccccccccccccceEEEEEEEEe-CCCCEEEEECCCCcEEecceEEECCCcHHHHHHHHHHhc--
Confidence 99999999998 4333 57999999999999 567999999999999999999999999999999999975
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCe
Q 027437 163 SPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGI 213 (223)
Q Consensus 163 ~~~~~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~ 213 (223)
++||++||++++++||..+.++ ..++++++|++|+++|+
T Consensus 187 -----------~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~ 225 (241)
T 1iru_E 187 -----------KSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQN 225 (241)
T ss_dssp -----------TTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSSC
T ss_pred -----------cCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCCC
Confidence 6999999999999999999998 67899999999999997
No 32
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=9e-44 Score=298.75 Aligned_cols=186 Identities=12% Similarity=0.103 Sum_probs=175.5
Q ss_pred CCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027437 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|+|+|||+++||||||+|+|.+.|.++ .++.+||++|++||+|++||+.+|++.|.++++.+++.|++.+++++++
T Consensus 30 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 108 (254)
T 1iru_G 30 VENSSTAIGIRCKDGVVFGVEKLVLSKLYE-EGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPL 108 (254)
T ss_dssp HHTSCCEEEEECSSBEEEEEEEECSCTTBC-TTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCCEEEEEECCEEEEEEecccCCCCcC-cCcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 678999999999999999999999999776 4788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc----CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCC
Q 027437 92 PAMGQLLSNTLYYKR----FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 92 ~~la~~l~~~~~~~r----~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~ 167 (223)
+.+++.+++++|.++ +|||+|++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 109 ~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~------- 181 (254)
T 1iru_G 109 KHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQM------- 181 (254)
T ss_dssp HHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSCG-------
T ss_pred HHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEecCccHHHHHHHHHhcc-------
Confidence 999999999996654 689999999999996677999999999999999999999999999999999864
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCC
Q 027437 168 PAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKD 211 (223)
Q Consensus 168 ~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~ 211 (223)
++|+++||++++++||..+.++|..++.+++|++|+++
T Consensus 182 ------~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~ 219 (254)
T 1iru_G 182 ------KEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGEL 219 (254)
T ss_dssp ------GGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTT
T ss_pred ------CCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcC
Confidence 69999999999999999999888778889999999987
No 33
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=2.1e-43 Score=294.95 Aligned_cols=193 Identities=20% Similarity=0.220 Sum_probs=176.6
Q ss_pred CCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027437 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|||+|||+++||||||+|+|.+.|.++.. ..+||++|++||++++||+.+|++.|.++++.+++.|++.+++++++
T Consensus 27 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~-~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 105 (244)
T 1ryp_G 27 VENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPI 105 (244)
T ss_dssp HHTSCCEEEEEETTEEEEEEEEECCCTTBCTT-TSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHCCCCEEEEEECCEEEEEEecccCCCCcccc-ccCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 66899999999999999999999999976654 45999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh--c--CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCC
Q 027437 92 PAMGQLLSNTLYYK--R--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 92 ~~la~~l~~~~~~~--r--~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~ 167 (223)
+.+++.++++++.. + +|||++++||||||+ ++|+||.+||+|++.+++++|+|+|+++++++||+.++.
T Consensus 106 ~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~------ 178 (244)
T 1ryp_G 106 PAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDH------ 178 (244)
T ss_dssp HHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHhcccCccCceEEEEEEEEeC-CcCEEEEECCCCCEEEeeEEEECCChHHHHHHHHHhHhh------
Confidence 99999999999543 3 589999999999996 569999999999999999999999999999999997211
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcC---CCeEEE
Q 027437 168 PAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNK---DGIHRE 216 (223)
Q Consensus 168 ~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~---~g~~~~ 216 (223)
|.++||++||++++++||..+.++|..++.+++|++|++ +|++..
