Query 027438
Match_columns 223
No_of_seqs 149 out of 1861
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 09:56:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027438.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027438hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.6E-43 3.5E-48 254.6 20.5 175 8-182 3-178 (205)
2 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.8E-40 3.9E-45 241.3 21.8 222 1-222 1-222 (222)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 4.5E-40 9.7E-45 236.0 20.0 168 12-179 3-170 (200)
4 KOG0078 GTP-binding protein SE 100.0 7.4E-39 1.6E-43 233.8 22.2 173 10-182 8-180 (207)
5 KOG0098 GTPase Rab2, small G p 100.0 5.5E-39 1.2E-43 228.7 19.8 175 11-185 3-177 (216)
6 KOG0080 GTPase Rab18, small G 100.0 1.1E-38 2.3E-43 221.9 19.3 168 9-176 6-174 (209)
7 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.2E-38 2.6E-43 228.8 19.0 167 12-178 20-187 (221)
8 PLN03110 Rab GTPase; Provision 100.0 1.1E-37 2.4E-42 238.8 25.5 207 11-222 9-215 (216)
9 KOG0394 Ras-related GTPase [Ge 100.0 4.8E-38 1E-42 223.6 18.0 172 10-181 5-183 (210)
10 cd04120 Rab12 Rab12 subfamily. 100.0 5.1E-37 1.1E-41 231.9 24.4 166 15-180 1-167 (202)
11 KOG0079 GTP-binding protein H- 100.0 4.6E-38 1E-42 215.9 15.4 170 9-179 3-172 (198)
12 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.7E-36 3.7E-41 230.0 23.9 165 15-179 1-171 (201)
13 cd04121 Rab40 Rab40 subfamily. 100.0 1.4E-36 3E-41 227.5 23.0 169 11-180 3-171 (189)
14 KOG0095 GTPase Rab30, small G 100.0 1.4E-37 3E-42 214.0 14.9 180 9-188 2-181 (213)
15 KOG0093 GTPase Rab3, small G p 100.0 1.1E-36 2.4E-41 208.8 16.6 172 11-182 18-189 (193)
16 cd04110 Rab35 Rab35 subfamily. 100.0 2.6E-35 5.5E-40 223.2 24.3 196 12-221 4-199 (199)
17 cd04125 RabA_like RabA-like su 100.0 3.1E-35 6.7E-40 220.9 24.1 164 15-178 1-164 (188)
18 cd04122 Rab14 Rab14 subfamily. 100.0 5E-35 1.1E-39 215.5 22.8 164 14-177 2-165 (166)
19 cd04126 Rab20 Rab20 subfamily. 100.0 6.4E-35 1.4E-39 222.8 23.5 187 15-221 1-220 (220)
20 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 5.1E-35 1.1E-39 218.0 21.5 164 11-176 2-180 (182)
21 cd01867 Rab8_Rab10_Rab13_like 100.0 1.4E-34 3E-39 213.4 22.7 166 12-177 1-166 (167)
22 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.2E-34 4.8E-39 221.1 24.2 171 10-182 9-194 (232)
23 PTZ00369 Ras-like protein; Pro 100.0 1.1E-34 2.4E-39 218.0 22.0 164 13-177 4-168 (189)
24 cd04109 Rab28 Rab28 subfamily. 100.0 9.4E-35 2E-39 222.6 21.9 164 15-178 1-168 (215)
25 cd04133 Rop_like Rop subfamily 100.0 9.4E-35 2E-39 215.3 21.1 159 15-175 2-172 (176)
26 PLN03108 Rab family protein; P 100.0 3.5E-34 7.7E-39 218.5 24.9 172 12-183 4-175 (210)
27 cd04112 Rab26 Rab26 subfamily. 100.0 2.3E-34 5.1E-39 216.6 23.3 163 15-177 1-164 (191)
28 cd04111 Rab39 Rab39 subfamily. 100.0 3.4E-34 7.4E-39 218.6 24.1 170 14-183 2-173 (211)
29 cd04117 Rab15 Rab15 subfamily. 100.0 1.8E-34 4E-39 211.5 21.7 160 15-174 1-160 (161)
30 KOG0086 GTPase Rab4, small G p 100.0 4.9E-35 1.1E-39 202.1 16.0 177 7-183 2-178 (214)
31 cd04144 Ras2 Ras2 subfamily. 100.0 2.9E-34 6.2E-39 216.0 21.6 162 16-178 1-165 (190)
32 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 3.4E-34 7.3E-39 212.2 21.4 165 14-179 2-167 (172)
33 cd04131 Rnd Rnd subfamily. Th 100.0 3.4E-34 7.4E-39 213.1 21.2 160 15-176 2-176 (178)
34 PF00071 Ras: Ras family; Int 100.0 3.9E-34 8.4E-39 209.8 21.2 161 16-176 1-161 (162)
35 cd04127 Rab27A Rab27a subfamil 100.0 5.2E-34 1.1E-38 212.7 22.2 167 12-178 2-179 (180)
36 cd01865 Rab3 Rab3 subfamily. 100.0 8.5E-34 1.9E-38 208.8 22.9 162 15-176 2-163 (165)
37 KOG0088 GTPase Rab21, small G 100.0 2E-35 4.4E-40 205.1 13.1 211 9-223 8-218 (218)
38 KOG0091 GTPase Rab39, small G 100.0 4.9E-35 1.1E-39 204.2 14.7 171 11-181 5-178 (213)
39 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.1E-33 2.4E-38 208.3 22.7 163 14-176 2-164 (166)
40 cd04119 RJL RJL (RabJ-Like) su 100.0 8.5E-34 1.9E-38 208.9 21.8 162 15-176 1-167 (168)
41 cd01875 RhoG RhoG subfamily. 100.0 1.4E-33 3E-38 212.4 22.1 160 14-175 3-176 (191)
42 cd01866 Rab2 Rab2 subfamily. 100.0 2.8E-33 6.1E-38 206.6 23.3 166 12-177 2-167 (168)
43 cd01868 Rab11_like Rab11-like. 100.0 2.2E-33 4.7E-38 206.5 22.1 163 13-175 2-164 (165)
44 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.6E-33 3.5E-38 210.2 21.5 162 15-177 1-167 (182)
45 cd01864 Rab19 Rab19 subfamily. 100.0 3.8E-33 8.1E-38 205.3 21.9 162 13-174 2-164 (165)
46 cd01874 Cdc42 Cdc42 subfamily. 100.0 2.5E-33 5.4E-38 208.1 20.9 160 14-175 1-174 (175)
47 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 4.5E-33 9.7E-38 212.8 22.5 163 15-179 2-179 (222)
48 cd04118 Rab24 Rab24 subfamily. 100.0 1.9E-32 4.2E-37 206.5 24.5 164 15-179 1-169 (193)
49 cd04113 Rab4 Rab4 subfamily. 100.0 7.4E-33 1.6E-37 202.9 21.4 160 15-174 1-160 (161)
50 PLN03071 GTP-binding nuclear p 100.0 7.2E-33 1.6E-37 212.4 21.7 165 11-178 10-174 (219)
51 cd04132 Rho4_like Rho4-like su 100.0 1.3E-32 2.8E-37 206.4 22.5 163 15-179 1-170 (187)
52 cd04136 Rap_like Rap-like subf 100.0 7.4E-33 1.6E-37 203.1 20.7 160 15-175 2-162 (163)
53 smart00175 RAB Rab subfamily o 100.0 1.6E-32 3.5E-37 201.4 22.1 163 15-177 1-163 (164)
54 KOG0097 GTPase Rab14, small G 100.0 5.3E-33 1.1E-37 189.9 17.7 175 11-185 8-182 (215)
55 cd00877 Ran Ran (Ras-related n 100.0 1.6E-32 3.4E-37 202.2 21.7 160 15-177 1-160 (166)
56 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 2.3E-32 4.9E-37 202.1 22.5 162 16-177 2-166 (170)
57 cd04106 Rab23_lke Rab23-like s 100.0 1.6E-32 3.4E-37 201.2 21.4 158 15-173 1-160 (162)
58 PLN03118 Rab family protein; P 100.0 8.3E-32 1.8E-36 205.8 25.9 170 8-178 8-179 (211)
59 cd04175 Rap1 Rap1 subgroup. T 100.0 1.6E-32 3.4E-37 201.7 21.0 161 14-175 1-162 (164)
60 cd04116 Rab9 Rab9 subfamily. 100.0 3.4E-32 7.5E-37 201.1 22.1 163 11-174 2-169 (170)
61 cd04124 RabL2 RabL2 subfamily. 100.0 3.3E-32 7.1E-37 199.6 21.6 160 15-178 1-160 (161)
62 cd04176 Rap2 Rap2 subgroup. T 100.0 3E-32 6.4E-37 200.1 20.8 161 14-175 1-162 (163)
63 KOG0081 GTPase Rab27, small G 100.0 1.8E-34 3.8E-39 200.6 8.3 175 9-183 4-188 (219)
64 cd01871 Rac1_like Rac1-like su 100.0 3.6E-32 7.7E-37 201.7 20.7 158 15-174 2-173 (174)
65 cd04134 Rho3 Rho3 subfamily. 100.0 5.6E-32 1.2E-36 203.3 21.9 160 15-176 1-174 (189)
66 cd01861 Rab6 Rab6 subfamily. 100.0 7.6E-32 1.7E-36 197.4 21.5 160 15-174 1-160 (161)
67 smart00173 RAS Ras subfamily o 100.0 7.2E-32 1.6E-36 198.1 21.1 161 15-176 1-162 (164)
68 cd04140 ARHI_like ARHI subfami 100.0 7.6E-32 1.7E-36 198.4 20.8 158 15-173 2-162 (165)
69 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.1E-31 2.3E-36 198.5 21.6 162 14-175 2-168 (170)
70 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.2E-31 2.6E-36 196.3 21.4 160 14-175 1-161 (162)
71 cd01860 Rab5_related Rab5-rela 100.0 1.8E-31 3.9E-36 195.8 22.3 162 14-175 1-162 (163)
72 cd04142 RRP22 RRP22 subfamily. 100.0 9.7E-32 2.1E-36 203.0 20.6 166 15-180 1-178 (198)
73 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.9E-31 4.1E-36 195.8 21.4 161 14-175 2-163 (164)
74 smart00176 RAN Ran (Ras-relate 100.0 1.5E-31 3.3E-36 201.8 21.2 156 20-178 1-156 (200)
75 cd04101 RabL4 RabL4 (Rab-like4 100.0 3.7E-31 7.9E-36 194.4 21.7 160 15-175 1-163 (164)
76 cd01873 RhoBTB RhoBTB subfamil 100.0 2E-31 4.4E-36 200.6 19.9 157 14-173 2-193 (195)
77 cd04123 Rab21 Rab21 subfamily. 100.0 1.1E-30 2.5E-35 191.0 22.2 161 15-175 1-161 (162)
78 smart00174 RHO Rho (Ras homolo 100.0 5E-31 1.1E-35 195.6 20.4 158 17-176 1-172 (174)
79 cd01862 Rab7 Rab7 subfamily. 100.0 1E-30 2.3E-35 193.3 22.1 164 15-178 1-169 (172)
80 cd04114 Rab30 Rab30 subfamily. 100.0 1.6E-30 3.6E-35 191.8 22.8 165 11-175 4-168 (169)
81 cd04103 Centaurin_gamma Centau 100.0 6E-31 1.3E-35 192.1 19.6 153 15-174 1-157 (158)
82 cd04143 Rhes_like Rhes_like su 100.0 7.2E-31 1.6E-35 204.2 21.2 160 15-175 1-170 (247)
83 cd01863 Rab18 Rab18 subfamily. 100.0 2E-30 4.3E-35 189.9 21.6 159 15-174 1-160 (161)
84 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.5E-30 3.3E-35 192.9 20.9 157 15-173 1-171 (173)
85 cd04177 RSR1 RSR1 subgroup. R 100.0 2.2E-30 4.8E-35 191.1 21.5 161 15-176 2-164 (168)
86 cd04146 RERG_RasL11_like RERG/ 100.0 8.3E-31 1.8E-35 192.8 19.0 159 16-175 1-163 (165)
87 cd01892 Miro2 Miro2 subfamily. 100.0 1.2E-30 2.5E-35 192.8 19.6 163 12-176 2-166 (169)
88 cd04148 RGK RGK subfamily. Th 100.0 2E-30 4.2E-35 199.2 21.3 165 15-181 1-168 (221)
89 cd04135 Tc10 TC10 subfamily. 100.0 2.1E-30 4.6E-35 192.2 20.6 159 15-175 1-173 (174)
90 cd00154 Rab Rab family. Rab G 100.0 4.3E-30 9.3E-35 186.9 20.9 158 15-172 1-158 (159)
91 KOG0083 GTPase Rab26/Rab37, sm 100.0 1.9E-32 4.2E-37 185.2 5.9 160 18-177 1-161 (192)
92 cd04139 RalA_RalB RalA/RalB su 100.0 2.8E-29 6.1E-34 184.1 21.4 161 15-176 1-162 (164)
93 cd00876 Ras Ras family. The R 100.0 2.4E-29 5.1E-34 183.7 19.7 158 16-174 1-159 (160)
94 cd01870 RhoA_like RhoA-like su 100.0 6.5E-29 1.4E-33 184.3 21.0 159 15-175 2-174 (175)
95 cd04129 Rho2 Rho2 subfamily. 100.0 7.8E-29 1.7E-33 185.9 20.4 161 15-177 2-174 (187)
96 KOG4252 GTP-binding protein [S 100.0 2.4E-31 5.2E-36 188.6 5.8 192 5-197 11-202 (246)
97 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.5E-28 3.3E-33 183.8 20.4 166 14-182 3-176 (183)
98 cd04147 Ras_dva Ras-dva subfam 100.0 1.8E-28 4E-33 185.5 20.5 160 16-176 1-163 (198)
99 cd04137 RheB Rheb (Ras Homolog 100.0 2.8E-28 6.1E-33 181.8 21.2 162 15-177 2-164 (180)
100 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 1.3E-29 2.7E-34 186.4 13.4 153 16-173 1-163 (164)
101 cd00157 Rho Rho (Ras homology) 100.0 2.7E-28 5.9E-33 180.2 20.5 157 15-173 1-170 (171)
102 cd04149 Arf6 Arf6 subfamily. 100.0 6.8E-29 1.5E-33 183.1 17.1 154 13-173 8-167 (168)
103 cd04158 ARD1 ARD1 subfamily. 100.0 1.6E-28 3.4E-33 181.4 18.5 155 16-177 1-162 (169)
104 PLN00223 ADP-ribosylation fact 100.0 1.7E-28 3.7E-33 183.0 18.8 159 12-177 15-179 (181)
105 KOG0395 Ras-related GTPase [Ge 100.0 1.1E-28 2.4E-33 184.9 17.9 163 13-176 2-165 (196)
106 PTZ00132 GTP-binding nuclear p 100.0 9.7E-28 2.1E-32 183.9 22.3 166 9-177 4-169 (215)
107 cd04102 RabL3 RabL3 (Rab-like3 100.0 6.2E-28 1.4E-32 182.0 20.6 147 15-161 1-175 (202)
108 smart00177 ARF ARF-like small 100.0 7.4E-29 1.6E-33 184.2 15.3 156 13-175 12-173 (175)
109 cd04150 Arf1_5_like Arf1-Arf5- 100.0 5.5E-29 1.2E-33 182.0 14.3 152 15-173 1-158 (159)
110 PTZ00133 ADP-ribosylation fact 100.0 5E-28 1.1E-32 180.7 19.0 160 12-178 15-180 (182)
111 cd04154 Arl2 Arl2 subfamily. 100.0 5.9E-28 1.3E-32 179.0 18.0 158 9-173 9-172 (173)
112 KOG0393 Ras-related small GTPa 100.0 6.5E-29 1.4E-33 182.5 12.1 164 12-177 2-180 (198)
113 cd01893 Miro1 Miro1 subfamily. 100.0 1.2E-27 2.5E-32 176.2 18.8 159 15-176 1-164 (166)
114 cd04157 Arl6 Arl6 subfamily. 100.0 2.4E-27 5.1E-32 173.6 16.6 152 16-173 1-161 (162)
115 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 5.3E-27 1.2E-31 174.0 17.4 154 13-173 14-173 (174)
116 PTZ00099 rab6; Provisional 100.0 2.8E-26 6.1E-31 170.0 20.2 140 37-176 3-142 (176)
117 cd04161 Arl2l1_Arl13_like Arl2 100.0 3.5E-27 7.7E-32 173.8 14.5 153 16-173 1-166 (167)
118 cd04156 ARLTS1 ARLTS1 subfamil 100.0 6.1E-27 1.3E-31 171.2 15.4 152 16-173 1-159 (160)
119 PLN00023 GTP-binding protein; 99.9 4.3E-26 9.4E-31 180.2 20.5 143 9-151 16-189 (334)
120 cd00879 Sar1 Sar1 subfamily. 99.9 2E-26 4.4E-31 173.2 17.8 156 12-174 17-189 (190)
121 cd04151 Arl1 Arl1 subfamily. 99.9 6.9E-27 1.5E-31 170.7 14.1 151 16-173 1-157 (158)
122 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.4E-26 3E-31 169.0 15.6 151 16-173 1-157 (158)
123 cd04160 Arfrp1 Arfrp1 subfamil 99.9 2.6E-26 5.7E-31 169.0 16.8 152 16-173 1-166 (167)
124 smart00178 SAR Sar1p-like memb 99.9 1.8E-25 3.8E-30 167.3 17.4 156 12-174 15-183 (184)
125 PF00025 Arf: ADP-ribosylation 99.9 2.4E-25 5.3E-30 165.1 16.4 158 11-175 11-175 (175)
126 cd04159 Arl10_like Arl10-like 99.9 3.8E-25 8.3E-30 160.9 16.6 151 17-173 2-158 (159)
127 cd01897 NOG NOG1 is a nucleola 99.9 3.5E-25 7.6E-30 163.2 16.3 156 15-175 1-167 (168)
128 cd01890 LepA LepA subfamily. 99.9 5.5E-25 1.2E-29 163.8 16.5 154 16-175 2-176 (179)
129 cd01898 Obg Obg subfamily. Th 99.9 3.5E-25 7.6E-30 163.4 15.3 157 16-174 2-169 (170)
130 KOG0073 GTP-binding ADP-ribosy 99.9 2.6E-24 5.6E-29 150.7 17.6 163 11-178 13-180 (185)
131 TIGR00231 small_GTP small GTP- 99.9 2.5E-24 5.5E-29 156.2 18.5 158 14-172 1-160 (161)
132 cd01878 HflX HflX subfamily. 99.9 6.6E-25 1.4E-29 166.8 15.5 157 11-174 38-203 (204)
133 PRK03003 GTP-binding protein D 99.9 1.4E-24 3.1E-29 183.7 18.0 204 12-222 209-434 (472)
134 cd04155 Arl3 Arl3 subfamily. 99.9 4.3E-24 9.3E-29 158.1 18.3 154 10-173 10-172 (173)
135 PRK12299 obgE GTPase CgtA; Rev 99.9 2.2E-24 4.9E-29 174.0 18.1 163 14-177 158-329 (335)
136 KOG1673 Ras GTPases [General f 99.9 1.1E-24 2.4E-29 151.2 12.9 173 4-177 10-187 (205)
137 TIGR03594 GTPase_EngA ribosome 99.9 4.6E-24 1E-28 179.4 19.0 205 11-222 169-396 (429)
138 cd04171 SelB SelB subfamily. 99.9 4.5E-24 9.8E-29 156.4 16.5 152 15-173 1-163 (164)
139 COG1100 GTPase SAR1 and relate 99.9 3.2E-23 6.9E-28 159.2 20.2 170 14-183 5-192 (219)
140 TIGR02528 EutP ethanolamine ut 99.9 2E-24 4.3E-29 154.9 12.5 134 16-172 2-141 (142)
141 cd00882 Ras_like_GTPase Ras-li 99.9 5.9E-23 1.3E-27 147.6 17.7 153 19-172 1-156 (157)
142 PRK04213 GTP-binding protein; 99.9 3.7E-24 8.1E-29 162.3 10.6 155 10-177 5-193 (201)
143 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 5E-23 1.1E-27 151.5 16.2 153 16-175 2-165 (168)
144 PF02421 FeoB_N: Ferrous iron 99.9 1.3E-23 2.9E-28 150.7 12.2 148 15-171 1-156 (156)
145 cd01879 FeoB Ferrous iron tran 99.9 5.9E-23 1.3E-27 149.6 15.6 148 19-175 1-156 (158)
146 TIGR02729 Obg_CgtA Obg family 99.9 6.9E-23 1.5E-27 165.3 17.5 160 14-175 157-328 (329)
147 PRK00093 GTP-binding protein D 99.9 5.9E-23 1.3E-27 172.9 17.1 204 12-222 171-396 (435)
148 TIGR03156 GTP_HflX GTP-binding 99.9 1E-22 2.2E-27 165.6 17.3 155 12-174 187-350 (351)
149 cd01891 TypA_BipA TypA (tyrosi 99.9 3.9E-23 8.4E-28 155.9 13.2 149 15-167 3-173 (194)
150 TIGR00436 era GTP-binding prot 99.9 1.2E-22 2.6E-27 160.6 15.2 152 16-175 2-163 (270)
151 cd01881 Obg_like The Obg-like 99.9 8.3E-23 1.8E-27 151.4 13.0 155 19-174 1-175 (176)
152 KOG0070 GTP-binding ADP-ribosy 99.9 6.9E-23 1.5E-27 147.1 11.8 160 11-177 14-179 (181)
153 KOG3883 Ras family small GTPas 99.9 1.4E-21 3.1E-26 135.5 17.3 163 13-175 8-174 (198)
154 cd04164 trmE TrmE (MnmE, ThdF, 99.9 2.8E-22 6.1E-27 145.6 14.8 146 15-175 2-156 (157)
155 TIGR00450 mnmE_trmE_thdF tRNA 99.9 6.3E-22 1.4E-26 165.4 17.1 154 12-179 201-363 (442)
156 PF08477 Miro: Miro-like prote 99.9 5.7E-22 1.2E-26 137.9 13.6 114 16-130 1-119 (119)
157 PRK15494 era GTPase Era; Provi 99.9 7E-22 1.5E-26 160.5 15.7 154 12-175 50-215 (339)
158 PRK09518 bifunctional cytidyla 99.9 2.2E-21 4.8E-26 171.5 20.0 202 13-222 449-673 (712)
159 PRK12297 obgE GTPase CgtA; Rev 99.9 4.2E-21 9.1E-26 158.8 19.3 159 15-178 159-329 (424)
160 cd00881 GTP_translation_factor 99.9 1.2E-21 2.5E-26 146.8 14.6 156 16-175 1-186 (189)
161 TIGR01393 lepA GTP-binding pro 99.9 2E-21 4.4E-26 167.7 17.8 156 14-175 3-179 (595)
162 cd01889 SelB_euk SelB subfamil 99.9 8.8E-22 1.9E-26 148.3 13.7 157 15-175 1-185 (192)
163 PRK05291 trmE tRNA modificatio 99.9 1.6E-21 3.5E-26 163.7 16.1 149 13-177 214-371 (449)
164 PRK15467 ethanolamine utilizat 99.9 1.8E-21 3.9E-26 142.0 14.1 140 16-177 3-148 (158)
165 PRK03003 GTP-binding protein D 99.9 1.5E-21 3.4E-26 165.3 15.7 154 13-177 37-200 (472)
166 COG1160 Predicted GTPases [Gen 99.9 2E-21 4.4E-26 157.8 15.5 205 13-223 177-404 (444)
167 cd01894 EngA1 EngA1 subfamily. 99.9 1.1E-21 2.3E-26 142.7 12.7 146 18-174 1-156 (157)
168 PRK11058 GTPase HflX; Provisio 99.9 3.3E-21 7.2E-26 160.2 16.8 158 14-177 197-363 (426)
169 PRK12296 obgE GTPase CgtA; Rev 99.9 4.7E-21 1E-25 160.4 17.0 164 13-179 158-343 (500)
170 TIGR00487 IF-2 translation ini 99.9 1.4E-20 3E-25 161.8 18.8 154 11-172 84-246 (587)
171 cd01895 EngA2 EngA2 subfamily. 99.9 8.8E-21 1.9E-25 139.9 15.2 155 14-174 2-173 (174)
172 cd04163 Era Era subfamily. Er 99.9 1.1E-20 2.4E-25 138.3 15.3 156 14-174 3-167 (168)
173 PRK00454 engB GTP-binding prot 99.9 1.8E-20 4E-25 141.4 16.6 156 11-175 21-193 (196)
174 cd01888 eIF2_gamma eIF2-gamma 99.9 7.1E-21 1.5E-25 144.5 14.0 155 15-175 1-198 (203)
175 TIGR00475 selB selenocysteine- 99.9 1.4E-20 3E-25 162.4 17.4 152 15-175 1-165 (581)
176 PRK12298 obgE GTPase CgtA; Rev 99.9 2.3E-20 5E-25 153.6 17.5 161 15-177 160-334 (390)
177 TIGR03598 GTPase_YsxC ribosome 99.9 1.2E-20 2.6E-25 140.6 14.2 149 10-165 14-179 (179)
178 KOG0075 GTP-binding ADP-ribosy 99.9 3.6E-21 7.8E-26 132.6 10.2 154 13-175 19-181 (186)
179 PRK00089 era GTPase Era; Revie 99.9 2.8E-20 6.2E-25 148.9 15.8 156 14-175 5-170 (292)
180 CHL00189 infB translation init 99.9 3.5E-20 7.6E-25 161.7 17.4 154 11-174 241-408 (742)
181 PRK05306 infB translation init 99.9 4.2E-20 9.2E-25 162.5 17.7 154 11-173 287-449 (787)
182 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 4.4E-21 9.5E-26 137.7 9.2 163 12-177 8-170 (216)
183 PRK05433 GTP-binding protein L 99.8 9.2E-20 2E-24 157.6 17.3 158 12-175 5-183 (600)
184 PF00009 GTP_EFTU: Elongation 99.8 1.8E-20 4E-25 140.6 11.3 159 13-175 2-186 (188)
185 TIGR00437 feoB ferrous iron tr 99.8 6.7E-20 1.4E-24 158.3 15.8 146 21-175 1-154 (591)
186 PRK00093 GTP-binding protein D 99.8 1.5E-19 3.3E-24 152.3 17.3 146 15-173 2-159 (435)
187 cd00880 Era_like Era (E. coli 99.8 1E-19 2.3E-24 131.9 13.7 151 19-174 1-162 (163)
188 COG1159 Era GTPase [General fu 99.8 1.1E-19 2.3E-24 140.5 14.2 158 13-175 5-171 (298)
189 TIGR03594 GTPase_EngA ribosome 99.8 8.9E-20 1.9E-24 153.4 15.0 147 16-175 1-159 (429)
190 PRK09554 feoB ferrous iron tra 99.8 5.5E-19 1.2E-23 156.1 18.4 153 14-175 3-167 (772)
191 TIGR00491 aIF-2 translation in 99.8 5.8E-19 1.3E-23 151.7 17.4 155 14-175 4-215 (590)
192 cd01896 DRG The developmentall 99.8 1.6E-18 3.5E-23 134.0 18.2 151 16-175 2-225 (233)
193 PRK09518 bifunctional cytidyla 99.8 5.3E-19 1.2E-23 156.4 17.3 155 12-177 273-437 (712)
194 KOG4423 GTP-binding protein-li 99.8 4.4E-22 9.5E-27 142.4 -2.7 167 11-177 22-195 (229)
195 TIGR00483 EF-1_alpha translati 99.8 2.8E-19 6E-24 150.0 13.3 159 10-169 3-200 (426)
196 PF10662 PduV-EutP: Ethanolami 99.8 5.7E-19 1.2E-23 124.1 12.8 134 16-172 3-142 (143)
197 PRK12317 elongation factor 1-a 99.8 2.4E-19 5.2E-24 150.4 12.9 157 11-169 3-198 (425)
198 KOG0071 GTP-binding ADP-ribosy 99.8 1.7E-18 3.7E-23 118.5 14.5 156 13-175 16-177 (180)
199 cd04105 SR_beta Signal recogni 99.8 7E-19 1.5E-23 133.4 13.2 117 16-133 2-123 (203)
200 COG0486 ThdF Predicted GTPase 99.8 8.1E-19 1.8E-23 143.1 14.2 155 12-178 215-378 (454)
201 cd01876 YihA_EngB The YihA (En 99.8 1.8E-18 3.9E-23 126.9 14.2 150 16-174 1-169 (170)
202 KOG0076 GTP-binding ADP-ribosy 99.8 1.8E-19 3.9E-24 127.7 8.3 162 11-178 14-189 (197)
203 COG1160 Predicted GTPases [Gen 99.8 4.6E-19 1E-23 144.1 11.9 149 15-175 4-164 (444)
204 cd04166 CysN_ATPS CysN_ATPS su 99.8 7.8E-19 1.7E-23 133.8 11.9 149 16-167 1-185 (208)
205 PRK10218 GTP-binding protein; 99.8 4.4E-18 9.6E-23 146.7 17.4 159 13-175 4-194 (607)
206 COG2229 Predicted GTPase [Gene 99.8 1.1E-17 2.5E-22 120.2 16.6 158 11-174 7-176 (187)
207 TIGR01394 TypA_BipA GTP-bindin 99.8 1.6E-18 3.6E-23 149.4 14.6 157 15-175 2-190 (594)
208 KOG1423 Ras-like GTPase ERA [C 99.8 3.7E-18 7.9E-23 131.7 14.3 164 7-175 65-270 (379)
209 PRK04004 translation initiatio 99.8 9.5E-18 2.1E-22 144.7 18.3 156 13-175 5-217 (586)
210 cd01884 EF_Tu EF-Tu subfamily. 99.8 8.2E-18 1.8E-22 126.5 15.7 148 14-165 2-172 (195)
211 PRK04000 translation initiatio 99.8 2.8E-18 6E-23 142.8 14.0 162 8-175 3-200 (411)
212 PRK10512 selenocysteinyl-tRNA- 99.8 8.2E-18 1.8E-22 145.8 17.4 152 16-175 2-165 (614)
213 TIGR03680 eif2g_arch translati 99.8 2.9E-18 6.4E-23 142.7 14.0 162 12-175 2-195 (406)
214 cd04168 TetM_like Tet(M)-like 99.8 5.2E-18 1.1E-22 131.3 13.2 114 16-133 1-130 (237)
215 cd04167 Snu114p Snu114p subfam 99.8 6.3E-18 1.4E-22 129.3 12.5 113 16-132 2-136 (213)
216 PRK12736 elongation factor Tu; 99.8 2.6E-17 5.6E-22 136.6 15.3 150 9-162 7-179 (394)
217 COG2262 HflX GTPases [General 99.8 5.2E-17 1.1E-21 130.5 15.9 162 10-178 188-358 (411)
218 PRK12735 elongation factor Tu; 99.8 3.7E-17 8E-22 135.7 15.3 154 6-163 4-180 (396)
219 COG0218 Predicted GTPase [Gene 99.7 9.3E-17 2E-21 118.0 15.2 158 10-176 20-197 (200)
220 TIGR00485 EF-Tu translation el 99.7 3.9E-17 8.4E-22 135.6 14.8 155 9-167 7-185 (394)
221 KOG1707 Predicted Ras related/ 99.7 8.4E-18 1.8E-22 139.5 9.9 162 12-175 7-174 (625)
222 COG0370 FeoB Fe2+ transport sy 99.7 8.4E-17 1.8E-21 136.6 15.8 153 14-175 3-163 (653)
223 KOG0074 GTP-binding ADP-ribosy 99.7 3E-17 6.5E-22 112.6 10.6 158 10-173 13-176 (185)
224 cd01883 EF1_alpha Eukaryotic e 99.7 1.7E-17 3.6E-22 127.4 10.5 147 16-165 1-194 (219)
225 COG1084 Predicted GTPase [Gene 99.7 8.5E-17 1.8E-21 125.7 13.8 161 9-175 163-335 (346)
226 KOG0072 GTP-binding ADP-ribosy 99.7 6.9E-18 1.5E-22 116.1 6.4 158 12-176 16-179 (182)
227 cd04165 GTPBP1_like GTPBP1-lik 99.7 2.3E-16 4.9E-21 121.1 15.1 153 16-172 1-219 (224)
228 COG0532 InfB Translation initi 99.7 5.1E-16 1.1E-20 128.5 17.2 153 13-175 4-169 (509)
229 cd04104 p47_IIGP_like p47 (47- 99.7 5.6E-16 1.2E-20 117.1 16.2 161 14-182 1-190 (197)
230 CHL00071 tufA elongation facto 99.7 3.1E-16 6.6E-21 130.8 16.0 154 7-164 5-181 (409)
231 COG1163 DRG Predicted GTPase [ 99.7 6.8E-16 1.5E-20 120.3 15.5 155 12-175 61-288 (365)
232 KOG1489 Predicted GTP-binding 99.7 3.2E-16 7E-21 121.6 13.5 157 14-174 196-365 (366)
233 PLN00043 elongation factor 1-a 99.7 7.2E-16 1.6E-20 129.4 15.4 152 11-166 4-203 (447)
234 cd01850 CDC_Septin CDC/Septin. 99.7 8.8E-16 1.9E-20 121.4 14.9 143 13-160 3-186 (276)
235 KOG0462 Elongation factor-type 99.7 3.9E-16 8.4E-21 128.8 13.2 161 11-175 57-234 (650)
236 PRK00049 elongation factor Tu; 99.7 1.4E-15 3E-20 126.3 16.4 154 6-163 4-180 (396)
237 cd04169 RF3 RF3 subfamily. Pe 99.7 1.5E-15 3.3E-20 119.5 15.4 116 15-134 3-138 (267)
238 cd01885 EF2 EF2 (for archaea a 99.7 5.5E-16 1.2E-20 118.6 12.5 113 16-132 2-138 (222)
239 PRK05124 cysN sulfate adenylyl 99.7 5.3E-16 1.1E-20 131.2 13.5 156 10-168 23-217 (474)
240 KOG3905 Dynein light intermedi 99.7 1.4E-15 2.9E-20 118.6 14.4 163 13-178 51-292 (473)
241 PLN03126 Elongation factor Tu; 99.7 1.6E-15 3.5E-20 127.9 15.8 151 10-164 77-250 (478)
242 TIGR02034 CysN sulfate adenyly 99.7 7.3E-16 1.6E-20 128.4 13.1 150 15-167 1-188 (406)
243 PTZ00141 elongation factor 1- 99.7 2E-15 4.4E-20 126.8 15.1 152 11-166 4-203 (446)
244 cd04170 EF-G_bact Elongation f 99.7 5.2E-16 1.1E-20 122.7 9.8 144 16-165 1-162 (268)
245 PLN03127 Elongation factor Tu; 99.7 5.1E-15 1.1E-19 124.2 16.1 161 9-173 56-249 (447)
246 cd01886 EF-G Elongation factor 99.7 1.4E-15 3.1E-20 119.8 11.8 114 16-133 1-130 (270)
247 PRK00741 prfC peptide chain re 99.7 4.5E-15 9.7E-20 126.7 15.1 118 12-133 8-145 (526)
248 PF04670 Gtr1_RagA: Gtr1/RagA 99.6 2E-15 4.4E-20 115.5 11.4 159 16-177 1-177 (232)
249 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 8E-15 1.7E-19 110.7 14.2 158 15-175 1-183 (196)
250 KOG1145 Mitochondrial translat 99.6 1.2E-14 2.6E-19 120.2 16.2 150 12-172 151-312 (683)