T Consensus 179 ----~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~ 226 (244)
T 1ryp_G 179 ----HPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKF 226 (244)
T ss_dssp ----CTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEE
T ss_pred ----cCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeee
Confidence 236999999999999999999999998999999999998 787653
No 34
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=4e-43 Score=299.85 Aligned_cols=192 Identities=21% Similarity=0.238 Sum_probs=180.6
Q ss_pred cCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027437 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
++++|||+|||+++||||||+|+|.+.|.++..++.+||++|+++++|++||+.+|++.|.++++.+++.|++.++++++
T Consensus 61 Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~is 140 (294)
T 1q5r_H 61 LAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLT 140 (294)
T ss_dssp CSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCCCCC
Confidence 47789999999999999999999999998999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc---CCCeeEEEEEEEEcCCCc-----eEEEEEcCCCceeee--CeEEEcCChhhHHHHHhcccC
Q 027437 91 CPAMGQLLSNTLYYKR---FFPYYSFNVLGGLDNEGK-----GCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLK 160 (223)
Q Consensus 91 ~~~la~~l~~~~~~~r---~~P~~v~~llaG~d~~~~-----~~Ly~id~~G~~~~~--~~~aiG~g~~~~~~~Le~~~~ 160 (223)
++.+++.|++++|.++ .+||+|++||||||++++ |+||.+||+|++.++ +++|+|+|+++++++||+.|+
T Consensus 141 v~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~~y~ 220 (294)
T 1q5r_H 141 FDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYS 220 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHHhcc
Confidence 9999999999997654 689999999999998756 999999999999999 899999999999999999976
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCc--E-----EEEEEcCCCeEE
Q 027437 161 SPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANK--L-----EIVVLNKDGIHR 215 (223)
Q Consensus 161 ~~~~~~~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~--i-----~i~~i~~~g~~~ 215 (223)
++|+++||++++++||..+.++|..+++. + +|++|+++|+++
T Consensus 221 -------------~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g~~~ 269 (294)
T 1q5r_H 221 -------------PDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVH 269 (294)
T ss_dssp -------------SSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEE
T ss_pred -------------CCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCCEEE
Confidence 69999999999999999999999887654 6 999999999765
No 35
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=7.3e-43 Score=290.11 Aligned_cols=187 Identities=21% Similarity=0.239 Sum_probs=176.1
Q ss_pred CeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027437 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 95 (223)
Q Consensus 16 ttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (223)
||+|||+++||||||+|+|.+.|.++..++.+||++|++++++++||+.+|++.|.++++.+++.|++.++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 68999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc---CCCeeEEEEEEEEcCCCc-----eEEEEEcCCCceeee--CeEEEcCChhhHHHHHhcccCCCCCC
Q 027437 96 QLLSNTLYYKR---FFPYYSFNVLGGLDNEGK-----GCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPL 165 (223)
Q Consensus 96 ~~l~~~~~~~r---~~P~~v~~llaG~d~~~~-----~~Ly~id~~G~~~~~--~~~aiG~g~~~~~~~Le~~~~~~~~~ 165 (223)
+.++++++.++ .|||++++||||||++++ |+||.+||+|++.++ +++|+|+|+++++++||+.|+
T Consensus 81 ~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~----- 155 (235)
T 1q5q_H 81 NRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYS----- 155 (235)
T ss_dssp HHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcC-----
Confidence 99999997754 789999999999998756 999999999999999 899999999999999999975
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCc--E-----EEEEEcCCCeEE
Q 027437 166 LLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANK--L-----EIVVLNKDGIHR 215 (223)
Q Consensus 166 ~~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~--i-----~i~~i~~~g~~~ 215 (223)
++||++||++++++||..+.++|..+++. + +|++|+++|+++
T Consensus 156 --------~~ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g~~~ 204 (235)
T 1q5q_H 156 --------PDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVH 204 (235)
T ss_dssp --------TTCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEE
T ss_pred --------CCCCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCCeEE
Confidence 69999999999999999999999887753 2 999999999665
No 36
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.5e-43 Score=298.73 Aligned_cols=192 Identities=19% Similarity=0.323 Sum_probs=177.3
Q ss_pred cCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027437 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+++|+|+|||+++||||||+|+|.+.+ ++..++.+||++|++||+|++||+.+|++.|.++++.+++.|++.++++++
T Consensus 34 av~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~ 112 (264)
T 3h4p_A 34 AVRRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEIS 112 (264)
T ss_dssp HHHHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSCCC
T ss_pred HHhcCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCCCC
Confidence 4568999999999999999999999987 677889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh--c--CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCC
Q 027437 91 CPAMGQLLSNTLYYK--R--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~~~~--r--~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~ 166 (223)