251 PRK13351 elongation factor G; 99.6 3.4E-15 7.4E-20 132.2 14.0 118 12-133 6-139 (687)
252 COG0536 Obg Predicted GTPase [ 99.6 4.8E-15 1E-19 116.5 13.2 165 14-179 159-336 (369)
253 PRK05506 bifunctional sulfate 99.6 4.5E-15 9.7E-20 130.2 14.1 154 10-166 20-211 (632)
254 cd01899 Ygr210 Ygr210 subfamil 99.6 9.8E-15 2.1E-19 117.2 14.7 81 17-97 1-110 (318)
255 COG3596 Predicted GTPase [Gene 99.6 2.8E-15 6.1E-20 114.7 9.9 162 11-176 36-222 (296)
256 TIGR00503 prfC peptide chain r 99.6 1.7E-14 3.7E-19 123.2 15.9 118 11-132 8-145 (527)
257 PTZ00327 eukaryotic translatio 99.6 7.1E-15 1.5E-19 123.3 13.3 163 10-175 30-232 (460)
258 PF01926 MMR_HSR1: 50S ribosom 99.6 2E-14 4.4E-19 99.3 13.4 106 16-128 1-116 (116)
259 COG0481 LepA Membrane GTPase L 99.6 2.7E-14 6E-19 116.4 15.6 160 10-175 5-185 (603)
260 KOG1191 Mitochondrial GTPase [ 99.6 3.2E-15 7E-20 122.2 9.3 167 11-178 265-452 (531)
261 COG5256 TEF1 Translation elong 99.6 1.6E-14 3.4E-19 116.3 11.3 190 11-206 4-236 (428)
262 COG4917 EutP Ethanolamine util 99.6 1.2E-14 2.6E-19 98.0 8.9 135 16-173 3-143 (148)
263 PF05783 DLIC: Dynein light in 99.6 4E-14 8.8E-19 118.5 13.8 165 12-179 23-267 (472)
264 PRK12739 elongation factor G; 99.6 6.7E-14 1.5E-18 123.8 15.5 117 11-133 5-139 (691)
265 PRK09866 hypothetical protein; 99.6 3.1E-13 6.7E-18 115.0 18.2 108 64-173 231-350 (741)
266 TIGR00484 EF-G translation elo 99.6 5E-14 1.1E-18 124.7 13.1 120 11-134 7-142 (689)
267 PRK00007 elongation factor G; 99.5 2.8E-13 6E-18 119.9 16.4 119 11-133 7-141 (693)
268 PRK09602 translation-associate 99.5 3.5E-13 7.7E-18 111.4 15.3 83 15-97 2-113 (396)
269 TIGR00490 aEF-2 translation el 99.5 4E-14 8.6E-19 125.6 9.1 126 4-133 9-152 (720)
270 PF09439 SRPRB: Signal recogni 99.5 1.7E-14 3.6E-19 106.0 5.2 117 14-134 3-127 (181)
271 PRK14845 translation initiatio 99.5 7.3E-13 1.6E-17 119.8 16.6 143 26-175 473-672 (1049)
272 KOG1490 GTP-binding protein CR 99.5 3.1E-13 6.7E-18 110.9 11.9 179 9-190 163-355 (620)
273 PRK12740 elongation factor G; 99.5 7E-13 1.5E-17 117.3 14.8 110 20-133 1-126 (668)
274 TIGR00991 3a0901s02IAP34 GTP-b 99.5 6.6E-13 1.4E-17 105.0 13.0 122 10-134 34-168 (313)
275 KOG0077 Vesicle coat complex C 99.5 1.4E-13 3E-18 97.3 8.2 155 12-173 18-190 (193)
276 cd01853 Toc34_like Toc34-like 99.5 5.5E-13 1.2E-17 103.8 12.5 123 9-134 26-164 (249)
277 KOG1707 Predicted Ras related/ 99.5 1.5E-12 3.3E-17 108.6 14.4 163 7-175 418-582 (625)
278 KOG1144 Translation initiation 99.5 5.5E-13 1.2E-17 113.7 11.7 169 13-188 474-699 (1064)
279 smart00010 small_GTPase Small 99.5 4.7E-13 1E-17 93.2 9.3 114 15-165 1-115 (124)
280 COG2895 CysN GTPases - Sulfate 99.5 9.9E-13 2.1E-17 103.8 11.7 153 11-166 3-193 (431)
281 KOG0090 Signal recognition par 99.4 9.8E-13 2.1E-17 97.0 9.8 155 14-174 38-237 (238)
282 PF04548 AIG1: AIG1 family; I 99.4 1.7E-12 3.8E-17 99.1 11.4 160 15-178 1-188 (212)
283 TIGR00157 ribosome small subun 99.4 1.6E-12 3.5E-17 101.2 10.9 96 74-173 24-120 (245)
284 PTZ00258 GTP-binding protein; 99.4 4.8E-12 1E-16 103.8 13.7 87 11-97 18-126 (390)
285 PRK07560 elongation factor EF- 99.4 2.8E-12 6E-17 114.2 12.8 123 7-133 13-153 (731)
286 TIGR00101 ureG urease accessor 99.4 4.9E-12 1.1E-16 95.4 12.1 102 63-175 92-195 (199)
287 PLN00116 translation elongatio 99.4 1.1E-12 2.3E-17 118.3 9.2 122 7-132 12-163 (843)
288 KOG0458 Elongation factor 1 al 99.4 6.5E-12 1.4E-16 105.0 12.7 202 11-215 174-419 (603)
289 cd00066 G-alpha G protein alph 99.4 2.8E-11 6.1E-16 97.7 15.6 118 61-178 159-313 (317)
290 PRK13768 GTPase; Provisional 99.4 4.3E-12 9.3E-17 99.3 10.1 109 64-175 98-246 (253)
291 PTZ00416 elongation factor 2; 99.4 2.3E-12 4.9E-17 116.0 9.3 120 9-132 14-157 (836)
292 TIGR00073 hypB hydrogenase acc 99.3 2.9E-11 6.2E-16 92.1 12.0 150 11-174 19-205 (207)
293 PRK09601 GTP-binding protein Y 99.3 5.3E-11 1.2E-15 96.6 13.9 83 15-97 3-107 (364)
294 PF00350 Dynamin_N: Dynamin fa 99.3 3.5E-11 7.5E-16 88.5 11.7 62 65-129 103-168 (168)
295 PRK09435 membrane ATPase/prote 99.3 5.7E-11 1.2E-15 95.8 13.7 104 62-176 148-260 (332)
296 KOG1532 GTPase XAB1, interacts 99.3 1E-10 2.2E-15 89.7 14.0 169 10-180 15-268 (366)
297 smart00275 G_alpha G protein a 99.3 1E-10 2.2E-15 95.3 14.7 117 63-179 184-337 (342)
298 COG1217 TypA Predicted membran 99.3 4.1E-11 8.8E-16 97.9 12.1 159 13-175 4-194 (603)
299 PF05049 IIGP: Interferon-indu 99.3 2.3E-11 5E-16 98.8 10.3 163 11-181 32-223 (376)
300 KOG1486 GTP-binding protein DR 99.3 2.7E-10 5.8E-15 86.4 14.8 106 14-121 62-175 (364)
301 cd01882 BMS1 Bms1. Bms1 is an 99.3 1.1E-10 2.4E-15 89.9 13.0 140 12-163 37-183 (225)
302 TIGR02836 spore_IV_A stage IV 99.3 1E-10 2.2E-15 95.2 13.1 162 4-170 7-231 (492)
303 KOG0461 Selenocysteine-specifi 99.3 1.4E-10 3.1E-15 91.6 13.3 161 11-175 4-192 (522)
304 PF03029 ATP_bind_1: Conserved 99.3 1E-12 2.2E-17 101.6 0.7 111 64-174 92-235 (238)
305 PF00735 Septin: Septin; Inte 99.2 1.3E-10 2.7E-15 92.1 12.1 139 13-155 3-180 (281)
306 COG3276 SelB Selenocysteine-sp 99.2 2.7E-10 5.9E-15 92.8 12.0 157 16-176 2-162 (447)
307 KOG0705 GTPase-activating prot 99.2 8.6E-11 1.9E-15 97.6 8.8 168 11-185 27-198 (749)
308 COG5257 GCD11 Translation init 99.2 1E-10 2.2E-15 91.6 8.3 162 12-175 8-201 (415)
309 KOG3886 GTP-binding protein [S 99.2 1.6E-10 3.4E-15 86.5 8.9 145 14-160 4-163 (295)
310 TIGR00993 3a0901s04IAP86 chlor 99.2 4.3E-10 9.4E-15 96.5 11.8 120 12-133 116-250 (763)
311 KOG0468 U5 snRNP-specific prot 99.2 2E-10 4.4E-15 97.4 9.4 126 2-131 116-261 (971)
312 TIGR00750 lao LAO/AO transport 99.1 1.2E-09 2.6E-14 87.7 13.4 104 62-176 126-238 (300)
313 smart00053 DYNc Dynamin, GTPas 99.1 9.9E-10 2.2E-14 84.8 12.0 68 63-133 125-206 (240)
314 COG0012 Predicted GTPase, prob 99.1 3E-09 6.5E-14 85.5 15.0 84 14-97 2-108 (372)
315 COG0480 FusA Translation elong 99.1 8.1E-10 1.7E-14 96.8 12.3 120 11-134 7-143 (697)
316 KOG0410 Predicted GTP binding 99.1 9.9E-11 2.1E-15 91.7 5.9 159 13-183 177-348 (410)
317 PF03308 ArgK: ArgK protein; 99.1 2.6E-10 5.7E-15 87.5 6.6 153 12-176 27-230 (266)
318 COG0378 HypB Ni2+-binding GTPa 99.1 1.1E-09 2.4E-14 80.3 9.2 79 89-175 120-200 (202)
319 COG0050 TufB GTPases - transla 99.0 4.1E-09 8.9E-14 81.8 11.5 144 7-159 5-176 (394)
320 COG5019 CDC3 Septin family pro 99.0 4.7E-09 1E-13 83.9 12.3 118 11-133 20-176 (373)
321 cd01900 YchF YchF subfamily. 99.0 6.9E-10 1.5E-14 87.3 7.2 81 17-97 1-103 (274)
322 COG1703 ArgK Putative periplas 99.0 3.4E-09 7.5E-14 82.6 9.6 154 12-176 49-254 (323)
323 PRK10463 hydrogenase nickel in 99.0 1.4E-09 3.1E-14 85.6 7.4 56 119-174 230-287 (290)
324 KOG0082 G-protein alpha subuni 99.0 7.8E-09 1.7E-13 83.2 11.4 118 63-180 195-348 (354)
325 KOG2655 Septin family protein 99.0 2E-08 4.4E-13 80.8 12.8 145 12-161 19-202 (366)
326 cd01859 MJ1464 MJ1464. This f 98.9 3.1E-09 6.7E-14 77.2 7.4 95 76-176 2-96 (156)
327 PRK12289 GTPase RsgA; Reviewed 98.9 9E-09 1.9E-13 84.0 10.8 92 78-174 81-173 (352)
328 cd01855 YqeH YqeH. YqeH is an 98.9 6E-09 1.3E-13 78.2 9.1 93 76-175 24-124 (190)
329 KOG1547 Septin CDC10 and relat 98.9 2.7E-08 5.8E-13 75.2 10.9 151 14-169 46-236 (336)
330 TIGR03348 VI_IcmF type VI secr 98.9 2.5E-08 5.5E-13 93.2 12.7 113 17-134 114-258 (1169)
331 KOG1487 GTP-binding protein DR 98.9 2.1E-08 4.6E-13 76.6 9.7 89 15-105 60-155 (358)
332 cd01854 YjeQ_engC YjeQ/EngC. 98.9 1.2E-08 2.5E-13 81.5 8.7 88 81-173 73-161 (287)
333 COG4108 PrfC Peptide chain rel 98.9 1.7E-08 3.7E-13 82.3 9.6 116 14-133 12-147 (528)
334 KOG3887 Predicted small GTPase 98.9 4.1E-08 8.8E-13 74.3 10.9 170 14-185 27-211 (347)
335 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 7E-09 1.5E-13 74.1 6.4 54 16-73 85-138 (141)
336 KOG1954 Endocytosis/signaling 98.8 3.9E-08 8.4E-13 78.7 10.6 127 7-136 51-228 (532)
337 KOG1143 Predicted translation 98.8 1E-08 2.2E-13 82.1 6.6 161 7-171 160-383 (591)
338 COG5258 GTPBP1 GTPase [General 98.8 7.2E-08 1.6E-12 77.6 11.4 157 11-171 114-334 (527)
339 cd04178 Nucleostemin_like Nucl 98.8 1.3E-08 2.9E-13 75.0 6.8 58 12-73 115-172 (172)
340 cd01858 NGP_1 NGP-1. Autoanti 98.8 1.6E-08 3.4E-13 73.6 7.2 57 13-73 101-157 (157)
341 PRK00098 GTPase RsgA; Reviewed 98.8 1.9E-08 4E-13 80.8 8.1 87 83-173 77-164 (298)
342 PRK12288 GTPase RsgA; Reviewed 98.8 2.9E-08 6.3E-13 81.0 9.2 88 84-174 118-206 (347)
343 COG5192 BMS1 GTP-binding prote 98.7 1E-07 2.2E-12 80.2 10.6 140 10-161 65-211 (1077)
344 PF00503 G-alpha: G-protein al 98.7 1.9E-07 4.2E-12 77.8 12.1 112 63-174 236-388 (389)
345 TIGR03597 GTPase_YqeH ribosome 98.7 5.8E-08 1.3E-12 79.9 8.5 95 73-174 50-151 (360)
346 COG3523 IcmF Type VI protein s 98.7 7.9E-08 1.7E-12 88.1 9.9 164 18-189 129-331 (1188)
347 KOG0448 Mitofusin 1 GTPase, in 98.7 4.6E-07 9.9E-12 77.8 13.3 119 12-134 107-276 (749)
348 KOG2486 Predicted GTPase [Gene 98.7 3.9E-08 8.4E-13 75.9 6.3 155 10-173 132-313 (320)
349 COG1618 Predicted nucleotide k 98.7 1.9E-06 4.1E-11 61.6 14.2 147 12-175 3-175 (179)
350 cd01856 YlqF YlqF. Proteins o 98.7 7.4E-08 1.6E-12 71.1 6.8 58 12-73 113-170 (171)
351 TIGR00092 GTP-binding protein 98.7 1.1E-07 2.3E-12 77.6 8.1 83 15-97 3-108 (368)
352 TIGR03596 GTPase_YlqF ribosome 98.6 1E-07 2.2E-12 75.8 7.4 58 12-73 116-173 (276)
353 PF03193 DUF258: Protein of un 98.6 3.5E-08 7.6E-13 71.3 4.3 59 15-76 36-100 (161)
354 KOG0467 Translation elongation 98.6 8.5E-08 1.9E-12 82.9 7.2 118 10-131 5-136 (887)
355 cd01855 YqeH YqeH. YqeH is an 98.6 6.9E-08 1.5E-12 72.5 5.9 57 14-73 127-190 (190)
356 PRK09563 rbgA GTPase YlqF; Rev 98.6 1.7E-07 3.7E-12 74.9 8.1 59 12-74 119-177 (287)
357 cd01859 MJ1464 MJ1464. This f 98.6 1.7E-07 3.7E-12 68.0 7.2 56 13-72 100-155 (156)
358 KOG1491 Predicted GTP-binding 98.6 8.7E-08 1.9E-12 75.9 5.7 89 9-97 15-125 (391)
359 cd01858 NGP_1 NGP-1. Autoanti 98.6 2.6E-07 5.6E-12 67.2 7.5 88 83-175 5-94 (157)
360 COG1161 Predicted GTPases [Gen 98.6 1.6E-07 3.4E-12 76.1 6.6 58 13-74 131-188 (322)
361 cd01849 YlqF_related_GTPase Yl 98.5 5.9E-07 1.3E-11 65.1 8.2 85 88-176 1-85 (155)
362 KOG0447 Dynamin-like GTP bindi 98.5 3.4E-06 7.3E-11 71.1 13.4 139 6-147 300-507 (980)
363 cd01851 GBP Guanylate-binding 98.5 3.7E-06 8.1E-11 64.7 12.5 88 11-99 4-104 (224)
364 cd01849 YlqF_related_GTPase Yl 98.5 4.4E-07 9.6E-12 65.8 6.9 58 12-73 98-155 (155)
365 KOG0464 Elongation factor G [T 98.5 2.3E-07 5E-12 75.5 5.1 119 12-134 35-169 (753)
366 KOG0460 Mitochondrial translat 98.5 1.6E-06 3.4E-11 69.0 9.6 148 9-159 49-218 (449)
367 PRK12288 GTPase RsgA; Reviewed 98.5 3.2E-07 6.9E-12 74.9 6.0 58 17-77 208-271 (347)
368 PRK10416 signal recognition pa 98.5 2.4E-06 5.3E-11 69.0 10.9 149 14-174 114-308 (318)
369 KOG0463 GTP-binding protein GP 98.4 5.7E-07 1.2E-11 72.4 6.5 156 9-169 128-351 (641)
370 cd01856 YlqF YlqF. Proteins o 98.4 1.1E-06 2.3E-11 64.9 7.5 91 78-176 11-101 (171)
371 PRK12289 GTPase RsgA; Reviewed 98.4 4.3E-07 9.3E-12 74.2 5.7 56 17-75 175-236 (352)
372 COG1162 Predicted GTPases [Gen 98.4 5.1E-07 1.1E-11 71.2 5.4 59 16-77 166-230 (301)
373 TIGR00064 ftsY signal recognit 98.4 3E-06 6.6E-11 67.0 9.6 101 62-174 154-266 (272)
374 KOG4273 Uncharacterized conser 98.4 5.8E-06 1.3E-10 63.2 10.5 156 15-177 5-223 (418)
375 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 1.6E-06 3.4E-11 61.9 7.1 76 81-162 6-83 (141)
376 PRK14974 cell division protein 98.4 7.9E-06 1.7E-10 66.4 11.8 100 63-175 223-329 (336)
377 TIGR00157 ribosome small subun 98.3 1.2E-06 2.7E-11 68.3 5.7 58 15-76 121-184 (245)
378 TIGR03596 GTPase_YlqF ribosome 98.3 4.2E-06 9.1E-11 66.6 8.8 100 71-178 5-105 (276)
379 PRK13796 GTPase YqeH; Provisio 98.3 4.4E-06 9.5E-11 69.0 9.2 94 74-174 57-157 (365)
380 PRK13796 GTPase YqeH; Provisio 98.3 1.4E-06 3E-11 71.9 5.7 57 15-74 161-221 (365)
381 KOG0465 Mitochondrial elongati 98.3 1.6E-06 3.6E-11 73.6 5.7 116 12-131 37-168 (721)
382 TIGR03597 GTPase_YqeH ribosome 98.2 2.6E-06 5.6E-11 70.3 6.5 58 15-75 155-216 (360)
383 PF09547 Spore_IV_A: Stage IV 98.2 3.1E-05 6.7E-10 63.8 12.5 160 6-170 9-231 (492)
384 PRK01889 GTPase RsgA; Reviewed 98.2 6E-06 1.3E-10 67.9 8.6 83 84-172 110-193 (356)
385 cd03112 CobW_like The function 98.2 8.6E-06 1.9E-10 59.3 8.2 64 62-131 86-158 (158)
386 PRK09563 rbgA GTPase YlqF; Rev 98.2 6.4E-06 1.4E-10 65.9 7.8 100 70-177 7-107 (287)
387 cd01854 YjeQ_engC YjeQ/EngC. 98.2 3.1E-06 6.8E-11 67.6 5.9 59 15-76 162-226 (287)
388 KOG0085 G protein subunit Galp 98.2 1.6E-06 3.6E-11 65.4 3.9 120 61-180 197-353 (359)
389 PRK00098 GTPase RsgA; Reviewed 98.2 4E-06 8.6E-11 67.4 6.0 58 15-75 165-228 (298)
390 KOG0099 G protein subunit Galp 98.1 3.3E-05 7.2E-10 59.5 9.1 116 61-176 200-369 (379)
391 KOG0466 Translation initiation 98.1 2.4E-06 5.3E-11 67.0 3.0 160 10-175 34-240 (466)
392 TIGR01425 SRP54_euk signal rec 98.1 3.4E-05 7.4E-10 64.5 9.9 85 62-156 182-272 (429)
393 PRK13695 putative NTPase; Prov 98.1 0.00012 2.5E-09 54.2 11.9 79 83-175 93-172 (174)
394 PRK14722 flhF flagellar biosyn 98.1 6.5E-05 1.4E-09 61.8 11.3 139 15-157 138-315 (374)
395 KOG3859 Septins (P-loop GTPase 98.1 1.3E-05 2.9E-10 62.2 6.7 61 12-72 40-104 (406)
396 PF00448 SRP54: SRP54-type pro 98.1 4.3E-05 9.3E-10 57.6 9.2 85 63-158 84-175 (196)
397 KOG1424 Predicted GTP-binding 98.0 7.2E-06 1.6E-10 68.5 5.0 57 12-72 312-368 (562)
398 COG1126 GlnQ ABC-type polar am 98.0 5.5E-06 1.2E-10 62.2 3.9 42 137-178 143-186 (240)
399 PF03266 NTPase_1: NTPase; In 98.0 2.4E-05 5.2E-10 57.4 7.1 136 16-164 1-163 (168)
400 cd03115 SRP The signal recogni 98.0 4.7E-05 1E-09 56.2 8.2 83 62-154 82-170 (173)
401 KOG0469 Elongation factor 2 [T 98.0 0.0001 2.2E-09 61.8 10.5 197 9-211 14-266 (842)
402 KOG0459 Polypeptide release fa 97.9 3.4E-05 7.4E-10 62.9 6.7 155 11-169 76-279 (501)
403 PRK14721 flhF flagellar biosyn 97.9 0.00024 5.1E-09 59.5 11.7 139 14-164 191-365 (420)
404 COG1162 Predicted GTPases [Gen 97.9 0.00013 2.9E-09 57.7 9.4 88 84-174 77-165 (301)
405 PRK11889 flhF flagellar biosyn 97.9 0.00023 4.9E-09 58.8 11.0 134 14-157 241-411 (436)
406 PRK00771 signal recognition pa 97.9 4.1E-05 9E-10 64.4 6.9 84 64-157 177-266 (437)
407 TIGR00959 ffh signal recogniti 97.8 0.00017 3.6E-09 60.7 9.7 87 62-158 182-274 (428)
408 COG1419 FlhF Flagellar GTP-bin 97.8 0.00065 1.4E-08 56.0 12.7 133 14-156 203-371 (407)
409 PRK12727 flagellar biosynthesi 97.8 0.00068 1.5E-08 58.1 13.1 135 14-158 350-519 (559)
410 COG0523 Putative GTPases (G3E 97.8 0.00036 7.7E-09 56.5 10.6 98 63-168 85-193 (323)
411 PRK10867 signal recognition pa 97.7 0.0007 1.5E-08 57.0 12.0 87 62-158 183-275 (433)
412 KOG2484 GTPase [General functi 97.7 4E-05 8.7E-10 62.3 3.6 57 12-72 250-306 (435)
413 PF02492 cobW: CobW/HypB/UreG, 97.7 0.00022 4.7E-09 52.9 7.2 80 63-149 85-170 (178)
414 PF06858 NOG1: Nucleolar GTP-b 97.7 0.00018 3.8E-09 42.3 5.2 44 86-130 13-58 (58)
415 PRK11537 putative GTP-binding 97.7 0.0011 2.3E-08 53.8 11.7 85 63-157 91-186 (318)
416 cd03114 ArgK-like The function 97.7 0.00055 1.2E-08 49.2 9.1 58 62-130 91-148 (148)
417 PRK14723 flhF flagellar biosyn 97.6 0.00083 1.8E-08 60.0 11.7 144 15-168 186-367 (767)
418 PRK12726 flagellar biosynthesi 97.6 0.00073 1.6E-08 55.7 10.2 86 63-158 286-377 (407)
419 PRK05703 flhF flagellar biosyn 97.6 0.00063 1.4E-08 57.4 10.1 86 63-158 300-392 (424)
420 KOG2485 Conserved ATP/GTP bind 97.6 0.00011 2.4E-09 58.0 5.2 62 11-73 140-206 (335)
421 cd00009 AAA The AAA+ (ATPases 97.6 0.00055 1.2E-08 48.2 8.4 25 14-38 19-43 (151)
422 COG3640 CooC CO dehydrogenase 97.6 0.00088 1.9E-08 51.1 9.6 62 65-132 136-198 (255)
423 PF11111 CENP-M: Centromere pr 97.6 0.0047 1E-07 45.0 12.8 139 11-173 12-150 (176)
424 cd02038 FleN-like FleN is a me 97.6 0.00044 9.4E-09 49.1 7.4 107 18-132 4-110 (139)
425 cd02042 ParA ParA and ParB of 97.6 0.00072 1.6E-08 45.3 8.0 82 17-110 2-84 (104)
426 PRK12724 flagellar biosynthesi 97.5 0.0004 8.6E-09 57.9 7.6 134 15-158 224-394 (432)
427 PF13555 AAA_29: P-loop contai 97.5 9.8E-05 2.1E-09 44.4 3.0 22 16-37 25-46 (62)
428 COG0563 Adk Adenylate kinase a 97.5 9.4E-05 2E-09 54.8 3.1 23 15-37 1-23 (178)
429 PRK06731 flhF flagellar biosyn 97.5 0.0024 5.3E-08 50.5 10.9 134 14-157 75-245 (270)
430 PF13207 AAA_17: AAA domain; P 97.4 0.00012 2.6E-09 50.5 3.1 22 16-37 1-22 (121)
431 PRK06995 flhF flagellar biosyn 97.4 0.0011 2.5E-08 56.4 9.4 141 15-167 257-434 (484)
432 PRK12723 flagellar biosynthesi 97.4 0.0022 4.7E-08 53.4 10.8 91 62-164 254-351 (388)
433 PRK08118 topology modulation p 97.4 0.00012 2.7E-09 53.7 3.1 22 16-37 3-24 (167)
434 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.4 0.0026 5.6E-08 45.5 9.9 22 16-37 28-49 (144)
435 cd01983 Fer4_NifH The Fer4_Nif 97.4 0.0016 3.6E-08 42.5 8.3 69 17-99 2-71 (99)
436 PF05621 TniB: Bacterial TniB 97.4 0.0011 2.3E-08 52.8 8.1 105 10-128 57-189 (302)
437 PRK07261 topology modulation p 97.4 0.00015 3.3E-09 53.4 3.1 22 16-37 2-23 (171)
438 PF13671 AAA_33: AAA domain; P 97.4 0.00015 3.3E-09 51.5 2.9 20 17-36 2-21 (143)
439 COG3845 ABC-type uncharacteriz 97.4 0.0014 3E-08 55.1 8.7 53 76-130 148-201 (501)
440 KOG1534 Putative transcription 97.3 0.00095 2.1E-08 50.1 6.9 22 15-36 4-25 (273)
441 COG4598 HisP ABC-type histidin 97.3 0.00075 1.6E-08 49.6 5.9 142 16-180 34-204 (256)
442 PRK01889 GTPase RsgA; Reviewed 97.3 0.00027 5.9E-09 58.3 4.1 25 15-39 196-220 (356)
443 cd02019 NK Nucleoside/nucleoti 97.2 0.00031 6.8E-09 43.4 3.0 21 17-37 2-22 (69)
444 cd03222 ABC_RNaseL_inhibitor T 97.2 0.0051 1.1E-07 45.6 9.6 23 16-38 27-49 (177)
445 PF00005 ABC_tran: ABC transpo 97.2 0.00031 6.6E-09 49.6 3.0 22 16-37 13-34 (137)
446 COG1116 TauB ABC-type nitrate/ 97.2 0.0004 8.6E-09 53.5 3.6 22 17-38 32-53 (248)
447 PF13521 AAA_28: AAA domain; P 97.2 0.00024 5.2E-09 51.9 2.2 22 16-37 1-22 (163)
448 KOG2423 Nucleolar GTPase [Gene 97.2 0.00015 3.3E-09 59.1 1.2 84 11-101 304-389 (572)
449 COG1136 SalX ABC-type antimicr 97.2 0.00045 9.8E-09 52.8 3.6 22 16-37 33-54 (226)
450 TIGR02475 CobW cobalamin biosy 97.2 0.0042 9.1E-08 51.0 9.5 99 63-170 93-224 (341)
451 TIGR00150 HI0065_YjeE ATPase, 97.1 0.0021 4.6E-08 45.1 6.6 23 15-37 23-45 (133)
452 COG0194 Gmk Guanylate kinase [ 97.1 0.00028 6.1E-09 51.9 2.0 24 15-38 5-28 (191)
453 KOG3929 Uncharacterized conser 97.1 0.00012 2.7E-09 56.3 0.2 147 11-160 42-236 (363)
454 PF00004 AAA: ATPase family as 97.1 0.00047 1E-08 48.0 3.0 21 17-37 1-21 (132)
455 cd03110 Fer4_NifH_child This p 97.1 0.0067 1.5E-07 44.8 9.4 86 61-155 91-176 (179)
456 KOG1533 Predicted GTPase [Gene 97.1 0.00034 7.5E-09 53.2 2.3 68 64-133 98-177 (290)
457 KOG0780 Signal recognition par 97.1 0.0017 3.6E-08 53.1 6.2 52 60-111 181-239 (483)
458 TIGR00235 udk uridine kinase. 97.1 0.00063 1.4E-08 51.7 3.7 27 11-37 3-29 (207)
459 smart00382 AAA ATPases associa 97.1 0.00056 1.2E-08 47.7 3.2 25 15-39 3-27 (148)
460 cd03111 CpaE_like This protein 97.1 0.0049 1.1E-07 41.6 7.6 100 20-128 6-106 (106)
461 PRK06217 hypothetical protein; 97.1 0.00052 1.1E-08 51.1 3.1 23 15-37 2-24 (183)
462 COG1120 FepC ABC-type cobalami 97.0 0.0005 1.1E-08 53.7 3.0 21 17-37 31-51 (258)
463 KOG0066 eIF2-interacting prote 97.0 0.006 1.3E-07 51.0 9.2 24 14-37 613-636 (807)
464 PRK04195 replication factor C 97.0 0.013 2.8E-07 50.5 11.9 24 14-37 39-62 (482)
465 cd00071 GMPK Guanosine monopho 97.0 0.00059 1.3E-08 48.3 3.0 21 17-37 2-22 (137)
466 PRK10078 ribose 1,5-bisphospho 97.0 0.00062 1.3E-08 50.8 3.2 22 16-37 4-25 (186)
467 PF13238 AAA_18: AAA domain; P 97.0 0.00056 1.2E-08 47.4 2.8 21 17-37 1-21 (129)
468 PRK14737 gmk guanylate kinase; 97.0 0.00059 1.3E-08 51.0 3.1 23 15-37 5-27 (186)
469 COG3638 ABC-type phosphate/pho 97.0 0.00059 1.3E-08 52.1 2.9 21 16-36 32-52 (258)
470 PRK03839 putative kinase; Prov 97.0 0.00062 1.3E-08 50.5 3.0 22 16-37 2-23 (180)
471 PRK10646 ADP-binding protein; 97.0 0.0059 1.3E-07 43.9 7.8 22 16-37 30-51 (153)
472 PRK14530 adenylate kinase; Pro 97.0 0.00068 1.5E-08 51.9 3.2 22 15-36 4-25 (215)
473 PRK14738 gmk guanylate kinase; 97.0 0.00081 1.7E-08 51.1 3.6 26 12-37 11-36 (206)
474 TIGR02322 phosphon_PhnN phosph 97.0 0.00065 1.4E-08 50.3 3.0 22 16-37 3-24 (179)
475 cd01130 VirB11-like_ATPase Typ 97.0 0.00073 1.6E-08 50.5 3.2 23 15-37 26-48 (186)
476 PF03205 MobB: Molybdopterin g 97.0 0.00077 1.7E-08 47.9 3.1 22 16-37 2-23 (140)
477 cd01131 PilT Pilus retraction 97.0 0.0081 1.8E-07 45.3 8.8 21 17-37 4-24 (198)
478 cd00820 PEPCK_HprK Phosphoenol 96.9 0.00075 1.6E-08 45.4 2.8 20 16-35 17-36 (107)
479 KOG0781 Signal recognition par 96.9 0.00076 1.6E-08 56.4 3.3 93 61-156 465-564 (587)
480 PF07728 AAA_5: AAA domain (dy 96.9 0.00081 1.8E-08 47.6 3.0 22 16-37 1-22 (139)
481 COG3840 ThiQ ABC-type thiamine 96.9 0.00087 1.9E-08 49.3 3.0 22 15-36 26-47 (231)
482 TIGR03263 guanyl_kin guanylate 96.9 0.00082 1.8E-08 49.8 3.0 22 16-37 3-24 (180)
483 TIGR01360 aden_kin_iso1 adenyl 96.9 0.0008 1.7E-08 50.1 3.0 22 15-36 4-25 (188)
484 PF02367 UPF0079: Uncharacteri 96.9 0.0021 4.5E-08 44.5 4.7 23 15-37 16-38 (123)
485 PRK13949 shikimate kinase; Pro 96.9 0.00091 2E-08 49.2 3.1 21 16-36 3-23 (169)
486 cd03238 ABC_UvrA The excision 96.9 0.0009 2E-08 49.5 3.1 21 15-35 22-42 (176)
487 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.9 0.00089 1.9E-08 51.2 3.2 22 16-37 32-53 (218)
488 cd02023 UMPK Uridine monophosp 96.9 0.00082 1.8E-08 50.7 3.0 21 17-37 2-22 (198)
489 COG1121 ZnuC ABC-type Mn/Zn tr 96.9 0.00084 1.8E-08 52.2 3.0 22 16-37 32-53 (254)
490 COG0802 Predicted ATPase or ki 96.9 0.005 1.1E-07 43.8 6.6 24 14-37 25-48 (149)
491 PF04665 Pox_A32: Poxvirus A32 96.9 0.00092 2E-08 51.7 3.2 26 12-37 11-36 (241)
492 cd03225 ABC_cobalt_CbiO_domain 96.9 0.00086 1.9E-08 51.1 3.0 22 16-37 29-50 (211)
493 PRK14532 adenylate kinase; Pro 96.9 0.00096 2.1E-08 49.8 3.2 21 16-36 2-22 (188)
494 TIGR01166 cbiO cobalt transpor 96.9 0.00091 2E-08 50.1 3.0 22 16-37 20-41 (190)
495 cd02036 MinD Bacterial cell di 96.9 0.033 7.1E-07 40.9 11.4 84 64-154 64-147 (179)
496 cd03226 ABC_cobalt_CbiO_domain 96.8 0.001 2.2E-08 50.4 3.2 22 16-37 28-49 (205)
497 COG3839 MalK ABC-type sugar tr 96.8 0.0012 2.5E-08 53.7 3.6 22 17-38 32-53 (338)
498 TIGR00960 3a0501s02 Type II (G 96.8 0.001 2.2E-08 50.9 3.2 22 16-37 31-52 (216)
499 PRK05480 uridine/cytidine kina 96.8 0.0012 2.5E-08 50.3 3.4 25 13-37 5-29 (209)
500 cd03261 ABC_Org_Solvent_Resist 96.8 0.0011 2.3E-08 51.5 3.2 22 16-37 28-49 (235)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-43 Score=254.65 Aligned_cols=175 Identities=48% Similarity=0.823 Sum_probs=166.8
Q ss_pred cccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCC
Q 027438 8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (223)
Q Consensus 8 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 87 (223)
....++.+||+|+|+.|||||+|+.++.++.+...+..|+|+++..+.+.++++.+.+++|||+|+++++.+..++++++
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEeccCCCCCHHH
Q 027438 88 VGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-FMETSALDSSNVTA 166 (223)
Q Consensus 88 d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~ 166 (223)
+++|+|||+++.+||+.+..|+.++.++...+.|.++||||+|+.+.+.++.++++.|+..++++ ++++||+++.|+++
T Consensus 83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence 99999999999999999999999999998888999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 027438 167 AFQTVVTEIYNILSRK 182 (223)
Q Consensus 167 ~~~~l~~~~~~~~~~~ 182 (223)
.|..|+..+..+....
T Consensus 163 ~F~~la~~lk~~~~~~ 178 (205)
T KOG0084|consen 163 AFLTLAKELKQRKGLH 178 (205)
T ss_pred HHHHHHHHHHHhcccC
Confidence 9999998876555443
No 2
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-40 Score=241.29 Aligned_cols=222 Identities=59% Similarity=0.946 Sum_probs=196.1
Q ss_pred CCccccccccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcch
Q 027438 1 MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVT 80 (223)
Q Consensus 1 ~~~~~~~~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 80 (223)
|.+.....+..++.+||+++|++++|||-|+.++...++......|+|+++....+.++++.+..+||||+|+++|+.+.
T Consensus 1 ~~~~~~~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAit 80 (222)
T KOG0087|consen 1 MARRRDKSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAIT 80 (222)
T ss_pred CCCccCCccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhcccc
Confidence 55666777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCC
Q 027438 81 SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALD 160 (223)
Q Consensus 81 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (223)
.++++.+.+.++|||++.+.+|+.+..|+.+++.+.+.++++++||||+||...+.+..++++.+++..+..|+++||.+
T Consensus 81 SaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~ 160 (222)
T KOG0087|consen 81 SAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALD 160 (222)
T ss_pred chhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccc
Confidence 99999999999999999999999999999999999998999999999999998889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCCCCCceeeecCCCcccccCCCCCCCCC
Q 027438 161 SSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS 222 (223)
Q Consensus 161 ~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 222 (223)
+.|++..|+.++..+++...++...........+....+....+.........+.++.+||.
T Consensus 161 ~tNVe~aF~~~l~~I~~~vs~k~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~cc~ 222 (222)
T KOG0087|consen 161 ATNVEKAFERVLTEIYKIVSKKQLDENNDPLESSSPLQGQEISVHPTSEEPFSPTKKSGCCS 222 (222)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCcccccccCCccccccccCCCCCC
Confidence 99999999999999999999998765544322222334445555544444444555667774
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-40 Score=236.04 Aligned_cols=168 Identities=45% Similarity=0.749 Sum_probs=159.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEE
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 91 (223)
...+||+|+|+.++|||||+.|+..+.+.+...+|+|..+..+.+.+++..+.+.||||+|+++|..+..+|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 35699999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027438 92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
+|||+++.+||..+..|+.++.+....++-+.+||||+|+.+.+++..+++..+++..++.||++||+++.|++++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999998887778888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027438 172 VTEIYNIL 179 (223)
Q Consensus 172 ~~~~~~~~ 179 (223)
++++....
T Consensus 163 a~~lp~~~ 170 (200)
T KOG0092|consen 163 AEKLPCSD 170 (200)
T ss_pred HHhccCcc
Confidence 98875443
No 4
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-39 Score=233.83 Aligned_cols=173 Identities=49% Similarity=0.860 Sum_probs=167.0
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcE
Q 027438 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 10 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
++++.++|+++|+++||||+|+.++..+.+...+..++|+++..+.+..++..+.+++|||+|++++..+...|++.|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027438 90 ALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 90 vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 169 (223)
+++|||+++..||+.+..|+..+..+.....|.++||||+|+...++++.+.++.+|..+|++|+++||++|.||++.|-
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 027438 170 TVVTEIYNILSRK 182 (223)
Q Consensus 170 ~l~~~~~~~~~~~ 182 (223)
.|++.+.+.+...
T Consensus 168 ~La~~i~~k~~~~ 180 (207)
T KOG0078|consen 168 SLARDILQKLEDA 180 (207)
T ss_pred HHHHHHHhhcchh
Confidence 9999998755554
No 5
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-39 Score=228.75 Aligned_cols=175 Identities=53% Similarity=0.872 Sum_probs=167.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEE
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 90 (223)
+.+.+|++++|+.|||||+|+.+++...+.+..+.|+|+++....+.+++..+++++|||+|++.+..++..+++.+.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027438 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
|+|||++++++|+.+..|+..+.++...+.-+++++||+|+...++++.+|.+.||+++++.++++||++++|+++.|-.
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN 162 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999999998778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhh
Q 027438 171 VVTEIYNILSRKVMI 185 (223)
Q Consensus 171 l~~~~~~~~~~~~~~ 185 (223)
....++.....-...
T Consensus 163 ta~~Iy~~~q~g~~~ 177 (216)
T KOG0098|consen 163 TAKEIYRKIQDGVFD 177 (216)
T ss_pred HHHHHHHHHHhcccc
Confidence 999999888776644
No 6
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.1e-38 Score=221.91 Aligned_cols=168 Identities=45% Similarity=0.757 Sum_probs=158.4
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCc
Q 027438 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 9 ~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
....+.+||+|+|.+|+|||||+.+++...+.+..+.++|+++..+.+.+++..+.+.||||+|+++|+.++..|++.+.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 45677899999999999999999999999999998898999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 027438 89 GALLVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAA 167 (223)
Q Consensus 89 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 167 (223)
++|+|||++.+++|..+..|++++..++ +.++..++|+||+|...++.++.+|...|++.+++-|+++||++.+|+...
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 9999999999999999999999997775 446777899999999888999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 027438 168 FQTVVTEIY 176 (223)
Q Consensus 168 ~~~l~~~~~ 176 (223)
|+.|+.+++
T Consensus 166 FeelveKIi 174 (209)
T KOG0080|consen 166 FEELVEKII 174 (209)
T ss_pred HHHHHHHHh
Confidence 999988774
No 7
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-38 Score=228.82 Aligned_cols=167 Identities=37% Similarity=0.692 Sum_probs=157.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEE
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 91 (223)
-..+||+++|+.+|||||||.++..+.+...+.+|+|+++...++.+.+..+++++|||+|+++|+.+...|++++.++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcCCC-CCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027438 92 LVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
+|||+++..||++..+|+..+...... ...+++||||.||.+.++++.+|....++.+++.|.++||+.|.||..+|..
T Consensus 100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrr 179 (221)
T KOG0094|consen 100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRR 179 (221)
T ss_pred EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHH
Confidence 999999999999999999999887665 4888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027438 171 VVTEIYNI 178 (223)
Q Consensus 171 l~~~~~~~ 178 (223)
|+..+.+.
T Consensus 180 Iaa~l~~~ 187 (221)
T KOG0094|consen 180 IAAALPGM 187 (221)
T ss_pred HHHhccCc
Confidence 87766443
No 8
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=1.1e-37 Score=238.80 Aligned_cols=207 Identities=59% Similarity=0.965 Sum_probs=173.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEE
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 90 (223)
.++.+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 55779999999999999999999999888777888888888888888899999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027438 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
|+|||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~ 168 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT 168 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988776668999999999999877778888999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhccCCCCCCceeeecCCCcccccCCCCCCCCC
Q 027438 171 VVTEIYNILSRKVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS 222 (223)
Q Consensus 171 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 222 (223)
|+..+.+.+..+...........+++.++++... .+. .+.+++||||
T Consensus 169 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~c~ 215 (216)
T PLN03110 169 ILLEIYHIISKKALAAQEAAANSGLPGQGTTINV---ADT--SGNNKRGCCS 215 (216)
T ss_pred HHHHHHHHhhccccccccCcccccCcCcCCcccc---cCc--cCCCCCCCcC
Confidence 9999988766555433221221222333333333 112 3557788997
No 9
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=4.8e-38 Score=223.56 Aligned_cols=172 Identities=33% Similarity=0.647 Sum_probs=159.3
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcE
Q 027438 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 10 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
.+...+||+++|++|+|||||++++++..+...+..++|.++..+.+.+++..+.++||||+|+++|.++.-.+++++|.
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhcCC----CCCcEEEEEeCCCCCCC--cccCHHHHHHHHHHc-CCeEEEeccCCCC
Q 027438 90 ALLVYDISRRQTFDSIGRWLNELHTHSD----MNVVTILVGNKSDLKDA--REVTTAEGKALAEAQ-GLFFMETSALDSS 162 (223)
Q Consensus 90 vi~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~ 162 (223)
.+++||++++.||+.+..|..++..+.. ...|+||+|||+|+... +.++...++.+|... ++|||++|||+..
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 9999999999999999999999866543 46899999999998753 789999999999877 5789999999999
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q 027438 163 NVTAAFQTVVTEIYNILSR 181 (223)
Q Consensus 163 ~i~~~~~~l~~~~~~~~~~ 181 (223)
||.+.|+.+++.++.....
T Consensus 165 NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 165 NVDEAFEEIARRALANEDR 183 (210)
T ss_pred cHHHHHHHHHHHHHhccch
Confidence 9999999999999887765
No 10
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=5.1e-37 Score=231.90 Aligned_cols=166 Identities=40% Similarity=0.770 Sum_probs=152.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
++|+++|+.|||||||++++..+.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47999999999999999999999998888889888888888889999999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-CCeEEEeccCCCCCHHHHHHHHHH
Q 027438 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ-GLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
|++++.+|+.+..|+..+......+.|+++|+||+|+.+.+++..+++.++++.. ++.|++|||++|.|++++|++|+.
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887766667999999999999877888899999999875 788999999999999999999998
Q ss_pred HHHHHHh
Q 027438 174 EIYNILS 180 (223)
Q Consensus 174 ~~~~~~~ 180 (223)
.+.+...
T Consensus 161 ~~~~~~~ 167 (202)
T cd04120 161 DILKKMP 167 (202)
T ss_pred HHHHhCc
Confidence 8866543
No 11
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.6e-38 Score=215.85 Aligned_cols=170 Identities=47% Similarity=0.805 Sum_probs=161.6
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCc
Q 027438 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 9 ~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
+.....++.+|+|++|+|||+|+.++..+.+...|..++|+++..+++.++|..+.++|||++|++.|+.++..+++..+
T Consensus 3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgth 82 (198)
T KOG0079|consen 3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTH 82 (198)
T ss_pred ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCc
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027438 89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168 (223)
Q Consensus 89 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 168 (223)
++++|||+++.+||.++..|++++...++ ..|-|+||||.|..+.+.+..++++.++...++.+|++|+++++|++..|
T Consensus 83 gv~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 83 GVIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMF 161 (198)
T ss_pred eEEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence 99999999999999999999999999887 79999999999999988899999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027438 169 QTVVTEIYNIL 179 (223)
Q Consensus 169 ~~l~~~~~~~~ 179 (223)
.-|.+.+....
T Consensus 162 ~cit~qvl~~k 172 (198)
T KOG0079|consen 162 HCITKQVLQAK 172 (198)
T ss_pred HHHHHHHHHHH
Confidence 99998877665
No 12
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.7e-36 Score=230.01 Aligned_cols=165 Identities=35% Similarity=0.629 Sum_probs=148.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEEC-CEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 93 (223)
+||+|+|++|||||||+++|.++.+...+.++.+.++....+.++ +..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999998888888888888877777777 7889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhcC----CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CeEEEeccCCCCCHHHHH
Q 027438 94 YDISRRQTFDSIGRWLNELHTHS----DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG-LFFMETSALDSSNVTAAF 168 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~ 168 (223)
||++++.+|+.+..|+..+.... ....|+++|+||+|+.+.+.+..+++..++...+ ..++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999998876432 2468999999999998666788899999999998 689999999999999999
Q ss_pred HHHHHHHHHHH
Q 027438 169 QTVVTEIYNIL 179 (223)
Q Consensus 169 ~~l~~~~~~~~ 179 (223)
++|++.+.+.+
T Consensus 161 ~~l~~~l~~~~ 171 (201)
T cd04107 161 RFLVKNILAND 171 (201)
T ss_pred HHHHHHHHHhc
Confidence 99998886553
No 13
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.4e-36 Score=227.50 Aligned_cols=169 Identities=38% Similarity=0.668 Sum_probs=153.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEE
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 90 (223)
.+..+||+|+|+.|||||||++++.++.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 35679999999999999999999999888777777778888777888899999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027438 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
|+|||++++.+|+.+..|+..+..... +.|++|||||.|+.+.+.++.++++.+++..+++||+|||++|.|++++|++
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~~-~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 999999999999999999999977654 7999999999999877788999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 027438 171 VVTEIYNILS 180 (223)
Q Consensus 171 l~~~~~~~~~ 180 (223)
|+..++.+..
T Consensus 162 l~~~i~~~~~ 171 (189)
T cd04121 162 LARIVLMRHG 171 (189)
T ss_pred HHHHHHHhcC
Confidence 9987765433
No 14
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-37 Score=214.00 Aligned_cols=180 Identities=42% Similarity=0.753 Sum_probs=170.1
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCc
Q 027438 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 9 ~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
++++..+||+++|+.|+|||+|+++++.+-+++....++|+++..+++.++++.+.+++|||+|++++++++..+++.++
T Consensus 2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah 81 (213)
T KOG0095|consen 2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH 81 (213)
T ss_pred cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027438 89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168 (223)
Q Consensus 89 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 168 (223)
++|++||++...+|+-+..|+.++..+.+.+..-|+|+||.|+.+.+++..+.+++|++.....|.++||++..|++.+|
T Consensus 82 alilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 82 ALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF 161 (213)
T ss_pred eEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence 99999999999999999999999999988888899999999999989999999999999989999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhh
Q 027438 169 QTVVTEIYNILSRKVMISQE 188 (223)
Q Consensus 169 ~~l~~~~~~~~~~~~~~~~~ 188 (223)
..++-++.....++-.+...
T Consensus 162 ~~~a~rli~~ar~~d~v~~~ 181 (213)
T KOG0095|consen 162 LDLACRLISEARQNDLVNNV 181 (213)
T ss_pred HHHHHHHHHHHHhccchhhc
Confidence 99999998888877765433
No 15
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-36 Score=208.81 Aligned_cols=172 Identities=42% Similarity=0.759 Sum_probs=162.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEE
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 90 (223)
-++-+|++|+|+..+|||||+.++.+..+.+....+.|+++..+++.-....+.+++|||+|++.++.++..++++++++
T Consensus 18 FDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgf 97 (193)
T KOG0093|consen 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 97 (193)
T ss_pred ccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceE
Confidence 46778999999999999999999999999999999999999999888888999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027438 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
|+|||++|.+||..++.|.-.+..++-.+.|+|+|+||||+.+++.++.+..+.+++++|..||++||+.+.|++++|+.
T Consensus 98 iLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~ 177 (193)
T KOG0093|consen 98 ILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFER 177 (193)
T ss_pred EEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHH
Confidence 99999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 027438 171 VVTEIYNILSRK 182 (223)
Q Consensus 171 l~~~~~~~~~~~ 182 (223)
+...+.+.+...
T Consensus 178 lv~~Ic~kmses 189 (193)
T KOG0093|consen 178 LVDIICDKMSES 189 (193)
T ss_pred HHHHHHHHhhhh
Confidence 998887766544
No 16
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=2.6e-35 Score=223.18 Aligned_cols=196 Identities=40% Similarity=0.697 Sum_probs=163.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEE
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 91 (223)
++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..++++++++|
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 45799999999999999999999998887777888888887778888888899999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027438 92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
+|||++++.+|+.+..|+..+..... ..|+++|+||+|+.+...+..+++..++...++++|++||++|.|++++|++|
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l 162 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCI 162 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHH
Confidence 99999999999999999999876554 68999999999998766778888899998889999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhhccCCCCCCceeeecCCCcccccCCCCCCCC
Q 027438 172 VTEIYNILSRKVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCC 221 (223)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 221 (223)
...++.....+.. ..+.....-....+++.+++..||
T Consensus 163 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T cd04110 163 TELVLRAKKDNLA-------------KQQQQQQNDVVKLPKNSKRKKRCC 199 (199)
T ss_pred HHHHHHhhhccCc-------------ccccCCccccCccchhccccccCC
Confidence 9988655333321 111122222334455667778888
No 17
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.1e-35 Score=220.93 Aligned_cols=164 Identities=46% Similarity=0.765 Sum_probs=149.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999887778888888887788888888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027438 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
|++++.+|+.+..|+..+........|+++|+||+|+.+...+..+++..++...+++++++||++|.|++++|++|++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999887665568999999999998777788888889998889999999999999999999999988
Q ss_pred HHHH
Q 027438 175 IYNI 178 (223)
Q Consensus 175 ~~~~ 178 (223)
+.++
T Consensus 161 ~~~~ 164 (188)
T cd04125 161 IIKR 164 (188)
T ss_pred HHHH
Confidence 7643
No 18
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=5e-35 Score=215.53 Aligned_cols=164 Identities=49% Similarity=0.869 Sum_probs=150.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEE
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 93 (223)
.+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999988888888888888777788888899999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027438 94 YDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.++.+++..+++..+++++++||++|.|++++|+.++.
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999887765567999999999999887788889999999999999999999999999999999998
Q ss_pred HHHH
Q 027438 174 EIYN 177 (223)
Q Consensus 174 ~~~~ 177 (223)
.+++
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 7754
No 19
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=6.4e-35 Score=222.84 Aligned_cols=187 Identities=31% Similarity=0.519 Sum_probs=152.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+|+|.+|||||||+++|.++.+.. +.++.+..+....+ ..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999988864 56676665544433 4678999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC-------------------CcccCHHHHHHHHHHcC-----
Q 027438 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD-------------------AREVTTAEGKALAEAQG----- 150 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~----- 150 (223)
|++++.+|+.+..|+..+......+.|+|+|+||+|+.+ .+.++.+++..+++..+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999888877665555799999999999875 57788999999999876
Q ss_pred ---------CeEEEeccCCCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCCCCCceeeecCCCcccccCCCCCCCC
Q 027438 151 ---------LFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCC 221 (223)
Q Consensus 151 ---------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 221 (223)
++||+|||++|.||+++|..++..++....++....... -..+.+.+-+.+|.+||
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~ 220 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRT---------------QGTVNLPNPKRSKSKCC 220 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhh---------------hccccCCCcccCCCCCC
Confidence 689999999999999999999998876655554421111 12333444566788898
No 20
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=5.1e-35 Score=217.96 Aligned_cols=164 Identities=32% Similarity=0.552 Sum_probs=146.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEE
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 90 (223)
.+..+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 35678999999999999999999999999888888877655 45677889999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-eEEEe
Q 027438 91 LLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD------------AREVTTAEGKALAEAQGL-FFMET 156 (223)
Q Consensus 91 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 156 (223)
|+|||++++.+|+.+ ..|+..+....+ ..|++||+||+|+.+ .+.++.+++.++++.+++ +|++|
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 999999999999997 899999987654 699999999999864 245889999999999996 89999
Q ss_pred ccCCCCC-HHHHHHHHHHHHH
Q 027438 157 SALDSSN-VTAAFQTVVTEIY 176 (223)
Q Consensus 157 Sa~~~~~-i~~~~~~l~~~~~ 176 (223)
||++|.| |+++|+.++..++
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 160 SALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHh
Confidence 9999998 9999999987543
No 21
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=1.4e-34 Score=213.42 Aligned_cols=166 Identities=51% Similarity=0.903 Sum_probs=151.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEE
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 91 (223)
++.+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+++||++|++.+...+..+++++|++|
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 35699999999999999999999999998888888888887777888888899999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027438 92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
+|||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999987665679999999999998777778888889999999999999999999999999999
Q ss_pred HHHHHH
Q 027438 172 VTEIYN 177 (223)
Q Consensus 172 ~~~~~~ 177 (223)
++++..
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 988753
No 22
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.2e-34 Score=221.10 Aligned_cols=171 Identities=27% Similarity=0.458 Sum_probs=150.8
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcE
Q 027438 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 10 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
+....+||+++|+.|||||||+.+|.++.+...+.++.+..+. ..+.+++..+.+.||||+|++.+..++..+++++|+
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 4456799999999999999999999999998888888876654 457788999999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-eEEE
Q 027438 90 ALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD------------AREVTTAEGKALAEAQGL-FFME 155 (223)
Q Consensus 90 vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 155 (223)
+|+|||++++.+|+.+ ..|+..+....+ ..|+|+|+||+|+.+ .+.++.++++++++.+++ .||+
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E 166 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE 166 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence 9999999999999985 899999987654 689999999999864 256889999999999999 5999
Q ss_pred eccCCCC-CHHHHHHHHHHHHHHHHhhh
Q 027438 156 TSALDSS-NVTAAFQTVVTEIYNILSRK 182 (223)
Q Consensus 156 ~Sa~~~~-~i~~~~~~l~~~~~~~~~~~ 182 (223)
|||++|. |++++|+.++..+++....+
T Consensus 167 tSAktg~~~V~e~F~~~~~~~~~~~~~~ 194 (232)
T cd04174 167 CSAFTSEKSIHSIFRSASLLCLNKLSPP 194 (232)
T ss_pred ccCCcCCcCHHHHHHHHHHHHHHhcccc
Confidence 9999997 89999999999887654444
No 23
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=218.04 Aligned_cols=164 Identities=37% Similarity=0.560 Sum_probs=145.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEE
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 92 (223)
..+||+|+|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|+
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 358999999999999999999999888777777766555 5566788888999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027438 93 VYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|++|
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 999999999999999999886653 3478999999999987767778888888888889999999999999999999999
Q ss_pred HHHHHH
Q 027438 172 VTEIYN 177 (223)
Q Consensus 172 ~~~~~~ 177 (223)
++.+.+
T Consensus 163 ~~~l~~ 168 (189)
T PTZ00369 163 VREIRK 168 (189)
T ss_pred HHHHHH
Confidence 987754
No 24
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=9.4e-35 Score=222.60 Aligned_cols=164 Identities=33% Similarity=0.583 Sum_probs=148.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECC-EEEEEEEEeCCCcchhhcchHhhhcCCcEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING-KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 93 (223)
+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++ ..+.+.||||+|++.+..++..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999988888889988888877777764 578999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhcCC---CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027438 94 YDISRRQTFDSIGRWLNELHTHSD---MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
||++++.+|+.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999876542 35689999999999877788888999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027438 171 VVTEIYNI 178 (223)
Q Consensus 171 l~~~~~~~ 178 (223)
|+..+.+.
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99888764
No 25
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=9.4e-35 Score=215.34 Aligned_cols=159 Identities=32% Similarity=0.596 Sum_probs=143.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+++|++|+|||||+.++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++++..++..+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 7999999999999999999999999888888887665 455677889999999999999999999999999999999999
Q ss_pred ECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCC----------cccCHHHHHHHHHHcCC-eEEEeccCCCC
Q 027438 95 DISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDA----------REVTTAEGKALAEAQGL-FFMETSALDSS 162 (223)
Q Consensus 95 d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~D~~~~----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 162 (223)
|++++.||+.+ ..|+..+..... +.|++|||||+|+.+. +.++.+++..+++..++ .|++|||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 689999876654 7999999999999653 24789999999999998 59999999999
Q ss_pred CHHHHHHHHHHHH
Q 027438 163 NVTAAFQTVVTEI 175 (223)
Q Consensus 163 ~i~~~~~~l~~~~ 175 (223)
||+++|+.+++.+
T Consensus 160 nV~~~F~~~~~~~ 172 (176)
T cd04133 160 NVKAVFDAAIKVV 172 (176)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999765
No 26
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=3.5e-34 Score=218.53 Aligned_cols=172 Identities=49% Similarity=0.855 Sum_probs=155.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEE
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 91 (223)
++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 45699999999999999999999998888878888888888888888888899999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027438 92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
+|||++++.+|+.+..|+..+........|+++|+||+|+.+.+.++.+++..+++.++++++++||+++.|++++|+++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999988876655679999999999998777788899999999999999999999999999999999
Q ss_pred HHHHHHHHhhhh
Q 027438 172 VTEIYNILSRKV 183 (223)
Q Consensus 172 ~~~~~~~~~~~~ 183 (223)
++.+++......
T Consensus 164 ~~~~~~~~~~~~ 175 (210)
T PLN03108 164 AAKIYKKIQDGV 175 (210)
T ss_pred HHHHHHHhhhcc
Confidence 999987665443
No 27
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.3e-34 Score=216.62 Aligned_cols=163 Identities=47% Similarity=0.793 Sum_probs=145.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 93 (223)
+||+|+|++|||||||++++.++.+.. .+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988753 5566767777776778888899999999999999998899999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027438 94 YDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
||++++.+|+.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++|+++||++|.|++++|++|++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998776667999999999999766777788888999999999999999999999999999998
Q ss_pred HHHH
Q 027438 174 EIYN 177 (223)
Q Consensus 174 ~~~~ 177 (223)
.+.+
T Consensus 161 ~~~~ 164 (191)
T cd04112 161 ELKH 164 (191)
T ss_pred HHHH
Confidence 7743
No 28
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.4e-34 Score=218.64 Aligned_cols=170 Identities=45% Similarity=0.789 Sum_probs=151.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEE-CCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEE
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI-NGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 92 (223)
.+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999888878888888887777766 4677899999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027438 93 VYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
|||++++.+|+.+..|+..+.... ....|+++|+||+|+.+...+..+++..+++.++++++++||++|.|++++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 999999999999999999987653 3357889999999998777788889999999999999999999999999999999
Q ss_pred HHHHHHHHhhhh
Q 027438 172 VTEIYNILSRKV 183 (223)
Q Consensus 172 ~~~~~~~~~~~~ 183 (223)
++.+++.+....
T Consensus 162 ~~~~~~~~~~~~ 173 (211)
T cd04111 162 TQEIYERIKRGE 173 (211)
T ss_pred HHHHHHHhhcCC
Confidence 999888865553
No 29
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=1.8e-34 Score=211.52 Aligned_cols=160 Identities=43% Similarity=0.772 Sum_probs=147.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
++|+++|++|+|||||++++.++.+.+.+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888888888887778888888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027438 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
|++++.+|+.+..|+..+........|+++|+||+|+.+.+.+..+++..+++..+++|+++||++|.|++++|++|+++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999999877665579999999999998878888899999999999999999999999999999999864
No 30
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-35 Score=202.12 Aligned_cols=177 Identities=48% Similarity=0.779 Sum_probs=166.7
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcC
Q 027438 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86 (223)
Q Consensus 7 ~~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 86 (223)
|.+.+++.+|++|+|+.|+|||+|++++...++......++|+++....+.+.++.++++||||+|+++++.....+++.
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 027438 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA 166 (223)
Q Consensus 87 ~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 166 (223)
+.+.++|||++++++|+.+..|+..++......+-+++++||.|+...++++..++..|+....+.+.++||.+|+|+++
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE 161 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence 99999999999999999999999999888777888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 027438 167 AFQTVVTEIYNILSRKV 183 (223)
Q Consensus 167 ~~~~l~~~~~~~~~~~~ 183 (223)
.|-...+.++..+..-.
T Consensus 162 aFl~c~~tIl~kIE~GE 178 (214)
T KOG0086|consen 162 AFLKCARTILNKIESGE 178 (214)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99998888877665433
No 31
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=2.9e-34 Score=215.98 Aligned_cols=162 Identities=34% Similarity=0.545 Sum_probs=141.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEE
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD 95 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d 95 (223)
+|+|+|++|||||||+++|.++.+...+.++.+..+ .....+++..+.+.+|||+|++.+..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999999888777777766444 3455678888899999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHhhcC---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027438 96 ISRRQTFDSIGRWLNELHTHS---DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 96 ~~~~~s~~~~~~~~~~i~~~~---~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
++++.+|+.+..|+..+.... ..+.|+++|+||+|+...+.+...++..++...+++++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999998886543 24689999999999987677888888889888899999999999999999999999
Q ss_pred HHHHHH
Q 027438 173 TEIYNI 178 (223)
Q Consensus 173 ~~~~~~ 178 (223)
+.+.++
T Consensus 160 ~~l~~~ 165 (190)
T cd04144 160 RALRQQ 165 (190)
T ss_pred HHHHHh
Confidence 876433
No 32
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=3.4e-34 Score=212.22 Aligned_cols=165 Identities=32% Similarity=0.477 Sum_probs=146.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEE
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 93 (223)
.+||+|+|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 37999999999999999999999988777777876444 44567788889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027438 94 YDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
||++++.+|+.+..|+..+... ...+.|+++|+||+|+.+.++++.+++..+++..+++|++|||++|.|++++|++|+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 9999999999999998887654 334799999999999987778888999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 027438 173 TEIYNIL 179 (223)
Q Consensus 173 ~~~~~~~ 179 (223)
..+.+..