++.+++.++++++.+ + +|||+|++||||||+ ++|+||.+||+|++.+++++|+|+|+.+++++||+.|+
T Consensus 113 v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~-~gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~------ 185 (264)
T 3h4p_A 113 IEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK-NEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYR------ 185 (264)
T ss_dssp HHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET-TEEEEEEECTTCCCEEESEEEESTTHHHHTTTHHHHCC------
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC-CcCEEEEECCCceEEecCeEEECCCHHHHHHHHHHhcc------
Confidence 999999999998543 2 689999999999996 56999999999999999999999999999999999975
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEEEeee
Q 027437 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHREYME 219 (223)
Q Consensus 167 ~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~~~~~ 219 (223)
++||++||++++++||..+.++ .++++++|++|++++..++.++
T Consensus 186 -------~~ms~eea~~la~~al~~a~~~--~sg~~iev~vi~~~~~~~~~l~ 229 (264)
T 3h4p_A 186 -------DDITLDEGLELAITALTKANED--IKPENVDVCIITVKDAQFKKIP 229 (264)
T ss_dssp -------TTCCSHHHHHHHHHHHHHHSSS--CCTTSEEEEEEETTTTEEEECC
T ss_pred -------CCCCHHHHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCCCcEEECC
Confidence 6999999999999999999987 6899999999999875555543
No 37
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=3.3e-43 Score=299.61 Aligned_cols=188 Identities=20% Similarity=0.199 Sum_probs=174.1
Q ss_pred cCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027437 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+++|+|+|||+++||||||+|+|.+.|.++. +..+||++|++||+|++||+.+|++.|.++++.+++.|++.++++++
T Consensus 30 Av~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~-~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~ 108 (288)
T 3nzj_F 30 AVENGTTSIGIKCNDGVVFAVEKLITSKLLVP-QKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIP 108 (288)
T ss_dssp HHHTSCCEEEEEETTEEEEEEEEEECCTTBCT-TCSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHhcCCcEEEEEECCEEEEEEcCCcccCCccc-cccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCcCC
Confidence 56789999999999999999999999997655 47799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh----cCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCC
Q 027437 91 CPAMGQLLSNTLYYK----RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~~~~----r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~ 166 (223)
++.+++.++++++.+ ++|||+|++||||||++ +|+||.+||+|++.+++++|+|+|+++++++||+.++.
T Consensus 109 v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~-Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~~~~----- 182 (288)
T 3nzj_F 109 IPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKN-GAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDH----- 182 (288)
T ss_dssp HHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETT-EEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCC-CCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHHhccc-----
Confidence 999999999999654 27899999999999975 49999999999999999999999999999999999210
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcC
Q 027437 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNK 210 (223)
Q Consensus 167 ~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~ 210 (223)
|.++||++||++++++||..+++++..++.+++|++|++
T Consensus 183 -----~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~ 221 (288)
T 3nzj_F 183 -----HPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSL 221 (288)
T ss_dssp -----CTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEET
T ss_pred -----cCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEe
Confidence 236999999999999999999999988888999999998
No 38
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=4.1e-43 Score=293.81 Aligned_cols=186 Identities=18% Similarity=0.263 Sum_probs=173.7
Q ss_pred cCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027437 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+++|||+|||+++||||||+|+|.+.| ++..++.+||++|++||++++||+.+|++.|.++++.+++.|++.++++++
T Consensus 25 av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 103 (248)
T 1iru_D 25 AVKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVT 103 (248)
T ss_dssp HHHTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred HHHcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 3668999999999999999999999998 566788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc----CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCC
Q 027437 91 CPAMGQLLSNTLYYKR----FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~~~~r----~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~ 166 (223)
++.+++.++++++..+ .|||++++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 104 v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~------ 177 (248)
T 1iru_D 104 VEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT------ 177 (248)
T ss_dssp HHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTCC------
T ss_pred HHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEECCCcHHHHHHHHHhhc------
Confidence 9999999999996543 589999999999996667999999999999999999999999999999999975
Q ss_pred CCCCCCCCCC--CHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCe
Q 027437 167 LPAQDAVTPL--SEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGI 213 (223)
Q Consensus 167 ~~~~~~~~~l--s~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~ 213 (223)
++| |++||++++++||..+.+ .++++++|++|+++|.