T Consensus 161 ~~~~~~~ 167 (172)
T cd04141 161 REIRRKE 167 (172)
T ss_pred HHHHHhc
Confidence 8876543
No 33
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.4e-34 Score=213.06 Aligned_cols=160 Identities=30% Similarity=0.551 Sum_probs=142.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 6899999999999999999999998888888876655 356778899999999999999999999999999999999999
Q ss_pred ECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-eEEEeccCC
Q 027438 95 DISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD------------AREVTTAEGKALAEAQGL-FFMETSALD 160 (223)
Q Consensus 95 d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (223)
|++++.||+.+ ..|+..+....+ ..|+++|+||+|+.+ .+.++.+++.++++.+++ +|++|||++
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 99999999996 799999987754 799999999999864 245889999999999997 799999999
Q ss_pred CCC-HHHHHHHHHHHHH
Q 027438 161 SSN-VTAAFQTVVTEIY 176 (223)
Q Consensus 161 ~~~-i~~~~~~l~~~~~ 176 (223)
|+| ++++|..+++..+
T Consensus 160 ~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 160 SEKSVRDIFHVATMACL 176 (178)
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 995 9999999987543
No 34
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=3.9e-34 Score=209.83 Aligned_cols=161 Identities=37% Similarity=0.721 Sum_probs=153.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEE
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD 95 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d 95 (223)
||+|+|++|||||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||++|++.+..+...+++.+|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999988888998899999999999999999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027438 96 ISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 96 ~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
++++.||+.+..|+..+........|+++|+||.|+.+.++++.++++.+++.++++|+++||+++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999888776799999999999988788999999999999999999999999999999999999887
Q ss_pred H
Q 027438 176 Y 176 (223)
Q Consensus 176 ~ 176 (223)
+
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 4
No 35
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=5.2e-34 Score=212.72 Aligned_cols=167 Identities=39% Similarity=0.750 Sum_probs=148.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEEC----------CEEEEEEEEeCCCcchhhcchH
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN----------GKEVKAQIWDTAGQERFRAVTS 81 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~D~~G~~~~~~~~~ 81 (223)
++.+||+++|++|||||||++++.++.+...+.++.+.++....+.+. +..+.+.+|||||++.+...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 467999999999999999999999999888888888877766665553 4568899999999999999999
Q ss_pred hhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCC
Q 027438 82 AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALD 160 (223)
Q Consensus 82 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (223)
.+++++|++|+|||++++.+|..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 161 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT 161 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 99999999999999999999999999999986653 34689999999999987777888899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 027438 161 SSNVTAAFQTVVTEIYNI 178 (223)
Q Consensus 161 ~~~i~~~~~~l~~~~~~~ 178 (223)
|.|++++|++|++.++++
T Consensus 162 ~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 162 GTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999888654
No 36
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=8.5e-34 Score=208.77 Aligned_cols=162 Identities=44% Similarity=0.772 Sum_probs=147.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+++|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988888888887777777777888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027438 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
|++++.+++.+..|+..+........|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|++|+..
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999977665578999999999998777777888888999999999999999999999999999876
Q ss_pred HH
Q 027438 175 IY 176 (223)
Q Consensus 175 ~~ 176 (223)
+.
T Consensus 162 ~~ 163 (165)
T cd01865 162 IC 163 (165)
T ss_pred HH
Confidence 53
No 37
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2e-35 Score=205.13 Aligned_cols=211 Identities=36% Similarity=0.624 Sum_probs=179.0
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCc
Q 027438 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 9 ~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
..+...+||+++|.-=+|||||+-+++...|......+.-..+..+.+.+.+....++||||+|+++|-.+-.-+++.+|
T Consensus 8 ~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSn 87 (218)
T KOG0088|consen 8 DGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSN 87 (218)
T ss_pred cCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCC
Confidence 34566799999999999999999999999887766666666777788888889999999999999999999999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027438 89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168 (223)
Q Consensus 89 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 168 (223)
++++|||++++.||+.+..|..++..-....+-+++|+||+|+.+++.++.+++..++..-|+.|+++||+++.||.++|
T Consensus 88 GalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elF 167 (218)
T KOG0088|consen 88 GALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELF 167 (218)
T ss_pred ceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHH
Confidence 99999999999999999999999988777678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhccCCCCCCceeeecCCCcccccCCCCCCCCCC
Q 027438 169 QTVVTEIYNILSRKVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCSS 223 (223)
Q Consensus 169 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 223 (223)
+.|..++++...++....-++ +..+....-.++......+..+..++||.+
T Consensus 168 e~Lt~~MiE~~s~~qr~~~~~----s~qpp~t~r~~~~iD~e~~a~~sg~~CC~~ 218 (218)
T KOG0088|consen 168 ESLTAKMIEHSSQRQRTRSPL----STQPPSTNRSIRLIDNEAEAERSGKRCCRI 218 (218)
T ss_pred HHHHHHHHHHhhhcccccCCc----CCCCCCcccchhccCCCcccccccCCccCC
Confidence 999999998887776543222 222233333344444444567777789975
No 38
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.9e-35 Score=204.21 Aligned_cols=171 Identities=44% Similarity=0.788 Sum_probs=158.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEE-CCEEEEEEEEeCCCcchhhcchHhhhcCCcE
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI-NGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
..+.++++|+|++-+|||+|++.++.+.+....+|+.|+++....+.. +|..+.+++|||+|++++++++..+++++-+
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 457899999999999999999999999999999999999998887766 6788999999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhcC--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 027438 90 ALLVYDISRRQTFDSIGRWLNELHTHS--DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAA 167 (223)
Q Consensus 90 vi~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 167 (223)
+++|||++|++||+.+..|+.+...+. +.++-+.+||+|+|+...++++.+|++.+++.++..|+++||++|.|+++.
T Consensus 85 vllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 85 VLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA 164 (213)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence 999999999999999999999976654 334456777999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 027438 168 FQTVVTEIYNILSR 181 (223)
Q Consensus 168 ~~~l~~~~~~~~~~ 181 (223)
|..|++.++..+.+
T Consensus 165 F~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 165 FDMLAQEIFQAIQQ 178 (213)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988877
No 39
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=1.1e-33 Score=208.34 Aligned_cols=163 Identities=50% Similarity=0.850 Sum_probs=149.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEE
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 93 (223)
.+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999999888777778888888777888888889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027438 94 YDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
||++++.+|+.+..|+..+......+.|+++|+||+|+.+...+..+++..++...+++++++||++|.|++++|+.|++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999987766557999999999999877778888999999999999999999999999999999988
Q ss_pred HHH
Q 027438 174 EIY 176 (223)
Q Consensus 174 ~~~ 176 (223)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 774
No 40
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=8.5e-34 Score=208.85 Aligned_cols=162 Identities=34% Similarity=0.672 Sum_probs=148.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999988888888888888888888899999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCC-----CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027438 95 DISRRQTFDSIGRWLNELHTHSD-----MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~-----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 169 (223)
|++++.+++.+..|+..+..... .+.|+++|+||+|+.+......++.+.++...+++++++||++|.|++++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999876643 4699999999999976566788888888888899999999999999999999
Q ss_pred HHHHHHH
Q 027438 170 TVVTEIY 176 (223)
Q Consensus 170 ~l~~~~~ 176 (223)
+|++.++
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998775
No 41
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1.4e-33 Score=212.36 Aligned_cols=160 Identities=29% Similarity=0.547 Sum_probs=141.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEE
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 93 (223)
.+||+++|+.|||||||+.++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 48999999999999999999999998888888877554 34456788999999999999999999999999999999999
Q ss_pred EECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-CeEEEeccC
Q 027438 94 YDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQG-LFFMETSAL 159 (223)
Q Consensus 94 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 159 (223)
||++++.+|+.+. .|+..+..... +.|+++|+||.|+.+. +.+..+++..+++..+ ++|+++||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCP-NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999996 69888766544 7999999999999653 2367788999999998 589999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 027438 160 DSSNVTAAFQTVVTEI 175 (223)
Q Consensus 160 ~~~~i~~~~~~l~~~~ 175 (223)
+|.|++++|++|++.+
T Consensus 161 ~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 161 NQDGVKEVFAEAVRAV 176 (191)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998766
No 42
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=2.8e-33 Score=206.61 Aligned_cols=166 Identities=54% Similarity=0.914 Sum_probs=151.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEE
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 91 (223)
++.+||+|+|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++|
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999999888887888888888888888888899999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027438 92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
+|||++++.+++.+..|+..+......+.|+++|+||.|+.+...+..++++.++...+++++++||++++|++++|+++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999977665679999999999998666778888999999999999999999999999999999
Q ss_pred HHHHHH
Q 027438 172 VTEIYN 177 (223)
Q Consensus 172 ~~~~~~ 177 (223)
++.+++
T Consensus 162 ~~~~~~ 167 (168)
T cd01866 162 AKEIYE 167 (168)
T ss_pred HHHHHh
Confidence 987753
No 43
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=2.2e-33 Score=206.51 Aligned_cols=163 Identities=67% Similarity=1.075 Sum_probs=149.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEE
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 92 (223)
+.++|+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 45899999999999999999999998887888888888888888888888899999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027438 93 VYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
|||++++.+++.+..|+..+......+.|+++|+||.|+...+.+..++...++...+++++++||++|.|++++|++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999877665799999999999987777788888899888899999999999999999999998
Q ss_pred HHH
Q 027438 173 TEI 175 (223)
Q Consensus 173 ~~~ 175 (223)
..+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 765
No 44
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.6e-33 Score=210.23 Aligned_cols=162 Identities=30% Similarity=0.541 Sum_probs=143.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+++|+.|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999988888899888888788888999999999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC-----cccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027438 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA-----REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 169 (223)
|++++.+|+.+..|+..+........| ++|+||+|+... .....+++..+++..+++++++||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999998776554566 688999998521 12234677788888999999999999999999999
Q ss_pred HHHHHHHH
Q 027438 170 TVVTEIYN 177 (223)
Q Consensus 170 ~l~~~~~~ 177 (223)
+++..+++
T Consensus 160 ~l~~~l~~ 167 (182)
T cd04128 160 IVLAKAFD 167 (182)
T ss_pred HHHHHHHh
Confidence 99988765
No 45
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.8e-33 Score=205.30 Aligned_cols=162 Identities=49% Similarity=0.842 Sum_probs=146.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEE
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 92 (223)
+.+||+|+|++|+|||||++++.++.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 56999999999999999999999988877777787777777778888888899999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEeccCCCCCHHHHHHHH
Q 027438 93 VYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l 171 (223)
|||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+++..+++..++...++ .++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999776656799999999999987777888888899988886 58999999999999999999
Q ss_pred HHH
Q 027438 172 VTE 174 (223)
Q Consensus 172 ~~~ 174 (223)
++.
T Consensus 162 ~~~ 164 (165)
T cd01864 162 ATE 164 (165)
T ss_pred HHh
Confidence 864
No 46
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=2.5e-33 Score=208.11 Aligned_cols=160 Identities=26% Similarity=0.474 Sum_probs=140.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEE
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 93 (223)
.+||+|+|++|||||||++++.++.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 379999999999999999999999988888888776553 3566788889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcC-CeEEEeccC
Q 027438 94 YDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQG-LFFMETSAL 159 (223)
Q Consensus 94 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 159 (223)
||++++.+|+.+. .|+..+..... +.|+++|+||+|+.+. +.+..+++..+++..+ +.|+++||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999996 59888876543 6999999999998643 4577888899998887 689999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 027438 160 DSSNVTAAFQTVVTEI 175 (223)
Q Consensus 160 ~~~~i~~~~~~l~~~~ 175 (223)
+|.|++++|+.++..+
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998754
No 47
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=4.5e-33 Score=212.83 Aligned_cols=163 Identities=28% Similarity=0.498 Sum_probs=142.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+|+|++|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.||||+|++.|..++..+++.+|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999998888888876654 56678899999999999999999999999999999999999
Q ss_pred ECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEeccCC
Q 027438 95 DISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFMETSALD 160 (223)
Q Consensus 95 d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (223)
|++++++|+.+ ..|...+.... .+.|++||+||+|+.+. ..++.+++..+++..++ +|++|||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 99999999999 56887776554 37999999999998642 13778899999999996 899999999
Q ss_pred CCC-HHHHHHHHHHHHHHHH
Q 027438 161 SSN-VTAAFQTVVTEIYNIL 179 (223)
Q Consensus 161 ~~~-i~~~~~~l~~~~~~~~ 179 (223)
+.+ |+++|+.++...+...
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 160 SERSVRDVFHVATVASLGRG 179 (222)
T ss_pred CCcCHHHHHHHHHHHHHhcc
Confidence 985 9999999988765433
No 48
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=1.9e-32 Score=206.51 Aligned_cols=164 Identities=33% Similarity=0.588 Sum_probs=143.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 93 (223)
+||+|+|++|+|||||+++|.++.+.. .+.++.+..+....+.+++..+.+.+||++|.+.+..++..+++.+|++|+|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988764 5677777777777888899999999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC----cccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027438 94 YDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA----REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 169 (223)
||++++.+|+.+..|+..+..... +.|+++|+||+|+.+. ..+..+++..++...+++++++||+++.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEE-HCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCC-CCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999876543 6899999999998642 34556778888888899999999999999999999
Q ss_pred HHHHHHHHHH
Q 027438 170 TVVTEIYNIL 179 (223)
Q Consensus 170 ~l~~~~~~~~ 179 (223)
+|++.+.+..
T Consensus 160 ~i~~~~~~~~ 169 (193)
T cd04118 160 KVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHhc
Confidence 9998886443
No 49
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=7.4e-33 Score=202.87 Aligned_cols=160 Identities=53% Similarity=0.872 Sum_probs=147.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888877888788888788888888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027438 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...++.++++||+++.|++++|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998876666689999999999998777788899999999999999999999999999999999864
No 50
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=7.2e-33 Score=212.42 Aligned_cols=165 Identities=28% Similarity=0.513 Sum_probs=146.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEE
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 90 (223)
+...+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++++|++
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence 36779999999999999999999999988888889988888887887888889999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027438 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
|+|||++++.+|+.+..|+..+..... +.|+++|+||+|+.. +.+..++. .++...++.||++||++|.|++++|++
T Consensus 90 ilvfD~~~~~s~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~ 166 (219)
T PLN03071 90 IIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY 166 (219)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHH
Confidence 999999999999999999999976654 799999999999864 34444554 677778899999999999999999999
Q ss_pred HHHHHHHH
Q 027438 171 VVTEIYNI 178 (223)
Q Consensus 171 l~~~~~~~ 178 (223)
|+..+.+.
T Consensus 167 l~~~~~~~ 174 (219)
T PLN03071 167 LARKLAGD 174 (219)
T ss_pred HHHHHHcC
Confidence 99888644
No 51
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.3e-32 Score=206.44 Aligned_cols=163 Identities=29% Similarity=0.502 Sum_probs=139.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEEC-CEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 93 (223)
+||+|+|++|||||||+++|.++.+...+.++.+..+.. .+... +..+.+.+|||||++.+..++..+++.+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999998877777776665543 34454 6788999999999999999999999999999999
Q ss_pred EECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCC----cccCHHHHHHHHHHcCC-eEEEeccCCCCCHHHH
Q 027438 94 YDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA----REVTTAEGKALAEAQGL-FFMETSALDSSNVTAA 167 (223)
Q Consensus 94 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~ 167 (223)
||++++.+|+.+. .|+..+.... .+.|+++|+||.|+... +.+..+++.+++...++ +++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999995 5988876544 37899999999998653 24678889999999998 8999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027438 168 FQTVVTEIYNIL 179 (223)
Q Consensus 168 ~~~l~~~~~~~~ 179 (223)
|+.+++.+++..
T Consensus 159 f~~l~~~~~~~~ 170 (187)
T cd04132 159 FDTAIEEALKKE 170 (187)
T ss_pred HHHHHHHHHhhh
Confidence 999998876443
No 52
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=7.4e-33 Score=203.11 Aligned_cols=160 Identities=36% Similarity=0.575 Sum_probs=140.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+++|++|||||||++++.++.+...+.++.+ ......+.+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999888777777755 444566778888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027438 95 DISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
|++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++.++++++++||++|.|++++|++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999886643 347999999999999766667777888888888899999999999999999999986
Q ss_pred HH
Q 027438 174 EI 175 (223)
Q Consensus 174 ~~ 175 (223)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 54
No 53
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=1.6e-32 Score=201.41 Aligned_cols=163 Identities=58% Similarity=0.953 Sum_probs=148.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999998887777788888887788888888889999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027438 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
|++++.+++.+..|+..+......+.|+++|+||+|+....++..+.+..++...+++++++|+++|.|++++|++|++.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999877765589999999999988766778888888999999999999999999999999999988
Q ss_pred HHH
Q 027438 175 IYN 177 (223)
Q Consensus 175 ~~~ 177 (223)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 754
No 54
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-33 Score=189.89 Aligned_cols=175 Identities=47% Similarity=0.819 Sum_probs=165.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEE
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 90 (223)
+.+.++-+|+|+-|+|||+|++.+...++......++|+++....+.+.+..+.+++|||+|+++++.....+++.+.+.
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga 87 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 87 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027438 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
+.|+|++.+.+++.+..|+.......+.+..+++++||.|+...+++..+++++|+...++.|+++||++|.|+++.|-.
T Consensus 88 lmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle 167 (215)
T KOG0097|consen 88 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLE 167 (215)
T ss_pred eEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHH
Confidence 99999999999999999999998888778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhh
Q 027438 171 VVTEIYNILSRKVMI 185 (223)
Q Consensus 171 l~~~~~~~~~~~~~~ 185 (223)
.+.+++.++..-.+.
T Consensus 168 ~akkiyqniqdgsld 182 (215)
T KOG0097|consen 168 TAKKIYQNIQDGSLD 182 (215)
T ss_pred HHHHHHHhhhcCccc
Confidence 999998887765543
No 55
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.6e-32 Score=202.22 Aligned_cols=160 Identities=31% Similarity=0.593 Sum_probs=141.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+++|++|||||||++++..+.+...+.++.+.+.....+..++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988887778888888887777777888899999999999999989999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027438 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
|++++.+++.+..|+..+..... +.|+++|+||+|+.+ .... .+...++...++++|++||++|.|++++|++|+..
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999987765 799999999999874 3333 34456777778899999999999999999999987
Q ss_pred HHH
Q 027438 175 IYN 177 (223)
Q Consensus 175 ~~~ 177 (223)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 753
No 56
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=2.3e-32 Score=202.07 Aligned_cols=162 Identities=35% Similarity=0.643 Sum_probs=143.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEE
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD 95 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d 95 (223)
||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999988888998888887888888889999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027438 96 ISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDARE--VTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 96 ~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
++++.+++.+..|+..+... .....|+++|+||+|+.+... ...+++..++...+++++++||++|.|++++|+.|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999987654 344578999999999865433 345667788888899999999999999999999999
Q ss_pred HHHHH
Q 027438 173 TEIYN 177 (223)
Q Consensus 173 ~~~~~ 177 (223)
+.+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 87754
No 57
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=1.6e-32 Score=201.22 Aligned_cols=158 Identities=37% Similarity=0.658 Sum_probs=143.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEEC--CEEEEEEEEeCCCcchhhcchHhhhcCCcEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN--GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 92 (223)
+||+++|++|+|||||++++.++.+...+.++.+.++....+.+. +..+.+++|||||++.+..++..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999988887778888887766666676 778899999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027438 93 VYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
|||++++.+++.+..|+..+..... +.|+++|+||+|+.....+..+++..+++..+++++++||++|.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999876544 799999999999987777888889999999999999999999999999999987
Q ss_pred H
Q 027438 173 T 173 (223)
Q Consensus 173 ~ 173 (223)
.
T Consensus 160 ~ 160 (162)
T cd04106 160 E 160 (162)
T ss_pred H
Confidence 5
No 58
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=8.3e-32 Score=205.79 Aligned_cols=170 Identities=44% Similarity=0.769 Sum_probs=146.6
Q ss_pred cccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCC
Q 027438 8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (223)
Q Consensus 8 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 87 (223)
....+..+||+|+|++|||||||+++|.+..+ ..+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+
T Consensus 8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 86 (211)
T PLN03118 8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNA 86 (211)
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 34556789999999999999999999998776 45567777777777777888889999999999999999999999999
Q ss_pred cEEEEEEECCCHhhHHHHHH-HHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 027438 88 VGALLVYDISRRQTFDSIGR-WLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVT 165 (223)
Q Consensus 88 d~vi~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 165 (223)
|++|+|||++++.+|+.+.. |...+.... ..+.|+++|+||+|+.....+..++...++...+++||++||+++.|++
T Consensus 87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~ 166 (211)
T PLN03118 87 QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVE 166 (211)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999965 766665432 3468999999999998767777888888888899999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027438 166 AAFQTVVTEIYNI 178 (223)
Q Consensus 166 ~~~~~l~~~~~~~ 178 (223)
++|++|...+.+.
T Consensus 167 ~l~~~l~~~~~~~ 179 (211)
T PLN03118 167 QCFEELALKIMEV 179 (211)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888543
No 59
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.6e-32 Score=201.73 Aligned_cols=161 Identities=34% Similarity=0.560 Sum_probs=141.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEE
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 93 (223)
++||+++|++|||||||++++..+.+...+.++++..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|+|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 37999999999999999999998887777777766544 45667788889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027438 94 YDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
||++++.+|+.+..|+..+... ...+.|+++|+||+|+.....+..+++..+++..+++++++||++|.|++++|.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999999988654 335799999999999987666777778888888899999999999999999999998
Q ss_pred HHH
Q 027438 173 TEI 175 (223)
Q Consensus 173 ~~~ 175 (223)
+.+
T Consensus 160 ~~l 162 (164)
T cd04175 160 RQI 162 (164)
T ss_pred HHh
Confidence 755
No 60
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=3.4e-32 Score=201.09 Aligned_cols=163 Identities=39% Similarity=0.688 Sum_probs=145.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEE
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 90 (223)
++..+||+++|++|||||||++++.++.+.+.+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 35679999999999999999999999888887778888877777888899999999999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcC----CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEeccCCCCCHH
Q 027438 91 LLVYDISRRQTFDSIGRWLNELHTHS----DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSSNVT 165 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 165 (223)
|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+. .+.+..+++.++++..+. +++++||++|.|+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 99999999999999999998876543 2468999999999987 356778889999988874 79999999999999
Q ss_pred HHHHHHHHH
Q 027438 166 AAFQTVVTE 174 (223)
Q Consensus 166 ~~~~~l~~~ 174 (223)
++|+.+++.
T Consensus 161 ~~~~~~~~~ 169 (170)
T cd04116 161 AAFEEAVRR 169 (170)
T ss_pred HHHHHHHhh
Confidence 999999864
No 61
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=3.3e-32 Score=199.56 Aligned_cols=160 Identities=35% Similarity=0.609 Sum_probs=139.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+++|++|||||||++++.++.+.+...++.+.+.......+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999887777777677776667778888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027438 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
|++++.+++.+..|+..+..... +.|+++|+||+|+... ..++...++...+++++++||++|.|++++|+.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999876543 6899999999998532 2344566777778999999999999999999999988
Q ss_pred HHHH
Q 027438 175 IYNI 178 (223)
Q Consensus 175 ~~~~ 178 (223)
+.++
T Consensus 157 ~~~~ 160 (161)
T cd04124 157 AVSY 160 (161)
T ss_pred HHhc
Confidence 7664
No 62
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=3e-32 Score=200.05 Aligned_cols=161 Identities=36% Similarity=0.569 Sum_probs=141.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEE
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 93 (223)
.++|+++|++|+|||||++++..+.+...+.++.+ ......+.+++..+.+.||||||++.+..++..+++++|++|+|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 37999999999999999999999988777777654 45556777888888999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027438 94 YDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.....+...++..++...+++++++||++|.|++++|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999998886653 35799999999999976666777778888888889999999999999999999998
Q ss_pred HHH
Q 027438 173 TEI 175 (223)
Q Consensus 173 ~~~ 175 (223)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 643
No 63
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-34 Score=200.59 Aligned_cols=175 Identities=38% Similarity=0.688 Sum_probs=159.5
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEEC---------CEEEEEEEEeCCCcchhhcc
Q 027438 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN---------GKEVKAQIWDTAGQERFRAV 79 (223)
Q Consensus 9 ~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~D~~G~~~~~~~ 79 (223)
.++++.|+.+.+|++|+|||||+.+++.+.+......+.|+++..+.+.++ +..+.+++|||+|+++++++
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 356788999999999999999999999999998888999999888877663 35678999999999999999
Q ss_pred hHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEecc
Q 027438 80 TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSA 158 (223)
Q Consensus 80 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (223)
+.++++.+=+++++||+++..||-+++.|+.++..+. ..++.+|+++||+|+.+.+.++.+++.++++++++|||++||
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA 163 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSA 163 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecc
Confidence 9999999999999999999999999999999986652 346789999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhh
Q 027438 159 LDSSNVTAAFQTVVTEIYNILSRKV 183 (223)
Q Consensus 159 ~~~~~i~~~~~~l~~~~~~~~~~~~ 183 (223)
-+|.|+++..+.|..++++++.+-.
T Consensus 164 ~tg~Nv~kave~LldlvM~Rie~~v 188 (219)
T KOG0081|consen 164 CTGTNVEKAVELLLDLVMKRIEQCV 188 (219)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988887655
No 64
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=3.6e-32 Score=201.71 Aligned_cols=158 Identities=30% Similarity=0.522 Sum_probs=137.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+|+|++|||||||+.++..+.+...+.++.+. .....+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 79999999999999999999998888777787653 33445667888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEeccCC
Q 027438 95 DISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFMETSALD 160 (223)
Q Consensus 95 d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (223)
|++++.+|+.+. .|+..+..... +.|+++|+||+|+.+. +.++.+++..+++..+. ++++|||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999995 69888766543 7999999999998542 24788999999999985 899999999
Q ss_pred CCCHHHHHHHHHHH
Q 027438 161 SSNVTAAFQTVVTE 174 (223)
Q Consensus 161 ~~~i~~~~~~l~~~ 174 (223)
|.|++++|+.++..
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999998753
No 65
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=5.6e-32 Score=203.32 Aligned_cols=160 Identities=31% Similarity=0.518 Sum_probs=138.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
.||+|+|++|||||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999999887777777665543 45567788899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHcC-CeEEEeccCC
Q 027438 95 DISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDAR------------EVTTAEGKALAEAQG-LFFMETSALD 160 (223)
Q Consensus 95 d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~ 160 (223)
|++++.+|+.+. .|+..+..... +.|+++|+||+|+.+.+ .+..+++..++...+ ++|++|||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCP-GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999986 69988876544 79999999999987543 355677788888777 6899999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 027438 161 SSNVTAAFQTVVTEIY 176 (223)
Q Consensus 161 ~~~i~~~~~~l~~~~~ 176 (223)
|.|++++|++|++.+.
T Consensus 159 ~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 159 NRGVNEAFTEAARVAL 174 (189)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998775
No 66
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=7.6e-32 Score=197.38 Aligned_cols=160 Identities=40% Similarity=0.753 Sum_probs=145.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+++|++|||||||++++++..+...+.++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++|+||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999888888888888888888888888889999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027438 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
|++++.+|+.+..|+..+......+.|+++|+||+|+.+......++...+++..+++++++||+++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999999876655579999999999997666778888888888889999999999999999999999764
No 67
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=7.2e-32 Score=198.14 Aligned_cols=161 Identities=40% Similarity=0.610 Sum_probs=140.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+|+|++|||||||++++.+..+...+.++.+ +.......+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999999888777666654 334556667888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027438 95 DISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
|++++.+|+.+..|+..+... .....|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|++|+.
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 999999999999998887654 3336899999999999876677788888888888999999999999999999999987
Q ss_pred HHH
Q 027438 174 EIY 176 (223)
Q Consensus 174 ~~~ 176 (223)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 653
No 68
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=7.6e-32 Score=198.37 Aligned_cols=158 Identities=30% Similarity=0.433 Sum_probs=137.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+++|++|||||||+++++++.+...+.++.+..+ ...+..+...+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7899999999999999999999988777677755443 445566778889999999999999988888999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcC---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027438 95 DISRRQTFDSIGRWLNELHTHS---DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~---~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..+++..++...++.++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 9999999999999988776542 2479999999999998767777888888888889999999999999999999998
Q ss_pred HH
Q 027438 172 VT 173 (223)
Q Consensus 172 ~~ 173 (223)
+.
T Consensus 161 ~~ 162 (165)
T cd04140 161 LN 162 (165)
T ss_pred Hh
Confidence 74
No 69
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=1.1e-31 Score=198.52 Aligned_cols=162 Identities=41% Similarity=0.740 Sum_probs=145.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhh-cchHhhhcCCcEEEE
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR-AVTSAYYRGAVGALL 92 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-~~~~~~~~~~d~vi~ 92 (223)
.++|+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++++|++|+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4899999999999999999999988877778888888877888889989999999999998876 578888999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCC---CCCHHHHH
Q 027438 93 VYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALD---SSNVTAAF 168 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~ 168 (223)
|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+...+++..+++..++...+++|+++||++ +.+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999999887653 34799999999999987778888889999999999999999999 89999999
Q ss_pred HHHHHHH
Q 027438 169 QTVVTEI 175 (223)
Q Consensus 169 ~~l~~~~ 175 (223)
..+++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9988655
No 70
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=1.2e-31 Score=196.27 Aligned_cols=160 Identities=34% Similarity=0.567 Sum_probs=139.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEE
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 93 (223)
.+||+++|++|||||||+++|.++.+...+.++.+..+ .....+++..+.+.+|||+|++.+..++..+++.+|++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 37999999999999999999999888777777765443 45566788888899999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027438 94 YDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+ +....+++..+++..+++++++||++|.|++++|++|+
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999998887653 34789999999999876 45667788888888899999999999999999999998
Q ss_pred HHH
Q 027438 173 TEI 175 (223)
Q Consensus 173 ~~~ 175 (223)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 653
No 71
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=1.8e-31 Score=195.80 Aligned_cols=162 Identities=45% Similarity=0.818 Sum_probs=147.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEE
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 93 (223)
.+||+++|++|||||||+++|.++.+.....++.+..+....+.+++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999988776777778777778888899999999999999999988899999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027438 94 YDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
+|++++.+++.+..|+..+........|+++++||+|+........++...++...+++++++||++|.|++++|++|++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999987776567999999999998866677788888889988999999999999999999999987
Q ss_pred HH
Q 027438 174 EI 175 (223)
Q Consensus 174 ~~ 175 (223)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 65
No 72
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=9.7e-32 Score=203.03 Aligned_cols=166 Identities=19% Similarity=0.246 Sum_probs=137.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhc--------chHhhhcC
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA--------VTSAYYRG 86 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~~ 86 (223)
+||+|+|++|||||||++++.++.+...+.++.+.+.....+.+++..+.+.+|||||...+.. .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999988877788877666666677888889999999999654321 12345689
Q ss_pred CcEEEEEEECCCHhhHHHHHHHHHHHhhcC---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HcCCeEEEeccCCCC
Q 027438 87 AVGALLVYDISRRQTFDSIGRWLNELHTHS---DMNVVTILVGNKSDLKDAREVTTAEGKALAE-AQGLFFMETSALDSS 162 (223)
Q Consensus 87 ~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~piilv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 162 (223)
+|++|+|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++. ..+++||++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999998886653 4579999999999997666666666766654 568999999999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 027438 163 NVTAAFQTVVTEIYNILS 180 (223)
Q Consensus 163 ~i~~~~~~l~~~~~~~~~ 180 (223)
|++++|+.++..++.+-.
T Consensus 161 ~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 161 HILLLFKELLISATTRGR 178 (198)
T ss_pred CHHHHHHHHHHHhhccCC
Confidence 999999999987764433
No 73
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=1.9e-31 Score=195.83 Aligned_cols=161 Identities=35% Similarity=0.556 Sum_probs=140.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEE
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 93 (223)
.+||+++|++|+|||||++++.++.+...+.++.+.. ......+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 4799999999999999999999988766666665533 344556788889999999999999999999999999999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027438 94 YDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
||++++.+|+.+..|+..+... ...+.|+++|+||+|+.....+..+++..+++..+++++++||++|.|++++|++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999999888654 334789999999999987666777788889888899999999999999999999998
Q ss_pred HHH
Q 027438 173 TEI 175 (223)
Q Consensus 173 ~~~ 175 (223)
..+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 654
No 74
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=1.5e-31 Score=201.76 Aligned_cols=156 Identities=28% Similarity=0.528 Sum_probs=139.6
Q ss_pred EcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCH
Q 027438 20 IGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRR 99 (223)
Q Consensus 20 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~ 99 (223)
+|++|||||||+++++.+.+...+.++.+.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888778888988888888888888999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027438 100 QTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNI 178 (223)
Q Consensus 100 ~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 178 (223)
.+|+.+..|+..+..... +.|+++|+||+|+.. +.+..+. ..++...++.|++|||++|.|++++|++|+..+.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhCC-CCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999987654 799999999999864 3444444 467788899999999999999999999999888654
No 75
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=3.7e-31 Score=194.38 Aligned_cols=160 Identities=34% Similarity=0.591 Sum_probs=140.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCCcceeeeEEEEEEEC-CEEEEEEEEeCCCcchhhcchHhhhcCCcEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARD--EFYPNSKSTIGVEFQTQKMDIN-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 91 (223)
+||+++|++|||||||++++.+. .+...+.++.+.++....+.++ +..+.+.+|||||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 5667777888888776666664 57789999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027438 92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+..++...+++.+....+++++++||+++.|++++|+.|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999999987664 368999999999997766777777777888888999999999999999999999
Q ss_pred HHHH
Q 027438 172 VTEI 175 (223)
Q Consensus 172 ~~~~ 175 (223)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8764
No 76
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=2e-31 Score=200.64 Aligned_cols=157 Identities=26% Similarity=0.417 Sum_probs=129.1
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHHcCC-----CCCCCCCccee-eeEEEE--------EEECCEEEEEEEEeCCCcchhhc
Q 027438 14 LFKVVLIGDSAVGKSNLLA-RFARDE-----FYPNSKSTIGV-EFQTQK--------MDINGKEVKAQIWDTAGQERFRA 78 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~D~~G~~~~~~ 78 (223)
.+||+++|+.|||||||+. ++.++. +...+.|+++. +..... ..+++..+.+.||||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999995 665543 34456677652 222222 256888999999999998753
Q ss_pred chHhhhcCCcEEEEEEECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCC-------------------CcccC
Q 027438 79 VTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD-------------------AREVT 138 (223)
Q Consensus 79 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~D~~~-------------------~~~~~ 138 (223)
....+++++|++|+|||++++.||+.+. .|+..+..... +.|+++|+||+|+.+ .+.++
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4566889999999999999999999996 69998876654 689999999999864 36788
Q ss_pred HHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027438 139 TAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
.++++.+++.++++|++|||++|.|++++|+.+++
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999875
No 77
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=1.1e-30 Score=191.05 Aligned_cols=161 Identities=37% Similarity=0.684 Sum_probs=143.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+++|++|+|||||++++.++.+.....++.+.......+.+.+..+.+.+||++|++.+..++..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999998887666666666666666777788889999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027438 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
|++++.+++.+..|+..+......+.|+++|+||+|+.....+..++...++...+++++++|++++.|+++++++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999877765579999999999998766777788888888889999999999999999999999876
Q ss_pred H
Q 027438 175 I 175 (223)
Q Consensus 175 ~ 175 (223)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 4
No 78
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=5e-31 Score=195.56 Aligned_cols=158 Identities=30% Similarity=0.560 Sum_probs=137.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEEC
Q 027438 17 VVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDI 96 (223)
Q Consensus 17 v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~ 96 (223)
|+|+|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999988777777755443 44567788889999999999999999999999999999999999
Q ss_pred CCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEeccCCCC
Q 027438 97 SRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFMETSALDSS 162 (223)
Q Consensus 97 ~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 162 (223)
+++.+|+.+. .|+..+..... +.|+++|+||+|+... ..++.+++..+++..+. .++++||++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999995 69998876654 7999999999998652 23778888899999987 89999999999
Q ss_pred CHHHHHHHHHHHHH
Q 027438 163 NVTAAFQTVVTEIY 176 (223)
Q Consensus 163 ~i~~~~~~l~~~~~ 176 (223)
|++++|+.+++.++
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999987763
No 79
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=1e-30 Score=193.30 Aligned_cols=164 Identities=37% Similarity=0.699 Sum_probs=144.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+|+|++|||||||++++.+..+.....++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999887777777787777777888888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcC----CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CeEEEeccCCCCCHHHHHH
Q 027438 95 DISRRQTFDSIGRWLNELHTHS----DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~ 169 (223)
|++++.+++.+..|...+.... ..+.|+++|+||+|+..+.....++...++...+ .+++++|+++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 9999999999999988764433 2369999999999998656667788888888877 7899999999999999999
Q ss_pred HHHHHHHHH
Q 027438 170 TVVTEIYNI 178 (223)
Q Consensus 170 ~l~~~~~~~ 178 (223)
++.+.+++.