T Consensus 178 -------~~m~~s~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g~ 216 (248)
T 1iru_D 178 -------DEAIETDDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQS 216 (248)
T ss_dssp -------SSTTCSHHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSSC
T ss_pred -------ccccCCHHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCCc
Confidence 699 999999999999998887 4688999999999983
No 39
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=8.7e-43 Score=289.27 Aligned_cols=186 Identities=19% Similarity=0.240 Sum_probs=170.9
Q ss_pred cCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027437 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 11 ~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+++|||+|||+++||||||+|+|.+.|. .++.+||++|++||++++||+.+|++.|.++++.+++.|++.++++++
T Consensus 27 av~~Gtt~vgi~~~dgVvlaaD~r~~~~l---~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 103 (233)
T 1ryp_F 27 AIKQGSVTVGLRSNTHAVLVALKRNADEL---SSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLA 103 (233)
T ss_dssp HHHTSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcCCCEEEEEcCCEEEEEEEecccccc---ccccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 35689999999999999999999999884 257899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--h--cCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCC
Q 027437 91 CPAMGQLLSNTLYY--K--RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~~~--~--r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~ 166 (223)
++.+++.++++++. + ..|||++++||||||+ .+|+||.+||+|++.+++++|+|+|+++++++||+.|++
T Consensus 104 v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~----- 177 (233)
T 1ryp_F 104 VERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK-SGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDT----- 177 (233)
T ss_dssp HHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC-CcCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHHhcc-----
Confidence 99999999999944 2 2689999999999997 459999999999999999999999999999999999761
Q ss_pred CCCCCCCCCC--CHHHHHHHHHHHHHHHHhcc-ccCCCcEEEEEEcCCC
Q 027437 167 LPAQDAVTPL--SEAEAVDLVKTCFASATERD-IYTANKLEIVVLNKDG 212 (223)
Q Consensus 167 ~~~~~~~~~l--s~~ea~~l~~~al~~~~~~d-~~~~~~i~i~~i~~~g 212 (223)
.++| |++||++++++||..+. +| ..++++++|++|++++
T Consensus 178 ------~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~ 219 (233)
T 1ryp_F 178 ------FIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDT 219 (233)
T ss_dssp ------HTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTE
T ss_pred ------ccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCC
Confidence 1289 99999999999999999 77 5789999999999994
No 40
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=9.9e-43 Score=293.76 Aligned_cols=186 Identities=16% Similarity=0.191 Sum_probs=172.6
Q ss_pred CCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027437 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|||+|||+++||||||+|+|.+.|. .++.+||++|++||+|++||+.+|++.|.++++.+++.|++.+++++++
T Consensus 29 v~~Gtt~vgi~~~dgVVlaaD~r~~~gl---~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v 105 (263)
T 1iru_F 29 VKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPV 105 (263)
T ss_dssp HHHSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCcEEEEEeCCEEEEEEeccccccc---ccchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 5679999999999999999999999884 3578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh--c--CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCC
Q 027437 92 PAMGQLLSNTLYYK--R--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 92 ~~la~~l~~~~~~~--r--~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~ 167 (223)
+.+++.+++++|.+ + .|||+|++||||||+ ++|+||.+||+|++.+++++|+|+|+++++++||+.|++
T Consensus 106 ~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~------ 178 (263)
T 1iru_F 106 SRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSE------ 178 (263)
T ss_dssp HHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHhhcccccccceEEEEEEEEcC-CCCEEEEECCCCCEEEeeEEEcCcccHHHHHHHHHHhcc------
Confidence 99999999999643 2 689999999999997 559999999999999999999999999999999999761
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcc-ccCCCcEEEEEEcCCC
Q 027437 168 PAQDAVTPLSEAEAVDLVKTCFASATERD-IYTANKLEIVVLNKDG 212 (223)
Q Consensus 168 ~~~~~~~~ls~~ea~~l~~~al~~~~~~d-~~~~~~i~i~~i~~~g 212 (223)
.++||++||++++++||..+.++| ..++++++|++|++++
T Consensus 179 -----~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~ 219 (263)
T 1iru_F 179 -----FMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDL 219 (263)
T ss_dssp -----HTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTE
T ss_pred -----cCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCC
Confidence 139999999999999999999999 4789999999999994
No 41