T Consensus 161 ~i~~~~~~~ 169 (172)
T cd01862 161 TIARKALEQ 169 (172)
T ss_pred HHHHHHHhc
Confidence 999888765
No 80
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.6e-30 Score=191.83 Aligned_cols=165 Identities=44% Similarity=0.805 Sum_probs=146.7
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEE
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 90 (223)
....++|+++|++|||||||++++.++.+.+...++.+.+.....+.+.+..+.+.+||++|+..+...+..+++.+|++
T Consensus 4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 35679999999999999999999998887777777777777777788888888999999999999998889999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027438 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++..+..+.+......+++++||++|.|++++|++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 163 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD 163 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence 99999999999999999999887766667999999999999876777777778888877888999999999999999999
Q ss_pred HHHHH
Q 027438 171 VVTEI 175 (223)
Q Consensus 171 l~~~~ 175 (223)
|...+
T Consensus 164 i~~~~ 168 (169)
T cd04114 164 LACRL 168 (169)
T ss_pred HHHHh
Confidence 98754
No 81
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=6e-31 Score=192.07 Aligned_cols=153 Identities=20% Similarity=0.362 Sum_probs=129.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+++|+.|||||||++++..+.+...+.++ +..+ ...+.+++..+.+.+||++|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999988776655444 3333 45677888889999999999864 34668899999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCC-CCCcEEEEEeCCCCCC--CcccCHHHHHHHHHHc-CCeEEEeccCCCCCHHHHHHH
Q 027438 95 DISRRQTFDSIGRWLNELHTHSD-MNVVTILVGNKSDLKD--AREVTTAEGKALAEAQ-GLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~D~~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
|++++.+|+.+..|+..+..... .+.|+++|+||.|+.. .++++.++++++++.. ++.|++|||++|.|++++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999876643 4689999999999853 4678888889998876 589999999999999999999
Q ss_pred HHHH
Q 027438 171 VVTE 174 (223)
Q Consensus 171 l~~~ 174 (223)
+++.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8754
No 82
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=7.2e-31 Score=204.18 Aligned_cols=160 Identities=25% Similarity=0.441 Sum_probs=138.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+|+|++|||||||+++++++.+...+.++++ ++....+.+++..+.+.||||+|++.+..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999888777777765 555667788889999999999999999888888899999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhc---------CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cCCeEEEeccCCCCCH
Q 027438 95 DISRRQTFDSIGRWLNELHTH---------SDMNVVTILVGNKSDLKDAREVTTAEGKALAEA-QGLFFMETSALDSSNV 164 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~---------~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i 164 (223)
|++++.+|+.+..|+..+... ...+.|+|+|+||+|+.+.+++..+++..++.. .++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999999888643 224689999999999986667777887777653 4678999999999999
Q ss_pred HHHHHHHHHHH
Q 027438 165 TAAFQTVVTEI 175 (223)
Q Consensus 165 ~~~~~~l~~~~ 175 (223)
+++|++|+..+
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999998644
No 83
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.98 E-value=2e-30 Score=189.89 Aligned_cols=159 Identities=52% Similarity=0.898 Sum_probs=142.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+++|++|||||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998887767788788777777778888899999999999999988999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027438 95 DISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+.. .....++...++...+++++++||++|.|++++++.+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 9999999999999999887663 45799999999999974 456678888899999999999999999999999999886
Q ss_pred H
Q 027438 174 E 174 (223)
Q Consensus 174 ~ 174 (223)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
No 84
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.98 E-value=1.5e-30 Score=192.89 Aligned_cols=157 Identities=31% Similarity=0.552 Sum_probs=136.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+++|++|+|||||++++.++.+...+.++. .+.....+.+++..+.+.+||+||++.+..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999888877777764 4555566778888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHcCC-eEEEeccCC
Q 027438 95 DISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD------------AREVTTAEGKALAEAQGL-FFMETSALD 160 (223)
Q Consensus 95 d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (223)
|++++.+|+.+. .|+..+..... +.|+++|+||+|+.+ .+.+..+++..+++..++ .++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNP-KAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999984 79888875433 689999999999863 346778889999999888 799999999
Q ss_pred CCCHHHHHHHHHH
Q 027438 161 SSNVTAAFQTVVT 173 (223)
Q Consensus 161 ~~~i~~~~~~l~~ 173 (223)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998763
No 85
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.98 E-value=2.2e-30 Score=191.10 Aligned_cols=161 Identities=34% Similarity=0.585 Sum_probs=141.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
++|+++|++|||||||++++.++.+...+.++.+.. ....+.+++..+.+.+|||||++.+..++..+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 789999999999999999999988877777776543 3566677888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CeEEEeccCCCCCHHHHHHHHH
Q 027438 95 DISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
|++++.+++.+..|...+... ...+.|+++++||.|+.+.+.+..++...+++..+ ++++++||+++.|++++|++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 999999999999999888654 23479999999999998767777788888888887 7899999999999999999998
Q ss_pred HHHH
Q 027438 173 TEIY 176 (223)
Q Consensus 173 ~~~~ 176 (223)
..++
T Consensus 161 ~~~~ 164 (168)
T cd04177 161 RQII 164 (168)
T ss_pred HHHh
Confidence 7664
No 86
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.98 E-value=8.3e-31 Score=192.79 Aligned_cols=159 Identities=35% Similarity=0.551 Sum_probs=135.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcch-hhcchHhhhcCCcEEEEEE
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-FRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~d~vi~v~ 94 (223)
+|+|+|++|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+||+||+.. .......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 589999999999999999998877666666654333 45567788889999999999885 3445677889999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcC--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCC-CCHHHHHHHH
Q 027438 95 DISRRQTFDSIGRWLNELHTHS--DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDS-SNVTAAFQTV 171 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~~~~~l 171 (223)
|++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++..+++|+++||++| .|++++|+.|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999998887653 347999999999998776778888889999999999999999999 5999999999
Q ss_pred HHHH
Q 027438 172 VTEI 175 (223)
Q Consensus 172 ~~~~ 175 (223)
++.+
T Consensus 160 ~~~~ 163 (165)
T cd04146 160 CREV 163 (165)
T ss_pred HHHH
Confidence 8765
No 87
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=1.2e-30 Score=192.79 Aligned_cols=163 Identities=19% Similarity=0.242 Sum_probs=140.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEE
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 90 (223)
...+||+++|++|||||||+++++++.+. ..+.++.+..+....+.+++..+.+.+||++|.+.+..++..+++.+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 35699999999999999999999999887 77788888777767777888888999999999999988899999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEeccCCCCCHHHHHH
Q 027438 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~ 169 (223)
|+|+|++++.+|+.+..|+..+... .+.|+++|+||+|+.+.......+..++++..++. ++++||+++.|++++|+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~ 159 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT 159 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence 9999999999999999998876432 26899999999998755444445566777888874 79999999999999999
Q ss_pred HHHHHHH
Q 027438 170 TVVTEIY 176 (223)
Q Consensus 170 ~l~~~~~ 176 (223)
.|++.++
T Consensus 160 ~l~~~~~ 166 (169)
T cd01892 160 KLATAAQ 166 (169)
T ss_pred HHHHHhh
Confidence 9988764
No 88
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.98 E-value=2e-30 Score=199.22 Aligned_cols=165 Identities=27% Similarity=0.363 Sum_probs=139.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhc-CCcEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYR-GAVGALL 92 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~-~~d~vi~ 92 (223)
+||+++|++|||||||+++|.++.+. ..+.++.+.++....+.+++..+.+.+||++|++. .....+++ .+|++|+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999888775 55556655466677788888899999999999872 23445666 8999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027438 93 VYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++|
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999999886653 3479999999999998777788888888988889999999999999999999999
Q ss_pred HHHHHHHHhh
Q 027438 172 VTEIYNILSR 181 (223)
Q Consensus 172 ~~~~~~~~~~ 181 (223)
+..+......
T Consensus 159 ~~~~~~~~~~ 168 (221)
T cd04148 159 VRQIRLRRDS 168 (221)
T ss_pred HHHHHhhhcc
Confidence 9877654444
No 89
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.98 E-value=2.1e-30 Score=192.16 Aligned_cols=159 Identities=30% Similarity=0.514 Sum_probs=136.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+++|++|+|||||++++.++.+...+.++.+ ......+.+++..+.+.+|||+|++.+...+..+++.+|++|+||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999888776666644 333445677888889999999999999999999999999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEeccCC
Q 027438 95 DISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFMETSALD 160 (223)
Q Consensus 95 d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (223)
|++++.+|+.+. .|+..+... ..+.|+++|+||+|+.+. ..++.+++..+++..++ +++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999985 688888665 457999999999998643 25677888899998886 699999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027438 161 SSNVTAAFQTVVTEI 175 (223)
Q Consensus 161 ~~~i~~~~~~l~~~~ 175 (223)
|.|++++|+.++..+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998765
No 90
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=4.3e-30 Score=186.92 Aligned_cols=158 Identities=54% Similarity=0.926 Sum_probs=144.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+++|++|||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++|+|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888887888888888888888888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027438 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
|++++.+++.+..|+..+........|+++|+||+|+........++.+.++...+.+++++|++++.|+++++++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999998877656799999999999975566778888999988899999999999999999999986
No 91
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=1.9e-32 Score=185.20 Aligned_cols=160 Identities=48% Similarity=0.775 Sum_probs=147.6
Q ss_pred EEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEEC
Q 027438 18 VLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDI 96 (223)
Q Consensus 18 ~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~ 96 (223)
+++|++++|||+|+-++..+.+.. +...+.|+++..+.+..++..+.+++|||+|++++++....+++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 478999999999998888776653 4567889999999999999999999999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027438 97 SRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 97 ~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 176 (223)
.+..||++++.|+.++..+......+.+++||+|+..++.+..++.+.+++.+++||+++||++|.|++..|-.|++.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999999999999998878899999999999887889999999999999999999999999999999999987764
Q ss_pred H
Q 027438 177 N 177 (223)
Q Consensus 177 ~ 177 (223)
+
T Consensus 161 k 161 (192)
T KOG0083|consen 161 K 161 (192)
T ss_pred H
Confidence 3
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=2.8e-29 Score=184.07 Aligned_cols=161 Identities=37% Similarity=0.576 Sum_probs=139.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+++|++|||||||++++.+..+...+.++.+.. .......++..+.+.+||+||+..+...+..+++.++++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 589999999999999999999988876666664433 3455667888899999999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027438 95 DISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+.........+...++..++++++++||++|.|++++|+++++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999999988887653 347999999999999765556677778888888999999999999999999999987
Q ss_pred HHH
Q 027438 174 EIY 176 (223)
Q Consensus 174 ~~~ 176 (223)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 663
No 93
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=2.4e-29 Score=183.69 Aligned_cols=158 Identities=37% Similarity=0.605 Sum_probs=139.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEE
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD 95 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d 95 (223)
||+|+|++|||||||++++++..+...+.++.+ +.....+.+.+..+.+.+||+||+..+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998877666666655 5555666677778899999999999998999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHhhcCC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027438 96 ISRRQTFDSIGRWLNELHTHSD-MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 96 ~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
++++.+++.+..|+..+..... ...|+++|+||+|+........+++..++...+++++++|++++.|++++|++|+..
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999888876544 579999999999998767778888999999888999999999999999999999864
No 94
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=6.5e-29 Score=184.35 Aligned_cols=159 Identities=31% Similarity=0.553 Sum_probs=134.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
.||+|+|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+...+..+|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 5899999999999999999999888777777765444 345677888889999999999999888888899999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCC-eEEEeccCC
Q 027438 95 DISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGL-FFMETSALD 160 (223)
Q Consensus 95 d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (223)
|++++.+|+.+. .|+..+..... +.|+++|+||+|+.+. ..+...+++.++...+. ++++|||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999985 68888765533 7899999999998642 23456777888887775 699999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027438 161 SSNVTAAFQTVVTEI 175 (223)
Q Consensus 161 ~~~i~~~~~~l~~~~ 175 (223)
|.|++++|++|++.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998654
No 95
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=7.8e-29 Score=185.95 Aligned_cols=161 Identities=31% Similarity=0.532 Sum_probs=134.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
.||+|+|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+.......+..+|+++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998877666666644433 345566778888999999999888877777889999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCC----------CcccCHHHHHHHHHHcCC-eEEEeccCCCC
Q 027438 95 DISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD----------AREVTTAEGKALAEAQGL-FFMETSALDSS 162 (223)
Q Consensus 95 d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 162 (223)
|++++.+|+.+. .|+..+..... ..|+++|+||+|+.. .+.+..+++..+++..++ .||+|||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999996 69998876654 599999999999854 234566788889999885 79999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027438 163 NVTAAFQTVVTEIYN 177 (223)
Q Consensus 163 ~i~~~~~~l~~~~~~ 177 (223)
|++++|+++.+.++.
T Consensus 160 ~v~~~f~~l~~~~~~ 174 (187)
T cd04129 160 GVDDVFEAATRAALL 174 (187)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999976643
No 96
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.97 E-value=2.4e-31 Score=188.57 Aligned_cols=192 Identities=28% Similarity=0.513 Sum_probs=175.5
Q ss_pred ccccccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhh
Q 027438 5 SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYY 84 (223)
Q Consensus 5 ~~~~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~ 84 (223)
...+.+.+..||++|+|..++||||+|++++-+-+...+..++|+++-...+.+.++.+++.+||++|++++..+..+++
T Consensus 11 am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyy 90 (246)
T KOG4252|consen 11 AMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYY 90 (246)
T ss_pred CCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHh
Confidence 34556678899999999999999999999999999999999999999888888888899999999999999999999999
Q ss_pred cCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 027438 85 RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNV 164 (223)
Q Consensus 85 ~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 164 (223)
+++.+.++||+-++..||+.+..|++.+..... .+|.++|-||+|+.+...+...+++.+++.+++.++.+|+++..|+
T Consensus 91 rgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV 169 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNV 169 (246)
T ss_pred ccccceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 999999999999999999999999999987766 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhccCCCC
Q 027438 165 TAAFQTVVTEIYNILSRKVMISQELKQKDSSSF 197 (223)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (223)
-.+|..|++++..++.+.....+..+..+|.++
T Consensus 170 ~~vF~YLaeK~~q~~kq~~~~~~~~q~sSsn~~ 202 (246)
T KOG4252|consen 170 MHVFAYLAEKLTQQKKQSLNANERKQSSSSNST 202 (246)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchhhccccCCCC
Confidence 999999999999999887766555555554443
No 97
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=1.5e-28 Score=183.77 Aligned_cols=166 Identities=21% Similarity=0.354 Sum_probs=131.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEE-CCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEE
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI-NGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 92 (223)
.++|+++|++|||||||++++.++.+... .++.+.+.....+.. ++..+.+.+|||+|++.+..++..+++.+|++|+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 58999999999999999999998877543 566666655554444 4467889999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH--H----cCCeEEEeccCCCCCHH
Q 027438 93 VYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAE--A----QGLFFMETSALDSSNVT 165 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~--~----~~~~~~~~Sa~~~~~i~ 165 (223)
|+|++++.+++.+..|+..+... ...+.|+++|+||+|+... ...++...+.. . .+++++++||++|.|++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 159 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ 159 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence 99999999999998898877654 2347999999999998642 33444444332 1 13468999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 027438 166 AAFQTVVTEIYNILSRK 182 (223)
Q Consensus 166 ~~~~~l~~~~~~~~~~~ 182 (223)
++|++|++.+.+.+...
T Consensus 160 ~l~~~l~~~l~~~~~~~ 176 (183)
T cd04152 160 EGLEKLYEMILKRRKML 176 (183)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999998886555443
No 98
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=1.8e-28 Score=185.53 Aligned_cols=160 Identities=28% Similarity=0.464 Sum_probs=133.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEE
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD 95 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d 95 (223)
||+++|++|||||||+++++++.+...+.++.. ......+.+.+..+.+.+||++|+..+..++..++..+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999888766666643 4455567778888899999999999998888899999999999999
Q ss_pred CCCHhhHHHHHHHHHHHhhcCC-CCCcEEEEEeCCCCCC-CcccCHHHHHHHHH-HcCCeEEEeccCCCCCHHHHHHHHH
Q 027438 96 ISRRQTFDSIGRWLNELHTHSD-MNVVTILVGNKSDLKD-AREVTTAEGKALAE-AQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 96 ~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
++++.+++.+..|+..+..... .+.|+++|+||+|+.. ...+..++...... ..+++++++||++|.|++++|++|+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988866543 4799999999999865 34455555554443 4567899999999999999999998
Q ss_pred HHHH
Q 027438 173 TEIY 176 (223)
Q Consensus 173 ~~~~ 176 (223)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 7663
No 99
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=2.8e-28 Score=181.81 Aligned_cols=162 Identities=35% Similarity=0.569 Sum_probs=137.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
.||+|+|++|+|||||++++.+..+.....++.+..+ ...+..++..+.+.+||+||+..+...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999998877665666644333 445566777888999999999999989999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027438 95 DISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
|+++..+++.+..|+..+... ...+.|+++|+||+|+...+.+..++...++...+++++++||+++.|+.++|+++..
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999988887654 3456899999999999766666677777888888899999999999999999999988
Q ss_pred HHHH
Q 027438 174 EIYN 177 (223)
Q Consensus 174 ~~~~ 177 (223)
.+.+
T Consensus 161 ~~~~ 164 (180)
T cd04137 161 EIEK 164 (180)
T ss_pred HHHH
Confidence 7643
No 100
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=1.3e-29 Score=186.36 Aligned_cols=153 Identities=20% Similarity=0.338 Sum_probs=125.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEE
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD 95 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d 95 (223)
+|+++|++|||||||+++|.+..+...+.++.+... ..+++..+.+.+||++|++.+..++..+++++|++|+|+|
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 489999999999999999998877777777776543 2344556889999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH----HHHHHHHHHcCCeEEEeccCC------CCCHH
Q 027438 96 ISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTT----AEGKALAEAQGLFFMETSALD------SSNVT 165 (223)
Q Consensus 96 ~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i~ 165 (223)
.+++.++..+..|+..+.... .+.|+++|+||+|+...+.+.. .++..+++..++.+|++||++ ++|++
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999999999988886544 4799999999999876543321 223455666788899998888 99999
Q ss_pred HHHHHHHH
Q 027438 166 AAFQTVVT 173 (223)
Q Consensus 166 ~~~~~l~~ 173 (223)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99998863
No 101
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=2.7e-28 Score=180.17 Aligned_cols=157 Identities=32% Similarity=0.579 Sum_probs=132.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+++|++|||||||+++|.++.+...+.++.. +........++..+.+.+||+||++.+.......++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6899999999999999999999888666666643 444455667888899999999999988888888889999999999
Q ss_pred ECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCCc-----------ccCHHHHHHHHHHcCC-eEEEeccCCC
Q 027438 95 DISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDAR-----------EVTTAEGKALAEAQGL-FFMETSALDS 161 (223)
Q Consensus 95 d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 161 (223)
|++++.+|... ..|+..+..... +.|+++|+||+|+.+.. .+..+++..++...++ +++++||++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 99999998887 458877766544 79999999999987643 3457778888888887 8999999999
Q ss_pred CCHHHHHHHHHH
Q 027438 162 SNVTAAFQTVVT 173 (223)
Q Consensus 162 ~~i~~~~~~l~~ 173 (223)
.|++++|++|++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999874
No 102
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=6.8e-29 Score=183.14 Aligned_cols=154 Identities=20% Similarity=0.391 Sum_probs=122.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEE
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 92 (223)
..++|+++|++|||||||+++|..+.+. .+.++.+.+.. .+.. ..+.+++|||||++.+..++..+++.+|++|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4589999999999999999999877664 34566665543 2222 45789999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEeccCCCCCHHH
Q 027438 93 VYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAE-----AQGLFFMETSALDSSNVTA 166 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~ 166 (223)
|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+ .+..+++..+.. ...++++++||++|.|+++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 99999999999998887776443 234689999999999864 245566665542 1234689999999999999
Q ss_pred HHHHHHH
Q 027438 167 AFQTVVT 173 (223)
Q Consensus 167 ~~~~l~~ 173 (223)
+|++|..
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9999864
No 103
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=1.6e-28 Score=181.43 Aligned_cols=155 Identities=22% Similarity=0.391 Sum_probs=125.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEE
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD 95 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d 95 (223)
||+++|+++||||||+++|.+..+. .+.+|.+.... .+.+ ..+.+.+||+||+..+...+..+++.+|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 6899999999999999999988654 35666665543 2333 45788999999999999899999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC------CeEEEeccCCCCCHHHHH
Q 027438 96 ISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG------LFFMETSALDSSNVTAAF 168 (223)
Q Consensus 96 ~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~ 168 (223)
++++.+++.+..|+..+... ...+.|+++|+||+|+.+ .+..++++.++...+ +.++++||++|.|++++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 99999999999998887654 233589999999999864 356666666654222 258899999999999999
Q ss_pred HHHHHHHHH
Q 027438 169 QTVVTEIYN 177 (223)
Q Consensus 169 ~~l~~~~~~ 177 (223)
++|++.+.+
T Consensus 154 ~~l~~~~~~ 162 (169)
T cd04158 154 DWLSRQLVA 162 (169)
T ss_pred HHHHHHHhh
Confidence 999877654
No 104
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.7e-28 Score=183.03 Aligned_cols=159 Identities=21% Similarity=0.377 Sum_probs=123.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEE
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 91 (223)
+..+||+++|+++||||||++++..+.+. .+.++.+.+.. .+.. ..+.+++||+||++.+..++..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 44589999999999999999999977664 45677665543 2323 4578999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-----CeEEEeccCCCCCHH
Q 027438 92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG-----LFFMETSALDSSNVT 165 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~ 165 (223)
+|||++++.+++.+..|+..+... ...+.|++||+||+|+... ...++......... +.++++||++|+|+.
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 999999999999988887776432 2236899999999998753 33333333221111 246689999999999
Q ss_pred HHHHHHHHHHHH
Q 027438 166 AAFQTVVTEIYN 177 (223)
Q Consensus 166 ~~~~~l~~~~~~ 177 (223)
++|++|++.+.+
T Consensus 168 e~~~~l~~~~~~ 179 (181)
T PLN00223 168 EGLDWLSNNIAN 179 (181)
T ss_pred HHHHHHHHHHhh
Confidence 999999887654
No 105
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=1.1e-28 Score=184.86 Aligned_cols=163 Identities=38% Similarity=0.550 Sum_probs=150.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEE
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 92 (223)
...+|+++|.+|+|||+|..++.++.+...++++++ +.+.+.+.+++..+.+.|+||+|++.+..+...++++++++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 357999999999999999999999999999999977 6667778889999999999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027438 93 VYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
||+++++.||+.+..++..+.+. .....|+++||||+|+...+.+..++++.++..++++|+++||+.+.+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 99999999999999999998543 34458999999999999889999999999999999999999999999999999999
Q ss_pred HHHHH
Q 027438 172 VTEIY 176 (223)
Q Consensus 172 ~~~~~ 176 (223)
.+.+-
T Consensus 161 ~r~~~ 165 (196)
T KOG0395|consen 161 VREIR 165 (196)
T ss_pred HHHHH
Confidence 87663
No 106
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=9.7e-28 Score=183.86 Aligned_cols=166 Identities=30% Similarity=0.528 Sum_probs=143.9
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCc
Q 027438 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 9 ~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
......+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 45566799999999999999999988888888888889888888877777888999999999999999889999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027438 89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168 (223)
Q Consensus 89 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 168 (223)
++|+|||++++.+|..+..|+..+..... +.|+++++||+|+.+ +....+ ...++...++.++++||++|.|++++|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~i~lv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVCE-NIPIVLVGNKVDVKD-RQVKAR-QITFHRKKNLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccCcc-ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999876543 689999999999864 233333 345677788899999999999999999
Q ss_pred HHHHHHHHH
Q 027438 169 QTVVTEIYN 177 (223)
Q Consensus 169 ~~l~~~~~~ 177 (223)
.+|++.++.
T Consensus 161 ~~ia~~l~~ 169 (215)
T PTZ00132 161 LWLARRLTN 169 (215)
T ss_pred HHHHHHHhh
Confidence 999988764
No 107
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=6.2e-28 Score=182.05 Aligned_cols=147 Identities=21% Similarity=0.406 Sum_probs=125.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEEC-----CEEEEEEEEeCCCcchhhcchHhhhcCCcE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN-----GKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
+||+++|+.|||||||++++.++.+...+.++++.++....+.++ +..+.+.||||+|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999888888888887777776663 467899999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhc-------------------CCCCCcEEEEEeCCCCCCCcccCHH----HHHHHH
Q 027438 90 ALLVYDISRRQTFDSIGRWLNELHTH-------------------SDMNVVTILVGNKSDLKDAREVTTA----EGKALA 146 (223)
Q Consensus 90 vi~v~d~~~~~s~~~~~~~~~~i~~~-------------------~~~~~piilv~nK~D~~~~~~~~~~----~~~~~~ 146 (223)
+|+|||++++.||+.+..|+..+... ...+.|++|||||+|+.+.+.+..+ ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 99999999999999999999998653 1246899999999999765544443 355678
Q ss_pred HHcCCeEEEeccCCC
Q 027438 147 EAQGLFFMETSALDS 161 (223)
Q Consensus 147 ~~~~~~~~~~Sa~~~ 161 (223)
++.+++.++.++.++
T Consensus 161 ~~~~~~~i~~~c~~~ 175 (202)
T cd04102 161 EQGNAEEINLNCTNG 175 (202)
T ss_pred HhcCCceEEEecCCc
Confidence 899999888777644
No 108
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.96 E-value=7.4e-29 Score=184.15 Aligned_cols=156 Identities=22% Similarity=0.397 Sum_probs=121.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEE
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 92 (223)
..++|+++|++|||||||++++..+.+. .+.++.+.+... +.. ..+.+.+||+||++.+..++..+++++|++|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 4599999999999999999999877663 456676655532 233 34789999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEeccCCCCCHHH
Q 027438 93 VYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAE-----AQGLFFMETSALDSSNVTA 166 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~ 166 (223)
|+|++++.+++....|+..+... ...+.|+++|+||+|+.+. ...++...... ...+.++++||++|.|+++
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence 99999999999998888776543 2246899999999998643 22333322221 1233477899999999999
Q ss_pred HHHHHHHHH
Q 027438 167 AFQTVVTEI 175 (223)
Q Consensus 167 ~~~~l~~~~ 175 (223)
+|++|...+
T Consensus 165 ~~~~l~~~~ 173 (175)
T smart00177 165 GLTWLSNNL 173 (175)
T ss_pred HHHHHHHHh
Confidence 999997764
No 109
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=5.5e-29 Score=182.04 Aligned_cols=152 Identities=21% Similarity=0.433 Sum_probs=118.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+++|.+|||||||++++..+.+. .+.++.+.... .+.. ..+.+.+||+||++.+..++..+++++|++|+|+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999877775 45667665543 2223 3578899999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHH-HHHHH----HHcCCeEEEeccCCCCCHHHHH
Q 027438 95 DISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAE-GKALA----EAQGLFFMETSALDSSNVTAAF 168 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D~~~~~~~~~~~-~~~~~----~~~~~~~~~~Sa~~~~~i~~~~ 168 (223)
|++++.+++.+..|+..+... ...+.|+++++||+|+... ...++ ...+. ....+.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999999998887776433 2236899999999998642 22222 22221 1223457899999999999999
Q ss_pred HHHHH
Q 027438 169 QTVVT 173 (223)
Q Consensus 169 ~~l~~ 173 (223)
++|..
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99863
No 110
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=5e-28 Score=180.69 Aligned_cols=160 Identities=21% Similarity=0.382 Sum_probs=122.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEE
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 91 (223)
...+||+++|++|||||||++++..+.+.. +.++.+.++. .+.. ..+.+++|||||++.+..++..+++.+|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 345899999999999999999998776643 5566665543 2333 4578999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEeccCCCCCHH
Q 027438 92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAE-----AQGLFFMETSALDSSNVT 165 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 165 (223)
+|+|++++.+++.+..|+..+... ...+.|+++|+||.|+.+. ...++...... ...+.++++||++|.|++
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 999999999999988877776432 2236899999999998642 22333222211 112356799999999999
Q ss_pred HHHHHHHHHHHHH
Q 027438 166 AAFQTVVTEIYNI 178 (223)
Q Consensus 166 ~~~~~l~~~~~~~ 178 (223)
++|++|.+.+.+.
T Consensus 168 e~~~~l~~~i~~~ 180 (182)
T PTZ00133 168 EGLDWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998877554
No 111
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=5.9e-28 Score=178.99 Aligned_cols=158 Identities=21% Similarity=0.363 Sum_probs=124.9
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCc
Q 027438 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 9 ~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
......++|+++|++|||||||+++|.+..+ ..+.++.+... ..+.++ .+.+.+||+||++.+...+..+++.+|
T Consensus 9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d 83 (173)
T cd04154 9 KLKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTD 83 (173)
T ss_pred hcCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence 3445679999999999999999999998754 34556655433 334444 477899999999998888999999999
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEeccCCCC
Q 027438 89 GALLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAE-----AQGLFFMETSALDSS 162 (223)
Q Consensus 89 ~vi~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 162 (223)
++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.. ..+++..+.. ..+++++++||++|.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 161 (173)
T cd04154 84 ALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGE 161 (173)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCc
Confidence 999999999999999998888777543 33479999999999987532 4455555442 245679999999999
Q ss_pred CHHHHHHHHHH
Q 027438 163 NVTAAFQTVVT 173 (223)
Q Consensus 163 ~i~~~~~~l~~ 173 (223)
|++++|++++.
T Consensus 162 gi~~l~~~l~~ 172 (173)
T cd04154 162 GLLQGIDWLVD 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 112
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.96 E-value=6.5e-29 Score=182.46 Aligned_cols=164 Identities=31% Similarity=0.555 Sum_probs=147.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEEC-CEEEEEEEEeCCCcchhhcchHhhhcCCcEE
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 90 (223)
...+|++|+|+.++|||+|+-.+..+.++..+.|+.- +-+...+.++ +..+.+.+|||+|+++|++++...+..+|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3568999999999999999999999999999999965 6667778885 9999999999999999999998899999999
Q ss_pred EEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHcCCe-EEEe
Q 027438 91 LLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDA------------REVTTAEGKALAEAQGLF-FMET 156 (223)
Q Consensus 91 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 156 (223)
++||++.++.||+++ .+|+.++..+++ +.|+|+||+|.|+.+. ..++.++++.+++..|+. |++|
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHCP-NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 999999999999998 789999999885 8999999999999742 357889999999999965 9999
Q ss_pred ccCCCCCHHHHHHHHHHHHHH
Q 027438 157 SALDSSNVTAAFQTVVTEIYN 177 (223)
Q Consensus 157 Sa~~~~~i~~~~~~l~~~~~~ 177 (223)
||++..|++++|+..+...+.
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhc
Confidence 999999999999999877643
No 113
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=1.2e-27 Score=176.24 Aligned_cols=159 Identities=32% Similarity=0.384 Sum_probs=123.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+||+|+|++|||||||+++|.++.+...+..+ ... ......+.+..+.+.+|||||...+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPE-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccc-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 48999999999999999999998876543332 222 2333445667789999999999887777777789999999999
Q ss_pred ECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHHcC--CeEEEeccCCCCCHHHHHH
Q 027438 95 DISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDAREV--TTAEGKALAEAQG--LFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 95 d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~ 169 (223)
|++++.+++.+. .|+..+..... +.|+++|+||+|+.+.... ..++...++.... .+++++||++|.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999985 68888876544 7999999999999764432 1233333433332 3799999999999999999
Q ss_pred HHHHHHH
Q 027438 170 TVVTEIY 176 (223)
Q Consensus 170 ~l~~~~~ 176 (223)
.+...+.
T Consensus 158 ~~~~~~~ 164 (166)
T cd01893 158 YAQKAVL 164 (166)
T ss_pred HHHHHhc
Confidence 9887654
No 114
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=2.4e-27 Score=173.64 Aligned_cols=152 Identities=20% Similarity=0.340 Sum_probs=117.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEF-YPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
+|+++|++|||||||+++|.+... ...+.++.+..... +. ...+.+.+|||||+..+...+..+++.+|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 44556666654322 22 24578899999999999999999999999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhc---CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEeccCCCCCHHH
Q 027438 95 DISRRQTFDSIGRWLNELHTH---SDMNVVTILVGNKSDLKDAREVTTAEGKALAE-----AQGLFFMETSALDSSNVTA 166 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~---~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~ 166 (223)
|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.. ..++...... ...++++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 999999999988888877543 23479999999999987532 2222222211 1233589999999999999
Q ss_pred HHHHHHH
Q 027438 167 AFQTVVT 173 (223)
Q Consensus 167 ~~~~l~~ 173 (223)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999864
No 115
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=5.3e-27 Score=174.02 Aligned_cols=154 Identities=25% Similarity=0.414 Sum_probs=120.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEE
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 92 (223)
..++|+++|++|+|||||++++.++.+.. +.++.+.++. .+.++ .+.+.+||+||++.+...+..+++.+|++|+
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 35899999999999999999999877654 4566565543 23333 4788999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHH-HHHH----HHcCCeEEEeccCCCCCHHH
Q 027438 93 VYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEG-KALA----EAQGLFFMETSALDSSNVTA 166 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D~~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~i~~ 166 (223)
|+|++++.++.....|+..+.... ..+.|+++++||+|+... ...++. ..+. ...+++++++||++|.|+++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 999999999988888777764432 246899999999998652 233332 2222 23456799999999999999
Q ss_pred HHHHHHH
Q 027438 167 AFQTVVT 173 (223)
Q Consensus 167 ~~~~l~~ 173 (223)
+|++|.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999864
No 116
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=2.8e-26 Score=169.97 Aligned_cols=140 Identities=38% Similarity=0.686 Sum_probs=126.2
Q ss_pred CCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcC
Q 027438 37 DEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHS 116 (223)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~ 116 (223)
+.+.+.+.+|.|.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 35667788999999988888899999999999999999999999999999999999999999999999999999987665
Q ss_pred CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027438 117 DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 117 ~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 176 (223)
....|+++|+||+|+.+.+.+..+++..++...++.|+++||++|.|++++|++|+..+.
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~ 142 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLP 142 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999876778888889999989999999999999999999999987763
No 117
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=3.5e-27 Score=173.84 Aligned_cols=153 Identities=21% Similarity=0.331 Sum_probs=119.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEE
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD 95 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d 95 (223)
+|+++|++|||||||++++.+. +...+.++.+... ..+... .+.+.+||+||+..+..++..+++++|++|+|+|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 5566677777543 333343 4778999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccC-HHH---HHHHHHHcC--CeEEEeccCCC------C
Q 027438 96 ISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVT-TAE---GKALAEAQG--LFFMETSALDS------S 162 (223)
Q Consensus 96 ~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D~~~~~~~~-~~~---~~~~~~~~~--~~~~~~Sa~~~------~ 162 (223)
++++.+++.+..|+..+.... ..+.|+++|+||.|+...+... ..+ ...++...+ +.+++|||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 999999999999999886542 2478999999999987643211 111 112232233 45788999998 8
Q ss_pred CHHHHHHHHHH
Q 027438 163 NVTAAFQTVVT 173 (223)
Q Consensus 163 ~i~~~~~~l~~ 173 (223)
|+.+.|+||..
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999964
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=6.1e-27 Score=171.20 Aligned_cols=152 Identities=26% Similarity=0.441 Sum_probs=117.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEE
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD 95 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d 95 (223)
+|+++|++|||||||++++.++.+.. ..++.+.+.. .+... ..+.+.+||+||+..+...+..++..+|++|+|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~--~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE--MLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE--EEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999987753 3455554432 33333 45789999999999998889999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHH------HHHcCCeEEEeccCCCCCHHHHH
Q 027438 96 ISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKAL------AEAQGLFFMETSALDSSNVTAAF 168 (223)
Q Consensus 96 ~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~i~~~~ 168 (223)
.+++.++..+..|+..+.... ..+.|+++|+||+|+... ...++.... +...++++++|||++|.|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 999999999988888875432 247999999999998642 222222221 22234579999999999999999
Q ss_pred HHHHH
Q 027438 169 QTVVT 173 (223)
Q Consensus 169 ~~l~~ 173 (223)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99863
No 119
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=4.3e-26 Score=180.18 Aligned_cols=143 Identities=27% Similarity=0.499 Sum_probs=123.1
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEEC-------------CEEEEEEEEeCCCcch
Q 027438 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN-------------GKEVKAQIWDTAGQER 75 (223)
Q Consensus 9 ~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~D~~G~~~ 75 (223)
.+....+||+|+|+.|||||||+++|.++.+...+.+++|.++....+.++ +..+.+.||||+|++.
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 345667999999999999999999999998888888898888877766664 2568899999999999
Q ss_pred hhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCC------------CCCcEEEEEeCCCCCCCc---c---c
Q 027438 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSD------------MNVVTILVGNKSDLKDAR---E---V 137 (223)
Q Consensus 76 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piilv~nK~D~~~~~---~---~ 137 (223)
+..++..+++++|++|+|||++++.+|+.+..|+..+..... ..+|++||+||+|+...+ . +
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~ 175 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGN 175 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccc
Confidence 999999999999999999999999999999999999976531 258999999999996542 2 3
Q ss_pred CHHHHHHHHHHcCC
Q 027438 138 TTAEGKALAEAQGL 151 (223)
Q Consensus 138 ~~~~~~~~~~~~~~ 151 (223)
..++++++++..++
T Consensus 176 ~~e~a~~~A~~~g~ 189 (334)
T PLN00023 176 LVDAARQWVEKQGL 189 (334)
T ss_pred cHHHHHHHHHHcCC
Confidence 68899999999885
No 120
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=2e-26 Score=173.24 Aligned_cols=156 Identities=21% Similarity=0.298 Sum_probs=123.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEE
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 91 (223)
...++|+++|++|||||||++++.+..+. .+.++.+... ..+.+++ +.+.+||+||+..+...+..+++.+|+++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999987763 4445544432 3344444 67889999999998888899999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH----------------cCCeEE
Q 027438 92 LVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEA----------------QGLFFM 154 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~ 154 (223)
+|+|++++.+++....|+..+.... ..+.|+++++||+|+.. .+..++.+..... ..+.++
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 9999999999998888888875432 34699999999999864 4455666655532 224589
Q ss_pred EeccCCCCCHHHHHHHHHHH
Q 027438 155 ETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 155 ~~Sa~~~~~i~~~~~~l~~~ 174 (223)
+|||++|.|++++|++|.+.
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EeEecCCCChHHHHHHHHhh
Confidence 99999999999999999764
No 121
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=6.9e-27 Score=170.73 Aligned_cols=151 Identities=23% Similarity=0.391 Sum_probs=114.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEE
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD 95 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d 95 (223)
||+|+|++++|||||++++..+.+. ...++.+.+.. .+.. ..+.+++|||||+..+...+..++..+|++|+|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 6899999999999999999877664 34455555443 2223 44788999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHH-hhcCCCCCcEEEEEeCCCCCCCcccCHHHHH-HHH----HHcCCeEEEeccCCCCCHHHHHH
Q 027438 96 ISRRQTFDSIGRWLNEL-HTHSDMNVVTILVGNKSDLKDAREVTTAEGK-ALA----EAQGLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 96 ~~~~~s~~~~~~~~~~i-~~~~~~~~piilv~nK~D~~~~~~~~~~~~~-~~~----~~~~~~~~~~Sa~~~~~i~~~~~ 169 (223)
++++.++.....|+..+ ......+.|+++|+||+|+.+.. ...+.. .+. ...+.+++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 99998888776666544 32333469999999999987532 222222 221 11234699999999999999999
Q ss_pred HHHH
Q 027438 170 TVVT 173 (223)
Q Consensus 170 ~l~~ 173 (223)
+|++
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9864
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=1.4e-26 Score=169.05 Aligned_cols=151 Identities=22% Similarity=0.387 Sum_probs=119.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEE
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD 95 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d 95 (223)
||+++|++|||||||++++.+... ....++.+.+... +.+. .+.+.+||+||+..+...+..++..+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVET--VEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEE--EEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998873 4445555544433 3333 4678899999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEeccCCCCCHHHHHH
Q 027438 96 ISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAE-----AQGLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 96 ~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~ 169 (223)
++++.++.....|+..+... ...+.|+++|+||+|+.... ..++...... ...++++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 99999999998888776553 23479999999999987543 2333333322 2345799999999999999999
Q ss_pred HHHH
Q 027438 170 TVVT 173 (223)
Q Consensus 170 ~l~~ 173 (223)
+|+.
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9864
No 123
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=2.6e-26 Score=169.03 Aligned_cols=152 Identities=22% Similarity=0.403 Sum_probs=117.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC------CCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcE
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEF------YPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
+|+|+|++|+|||||+++|.+... ...+.++.+.+.. .+.++ ...+.+|||||+..+...+..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999986432 1223344444432 33344 4688899999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-------cCCeEEEeccCCC
Q 027438 90 ALLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEA-------QGLFFMETSALDS 161 (223)
Q Consensus 90 vi~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~ 161 (223)
+++|+|.+++.++.....|+..+... ...+.|+++|+||+|+... ...++...+... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 99999999999999988888876554 2347999999999998653 334444444332 2457999999999
Q ss_pred CCHHHHHHHHHH
Q 027438 162 SNVTAAFQTVVT 173 (223)
Q Consensus 162 ~~i~~~~~~l~~ 173 (223)
.|+++++++|..
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999864
No 124
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=1.8e-25 Score=167.30 Aligned_cols=156 Identities=19% Similarity=0.253 Sum_probs=120.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEE
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 91 (223)
+..++|+++|.+|||||||++++.+..+. .+.++.+.+. ..+.+. .+.+.+||+||+..+...+..+++.+|++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 55699999999999999999999987653 3344434332 233333 377889999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH------------cCCeEEEecc
Q 027438 92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEA------------QGLFFMETSA 158 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 158 (223)
+|+|++++.++.....|+..+... ...+.|+++|+||+|+.. .++.++....... ....+++|||
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 999999999999888888776543 224689999999999864 3445554443211 1234899999
Q ss_pred CCCCCHHHHHHHHHHH
Q 027438 159 LDSSNVTAAFQTVVTE 174 (223)
Q Consensus 159 ~~~~~i~~~~~~l~~~ 174 (223)
++|.|+++++++|..+
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999764
No 125
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.94 E-value=2.4e-25 Score=165.10 Aligned_cols=158 Identities=26% Similarity=0.428 Sum_probs=125.7
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEE
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 90 (223)
.+..++|+++|..|||||||++++..+... ...||.|.+... +.+.+ +.+.+||++|+..+...|..++..+|++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~--i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEE--IKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEE--EEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccce--eeeCc--EEEEEEeccccccccccceeecccccee
Confidence 367899999999999999999999976543 355666655443 44454 6788999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH------HcCCeEEEeccCCCCC
Q 027438 91 LLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAE------AQGLFFMETSALDSSN 163 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~ 163 (223)
|||+|.++++.+......+..+... ...+.|+++++||.|+.+. ...++...... ...+.++.|||.+|.|
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 9999999999999888877776543 3347999999999998753 44555554432 2234589999999999
Q ss_pred HHHHHHHHHHHH
Q 027438 164 VTAAFQTVVTEI 175 (223)
Q Consensus 164 i~~~~~~l~~~~ 175 (223)
+.+.++||.+.+
T Consensus 164 v~e~l~WL~~~~ 175 (175)
T PF00025_consen 164 VDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999998753
No 126
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=3.8e-25 Score=160.85 Aligned_cols=151 Identities=23% Similarity=0.395 Sum_probs=119.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEEC
Q 027438 17 VVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDI 96 (223)
Q Consensus 17 v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~ 96 (223)
|+|+|++|||||||+++|.+..+...+.++.+..... ....+ +.+.+||+||+..+...+..+++.+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7999999999999999999998888777777765543 23333 7889999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcCCeEEEeccCCCCCHHHHHHH
Q 027438 97 SRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALA-----EAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 97 ~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
+++.++.....|+..+... ...++|+++|+||+|+..... ..+..... ....++++++|+++|.|+++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence 9999998888887776543 234689999999999875322 22221111 122457899999999999999999
Q ss_pred HHH
Q 027438 171 VVT 173 (223)
Q Consensus 171 l~~ 173 (223)
|.+
T Consensus 156 l~~ 158 (159)
T cd04159 156 LIK 158 (159)
T ss_pred Hhh
Confidence 864
No 127
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=3.5e-25 Score=163.16 Aligned_cols=156 Identities=20% Similarity=0.182 Sum_probs=109.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhh---------cchHhhhc
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR---------AVTSAYYR 85 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~~~~~~~ 85 (223)
.+|+++|++|+|||||+++|.+..+.....+..+....... +....+.+.+|||||..... ........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGH--FDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEE--EccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 47999999999999999999997764332222122222222 22235788999999974211 01111112
Q ss_pred CCcEEEEEEECCCHhhH--HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCC
Q 027438 86 GAVGALLVYDISRRQTF--DSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSN 163 (223)
Q Consensus 86 ~~d~vi~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (223)
.+|++|+|+|++++.++ +....|+..+.... .+.|+++|+||+|+.....+. +...+....+.+++++||++|.|
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCC
Confidence 36899999999987653 56667888876544 369999999999997644332 24455555677899999999999
Q ss_pred HHHHHHHHHHHH
Q 027438 164 VTAAFQTVVTEI 175 (223)
Q Consensus 164 i~~~~~~l~~~~ 175 (223)
++++|+++.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998775
No 128
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=5.5e-25 Score=163.80 Aligned_cols=154 Identities=23% Similarity=0.275 Sum_probs=113.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC--C-----CCCCCC------cceeeeEEEEEE--E---CCEEEEEEEEeCCCcchhh
Q 027438 16 KVVLIGDSAVGKSNLLARFARDE--F-----YPNSKS------TIGVEFQTQKMD--I---NGKEVKAQIWDTAGQERFR 77 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~--~-----~~~~~~------~~~~~~~~~~~~--~---~~~~~~~~l~D~~G~~~~~ 77 (223)
+|+++|++++|||||+++|++.. + ...+.+ +.|.+....... + ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999998732 1 111111 113333333222 2 5677889999999999999
Q ss_pred cchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe---EE
Q 027438 78 AVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF---FM 154 (223)
Q Consensus 78 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~ 154 (223)
..+..+++.+|++|+|+|++++.++.....|..... .++|+++|+||+|+.+.. ......++++..+++ ++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~----~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE----NNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH----cCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 999999999999999999999777777666654332 368999999999986422 122334556666654 89
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 027438 155 ETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 155 ~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
++||++|.|++++|++|...+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999998653
No 129
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=3.5e-25 Score=163.43 Aligned_cols=157 Identities=20% Similarity=0.154 Sum_probs=111.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcch----hhcchHhh---hcCCc
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER----FRAVTSAY---YRGAV 88 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~~~~~---~~~~d 88 (223)
+|+|+|.+|||||||+++|.+........+..+.......+.+.+ ...+.+|||||... ...+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 689999999999999999997654222222222222222233333 24788999999632 22233333 34699
Q ss_pred EEEEEEECCCH-hhHHHHHHHHHHHhhcCC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cCCeEEEeccCCCCCH
Q 027438 89 GALLVYDISRR-QTFDSIGRWLNELHTHSD--MNVVTILVGNKSDLKDAREVTTAEGKALAEA-QGLFFMETSALDSSNV 164 (223)
Q Consensus 89 ~vi~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i 164 (223)
++++|+|++++ .+++.+..|++.+..... ...|+++|+||+|+...... .+....+... .+.+++++||+++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999999 789999999988866532 36899999999998764433 3344445555 3678999999999999
Q ss_pred HHHHHHHHHH
Q 027438 165 TAAFQTVVTE 174 (223)
Q Consensus 165 ~~~~~~l~~~ 174 (223)
+++|++|.++
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999999864
No 130
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.93 E-value=2.6e-24 Score=150.70 Aligned_cols=163 Identities=20% Similarity=0.361 Sum_probs=130.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEE
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 90 (223)
++.+++|+++|..||||||++++|.+.. .....|+.|........ ..+++++||++|+...+..|.+|+..+|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 4558999999999999999999999865 34556666665555443 568899999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhh-cCCCCCcEEEEEeCCCCCCC---cccCH-HHHHHHHHHcCCeEEEeccCCCCCHH
Q 027438 91 LLVYDISRRQTFDSIGRWLNELHT-HSDMNVVTILVGNKSDLKDA---REVTT-AEGKALAEAQGLFFMETSALDSSNVT 165 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~D~~~~---~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~i~ 165 (223)
|+|+|.+++..++.....+..+.. ..-.+.|+++++||.|+... .++.. -....+++...++++.||+.+|+++.
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~ 167 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLL 167 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHH
Confidence 999999999999988777766533 23346899999999998743 11211 11234457778899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027438 166 AAFQTVVTEIYNI 178 (223)
Q Consensus 166 ~~~~~l~~~~~~~ 178 (223)
+.++||+..+.++
T Consensus 168 ~gidWL~~~l~~r 180 (185)
T KOG0073|consen 168 EGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998874
No 131
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=2.5e-24 Score=156.16 Aligned_cols=158 Identities=35% Similarity=0.511 Sum_probs=128.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEE
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 93 (223)
.+||+++|++|+|||||++++.+......+.++.+.+.....+..++..+.+.+||+||+..+...+...++.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999887666667777777776677777778899999999999988888889999999999
Q ss_pred EECCCH-hhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027438 94 YDISRR-QTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 94 ~d~~~~-~s~~~~~-~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
+|+... .++.... .|+..+......+.|+++++||+|+.... ...+....+......+++++||+++.|++++|++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 999887 6666664 77777665544478999999999997643 34444445555556679999999999999999886
Q ss_pred H
Q 027438 172 V 172 (223)
Q Consensus 172 ~ 172 (223)
.
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 3
No 132
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=6.6e-25 Score=166.84 Aligned_cols=157 Identities=22% Similarity=0.195 Sum_probs=114.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcch---------hhcchH
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER---------FRAVTS 81 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~ 81 (223)
.+..++|+|+|++|||||||++++++........+..+.+.....+.+.+. ..+.+|||||... +...+
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~- 115 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL- 115 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence 355689999999999999999999987654332223233333334444432 3688999999632 11111
Q ss_pred hhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCC
Q 027438 82 AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDS 161 (223)
Q Consensus 82 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (223)
..+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+.+..... ......+.+++++||+++
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~ 190 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTG 190 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCC
Confidence 235789999999999999888888788777766554568999999999987543221 334455678999999999
Q ss_pred CCHHHHHHHHHHH
Q 027438 162 SNVTAAFQTVVTE 174 (223)
Q Consensus 162 ~~i~~~~~~l~~~ 174 (223)
.|+++++++|..+
T Consensus 191 ~gi~~l~~~L~~~ 203 (204)
T cd01878 191 EGLDELLEAIEEL 203 (204)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998765
No 133
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.93 E-value=1.4e-24 Score=183.72 Aligned_cols=204 Identities=20% Similarity=0.161 Sum_probs=143.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcc----------hhhcch
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE----------RFRAVT 80 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~ 80 (223)
...++|+|+|.++||||||+++|++.... ....++++.+.....+.+++.. +.+|||||.. .+..+.
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHH
Confidence 34699999999999999999999987643 2333444444445555666644 5699999952 222222
Q ss_pred -HhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHH-HHHHHcCCeEEEe
Q 027438 81 -SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV--TTAEGK-ALAEAQGLFFMET 156 (223)
Q Consensus 81 -~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~--~~~~~~-~~~~~~~~~~~~~ 156 (223)
..+++.+|++|+|+|++++.++..+. ++..+.. .+.|+|+|+||+|+.+.... ...+.. .+.....++++++
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 362 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI 362 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence 23578999999999999988877663 4444432 36899999999999753211 111111 2222234789999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHhhhh-------hhhhhhhhccCCCCCCceeeecCCCcccccCCCCCCCCC
Q 027438 157 SALDSSNVTAAFQTVVTEIYNILSRKV-------MISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS 222 (223)
Q Consensus 157 Sa~~~~~i~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 222 (223)
||++|.|++++|+.+.+.+. ....+. .........+.|..++++.+++|..|-...||.+..+|+
T Consensus 363 SAk~g~gv~~lf~~i~~~~~-~~~~~i~t~~ln~~~~~~~~~~~~p~~~g~~~k~~y~~q~~~~pp~f~~~~~ 434 (472)
T PRK03003 363 SAKTGRAVDKLVPALETALE-SWDTRIPTGRLNAWLGELVAATPPPVRGGKQPRILFATQASTRPPTFVLFTT 434 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHH-HhcccCCHHHHHHHHHHHHHcCCCCCCCCeeeeEEEEECCCCCCCEEEEEeC
Confidence 99999999999999986554 333332 234445566677789999999999999999999877664
No 134
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.93 E-value=4.3e-24 Score=158.13 Aligned_cols=154 Identities=23% Similarity=0.370 Sum_probs=117.2
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcE
Q 027438 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 10 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
+....++|+|+|++|||||||++++.+..+. ...++.+.+.. .+..++ ..+.+||++|...+...+..+++.+|+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~--~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ 84 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK--TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDC 84 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence 3445799999999999999999999987553 34455554333 333444 678899999998888888888999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC--------eEEEeccCC
Q 027438 90 ALLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL--------FFMETSALD 160 (223)
Q Consensus 90 vi~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~ 160 (223)
+++|+|+++..++.....|+..+... ...++|+++++||+|+.+... .++ +....++ +++++||++
T Consensus 85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~---i~~~l~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04155 85 LIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEE---IAEALNLHDLRDRTWHIQACSAKT 159 (173)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHH---HHHHcCCcccCCCeEEEEEeECCC
Confidence 99999999999998887777665433 334699999999999865322 222 2222332 478999999
Q ss_pred CCCHHHHHHHHHH
Q 027438 161 SSNVTAAFQTVVT 173 (223)
Q Consensus 161 ~~~i~~~~~~l~~ 173 (223)
|.|++++|++|++
T Consensus 160 ~~gi~~~~~~l~~ 172 (173)
T cd04155 160 GEGLQEGMNWVCK 172 (173)
T ss_pred CCCHHHHHHHHhc
Confidence 9999999999874
No 135
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=2.2e-24 Score=174.01 Aligned_cols=163 Identities=19% Similarity=0.100 Sum_probs=120.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcch-------hhcchHhhhcC
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-------FRAVTSAYYRG 86 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~ 86 (223)
...|+|+|.|+||||||+++|++........+.++.......+.+. ....+.+||+||... ....+...++.
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 4679999999999999999999865433333443444444444442 234678999999632 11122234567
Q ss_pred CcEEEEEEECCCHhhHHHHHHHHHHHhhcCC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 027438 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSD--MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNV 164 (223)
Q Consensus 87 ~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 164 (223)
++++|+|+|+++..+++.+..|..++..+.. .++|+++|+||+|+........++...++...+.+++++||++++|+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 9999999999988889999999999876643 36899999999998765444444455555666788999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027438 165 TAAFQTVVTEIYN 177 (223)
Q Consensus 165 ~~~~~~l~~~~~~ 177 (223)
++++++|.+.+.+
T Consensus 317 ~eL~~~L~~~l~~ 329 (335)
T PRK12299 317 DELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 136
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.93 E-value=1.1e-24 Score=151.24 Aligned_cols=173 Identities=27% Similarity=0.486 Sum_probs=149.9
Q ss_pred cccccccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhh
Q 027438 4 YSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAY 83 (223)
Q Consensus 4 ~~~~~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~ 83 (223)
.+.+...+.-.++|.++|++..|||||+-.++++.+++.+..+.|+++..+.+.+.+..+.+.+||.+|++++..+....
T Consensus 10 ~~~~a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPia 89 (205)
T KOG1673|consen 10 NSIPAVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIA 89 (205)
T ss_pred CCCcccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCcee
Confidence 34445567778999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred hcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc-----ccCHHHHHHHHHHcCCeEEEecc
Q 027438 84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR-----EVTTAEGKALAEAQGLFFMETSA 158 (223)
Q Consensus 84 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa 158 (223)
-..+-+++++||++.+.+++++..|+++.+...+..+| |+||||.|+.-.- +.-..+++.+++..++++|.||+
T Consensus 90 c~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~St 168 (205)
T KOG1673|consen 90 CKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCST 168 (205)
T ss_pred ecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeec
Confidence 99999999999999999999999999998776654454 7899999964211 11234577788999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 027438 159 LDSSNVTAAFQTVVTEIYN 177 (223)
Q Consensus 159 ~~~~~i~~~~~~l~~~~~~ 177 (223)
..+.|+..+|..+..++..
T Consensus 169 s~sINv~KIFK~vlAklFn 187 (205)
T KOG1673|consen 169 SHSINVQKIFKIVLAKLFN 187 (205)
T ss_pred cccccHHHHHHHHHHHHhC
Confidence 9999999999998877643
No 137
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.92 E-value=4.6e-24 Score=179.37 Aligned_cols=205 Identities=22% Similarity=0.186 Sum_probs=140.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcch---------
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVT--------- 80 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--------- 80 (223)
....++|+++|.+++|||||+++|++..... ...+.++.+.....+..++. .+.+|||||........
T Consensus 169 ~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~ 246 (429)
T TIGR03594 169 EDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVL 246 (429)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHH
Confidence 3456899999999999999999999865432 22222233333344444443 67899999965433221
Q ss_pred --HhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHH-HHHHHH----cCCeE
Q 027438 81 --SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEG-KALAEA----QGLFF 153 (223)
Q Consensus 81 --~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~-~~~~~~----~~~~~ 153 (223)
...++.+|++|+|+|++++.+..... ++..+.. .+.|+++|+||+|+.+... ..++. ..+... .++++
T Consensus 247 ~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~v 321 (429)
T TIGR03594 247 RTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKDEK-TREEFKKELRRKLPFLDFAPI 321 (429)
T ss_pred HHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCCHH-HHHHHHHHHHHhcccCCCCce
Confidence 23678999999999999887765543 3333332 2689999999999973111 11121 122222 24789
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHHHHhh------hhhhhhhhhhccCCCCCCceeeecCCCcccccCCCCCCCCC
Q 027438 154 METSALDSSNVTAAFQTVVTEIYNILSR------KVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS 222 (223)
Q Consensus 154 ~~~Sa~~~~~i~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 222 (223)
+++||++|.|++++|+++...+.....+ +..........+.|..++++.+++|..|....||.+..+||
T Consensus 322 i~~SA~~g~~v~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~p~~~~~~~k~~y~~q~~~~pp~~~~~~n 396 (429)
T TIGR03594 322 VFISALTGQGVDKLLDAIDEVYENANRRISTSKLNRVLEEAVAAHPPPLVNGRRLKIKYATQVGTNPPTFVLFGN 396 (429)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCCCCCCCceeeEEEEECCCCCCCEEEEEEc
Confidence 9999999999999999998755433221 11223444556677789999999999999999999988887
No 138
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=4.5e-24 Score=156.38 Aligned_cols=152 Identities=19% Similarity=0.167 Sum_probs=104.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDE---FYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 91 (223)
+.|+|+|++|||||||+++|++.. +.....++.+.+.....+.+.+ ...+.+|||||++.+......++..+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 368999999999999999999642 2222223333343333444442 357889999999988777777788999999
Q ss_pred EEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHH---cCCeEEEeccCCCCC
Q 027438 92 LVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE--VTTAEGKALAEA---QGLFFMETSALDSSN 163 (223)
Q Consensus 92 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~ 163 (223)
+|+|+++ +.+.+.+. .+... . ..|+++|+||+|+..... ...++..+.... .+.+++++||+++.|
T Consensus 80 ~V~d~~~~~~~~~~~~~~----~~~~~-~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREHLE----ILELL-G-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHHHH----HHHHh-C-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999987 33433322 22211 1 248999999999875321 112333344333 467899999999999
Q ss_pred HHHHHHHHHH
Q 027438 164 VTAAFQTVVT 173 (223)
Q Consensus 164 i~~~~~~l~~ 173 (223)
++++++.+..
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998753
No 139
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=3.2e-23 Score=159.20 Aligned_cols=170 Identities=36% Similarity=0.553 Sum_probs=139.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEE
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 93 (223)
.++|+++|+.|||||||+++|.++.+...+.++.+..+........+..+.+.+|||+|++++..++..++..+++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 38999999999999999999999999888888877777777766666688899999999999999999999999999999
Q ss_pred EECCC-HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHc---CCeEEEec
Q 027438 94 YDISR-RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR------------EVTTAEGKALAEAQ---GLFFMETS 157 (223)
Q Consensus 94 ~d~~~-~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~S 157 (223)
+|.++ ..+++....|...+........|+++++||+|+.... .............. ...++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 99999 4456666889999888776679999999999997652 22222222222222 23389999
Q ss_pred cC--CCCCHHHHHHHHHHHHHHHHhhhh
Q 027438 158 AL--DSSNVTAAFQTVVTEIYNILSRKV 183 (223)
Q Consensus 158 a~--~~~~i~~~~~~l~~~~~~~~~~~~ 183 (223)
++ ++.++.++|..+...+.+......
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 192 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLEEIEKLV 192 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHHhhhhhh
Confidence 99 999999999999988876655444
No 140
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=2e-24 Score=154.93 Aligned_cols=134 Identities=23% Similarity=0.256 Sum_probs=99.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcc-----hhhcchHhhhcCCcEE
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE-----RFRAVTSAYYRGAVGA 90 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-----~~~~~~~~~~~~~d~v 90 (223)
||+++|++|||||||+++|.+..+. +.++.+.+ +.. .+|||||.. .+..+. ..++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~~~-----~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------YND-----GAIDTPGEYVENRRLYSALI-VTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------EcC-----eeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence 7999999999999999999987542 22332221 111 589999972 233333 347899999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEeccCCCCCHHHHHH
Q 027438 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~ 169 (223)
|+|+|++++.++.. ..|...+ ..|+++|+||+|+.+ .....+++.++++..+. +++++||++|.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999988754 3454332 249999999999865 34456677777777776 799999999999999999
Q ss_pred HHH
Q 027438 170 TVV 172 (223)
Q Consensus 170 ~l~ 172 (223)
+|.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 141
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=5.9e-23 Score=147.63 Aligned_cols=153 Identities=44% Similarity=0.767 Sum_probs=122.1
Q ss_pred EEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECC
Q 027438 19 LIGDSAVGKSNLLARFARDEF-YPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDIS 97 (223)
Q Consensus 19 v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~ 97 (223)
|+|++|+|||||++++.+... .....++. .+.........+....+.+||+||...+...+...++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998876 44444553 6666777766777889999999999888888888899999999999999
Q ss_pred CHhhHHHHHHHH-HHHhhcCCCCCcEEEEEeCCCCCCCcccCHHH-HHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027438 98 RRQTFDSIGRWL-NELHTHSDMNVVTILVGNKSDLKDAREVTTAE-GKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 98 ~~~s~~~~~~~~-~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
++.+++....|. .........+.|+++|+||+|+.......... .........++++++|+.++.|+.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999999988873 33333445579999999999987644333322 3445566678899999999999999999875
No 142
>PRK04213 GTP-binding protein; Provisional
Probab=99.91 E-value=3.7e-24 Score=162.32 Aligned_cols=155 Identities=21% Similarity=0.263 Sum_probs=103.4
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC-----------cchhhc
Q 027438 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG-----------QERFRA 78 (223)
Q Consensus 10 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G-----------~~~~~~ 78 (223)
.+...++|+++|++|||||||+++|.+..+.....+ +++.....+.+. .+.+||||| .+.+..