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=5.6e-42 Score=286.58 Aligned_cols=186 Identities=17% Similarity=0.235 Sum_probs=173.0
Q ss_pred CCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027437 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|||+|||+++||||||+|+|.+.+ ++..++.+||++|+++|++++||+.+|++.|.++++.+++.|++.+++++++
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 109 (246)
T 1j2p_A 31 VKRGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITV 109 (246)
T ss_dssp HHTSCCEEEEEETTEEEEEEECCCSCT-TBCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred HHcCCcEEEEEECCEEEEEEeccCCcc-ccccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 668999999999999999999999987 4557889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--hc--CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCCC
Q 027437 92 PAMGQLLSNTLYY--KR--FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 92 ~~la~~l~~~~~~--~r--~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~~ 167 (223)
+.+++.++++++. ++ .|||++++|+|||| ++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 110 ~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~------- 180 (246)
T 1j2p_A 110 KELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYR------- 180 (246)
T ss_dssp HHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES--SSEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHHhcccCcccccEEEEEEEEC--CCCEEEEECCCceEEeeeEEEECCCcHHHHHHHHHHhc-------
Confidence 9999999999944 33 67999999999999 56999999999999999999999999999999999975
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEc-CC-CeE
Q 027437 168 PAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLN-KD-GIH 214 (223)
Q Consensus 168 ~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~-~~-g~~ 214 (223)
++||++||++++++||..+.++ ..++++++|++|+ ++ |.+
T Consensus 181 ------~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~ 222 (246)
T 1j2p_A 181 ------DDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRTFK 222 (246)
T ss_dssp ------TTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTCCCE
T ss_pred ------cCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCCceE
Confidence 6999999999999999999998 7789999999999 64 444
No 42
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=1.6e-42 Score=295.83 Aligned_cols=191 Identities=20% Similarity=0.261 Sum_probs=160.0
Q ss_pred CCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 027437 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSC 91 (223)
Q Consensus 12 ~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (223)
+++|||+|||+++||||||+|+|.+.|.++..++.+||++|++|++|++||+.+|++.|.++++.+++.|++.+++++++
T Consensus 54 v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v 133 (291)
T 2jay_A 54 LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTF 133 (291)
T ss_dssp ----CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCH
Confidence 67899999999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc---CCCeeEEEEEEEEcCCCc-----eEEEEEcCCCcee--eeCeEEEcCChhhHHHHHhcccCC
Q 027437 92 PAMGQLLSNTLYYKR---FFPYYSFNVLGGLDNEGK-----GCVYTYDAVGSYE--RVGYSSQGSGSTLIMPFLDNQLKS 161 (223)
Q Consensus 92 ~~la~~l~~~~~~~r---~~P~~v~~llaG~d~~~~-----~~Ly~id~~G~~~--~~~~~aiG~g~~~~~~~Le~~~~~ 161 (223)
+.+++.+++++|.++ .|||+|++||||||++++ |+||.+||+|++. +++++|+|+|+++++++||+.|+
T Consensus 134 ~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~- 212 (291)
T 2jay_A 134 AGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYS- 212 (291)
T ss_dssp HHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGG-
T ss_pred HHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcC-
Confidence 999999999998754 579999999999998766 9999999999988 88999999999999999999976
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCc--E-----EEEEEcCCCeEE
Q 027437 162 PSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANK--L-----EIVVLNKDGIHR 215 (223)
Q Consensus 162 ~~~~~~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~--i-----~i~~i~~~g~~~ 215 (223)
++||++||++++++||..++++|..+++. + +|++|+++|+++
T Consensus 213 ------------~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg~~~ 261 (291)
T 2jay_A 213 ------------QVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVD 261 (291)
T ss_dssp ------------GCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTEEEE
T ss_pred ------------CCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCCeEE
Confidence 69999999999999999999999877653 2 699999998665
No 43
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=3.7e-42 Score=288.31 Aligned_cols=186 Identities=17% Similarity=0.222 Sum_probs=172.8
Q ss_pred CCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHH-HHHhcCCCCC
Q 027437 12 DNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLI-YQHQHNKQMS 90 (223)
Q Consensus 12 ~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~-~~~~~~~~~~ 90 (223)
+++|||+|||+++||||||+|+|.+ +.++..++.+||++|++++++++||+.+|++.|.++++.+++. |+..++++++
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 106 (250)
T 1ryp_B 28 VKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPP 106 (250)
T ss_dssp HHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSCCC
T ss_pred HHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 5689999999999999999999998 6678888999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHHhh----cCCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeCeEEEcCChhhHHHHHhcccCCCCCCC
Q 027437 91 CPAMGQLLSNTLYYK----RFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLL 166 (223)
Q Consensus 91 ~~~la~~l~~~~~~~----r~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~~~~ 166 (223)
++.+++.++++++.. ++|||++++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 107 ~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~------ 180 (250)
T 1ryp_B 107 TKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWN------ 180 (250)
T ss_dssp HHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeeceeEecCccHHHHHHHHHHhc------
Confidence 999999888888432 3689999999999998777999999999999999999999999999999999975
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCC
Q 027437 167 LPAQDAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDG 212 (223)
Q Consensus 167 ~~~~~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g 212 (223)
++||++||++++++||..+.+++. ++++++|++|+++|
T Consensus 181 -------~~ms~eea~~la~~al~~~~~~~~-sg~~i~v~vi~~~~ 218 (250)
T 1ryp_B 181 -------DELELEDAIHIALLTLKESVEGEF-NGDTIELAIIGDEN 218 (250)
T ss_dssp -------TTCCHHHHHHHHHHHHHHHCCSCC-STTTEEEEEECSCC
T ss_pred -------cCCCHHHHHHHHHHHHHHHhcccc-CCCCEEEEEEEccc
Confidence 699999999999999999998864 79999999999974
No 44
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=7.6e-42 Score=285.68 Aligned_cols=181 Identities=17% Similarity=0.170 Sum_probs=163.1
Q ss_pred cCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcC-CCC
Q 027437 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQM 89 (223)
Q Consensus 11 ~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~ 89 (223)
.+++|+|+|||+++||||||+|+| +++.+|||+|++||+|++||+.+|++.|.+.++..++.|++.++ +++
T Consensus 23 av~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i 94 (248)
T 3mi0_A 23 GIARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDV 94 (248)
T ss_dssp HHHTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGC
T ss_pred HHhCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 356899999999999999999999 35789999999999999999999999999999999999999999 899
Q ss_pred CHHHHHHHHHHHH---HhhcCCCeeEEEEEEEEcC---CCceEEEEEcCCCceee-eCeEEEcCChhhHHHHHhcccCCC
Q 027437 90 SCPAMGQLLSNTL---YYKRFFPYYSFNVLGGLDN---EGKGCVYTYDAVGSYER-VGYSSQGSGSTLIMPFLDNQLKSP 162 (223)
Q Consensus 90 ~~~~la~~l~~~~---~~~r~~P~~v~~llaG~d~---~~~~~Ly~id~~G~~~~-~~~~aiG~g~~~~~~~Le~~~~~~ 162 (223)
+++.+++.+++.+ |++++|||+|++||||||+ +++|+||.+||+|++.+ ++++|+|+|++.++++||+.|+
T Consensus 95 ~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~-- 172 (248)
T 3mi0_A 95 TGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYA-- 172 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHHHhhcC--
Confidence 9999999999544 5556899999999999997 46799999999999994 9999999999999999999976
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-------hccccCCCcEEEEEEcCCCe
Q 027437 163 SPLLLPAQDAVTPLSEAEAVDLVKTCFASAT-------ERDIYTANKLEIVVLNKDGI 213 (223)
Q Consensus 163 ~~~~~~~~~~~~~ls~~ea~~l~~~al~~~~-------~~d~~~~~~i~i~~i~~~g~ 213 (223)
++|+++||++++++||..++ +++ .++.+++|++|+++|.
T Consensus 173 -----------~~mt~eeai~la~~aL~~~~~~~~~~~~~~-~~~~~iev~vv~~~g~ 218 (248)
T 3mi0_A 173 -----------ENASLTDALRIAVAALRAGSADTSGGDQPT-LGVASLEVAVLDANRP 218 (248)
T ss_dssp -----------TTCCHHHHHHHHHHHHHHC-------------CCTTEEEEEEETTSS
T ss_pred -----------CCCCHHHHHHHHHHHHHHHHhhcccCcccc-cCCCcEEEEEEECCCC
Confidence 69999999999999999999 454 5788999999999983
No 45
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=4.6e-41 Score=282.95 Aligned_cols=180 Identities=16% Similarity=0.195 Sum_probs=164.5
Q ss_pred cCCCCCeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEccCceEEEecCChhHHHHHHHHHHHHHHHHHHhcC-CCC
Q 027437 11 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQM 89 (223)
Q Consensus 11 ~~~~gttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~ 89 (223)
.+++|+|+|||+++||||||+|+| +++.+||++|++||+|++||+.+|++.|.++++.+++.+.+.++ +++
T Consensus 23 av~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i 94 (259)
T 1q5q_A 23 GIARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDV 94 (259)
T ss_dssp HHHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGC
T ss_pred HHhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcCC
Confidence 356899999999999999999998 26789999999999999999999999999999999999999988 499
Q ss_pred CHHHHHHHHHHHH---HhhcCCCeeEEEEEEEEc--C-CCceEEEEEcCCCcee-eeCeEEEcCChhhHHHHHhcccCCC