T Consensus 5 ~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~ 78 (201)
T PRK04213 5 RPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKD 78 (201)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHH
Confidence 334568999999999999999999998776544344 344444333333 578999999 345555
Q ss_pred chHhhhc----CCcEEEEEEECCCHhhH-H---------HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 027438 79 VTSAYYR----GAVGALLVYDISRRQTF-D---------SIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKA 144 (223)
Q Consensus 79 ~~~~~~~----~~d~vi~v~d~~~~~s~-~---------~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~ 144 (223)
.+..++. .++++++|+|.++...+ + .-...+..+. ..+.|+++|+||+|+.... .+...+
T Consensus 79 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~ 152 (201)
T PRK04213 79 EIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDE 152 (201)
T ss_pred HHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHH
Confidence 5555553 35678888887653211 0 0011122222 2368999999999986533 334555
Q ss_pred HHHHcCC---------eEEEeccCCCCCHHHHHHHHHHHHHH
Q 027438 145 LAEAQGL---------FFMETSALDSSNVTAAFQTVVTEIYN 177 (223)
Q Consensus 145 ~~~~~~~---------~~~~~Sa~~~~~i~~~~~~l~~~~~~ 177 (223)
++..+++ +++++||++| |+++++++|...+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 153 IAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 6666654 4899999999 999999999877643
No 143
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.91 E-value=5e-23 Score=151.53 Aligned_cols=153 Identities=20% Similarity=0.174 Sum_probs=107.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEEC-CEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
.|+|+|++|+|||||+++|....+.....++.+.+.....+... +....+.+|||||+..+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999887655433333333333333332 13567889999999998888888899999999999
Q ss_pred ECCCHh---hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC-HHHHHHHHH------HcCCeEEEeccCCCCCH
Q 027438 95 DISRRQ---TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT-TAEGKALAE------AQGLFFMETSALDSSNV 164 (223)
Q Consensus 95 d~~~~~---s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~-~~~~~~~~~------~~~~~~~~~Sa~~~~~i 164 (223)
|+++.. +++.+. .+.. .+.|+++|+||+|+....... .+....+.. ...++++++|+++|.|+
T Consensus 82 d~~~~~~~~~~~~~~----~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (168)
T cd01887 82 AADDGVMPQTIEAIK----LAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGI 154 (168)
T ss_pred ECCCCccHHHHHHHH----HHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCH
Confidence 998843 333222 2222 368999999999987432111 111111111 12357999999999999
Q ss_pred HHHHHHHHHHH
Q 027438 165 TAAFQTVVTEI 175 (223)
Q Consensus 165 ~~~~~~l~~~~ 175 (223)
.+++++|.+..
T Consensus 155 ~~l~~~l~~~~ 165 (168)
T cd01887 155 DDLLEAILLLA 165 (168)
T ss_pred HHHHHHHHHhh
Confidence 99999998754
No 144
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=1.3e-23 Score=150.72 Aligned_cols=148 Identities=17% Similarity=0.229 Sum_probs=105.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchh------hcchHhhh--cC
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF------RAVTSAYY--RG 86 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~------~~~~~~~~--~~ 86 (223)
|+|+++|.|++|||||+|+|++........|..+.+.....+.+.+ ..+.++|+||.-+. ......++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999999876555556666676666777766 56679999994322 22333333 68
Q ss_pred CcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 027438 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTA 166 (223)
Q Consensus 87 ~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 166 (223)
.|++|+|+|.++.+.--.+ ..++... ++|+++|+||+|..+...+.. ....+++.+++|++.+||+++.|+++
T Consensus 79 ~D~ii~VvDa~~l~r~l~l---~~ql~e~---g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLYL---TLQLLEL---GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHH---HHHHHHT---TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHHHHHHH---HHHHHHc---CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 9999999999985432222 2233322 799999999999876443322 35677788899999999999999999
Q ss_pred HHHHH
Q 027438 167 AFQTV 171 (223)
Q Consensus 167 ~~~~l 171 (223)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 99875
No 145
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=5.9e-23 Score=149.59 Aligned_cols=148 Identities=17% Similarity=0.192 Sum_probs=109.7
Q ss_pred EEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhc------chHhhhc--CCcEE
Q 027438 19 LIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA------VTSAYYR--GAVGA 90 (223)
Q Consensus 19 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~~--~~d~v 90 (223)
|+|++|+|||||++++.+........++.+.+.....+.+++ ..+.+|||||+..+.. ++..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998765444445445555555555665 4688999999876554 2455554 89999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027438 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
|+|+|.+++... ..|...+.. .++|+++|+||+|+.....+.. ....++...+++++++||.++.|+++++++
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 999999986442 234444433 2689999999999976544433 345667777899999999999999999999
Q ss_pred HHHHH
Q 027438 171 VVTEI 175 (223)
Q Consensus 171 l~~~~ 175 (223)
|.+.+
T Consensus 152 l~~~~ 156 (158)
T cd01879 152 IAELA 156 (158)
T ss_pred HHHHh
Confidence 87653
No 146
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.91 E-value=6.9e-23 Score=165.29 Aligned_cols=160 Identities=21% Similarity=0.146 Sum_probs=116.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchh----hcchHhh---hcC
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF----RAVTSAY---YRG 86 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----~~~~~~~---~~~ 86 (223)
...|+|+|.|+||||||+++|++........+.++.......+.+++ ...+.+||+||.... ..+...+ +..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 47899999999999999999998654333333333444444444443 356789999996431 1233333 456
Q ss_pred CcEEEEEEECCCH---hhHHHHHHHHHHHhhcCC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCC
Q 027438 87 AVGALLVYDISRR---QTFDSIGRWLNELHTHSD--MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDS 161 (223)
Q Consensus 87 ~d~vi~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (223)
++++|+|+|+++. .+++.+..|.+++..+.. ..+|+++|+||+|+..... ..+..+.+++..+.+++++||+++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg 314 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG 314 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence 9999999999986 678888888887765532 3689999999999976432 234455666677888999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027438 162 SNVTAAFQTVVTEI 175 (223)
Q Consensus 162 ~~i~~~~~~l~~~~ 175 (223)
+|+++++++|.+.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998654
No 147
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=5.9e-23 Score=172.90 Aligned_cols=204 Identities=20% Similarity=0.175 Sum_probs=137.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcc-----------
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV----------- 79 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~----------- 79 (223)
...++|+|+|.+++|||||+++|++..... ...+.++.+.....+..++ ..+.+|||||.......
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 457999999999999999999999865322 2222222222223333344 45679999995432211
Q ss_pred hHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH----HHHcCCeEEE
Q 027438 80 TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKAL----AEAQGLFFME 155 (223)
Q Consensus 80 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~~ 155 (223)
...+++.+|++|+|+|++++.+..... ++..+.. .+.|+++|+||+|+.+... ..+...++ .....+++++
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT-MEEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH-HHHHHHHHHHhcccccCCCEEE
Confidence 123568899999999999886655542 3333332 2689999999999874221 11111122 2223578999
Q ss_pred eccCCCCCHHHHHHHHHHHHHHHHhh------hhhhhhhhhhccCCCCCCceeeecCCCcccccCCCCCCCCC
Q 027438 156 TSALDSSNVTAAFQTVVTEIYNILSR------KVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS 222 (223)
Q Consensus 156 ~Sa~~~~~i~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 222 (223)
+||++|.|++++++.+.+...+...+ +..........+.|..++++.+++|..|.+..||.+..+||
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~p~~~~~~~k~~~~~q~~~~pp~f~~~~n 396 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYENANRRISTSVLNRVLEEAVERHPPPLVKGRRLKIKYATQVGTNPPTFVLFVN 396 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHHHcCCCCCCCCeeeeEEEEEcCCCCCCEEEEEeC
Confidence 99999999999999998655443321 11223444555677789999999999999999999988887
No 148
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.90 E-value=1e-22 Score=165.63 Aligned_cols=155 Identities=23% Similarity=0.217 Sum_probs=111.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcc---------hhhcchHh
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE---------RFRAVTSA 82 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~---------~~~~~~~~ 82 (223)
...++|+++|.+|+|||||+|+|++........+..+.+.....+.+++ ...+.+|||+|.. .+...+ .
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e 264 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-E 264 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence 4558999999999999999999999765433333334445555555632 2478899999962 222222 2
Q ss_pred hhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCC
Q 027438 83 YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSS 162 (223)
Q Consensus 83 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (223)
.+.++|++|+|+|++++.+++.+..|...+......+.|+++|+||+|+.....+ ... .....+++.+||++|.
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v-----~~~-~~~~~~~i~iSAktg~ 338 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRI-----ERL-EEGYPEAVFVSAKTGE 338 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhH-----HHH-HhCCCCEEEEEccCCC
Confidence 4688999999999999988888777776665544446899999999998643221 111 1223468999999999
Q ss_pred CHHHHHHHHHHH
Q 027438 163 NVTAAFQTVVTE 174 (223)
Q Consensus 163 ~i~~~~~~l~~~ 174 (223)
|++++++.|...
T Consensus 339 GI~eL~~~I~~~ 350 (351)
T TIGR03156 339 GLDLLLEAIAER 350 (351)
T ss_pred CHHHHHHHHHhh
Confidence 999999998753
No 149
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.90 E-value=3.9e-23 Score=155.92 Aligned_cols=149 Identities=21% Similarity=0.220 Sum_probs=106.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc--CCCCCCC------------CCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcch
Q 027438 15 FKVVLIGDSAVGKSNLLARFAR--DEFYPNS------------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVT 80 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 80 (223)
.+|+++|++++|||||+++|++ +.+.... ..+.+.+.......+....+.+.+|||||++.+...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 5899999999999999999997 4443321 1223444545555555566789999999999999999
Q ss_pred HhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHH-------HcCCe
Q 027438 81 SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE-VTTAEGKALAE-------AQGLF 152 (223)
Q Consensus 81 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~ 152 (223)
..+++.+|++++|+|+++.. +.....|+..+.. .+.|+++|+||+|+.+.+. ...++..++.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998742 2333344444332 2689999999999865322 12344444432 23678
Q ss_pred EEEeccCCCCCHHHH
Q 027438 153 FMETSALDSSNVTAA 167 (223)
Q Consensus 153 ~~~~Sa~~~~~i~~~ 167 (223)
++++||++|.|+.++
T Consensus 159 iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 159 VLYASAKNGWASLNL 173 (194)
T ss_pred EEEeehhcccccccc
Confidence 999999999887554
No 150
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.90 E-value=1.2e-22 Score=160.59 Aligned_cols=152 Identities=19% Similarity=0.148 Sum_probs=103.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCC-cceeeeEEEEEEECCEEEEEEEEeCCCcchhhc--------chHhhhcC
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKS-TIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA--------VTSAYYRG 86 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~~ 86 (223)
+|+|+|.+|||||||+|+|++......... .++... ...+...+ ...+.+|||||...... .....+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~-i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNR-ISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCc-EEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 689999999999999999999876432222 212222 12222222 24688999999654211 12345789
Q ss_pred CcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEeccCCCCCHH
Q 027438 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSSNVT 165 (223)
Q Consensus 87 ~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 165 (223)
+|++++|+|+++..+.+ ..++..+.. .+.|+++|+||+|+..... ..+....+....+. +++++||++|.|++
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 99999999999876654 334444433 2689999999999864322 22334444444444 69999999999999
Q ss_pred HHHHHHHHHH
Q 027438 166 AAFQTVVTEI 175 (223)
Q Consensus 166 ~~~~~l~~~~ 175 (223)
+++++|.+.+
T Consensus 154 ~L~~~l~~~l 163 (270)
T TIGR00436 154 FLAAFIEVHL 163 (270)
T ss_pred HHHHHHHHhC
Confidence 9999997654
No 151
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=8.3e-23 Score=151.41 Aligned_cols=155 Identities=23% Similarity=0.186 Sum_probs=107.9
Q ss_pred EEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcch----hhcc---hHhhhcCCcEEE
Q 027438 19 LIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER----FRAV---TSAYYRGAVGAL 91 (223)
Q Consensus 19 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~---~~~~~~~~d~vi 91 (223)
|+|++|||||||+++|.+........+..+.......+.+. ....+.+|||||... ...+ ....++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 58999999999999999876422222222223333333333 145678999999632 1122 233567899999
Q ss_pred EEEECCCH------hhHHHHHHHHHHHhhcCC-------CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEecc
Q 027438 92 LVYDISRR------QTFDSIGRWLNELHTHSD-------MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSA 158 (223)
Q Consensus 92 ~v~d~~~~------~s~~~~~~~~~~i~~~~~-------~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (223)
+|+|++++ .+++....|...+..... .+.|+++|+||+|+..................+..++++||
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999998 578888888777765432 36999999999999764443333233444455677999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 027438 159 LDSSNVTAAFQTVVTE 174 (223)
Q Consensus 159 ~~~~~i~~~~~~l~~~ 174 (223)
+++.|++++++++...
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999998754
No 152
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=6.9e-23 Score=147.12 Aligned_cols=160 Identities=21% Similarity=0.391 Sum_probs=131.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEE
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 90 (223)
.....+|+++|-.+|||||++.+|..++.... .||+|.......+ ..+.+++||.+|++.++.+|.+++++.+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEE
Confidence 46679999999999999999999998887655 7888877766655 368899999999999999999999999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCC-CCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HcCCeEEEeccCCCCCH
Q 027438 91 LLVYDISRRQTFDSIGRWLNELHTHSD-MNVVTILVGNKSDLKDAREVTTAEGKALAE-----AQGLFFMETSALDSSNV 164 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i 164 (223)
|||+|.++++.+......+..+....+ ...|+++.+||.|+..+ .+..++.+... .....+..|+|.+|+|+
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a--ls~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL 166 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA--LSAAEITNKLGLHSLRSRNWHIQSTCAISGEGL 166 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc--CCHHHHHhHhhhhccCCCCcEEeeccccccccH
Confidence 999999999999999888777766544 57999999999999864 33444333322 23345788999999999
Q ss_pred HHHHHHHHHHHHH
Q 027438 165 TAAFQTVVTEIYN 177 (223)
Q Consensus 165 ~~~~~~l~~~~~~ 177 (223)
.+.++++...+.+
T Consensus 167 ~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 167 YEGLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887643
No 153
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.89 E-value=1.4e-21 Score=135.45 Aligned_cols=163 Identities=22% Similarity=0.346 Sum_probs=134.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCCCC--CCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchh-hcchHhhhcCCcE
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDEFYP--NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF-RAVTSAYYRGAVG 89 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-~~~~~~~~~~~d~ 89 (223)
..-+|+|+|..++|||++++.|+.++..+ ...+|++..+....-+-.+..-.+.|+||.|...+ ..+..+++.-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 45799999999999999999998765543 33455444443333333455567889999997776 6778889999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 027438 90 ALLVYDISRRQTFDSIGRWLNELHTHS-DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168 (223)
Q Consensus 90 vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 168 (223)
+++||+..+++||+.+.-....|.... .+.+|+++.+||+|+.+++++..+.+..+++...+..+++++.+...+-+.|
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf 167 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF 167 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence 999999999999998876666665553 3469999999999999989999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 027438 169 QTVVTEI 175 (223)
Q Consensus 169 ~~l~~~~ 175 (223)
..++.++
T Consensus 168 ~~l~~rl 174 (198)
T KOG3883|consen 168 TYLASRL 174 (198)
T ss_pred HHHHHhc
Confidence 9998766
No 154
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.89 E-value=2.8e-22 Score=145.64 Aligned_cols=146 Identities=24% Similarity=0.233 Sum_probs=105.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcc--------hHhhhc
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV--------TSAYYR 85 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~~~ 85 (223)
++|+++|++|+|||||++++.+..... ...+..+..........+ ...+.+|||||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999876422 222232333333344444 356789999996554322 224567
Q ss_pred CCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 027438 86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVT 165 (223)
Q Consensus 86 ~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 165 (223)
.+|++++|+|++++.+......|.. ....|+++|+||+|+.+.... .....+.+++++||+++.|+.
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 8999999999999877766554433 236999999999998764433 334456789999999999999
Q ss_pred HHHHHHHHHH
Q 027438 166 AAFQTVVTEI 175 (223)
Q Consensus 166 ~~~~~l~~~~ 175 (223)
+++++|...+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999987643
No 155
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=6.3e-22 Score=165.39 Aligned_cols=154 Identities=23% Similarity=0.244 Sum_probs=115.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcc--------hHh
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV--------TSA 82 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~ 82 (223)
...++|+|+|++|||||||+|+|++.... ....+.++.+.....+.+++ ..+.+|||||...+... ...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 45689999999999999999999986532 22334444555555666665 45679999997654332 235
Q ss_pred hhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCC
Q 027438 83 YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSS 162 (223)
Q Consensus 83 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (223)
+++.+|++++|+|++++.+++.. |+..+.. .+.|+++|+||+|+.+. ....++...+.+++.+||++ .
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~ 346 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-L 346 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-C
Confidence 67899999999999998887765 6665532 36899999999998643 12345566778899999998 6
Q ss_pred CHHHHHHHHHHHHHHHH
Q 027438 163 NVTAAFQTVVTEIYNIL 179 (223)
Q Consensus 163 ~i~~~~~~l~~~~~~~~ 179 (223)
|++++|+.|.+.+.+..
T Consensus 347 gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 347 KIKALVDLLTQKINAFY 363 (442)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999998876654
No 156
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.89 E-value=5.7e-22 Score=137.88 Aligned_cols=114 Identities=33% Similarity=0.637 Sum_probs=88.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC--CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEE
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFY--PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 93 (223)
||+|+|++|||||||+++|.+.... .......+.+..............+.+||++|.+.+...+..++..+|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998775 12223334445555666777777799999999998888888889999999999
Q ss_pred EECCCHhhHHHHHH---HHHHHhhcCCCCCcEEEEEeCCC
Q 027438 94 YDISRRQTFDSIGR---WLNELHTHSDMNVVTILVGNKSD 130 (223)
Q Consensus 94 ~d~~~~~s~~~~~~---~~~~i~~~~~~~~piilv~nK~D 130 (223)
||++++.+++.+.. |+..+..... ..|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~-~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDK-NIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSS-CSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCC-CCCEEEEEeccC
Confidence 99999999998754 5666655433 599999999998
No 157
>PRK15494 era GTPase Era; Provisional
Probab=99.89 E-value=7e-22 Score=160.49 Aligned_cols=154 Identities=22% Similarity=0.299 Sum_probs=105.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCC-CcceeeeEEEEEEECCEEEEEEEEeCCCcch-hhcch-------Hh
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDINGKEVKAQIWDTAGQER-FRAVT-------SA 82 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~-------~~ 82 (223)
+..++|+++|.+|||||||+++|++..+..... +.++.......+..++ ..+.+|||||... +..+. ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 455799999999999999999999877643211 1112222333344444 4678999999743 22221 12
Q ss_pred hhcCCcEEEEEEECCCHhhHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CeEEEeccC
Q 027438 83 YYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG--LFFMETSAL 159 (223)
Q Consensus 83 ~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 159 (223)
.+..+|++|+|+|..+ ++..+. .|+..+... +.|+++|+||+|+... ...+..+++...+ ..+|++||+
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence 4679999999999765 344443 455555432 4677889999998642 2345555555443 569999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 027438 160 DSSNVTAAFQTVVTEI 175 (223)
Q Consensus 160 ~~~~i~~~~~~l~~~~ 175 (223)
+|.|+++++++|...+
T Consensus 200 tg~gv~eL~~~L~~~l 215 (339)
T PRK15494 200 SGKNIDGLLEYITSKA 215 (339)
T ss_pred CccCHHHHHHHHHHhC
Confidence 9999999999998754
No 158
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.89 E-value=2.2e-21 Score=171.47 Aligned_cols=202 Identities=18% Similarity=0.158 Sum_probs=139.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcch----------hhcch-
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER----------FRAVT- 80 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~- 80 (223)
..++|+|+|.+|||||||+++|++.... ....+.++.+.....+.+++.. +.+|||||... +..+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999987642 2223333444444555566644 55999999532 11111
Q ss_pred HhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHH-HHHHH----cCCeEEE
Q 027438 81 SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGK-ALAEA----QGLFFME 155 (223)
Q Consensus 81 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~-~~~~~----~~~~~~~ 155 (223)
...++.+|++++|+|++++.+...+.- +..+.. .++|+++|+||+|+.+... .+... .+... ...+++.
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 234688999999999999877776543 333332 3689999999999975321 11111 12111 2346799
Q ss_pred eccCCCCCHHHHHHHHHHHHHHHHhh------hhhhhhhhhhccCCCCCCceeeecCCCcccccCCCCCCCCC
Q 027438 156 TSALDSSNVTAAFQTVVTEIYNILSR------KVMISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCS 222 (223)
Q Consensus 156 ~Sa~~~~~i~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 222 (223)
+||++|.|++++++.+.+.+.....+ +..........+.|..++++.+++|..|-...||.+..+||
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~l~~~~~~~~~p~~~g~~~ki~y~~q~~~~Pp~f~~f~~ 673 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALESWDQRIPTGKLNAFLGKIQAEHPHPLRGGKQPRILFATQASTRPPRFVIFTT 673 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhhCCCCccCCeeeeEEEEECCCCCCCEEEEEcC
Confidence 99999999999999999876542221 22233444556667788999999999999999999887765
No 159
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=4.2e-21 Score=158.80 Aligned_cols=159 Identities=18% Similarity=0.150 Sum_probs=114.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcch----hhcchHhh---hcCC
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER----FRAVTSAY---YRGA 87 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~~~~~---~~~~ 87 (223)
..|+|+|.|+||||||+++|++........+.++.......+.+. ....+.+||+||... ...+...+ +..+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 489999999999999999999866433333333444333333333 135688999999632 12233333 4569
Q ss_pred cEEEEEEECCCH---hhHHHHHHHHHHHhhcCC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCC
Q 027438 88 VGALLVYDISRR---QTFDSIGRWLNELHTHSD--MNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSS 162 (223)
Q Consensus 88 d~vi~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (223)
+++|+|+|+++. .+++....|...+..+.. .++|+++|+||+|+... .+....+.+..+.+++++||+++.
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tge 313 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQ 313 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCC
Confidence 999999999864 567777788888766533 36899999999998432 344556666667789999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 027438 163 NVTAAFQTVVTEIYNI 178 (223)
Q Consensus 163 ~i~~~~~~l~~~~~~~ 178 (223)
|+++++++|.+.+.+.
T Consensus 314 GI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 314 GLDELLYAVAELLEET 329 (424)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999998876554
No 160
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.88 E-value=1.2e-21 Score=146.81 Aligned_cols=156 Identities=20% Similarity=0.189 Sum_probs=109.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcc--------------eeeeEEEEEEECCEEEEEEEEeCCCcchhhcchH
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTI--------------GVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTS 81 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~ 81 (223)
+|+|+|.+|+|||||+++|.+........... +.+.......+......+.+|||||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 58999999999999999999876654332111 1112222222222346788999999998888888
Q ss_pred hhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHH-----------
Q 027438 82 AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV--TTAEGKALAEA----------- 148 (223)
Q Consensus 82 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~--~~~~~~~~~~~----------- 148 (223)
.+++.+|++++|+|..++.+... ..++..+.. .+.|+++|+||+|+...... ..++.++....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT 156 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence 99999999999999988654332 233333332 36999999999998752221 12233333332
Q ss_pred ---cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027438 149 ---QGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 149 ---~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
...+++++||++|.|+++++++|.+.+
T Consensus 157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 157 RNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred ccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 346699999999999999999998764
No 161
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.88 E-value=2e-21 Score=167.66 Aligned_cols=156 Identities=22% Similarity=0.263 Sum_probs=115.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCC-------CCCCCC------CcceeeeEEEEEEE-----CCEEEEEEEEeCCCcch
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDE-------FYPNSK------STIGVEFQTQKMDI-----NGKEVKAQIWDTAGQER 75 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~-------~~~~~~------~~~~~~~~~~~~~~-----~~~~~~~~l~D~~G~~~ 75 (223)
..+|+|+|+.++|||||+++|+... +...+. ...|.++....+.+ ++..+.+.||||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 5689999999999999999998642 111111 11244444333222 46678999999999999
Q ss_pred hhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC---e
Q 027438 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL---F 152 (223)
Q Consensus 76 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~---~ 152 (223)
+...+..+++.+|++|+|+|+++..+.+....|...+. .+.|+++|+||+|+.... ..+...++...+++ .
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence 99999999999999999999999777777766655443 268999999999986432 12223455555565 3
Q ss_pred EEEeccCCCCCHHHHHHHHHHHH
Q 027438 153 FMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 153 ~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
++++||++|.|++++|++|.+.+
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhC
Confidence 89999999999999999997654
No 162
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.88 E-value=8.8e-22 Score=148.28 Aligned_cols=157 Identities=17% Similarity=0.116 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC----CCCCCC-----CCcceeeeEEEEEE----------ECCEEEEEEEEeCCCcch
Q 027438 15 FKVVLIGDSAVGKSNLLARFARD----EFYPNS-----KSTIGVEFQTQKMD----------INGKEVKAQIWDTAGQER 75 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~----~~~~~~-----~~~~~~~~~~~~~~----------~~~~~~~~~l~D~~G~~~ 75 (223)
++|+++|++++|||||+++|++. .+.... ..+.+.......+. ..+..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999973 111111 12222222222222 123367889999999876
Q ss_pred hhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHHHHHH-HH-----
Q 027438 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE--VTTAEGKAL-AE----- 147 (223)
Q Consensus 76 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~-~~----- 147 (223)
+..........+|++++|+|+.+.........|. +.... +.|+++|+||+|+..... ...++..+. ..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5444444557789999999998854433333222 11112 579999999999874322 112222221 11
Q ss_pred -HcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027438 148 -AQGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 148 -~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
..+++++++||++|.|+++++++|..++
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 2357899999999999999999998765
No 163
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.88 E-value=1.6e-21 Score=163.70 Aligned_cols=149 Identities=22% Similarity=0.220 Sum_probs=110.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcc--------hHhh
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV--------TSAY 83 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~ 83 (223)
..++|+++|++|+|||||+|+|++.... ....+.++.++....+.+++ ..+.+|||||...+... ....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 3589999999999999999999987642 22333334444455555555 56789999997654332 2235
Q ss_pred hcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCC
Q 027438 84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSN 163 (223)
Q Consensus 84 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (223)
+..+|++++|+|++++.+++....|.. ..+.|+++|+||+|+.+..... ...+.+++++||++|.|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 789999999999999888776555543 2368999999999997533221 33456799999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027438 164 VTAAFQTVVTEIYN 177 (223)
Q Consensus 164 i~~~~~~l~~~~~~ 177 (223)
+++++++|.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887643
No 164
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.88 E-value=1.8e-21 Score=141.96 Aligned_cols=140 Identities=17% Similarity=0.218 Sum_probs=99.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcc----hhhcchHhhhcCCcEEE
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE----RFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----~~~~~~~~~~~~~d~vi 91 (223)
+|+++|.+++|||||+++|.+... . ...+.+ ..+... .+|||||.. .+.......++.+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~-~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-L-ARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-c-CccceE-------EEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 799999999999999999886431 1 112211 122222 269999962 22222233468999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC--eEEEeccCCCCCHHHHHH
Q 027438 92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL--FFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~ 169 (223)
+|+|+++..++ +..|+..+. .+.|+++++||+|+.. ...+...+++...+. +++++||++|.|++++|+
T Consensus 70 ~v~d~~~~~s~--~~~~~~~~~----~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESR--LPAGLLDIG----VSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCcccc--cCHHHHhcc----CCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 99999988765 334544432 2578999999999864 234556677777775 899999999999999999
Q ss_pred HHHHHHHH
Q 027438 170 TVVTEIYN 177 (223)
Q Consensus 170 ~l~~~~~~ 177 (223)
.+.+.+.+
T Consensus 141 ~l~~~~~~ 148 (158)
T PRK15467 141 YLASLTKQ 148 (158)
T ss_pred HHHHhchh
Confidence 99876643
No 165
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=1.5e-21 Score=165.30 Aligned_cols=154 Identities=22% Similarity=0.195 Sum_probs=105.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCcch--------hhcchHhh
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER--------FRAVTSAY 83 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~ 83 (223)
..++|+|+|.+|||||||+++|++..... ...+..+.+.........+ ..+.+|||||.+. +......+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 34799999999999999999999875432 2223323333333344444 4577999999652 33345567
Q ss_pred hcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEeccCCCC
Q 027438 84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSS 162 (223)
Q Consensus 84 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 162 (223)
++.+|++|+|+|++++.++.. ..|...+.. .++|+++|+||+|+.... .+....+ ..+. ..+++||++|.
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~ 185 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGR 185 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCC
Confidence 889999999999998765432 334444332 369999999999986421 1222222 2333 25799999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027438 163 NVTAAFQTVVTEIYN 177 (223)
Q Consensus 163 ~i~~~~~~l~~~~~~ 177 (223)
|++++|++|+..+.+
T Consensus 186 gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 186 GVGDLLDAVLAALPE 200 (472)
T ss_pred CcHHHHHHHHhhccc
Confidence 999999999987744
No 166
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=2e-21 Score=157.76 Aligned_cols=205 Identities=20% Similarity=0.211 Sum_probs=143.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcc-----------hH
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV-----------TS 81 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-----------~~ 81 (223)
..++|+|+|.|++|||||+|+|++.+.....+.. |++.......+..+...+.++||+|...-... ..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~a-GTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIA-GTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCC-CccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 5799999999999999999999997665443333 55555555444433345569999994432222 22
Q ss_pred hhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcCCeEEEe
Q 027438 82 AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALA-----EAQGLFFMET 156 (223)
Q Consensus 82 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 156 (223)
..+..+|++++|+|.+.+-+-+.. .....+ ...+.++|+|+||+|+.+.++...++.+... .-..++++.+
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~-~ia~~i---~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDL-RIAGLI---EEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHH-HHHHHH---HHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 356789999999999987653332 112222 2337899999999999875444444433222 2224679999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHhhhh-------hhhhhhhhccCCCCCCceeeecCCCcccccCCCCCCCCCC
Q 027438 157 SALDSSNVTAAFQTVVTEIYNILSRKV-------MISQELKQKDSSSFNGKTVVLEGEKKEADAEPKKAGCCSS 223 (223)
Q Consensus 157 Sa~~~~~i~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 223 (223)
||+++.++..+|+.+.. +++....+. .........+.+..++++.+++|-.|-.-+||.+..+||.
T Consensus 332 SA~~~~~i~~l~~~i~~-~~~~~~~ri~Ts~LN~~l~~a~~~~pP~~~~G~r~ki~Ya~q~~~~PP~fvlf~N~ 404 (444)
T COG1160 332 SALTGQGLDKLFEAIKE-IYECATRRISTSLLNRVLEDAVAKHPPPVRYGRRLKIKYATQVSTNPPTFVLFGNR 404 (444)
T ss_pred EecCCCChHHHHHHHHH-HHHHhccccCHHHHHHHHHHHHHhCCCCccCCceEEEEEEecCCCCCCEEEEEecc
Confidence 99999999999999874 555555444 2233344445666679999999999999999999998873
No 167
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=1.1e-21 Score=142.68 Aligned_cols=146 Identities=19% Similarity=0.118 Sum_probs=99.3
Q ss_pred EEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhc--------chHhhhcCCc
Q 027438 18 VLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA--------VTSAYYRGAV 88 (223)
Q Consensus 18 ~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~~~d 88 (223)
+++|.+|+|||||+++|.+.... ....+..+.+.........+ ..+.+|||||...+.. .....++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999986422 11222223333333343444 5788999999877443 3345678899
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEeccCCCCCHHHH
Q 027438 89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSSNVTAA 167 (223)
Q Consensus 89 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~ 167 (223)
++++|+|..++.+.... .....+.. .+.|+++|+||+|+...... .......+. +++++|++++.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999876543332 12222222 25899999999998764222 222334565 6899999999999999
Q ss_pred HHHHHHH
Q 027438 168 FQTVVTE 174 (223)
Q Consensus 168 ~~~l~~~ 174 (223)
+++|+++
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9999865
No 168
>PRK11058 GTPase HflX; Provisional
Probab=99.88 E-value=3.3e-21 Score=160.24 Aligned_cols=158 Identities=21% Similarity=0.215 Sum_probs=110.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchh--hcchH------hhhc
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF--RAVTS------AYYR 85 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--~~~~~------~~~~ 85 (223)
.++|+|+|.+|||||||+|+|++........+..+.+.....+.+.+. ..+.+|||+|..+. ...+. ..++
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 368999999999999999999987654333333344444445555442 25679999997331 12222 2358
Q ss_pred CCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEeccCCCCCH
Q 027438 86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-FMETSALDSSNV 164 (223)
Q Consensus 86 ~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i 164 (223)
.+|++|+|+|++++.+++.+..|...+......+.|+++|+||+|+..... ... . ....+.+ ++.+||++|.|+
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~-~-~~~~~~~~~v~ISAktG~GI 350 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRI-D-RDEENKPIRVWLSAQTGAGI 350 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHH-H-HHhcCCCceEEEeCCCCCCH
Confidence 899999999999998888776555555444334689999999999864211 111 1 1123555 588999999999
Q ss_pred HHHHHHHHHHHHH
Q 027438 165 TAAFQTVVTEIYN 177 (223)
Q Consensus 165 ~~~~~~l~~~~~~ 177 (223)
++++++|...+..
T Consensus 351 deL~e~I~~~l~~ 363 (426)
T PRK11058 351 PLLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999987744
No 169
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=4.7e-21 Score=160.44 Aligned_cols=164 Identities=17% Similarity=0.105 Sum_probs=112.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchh----hcc---hHhhhc
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF----RAV---TSAYYR 85 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----~~~---~~~~~~ 85 (223)
....|+|+|.|+||||||+++|++........+.++.......+.+.+ ..+.+||+||.... ..+ ....+.
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 357899999999999999999998654433334434444444444444 57889999995321 111 222457
Q ss_pred CCcEEEEEEECCCH----hhHHHHHHHHHHHhhcC-----------CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC
Q 027438 86 GAVGALLVYDISRR----QTFDSIGRWLNELHTHS-----------DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG 150 (223)
Q Consensus 86 ~~d~vi~v~d~~~~----~s~~~~~~~~~~i~~~~-----------~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~ 150 (223)
.+|++|+|+|+++. ..++.+..|..++..+. ...+|+++|+||+|+.+..+. .+.........+
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g 314 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARG 314 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcC
Confidence 79999999999853 34555555555554332 136899999999998754332 222233334557
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 027438 151 LFFMETSALDSSNVTAAFQTVVTEIYNIL 179 (223)
Q Consensus 151 ~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 179 (223)
+++|++||+++.|+++++++|.+.+.+.+
T Consensus 315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 315 WPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 89999999999999999999998876654
No 170
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.87 E-value=1.4e-20 Score=161.79 Aligned_cols=154 Identities=18% Similarity=0.190 Sum_probs=110.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEE
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 90 (223)
....++|+++|++++|||||+++|.+..+.....+.++.+.....+.+++. ..+.||||||++.|..++...+..+|++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 345689999999999999999999988776554444444444444444332 2678999999999999998889999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-------cC--CeEEEeccCCC
Q 027438 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEA-------QG--LFFMETSALDS 161 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~-------~~--~~~~~~Sa~~~ 161 (223)
|+|+|+++...-+....| ... ...+.|+++++||+|+... ..++....... ++ .+++++||++|
T Consensus 163 ILVVda~dgv~~qT~e~i-~~~---~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktG 235 (587)
T TIGR00487 163 VLVVAADDGVMPQTIEAI-SHA---KAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTG 235 (587)
T ss_pred EEEEECCCCCCHhHHHHH-HHH---HHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCC
Confidence 999999874322222222 111 2236899999999998642 22333333222 22 46999999999
Q ss_pred CCHHHHHHHHH
Q 027438 162 SNVTAAFQTVV 172 (223)
Q Consensus 162 ~~i~~~~~~l~ 172 (223)
.|+++++++|.