Q 027437 90 SCPAMGQLLSNTL---YYKRFFPYYSFNVLGGLD--N-EGKGCVYTYDAVGSYE-RVGYSSQGSGSTLIMPFLDNQLKSP 162 (223)
Q Consensus 90 ~~~~la~~l~~~~---~~~r~~P~~v~~llaG~d--~-~~~~~Ly~id~~G~~~-~~~~~aiG~g~~~~~~~Le~~~~~~ 162 (223)
+++.+++.+++.+ |+.++|||+|++|||||| + +++|+||.+||+|++. +++++++|+|++.++++||+.|+
T Consensus 95 ~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~-- 172 (259)
T 1q5q_A 95 TGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYR-- 172 (259)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhcc--
Confidence 9999999999953 666789999999999999 3 5669999999999999 88999999999999999999976
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-----hccccCCCcEEEEEEcCCC
Q 027437 163 SPLLLPAQDAVTPLSEAEAVDLVKTCFASAT-----ERDIYTANKLEIVVLNKDG 212 (223)
Q Consensus 163 ~~~~~~~~~~~~~ls~~ea~~l~~~al~~~~-----~~d~~~~~~i~i~~i~~~g 212 (223)
++|+++||++++++||..+. ++|. ++++++|++|+++|
T Consensus 173 -----------~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~~ 215 (259)
T 1q5q_A 173 -----------ADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQSR 215 (259)
T ss_dssp -----------TTCCHHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETTS
T ss_pred -----------CCCCHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECCC
Confidence 69999999999999999998 8898 89999999999995
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=2e-36 Score=241.85 Aligned_cols=169 Identities=17% Similarity=0.202 Sum_probs=149.8
Q ss_pred CCCCeEEEEEcCCEEEEeEecCcccCce-eeecCcCeeEEc-cCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027437 13 NNGGTCVAIAGADYCVTAADTRMSTGYS-ILSRDYSKIIKL-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMS 90 (223)
Q Consensus 13 ~~gttvigi~~kdgVvlaad~~~~~g~~-~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (223)
.+|||+|||+++||||||+|+|.+.|.+ +..++.+||++| ++|+++++||..+|++.|.++++.+++.|+ + +
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g---~ 76 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G---N 76 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T---C
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C---C
Confidence 5799999999999999999999999877 999999999999 999999999999999999999999999887 3 3
Q ss_pred HHHHHHHHHHHHHhhc-CCCeeEEEEEEEEcCCCceEEEEEcCCCceeee--CeEEEcCChhhHHHHHhcccCCCCCCCC
Q 027437 91 CPAMGQLLSNTLYYKR-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPLLL 167 (223)
Q Consensus 91 ~~~la~~l~~~~~~~r-~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~--~~~aiG~g~~~~~~~Le~~~~~~~~~~~ 167 (223)
....+..+++.++..+ .|||++++|+| | +|+||.+||+|++.++ ++.|+|+|+++++++||+.|+
T Consensus 77 ~~~~~~~l~~~~~~~~~~rp~~~~~lva--d---~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~------- 144 (180)
T 2z3b_A 77 LKRAAVELAKEWRSDKVLRKLEAMLIVM--N---QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKK------- 144 (180)
T ss_dssp HHHHHHHHHHHHHHCTTGGGCCCCEEEE--C---SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHhhhCcCcceEEEEEE--c---CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhh-------
Confidence 3333334566665544 57999999999 3 3899999999999984 899999999999999999976
Q ss_pred CCCCCCC---CCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEE
Q 027437 168 PAQDAVT---PLSEAEAVDLVKTCFASATERDIYTANKLEIVVL 208 (223)
Q Consensus 168 ~~~~~~~---~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i 208 (223)
+ +|+.+| ++.+||..+.++|..++++++|.+|
T Consensus 145 ------~~~~~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 145 ------HAGESMSASE---IARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp ------HHGGGCCHHH---HHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred ------ccCCCCCHHH---HHHHHHHHHHHhcCccCCeEEEEEE
Confidence 5 899999 4679999999999999999999998
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=1.5e-35 Score=234.74 Aligned_cols=167 Identities=20% Similarity=0.240 Sum_probs=148.5
Q ss_pred CeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEc-cCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027437 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKL-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (223)
Q Consensus 16 ttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
||+|||+++||||||+|+|.+.|.++..++.+||++| ++|+++++||+.+|++.|.++++.+++.|+.+ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 6999999999999999999999989999999999999 99999999999999999999999999987743 25666
Q ss_pred HHHHHHHHHhhc-CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeC--eEEEcCChhhHHHHHhcccCCCCCCCCCCCC
Q 027437 95 GQLLSNTLYYKR-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVG--YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQD 171 (223)
Q Consensus 95 a~~l~~~~~~~r-~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~--~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~~ 171 (223)
++. .+.+++++ .+||++++|++ | +|+||.+||+|++.+++ +.|+|+|+++++++||+.|+.
T Consensus 76 ~~l-~~~~~~~~~~~~~~~~~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~---------- 139 (171)
T 1m4y_A 76 VEL-AKDWRTDRVLRRLEALLLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRN---------- 139 (171)
T ss_dssp HHH-HHHHHHCTTGGGCCCEEEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHH----------
T ss_pred HHH-HHHHHHhCCCCceEEEEEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhccc----------
Confidence 665 44666666 46799999988 5 59999999999999988 999999999999999999761
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEE
Q 027437 172 AVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVL 208 (223)
Q Consensus 172 ~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i 208 (223)
++||. .+++++||..+.++|..++++++|.++
T Consensus 140 --~~ms~---~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 140 --TDLSA---REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp --CCCCH---HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred --CCCCH---HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 58996 678999999999999999999999864
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=1.6e-35 Score=235.29 Aligned_cols=168 Identities=18% Similarity=0.190 Sum_probs=151.0
Q ss_pred CeEEEEEcCCEEEEeEecCcccCceeeecCcCeeEEc-cCceEEEecCChhHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 027437 16 GTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKL-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 94 (223)
Q Consensus 16 ttvigi~~kdgVvlaad~~~~~g~~~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (223)
||+|||+++||||||+|+|.+.|.++.+++.+||++| ++|+++++||+.+|++.|.++++.+++.|++ +....
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 6899999999999999999999988999999999999 9999999999999999999999999998874 45666
Q ss_pred HHHHHHHHHhhc-CCCeeEEEEEEEEcCCCceEEEEEcCCCceeeeC---eEEEcCChhhHHHHHhcccCCCCCCCCCCC
Q 027437 95 GQLLSNTLYYKR-FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVG---YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQ 170 (223)
Q Consensus 95 a~~l~~~~~~~r-~~P~~v~~llaG~d~~~~~~Ly~id~~G~~~~~~---~~aiG~g~~~~~~~Le~~~~~~~~~~~~~~ 170 (223)
+..+++.++.+| .||+ +.+++|+| +|+||.+||+|++.+++ +.|+|+|+++++++||+.|+.
T Consensus 75 ~~~l~~~~~~~~~~r~~--~~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~--------- 140 (174)
T 1g3k_A 75 AVELAKDWRTDRALRKL--EAMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVEN--------- 140 (174)
T ss_dssp HHHHHHHHHHSTTGGGC--CCEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHhccCcCcc--eEEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhccc---------
Confidence 777888887766 4565 56777887 49999999999999988 999999999999999999761
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEc
Q 027437 171 DAVTPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLN 209 (223)
Q Consensus 171 ~~~~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~ 209 (223)
++||.+ +++.+||..+.++|..++++++|++|+
T Consensus 141 ---~~mt~~---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 141 ---TELSAH---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp ---CCCCHH---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred ---CCCCHH---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 599955 799999999999999999999999985
No 49
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=55.54 E-value=35 Score=26.52 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEE
Q 027437 174 TPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHR 215 (223)
Q Consensus 174 ~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~ 215 (223)
+.+++++|.+++..++..+.++. .++.|.|++..|.-.
T Consensus 63 ~~ltl~~A~~l~~aA~~~A~~~g----~pV~IaVvD~~G~ll 100 (192)
T 3fpw_A 63 THLTLEAATKAARAAVEAAEKDG----RHVSVAVVDRNGNTL 100 (192)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTT----CCCEEEEEETTSCEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhcC----CCEEEEEEeCCCCEE
Confidence 68999999999999999998853 589999999988543
No 50
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=45.78 E-value=33 Score=25.19 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEcCCCeEE
Q 027437 174 TPLSEAEAVDLVKTCFASATERDIYTANKLEIVVLNKDGIHR 215 (223)
Q Consensus 174 ~~ls~~ea~~l~~~al~~~~~~d~~~~~~i~i~~i~~~g~~~ 215 (223)
+.+|+++|.+++..++..+.++ +.++.|.|++..|...
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~----g~~v~IaVvD~~G~ll 47 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEI----NVAVVFSVVDRGGNTL 47 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSCEE
T ss_pred cCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEECCCCEE
Confidence 5799999999999999998875 4589999999988543
No 51
>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102}
Probab=21.45 E-value=1.2e+02 Score=20.70 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=13.3
Q ss_pred eEEEEEcCCCceeeeC
Q 027437 125 GCVYTYDAVGSYERVG 140 (223)
Q Consensus 125 ~~Ly~id~~G~~~~~~ 140 (223)
-.+|..||.|+..+..
T Consensus 134 ~~~~~~DPdG~~iel~ 149 (156)
T 3kol_A 134 RGVYFYDPDGFMIEIR 149 (156)
T ss_dssp EEEEEECTTSCEEEEE
T ss_pred cEEEEECCCCCEEEEE
Confidence 5889999999987754
Done!