T Consensus 236 eGI~eLl~~I~ 246 (587)
T TIGR00487 236 DGIDELLDMIL 246 (587)
T ss_pred CChHHHHHhhh
Confidence 99999999986
No 171
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=8.8e-21 Score=139.89 Aligned_cols=155 Identities=24% Similarity=0.195 Sum_probs=102.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhc-----------chH
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNS-KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA-----------VTS 81 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-----------~~~ 81 (223)
.++|+++|++|+|||||+++|++....... .+..........+...+. .+.+|||||...... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 579999999999999999999987543222 222222222333444443 467999999643210 112
Q ss_pred hhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHH-HHHHHHHc----CCeEEEe
Q 027438 82 AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAE-GKALAEAQ----GLFFMET 156 (223)
Q Consensus 82 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~-~~~~~~~~----~~~~~~~ 156 (223)
..+..+|++++|+|+.++.+..... ++..+.. .+.|+++++||+|+........+. ...+.... ..+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 3457899999999999987755432 3333222 258999999999987643222222 22232333 3679999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 027438 157 SALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 157 Sa~~~~~i~~~~~~l~~~ 174 (223)
||+++.|++++++.+.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999998753
No 172
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.87 E-value=1.1e-20 Score=138.27 Aligned_cols=156 Identities=22% Similarity=0.131 Sum_probs=103.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhc--------chHhhhc
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA--------VTSAYYR 85 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~ 85 (223)
..+|+++|++|+|||||++++.+.......... .................+.+|||||...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKP-QTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCC-CceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 578999999999999999999987653322211 1111122222333346788999999654322 2334578
Q ss_pred CCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-CCeEEEeccCCCCCH
Q 027438 86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ-GLFFMETSALDSSNV 164 (223)
Q Consensus 86 ~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i 164 (223)
.+|++++|+|.+++.+. ....+...+... +.|+++|+||+|+....+...+....+.... ..+++.+|++++.|+
T Consensus 82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 82 DVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred hCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 89999999999987221 112223333322 5899999999998743332333344444444 367999999999999
Q ss_pred HHHHHHHHHH
Q 027438 165 TAAFQTVVTE 174 (223)
Q Consensus 165 ~~~~~~l~~~ 174 (223)
+++++.|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999999764
No 173
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.86 E-value=1.8e-20 Score=141.40 Aligned_cols=156 Identities=17% Similarity=0.210 Sum_probs=104.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc----------chhhcch
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ----------ERFRAVT 80 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~----------~~~~~~~ 80 (223)
.+..++|+|+|++|+|||||+++|++..+.....++.+.+........ ...+.+|||||. +.+....
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 456799999999999999999999987644444444454443332222 257889999994 2334444
Q ss_pred HhhhcC---CcEEEEEEECCCHhhHHH--HHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHHcCCeE
Q 027438 81 SAYYRG---AVGALLVYDISRRQTFDS--IGRWLNELHTHSDMNVVTILVGNKSDLKDAREV--TTAEGKALAEAQGLFF 153 (223)
Q Consensus 81 ~~~~~~---~d~vi~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~ 153 (223)
..+++. .+++++++|.+++.+... +..|+. . .+.|+++++||+|+.+..+. ..++..........++
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~---~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~ 171 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLK---E---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEV 171 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHH---H---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCce
Confidence 555554 467888899887544322 223332 1 26889999999998754222 1222334444446789
Q ss_pred EEeccCCCCCHHHHHHHHHHHH
Q 027438 154 METSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 154 ~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
+++||+++.|++++++.|...+
T Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 172 ILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999987655
No 174
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.86 E-value=7.1e-21 Score=144.46 Aligned_cols=155 Identities=21% Similarity=0.195 Sum_probs=100.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCC---C--CCCcceeeeEEEEEE-----------------------EC--C----
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYP---N--SKSTIGVEFQTQKMD-----------------------IN--G---- 60 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~---~--~~~~~~~~~~~~~~~-----------------------~~--~---- 60 (223)
++|+++|+.|+|||||+.++.+..... . ...+....+....+. .. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 579999999999999999997642111 0 011111111111110 00 1
Q ss_pred EEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCH----hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027438 61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRR----QTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE 136 (223)
Q Consensus 61 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~ 136 (223)
....+.||||||++.+...+...+..+|++++|+|++++ .+++.+..| ... . ..|+++|+||+|+.....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~~-~-~~~iiivvNK~Dl~~~~~ 154 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EIM-G-LKHIIIVQNKIDLVKEEQ 154 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HHc-C-CCcEEEEEEchhccCHHH
Confidence 126789999999998888888888899999999999874 233333222 111 1 257899999999875322
Q ss_pred c--CHHHHHHHHHH---cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027438 137 V--TTAEGKALAEA---QGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 137 ~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
. ..++.+.+... .+++++++||++|+|++++++.|.+.+
T Consensus 155 ~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 155 ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 1 12333344333 256799999999999999999987644
No 175
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.86 E-value=1.4e-20 Score=162.40 Aligned_cols=152 Identities=20% Similarity=0.223 Sum_probs=112.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDE---FYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 91 (223)
+.|+++|++++|||||+++|++.. +..+...+++.+.....+..++ ..+.+||+||++.|...+...+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 478999999999999999999743 3333344445555555555555 77899999999999888888899999999
Q ss_pred EEEECCC---HhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCccc--CHHHHHHHHHHc----CCeEEEeccCCC
Q 027438 92 LVYDISR---RQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDAREV--TTAEGKALAEAQ----GLFFMETSALDS 161 (223)
Q Consensus 92 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~ 161 (223)
+|+|+++ +.+++.+. .+.. .+.| +++|+||+|+.+...+ ..++...+.... +++++++||++|
T Consensus 79 LVVDa~~G~~~qT~ehl~----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHHH----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999998 45554432 2221 1566 9999999999754322 233445555544 578999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027438 162 SNVTAAFQTVVTEI 175 (223)
Q Consensus 162 ~~i~~~~~~l~~~~ 175 (223)
.|++++++.|...+
T Consensus 152 ~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 152 QGIGELKKELKNLL 165 (581)
T ss_pred CCchhHHHHHHHHH
Confidence 99999999887654
No 176
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=2.3e-20 Score=153.58 Aligned_cols=161 Identities=21% Similarity=0.107 Sum_probs=113.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhh-------cchHhhhcCC
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR-------AVTSAYYRGA 87 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~ 87 (223)
..|+|+|.|+||||||+|+|++........+.++.......+.+.+ ...+.++||||..... ......+..+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 4899999999999999999998654333334434444444444432 2357899999964311 1122346789
Q ss_pred cEEEEEEECC---CHhhHHHHHHHHHHHhhcCC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CeEEEeccCC
Q 027438 88 VGALLVYDIS---RRQTFDSIGRWLNELHTHSD--MNVVTILVGNKSDLKDAREVTTAEGKALAEAQG--LFFMETSALD 160 (223)
Q Consensus 88 d~vi~v~d~~---~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 160 (223)
+++++|+|++ +...++....|++.+..+.. ...|+++|+||+|+.....+ .+....+....+ .+++.+||++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~t 317 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAAS 317 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCC
Confidence 9999999998 45567777888887765532 35899999999998753332 233444544444 4689999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 027438 161 SSNVTAAFQTVVTEIYN 177 (223)
Q Consensus 161 ~~~i~~~~~~l~~~~~~ 177 (223)
+.|++++++.|.+.+.+
T Consensus 318 g~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 318 GLGVKELCWDLMTFIEE 334 (390)
T ss_pred CcCHHHHHHHHHHHhhh
Confidence 99999999999887754
No 177
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.86 E-value=1.2e-20 Score=140.55 Aligned_cols=149 Identities=18% Similarity=0.207 Sum_probs=99.4
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcc----------hhhcc
Q 027438 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE----------RFRAV 79 (223)
Q Consensus 10 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~ 79 (223)
+....++|+|+|++|+|||||+++|++..+.....++.+.+.....+..++ .+.+|||||.. .+...
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 446678999999999999999999998754333334444444444343343 57899999942 23334
Q ss_pred hHhhhc---CCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHcC--Ce
Q 027438 80 TSAYYR---GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE--VTTAEGKALAEAQG--LF 152 (223)
Q Consensus 80 ~~~~~~---~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~ 152 (223)
...+++ .++++++|+|.+++.+..... ++..+.. .+.|+++++||+|+..+.+ ...++.+......+ ..
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~ 166 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS 166 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence 445554 357999999998865544432 2233332 2689999999999875322 22344445555543 46
Q ss_pred EEEeccCCCCCHH
Q 027438 153 FMETSALDSSNVT 165 (223)
Q Consensus 153 ~~~~Sa~~~~~i~ 165 (223)
+|++||++|+|++
T Consensus 167 v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 167 VQLFSSLKKTGID 179 (179)
T ss_pred eEEEECCCCCCCC
Confidence 9999999999974
No 178
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.86 E-value=3.6e-21 Score=132.58 Aligned_cols=154 Identities=23% Similarity=0.410 Sum_probs=125.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEE
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 92 (223)
..+.+.++|-.+||||||++.+..+.+.....|+.|.+.... ....+.+.+||.+|+..+..+|+.|.+.++++++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~----tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEe----ccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 457889999999999999999998888888888888766543 4467889999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--------CeEEEeccCCCCC
Q 027438 93 VYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG--------LFFMETSALDSSN 163 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~ 163 (223)
|+|..+++.++..+..+..+... .-.++|+++.|||.|+..+ .+... +..+.| +-+|.+|+++..|
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~---li~rmgL~sitdREvcC~siScke~~N 169 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIA---LIERMGLSSITDREVCCFSISCKEKVN 169 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHHH---HHHHhCccccccceEEEEEEEEcCCcc
Confidence 99999998888777766665443 3347999999999998864 22222 222333 3479999999999
Q ss_pred HHHHHHHHHHHH
Q 027438 164 VTAAFQTVVTEI 175 (223)
Q Consensus 164 i~~~~~~l~~~~ 175 (223)
++.+..||+++-
T Consensus 170 id~~~~Wli~hs 181 (186)
T KOG0075|consen 170 IDITLDWLIEHS 181 (186)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 179
>PRK00089 era GTPase Era; Reviewed
Probab=99.85 E-value=2.8e-20 Score=148.85 Aligned_cols=156 Identities=21% Similarity=0.211 Sum_probs=103.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhh--------cchHhhhc
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR--------AVTSAYYR 85 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--------~~~~~~~~ 85 (223)
.-.|+|+|++|||||||+|+|++...........++......+... ....+.+|||||..... ......+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 4569999999999999999999876643332221111111122122 23678899999964422 22334568
Q ss_pred CCcEEEEEEECCCHhhHHHHHHH-HHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CeEEEeccCCCCC
Q 027438 86 GAVGALLVYDISRRQTFDSIGRW-LNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQG-LFFMETSALDSSN 163 (223)
Q Consensus 86 ~~d~vi~v~d~~~~~s~~~~~~~-~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 163 (223)
.+|++++|+|+++..+ ....+ +..+. ..+.|+++|+||+|+.............+....+ .+++++||+++.|
T Consensus 84 ~~D~il~vvd~~~~~~--~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 84 DVDLVLFVVDADEKIG--PGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred cCCEEEEEEeCCCCCC--hhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 8999999999998322 22222 22222 2268999999999997432323334444544444 5699999999999
Q ss_pred HHHHHHHHHHHH
Q 027438 164 VTAAFQTVVTEI 175 (223)
Q Consensus 164 i~~~~~~l~~~~ 175 (223)
+++++++|...+
T Consensus 159 v~~L~~~L~~~l 170 (292)
T PRK00089 159 VDELLDVIAKYL 170 (292)
T ss_pred HHHHHHHHHHhC
Confidence 999999998765
No 180
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.85 E-value=3.5e-20 Score=161.67 Aligned_cols=154 Identities=23% Similarity=0.254 Sum_probs=111.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceee--eEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCc
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVE--FQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
....+.|+|+|++++|||||+++|.+..+........+.+ .+...+..++....+.||||||+..|..++...+..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 3566899999999999999999999876654333222222 22233333445688999999999999999999999999
Q ss_pred EEEEEEECCCH---hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH-H------HHHcC--CeEEEe
Q 027438 89 GALLVYDISRR---QTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKA-L------AEAQG--LFFMET 156 (223)
Q Consensus 89 ~vi~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~-~------~~~~~--~~~~~~ 156 (223)
++|+|+|+++. .+++.+.. + ...+.|+|+++||+|+.... .++... + ...++ ++++++
T Consensus 321 iaILVVDA~dGv~~QT~E~I~~----~---k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~V 390 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEAINY----I---QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPI 390 (742)
T ss_pred EEEEEEECcCCCChhhHHHHHH----H---HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEE
Confidence 99999999884 34433221 2 22368999999999987532 222211 1 22233 679999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 027438 157 SALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 157 Sa~~~~~i~~~~~~l~~~ 174 (223)
||++|.|+++++++|...
T Consensus 391 SAktG~GIdeLle~I~~l 408 (742)
T CHL00189 391 SASQGTNIDKLLETILLL 408 (742)
T ss_pred ECCCCCCHHHHHHhhhhh
Confidence 999999999999998764
No 181
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.85 E-value=4.2e-20 Score=162.47 Aligned_cols=154 Identities=20% Similarity=0.211 Sum_probs=110.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEE
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 90 (223)
......|+|+|+.++|||||+++|.+..+.......++.+.....+.+++ ..++||||||+..|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 45678999999999999999999998776544433333333333444444 5688999999999999999889999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHH-------HHHHHcC--CeEEEeccCCC
Q 027438 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGK-------ALAEAQG--LFFMETSALDS 161 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~-------~~~~~~~--~~~~~~Sa~~~ 161 (223)
|+|+|+++...-+....| ......+.|+|+++||+|+...+ .+... .++..++ ++++++||++|
T Consensus 365 ILVVdAddGv~~qT~e~i----~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG 437 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAI----NHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG 437 (787)
T ss_pred EEEEECCCCCCHhHHHHH----HHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence 999999884222222222 11222368999999999996532 11111 1123333 67999999999
Q ss_pred CCHHHHHHHHHH
Q 027438 162 SNVTAAFQTVVT 173 (223)
Q Consensus 162 ~~i~~~~~~l~~ 173 (223)
.|++++|++|..
T Consensus 438 ~GI~eLle~I~~ 449 (787)
T PRK05306 438 EGIDELLEAILL 449 (787)
T ss_pred CCchHHHHhhhh
Confidence 999999999875
No 182
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.4e-21 Score=137.71 Aligned_cols=163 Identities=29% Similarity=0.529 Sum_probs=143.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEE
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 91 (223)
...++++++|+.|.||||++.+..-+.+...+.+++|.......+..+...+++..|||+|++.+......++-+..+.|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 45899999999999999999999999999999999999999988877766799999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027438 92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
++||++..-++.++..|...+.+.+. ++|+|+.|||.|.... . .....-.+....++.++++||+++-|+..-|-++
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r-~-~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L 164 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKAR-K-VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL 164 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceecccc-c-cccccceeeecccceeEEeecccccccccchHHH
Confidence 99999999999999999999887776 5999999999997652 2 2233344556778899999999999999999999
Q ss_pred HHHHHH
Q 027438 172 VTEIYN 177 (223)
Q Consensus 172 ~~~~~~ 177 (223)
++++..
T Consensus 165 arKl~G 170 (216)
T KOG0096|consen 165 ARKLTG 170 (216)
T ss_pred hhhhcC
Confidence 887643
No 183
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.84 E-value=9.2e-20 Score=157.58 Aligned_cols=158 Identities=22% Similarity=0.258 Sum_probs=113.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCC--CCC-----CC------CCcceeeeEEEEEEE-----CCEEEEEEEEeCCCc
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDE--FYP-----NS------KSTIGVEFQTQKMDI-----NGKEVKAQIWDTAGQ 73 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~--~~~-----~~------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~G~ 73 (223)
+...+|+|+|+.++|||||+++|+... +.. .. ....|.+.....+.+ ++..+.+.||||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 456799999999999999999998631 110 00 011133332222222 456789999999999
Q ss_pred chhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-
Q 027438 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF- 152 (223)
Q Consensus 74 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~- 152 (223)
.++...+..+++.+|++|+|+|+++....+....|..... .+.|+++|+||+|+..... .....++....++.
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~~ 158 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGIDA 158 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCCc
Confidence 9999889999999999999999998766666666654332 2689999999999864321 22233444445554
Q ss_pred --EEEeccCCCCCHHHHHHHHHHHH
Q 027438 153 --FMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 153 --~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
++.+||++|.|+++++++|.+.+
T Consensus 159 ~~vi~iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 159 SDAVLVSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHhC
Confidence 89999999999999999998765
No 184
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.84 E-value=1.8e-20 Score=140.62 Aligned_cols=159 Identities=22% Similarity=0.220 Sum_probs=106.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCCCCCC------------------CCcceeeeEEEEEEECCEEEEEEEEeCCCcc
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNS------------------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 74 (223)
..++|+++|+.++|||||+++|++....... ....+................++++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4689999999999999999999864321110 0111122222222212455778899999999
Q ss_pred hhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHH-HHHHHc---
Q 027438 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE-VTTAEGK-ALAEAQ--- 149 (223)
Q Consensus 75 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~-~~~~~~--- 149 (223)
.+.......+..+|++|+|+|+.+.-.... ...+..+... +.|+++++||+|+...+. ...++.. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeeccccccccc-cccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 998888888999999999999987543322 2222233222 688999999999983211 0111122 333323
Q ss_pred ---CCeEEEeccCCCCCHHHHHHHHHHHH
Q 027438 150 ---GLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 150 ---~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
.++++++||.+|.|++++++.|.+.+
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 35799999999999999999998754
No 185
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.84 E-value=6.7e-20 Score=158.32 Aligned_cols=146 Identities=20% Similarity=0.220 Sum_probs=107.8
Q ss_pred cCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcc------hHhhh--cCCcEEEE
Q 027438 21 GDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV------TSAYY--RGAVGALL 92 (223)
Q Consensus 21 G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~------~~~~~--~~~d~vi~ 92 (223)
|++|+|||||+|+|++........+..+.+.....+.+++ ..+.+|||||+.++... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998776444455555555555555555 45789999998776543 23333 47999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 027438 93 VYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
|+|.++.+. ...+..++. ..+.|+++|+||+|+.+...+. .+.+.+++..+++++++||++|.|++++++.+.
T Consensus 79 VvDat~ler---~l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchh---hHHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999987432 122333332 2369999999999987544443 346778888999999999999999999999998
Q ss_pred HHH
Q 027438 173 TEI 175 (223)
Q Consensus 173 ~~~ 175 (223)
+.+
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 753
No 186
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=1.5e-19 Score=152.29 Aligned_cols=146 Identities=23% Similarity=0.188 Sum_probs=103.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCcch--------hhcchHhhhc
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER--------FRAVTSAYYR 85 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~~ 85 (223)
++|+|+|.+|||||||+++|.+..... ...+..+.+.......+++ ..+.+|||||... .......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 589999999999999999999876421 2223333344444455555 6788999999876 2233455678
Q ss_pred CCcEEEEEEECCCHhhHH--HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEeccCCCC
Q 027438 86 GAVGALLVYDISRRQTFD--SIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-FMETSALDSS 162 (223)
Q Consensus 86 ~~d~vi~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 162 (223)
.+|++|+|+|..++.+.. .+..|+... +.|+++|+||+|..+. .+...++ ...++. ++++||++|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~------~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRKS------NKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 999999999998854332 334454432 6899999999996541 1222333 345664 8999999999
Q ss_pred CHHHHHHHHHH
Q 027438 163 NVTAAFQTVVT 173 (223)
Q Consensus 163 ~i~~~~~~l~~ 173 (223)
|++++++.+..
T Consensus 149 gv~~l~~~I~~ 159 (435)
T PRK00093 149 GIGDLLDAILE 159 (435)
T ss_pred CHHHHHHHHHh
Confidence 99999999986
No 187
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.84 E-value=1e-19 Score=131.92 Aligned_cols=151 Identities=21% Similarity=0.167 Sum_probs=102.6
Q ss_pred EEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhc-------chHhhhcCCcEE
Q 027438 19 LIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA-------VTSAYYRGAVGA 90 (223)
Q Consensus 19 v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~~~~d~v 90 (223)
|+|++|+|||||++++.+.... ................... ....+.+||+||...... ....++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999986554 2222222222222222222 145788999999765443 334477899999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHH---HHHHHHHHcCCeEEEeccCCCCCHHHH
Q 027438 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTA---EGKALAEAQGLFFMETSALDSSNVTAA 167 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 167 (223)
++++|..++....... |..... ..+.|+++|+||+|+......... .........+++++++|++++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999987665554 333332 236899999999998764332221 122333445678999999999999999
Q ss_pred HHHHHHH
Q 027438 168 FQTVVTE 174 (223)
Q Consensus 168 ~~~l~~~ 174 (223)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998764
No 188
>COG1159 Era GTPase [General function prediction only]
Probab=99.84 E-value=1.1e-19 Score=140.47 Aligned_cols=158 Identities=20% Similarity=0.132 Sum_probs=107.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhc--------chHhhh
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA--------VTSAYY 84 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~ 84 (223)
..--|+|+|.|+||||||+|++++.+....+....++......+... ...++.++||||...... .....+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 44578999999999999999999998876555443332223333233 367899999999554322 223456
Q ss_pred cCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEeccCCCCC
Q 027438 85 RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSSN 163 (223)
Q Consensus 85 ~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 163 (223)
..+|+++||+|.+.+..-. -...++.+.. .+.|+++++||+|..............+...... .++++||++|.|
T Consensus 84 ~dvDlilfvvd~~~~~~~~-d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n 159 (298)
T COG1159 84 KDVDLILFVVDADEGWGPG-DEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDN 159 (298)
T ss_pred ccCcEEEEEEeccccCCcc-HHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCC
Confidence 8899999999999854321 1222333333 3689999999999886544223333333333333 499999999999
Q ss_pred HHHHHHHHHHHH
Q 027438 164 VTAAFQTVVTEI 175 (223)
Q Consensus 164 i~~~~~~l~~~~ 175 (223)
++.+.+.+...+
T Consensus 160 ~~~L~~~i~~~L 171 (298)
T COG1159 160 VDTLLEIIKEYL 171 (298)
T ss_pred HHHHHHHHHHhC
Confidence 999999987665
No 189
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.83 E-value=8.9e-20 Score=153.44 Aligned_cols=147 Identities=22% Similarity=0.253 Sum_probs=102.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCc--------chhhcchHhhhcC
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ--------ERFRAVTSAYYRG 86 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--------~~~~~~~~~~~~~ 86 (223)
+|+|+|.+|||||||+|+|++..... ...+..+.+.........+ ..+.+|||||. ..+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 58999999999999999999876422 1222222333334444444 45889999996 3344455667889
Q ss_pred CcEEEEEEECCCHhhHHH--HHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEeccCCCCC
Q 027438 87 AVGALLVYDISRRQTFDS--IGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDSSN 163 (223)
Q Consensus 87 ~d~vi~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 163 (223)
+|++++|+|..++.+... +..|+.. .++|+++|+||+|+...... ..+ ...++. +++++||++|.|
T Consensus 79 ad~vl~vvD~~~~~~~~d~~i~~~l~~------~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~g 147 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDEEIAKWLRK------SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRG 147 (429)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHH------hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCC
Confidence 999999999987544322 3344432 26899999999998753321 122 245566 599999999999
Q ss_pred HHHHHHHHHHHH
Q 027438 164 VTAAFQTVVTEI 175 (223)
Q Consensus 164 i~~~~~~l~~~~ 175 (223)
++++++.+...+
T Consensus 148 v~~ll~~i~~~l 159 (429)
T TIGR03594 148 IGDLLDAILELL 159 (429)
T ss_pred hHHHHHHHHHhc
Confidence 999999988766
No 190
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.82 E-value=5.5e-19 Score=156.08 Aligned_cols=153 Identities=15% Similarity=0.167 Sum_probs=113.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcc----------hHhh
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV----------TSAY 83 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~----------~~~~ 83 (223)
.++|+++|++|||||||+|+|++........ .|++...+...+......+.+|||||..++... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~--pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNW--AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 4789999999999999999999875533222 355555555555556678889999997765321 1123
Q ss_pred h--cCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCC
Q 027438 84 Y--RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDS 161 (223)
Q Consensus 84 ~--~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (223)
+ ..+|++++|+|.++.+.. ..|..++.+ .+.|+++++||+|+.+.+.+ ....+.+.+.++++++++|+.++
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence 2 479999999999985432 234344433 26999999999998754444 34567788889999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027438 162 SNVTAAFQTVVTEI 175 (223)
Q Consensus 162 ~~i~~~~~~l~~~~ 175 (223)
+|++++++.+.+..
T Consensus 154 ~GIdeL~~~I~~~~ 167 (772)
T PRK09554 154 RGIEALKLAIDRHQ 167 (772)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999987653
No 191
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.82 E-value=5.8e-19 Score=151.65 Aligned_cols=155 Identities=19% Similarity=0.153 Sum_probs=103.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCC----CcceeeeEEEEEE------------ECCEEEEEEEEeCCCcchhh
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSK----STIGVEFQTQKMD------------INGKEVKAQIWDTAGQERFR 77 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~l~D~~G~~~~~ 77 (223)
..-|+++|++++|||||+++|.+..+..... ++.+......... ++.....+.+|||||++.+.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 3569999999999999999999876643322 2222222211110 00011238899999999999
Q ss_pred cchHhhhcCCcEEEEEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc------------cCHHH-
Q 027438 78 AVTSAYYRGAVGALLVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE------------VTTAE- 141 (223)
Q Consensus 78 ~~~~~~~~~~d~vi~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~------------~~~~~- 141 (223)
.++...++.+|++++|+|+++ +.+++.+..+ .. .+.|+++++||+|+.+... ...+.
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v 156 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV 156 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence 999999999999999999997 5555554322 11 2689999999999864210 00000
Q ss_pred -----------HHHHHH------------H--cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027438 142 -----------GKALAE------------A--QGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 142 -----------~~~~~~------------~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
..++.. . ..++++++||++|+|+++++++|....
T Consensus 157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 011111 1 135799999999999999999886544
No 192
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.82 E-value=1.6e-18 Score=133.96 Aligned_cols=151 Identities=22% Similarity=0.198 Sum_probs=102.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhh-------cchHhhhcCCc
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR-------AVTSAYYRGAV 88 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~d 88 (223)
+|+|+|++|+|||||+++|++........+..+.+.....+.+.+ ..+++||+||..... ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998754333233333344444455554 578899999964322 22345679999
Q ss_pred EEEEEEECCCHh-hHHHHHHHHHHHhhc----------------------------------------------------
Q 027438 89 GALLVYDISRRQ-TFDSIGRWLNELHTH---------------------------------------------------- 115 (223)
Q Consensus 89 ~vi~v~d~~~~~-s~~~~~~~~~~i~~~---------------------------------------------------- 115 (223)
++++|+|++++. ..+.+...+....-.
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998865 343333333211100
Q ss_pred -------------CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027438 116 -------------SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 116 -------------~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
...-.|+++|+||+|+.. .++...++.. .+++++||+++.|++++|+.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 001268999999999864 3344444443 4589999999999999999988654
No 193
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.82 E-value=5.3e-19 Score=156.41 Aligned_cols=155 Identities=21% Similarity=0.153 Sum_probs=104.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcch--------hhcchHhh
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER--------FRAVTSAY 83 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~ 83 (223)
....+|+|+|.++||||||+|+|++...... ....|++..............+.+|||||... +......+
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv-~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVV-EDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 4457899999999999999999998654221 22234444443333322235678999999653 23344556
Q ss_pred hcCCcEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEeccCCC
Q 027438 84 YRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMETSALDS 161 (223)
Q Consensus 84 ~~~~d~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 161 (223)
++.+|++|+|+|.++..+ .. ..|...+.. .+.|+++|+||+|+.... ....++. ..+. ..+++||++|
T Consensus 352 ~~~aD~iL~VvDa~~~~~--~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~-~lg~~~~~~iSA~~g 421 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLT--STDERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFW-KLGLGEPYPISAMHG 421 (712)
T ss_pred HHhCCEEEEEEECCCCCC--HHHHHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHH-HcCCCCeEEEECCCC
Confidence 789999999999987422 22 234444433 378999999999986421 1222221 2333 2678999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 027438 162 SNVTAAFQTVVTEIYN 177 (223)
Q Consensus 162 ~~i~~~~~~l~~~~~~ 177 (223)
.|+++++++|++.+.+
T Consensus 422 ~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 422 RGVGDLLDEALDSLKV 437 (712)
T ss_pred CCchHHHHHHHHhccc
Confidence 9999999999887643
No 194
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.82 E-value=4.4e-22 Score=142.39 Aligned_cols=167 Identities=33% Similarity=0.612 Sum_probs=139.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECC-EEEEEEEEeCCCcchhhcchHhhhcCCcE
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING-KEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
.+..++++|+|.-|+|||+++.+++...+...+..++|+++..+....+. ..++++|||+.|++++..+..-+++.+.+
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 46789999999999999999999999888888888888877655544443 45678999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhc----CCCCCcEEEEEeCCCCCCCcccC-HHHHHHHHHHcCCe-EEEeccCCCCC
Q 027438 90 ALLVYDISRRQTFDSIGRWLNELHTH----SDMNVVTILVGNKSDLKDAREVT-TAEGKALAEAQGLF-FMETSALDSSN 163 (223)
Q Consensus 90 vi~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~D~~~~~~~~-~~~~~~~~~~~~~~-~~~~Sa~~~~~ 163 (223)
.++|||+++..+|+.+..|.+.+... .....|+|+..||||........ ......+++.++.. ++++|+|.+.+
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn 181 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN 181 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence 99999999999999999999997543 23457889999999986532222 35566778888876 99999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027438 164 VTAAFQTVVTEIYN 177 (223)
Q Consensus 164 i~~~~~~l~~~~~~ 177 (223)
+.++-..|+++++-
T Consensus 182 i~Ea~r~lVe~~lv 195 (229)
T KOG4423|consen 182 IPEAQRELVEKILV 195 (229)
T ss_pred hhHHHHHHHHHHHh
Confidence 99999999887743
No 195
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.81 E-value=2.8e-19 Score=150.01 Aligned_cols=159 Identities=19% Similarity=0.144 Sum_probs=106.5
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHHcC--CCCCC---------------------------CCCcceeeeEEEEEEECC
Q 027438 10 AEDYLFKVVLIGDSAVGKSNLLARFARD--EFYPN---------------------------SKSTIGVEFQTQKMDING 60 (223)
Q Consensus 10 ~~~~~~~v~v~G~~~~GKSsli~~l~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~ 60 (223)
.....++|+++|++++|||||+++|+.. ..... .....|.+.......+..
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~ 82 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET 82 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc
Confidence 3566799999999999999999999852 11100 001113344444445555
Q ss_pred EEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHH-HHHHHhhcCCCCCcEEEEEeCCCCCCCcc---
Q 027438 61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGR-WLNELHTHSDMNVVTILVGNKSDLKDARE--- 136 (223)
Q Consensus 61 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~D~~~~~~--- 136 (223)
..+.+.||||||++.+.......+..+|++|+|+|++++.++..... +...+..... ..|+++++||+|+.+..+
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-INQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-CCeEEEEEEChhccCccHHHH
Confidence 56789999999999887777777889999999999998754321111 1111222222 357899999999964221
Q ss_pred -cCHHHHHHHHHHcC-----CeEEEeccCCCCCHHHHHH
Q 027438 137 -VTTAEGKALAEAQG-----LFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 137 -~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 169 (223)
...++...+++..+ ++++++||++|.|+.+.+.
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 12345556666655 5699999999999987554
No 196
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.81 E-value=5.7e-19 Score=124.06 Aligned_cols=134 Identities=24% Similarity=0.304 Sum_probs=99.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC----cchhhcchHhhhcCCcEEE
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG----QERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----~~~~~~~~~~~~~~~d~vi 91 (223)
||+++|+.|+|||||+++|.+... .+..|..+.+ .+ .++|||| +..+..........+|+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~-------~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEY-------YD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEe-------cc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999998654 3333322211 11 1589999 4445555556667999999
Q ss_pred EEEECCCHhh-HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEeccCCCCCHHHHHH
Q 027438 92 LVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169 (223)
Q Consensus 92 ~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~ 169 (223)
++.|.+++.+ |.. .+.... .+|+|-|+||+|+.. +....+.++++.+..|+. +|++|+.+|+|++++.+
T Consensus 69 ll~dat~~~~~~pP------~fa~~f--~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 69 LLQDATEPRSVFPP------GFASMF--NKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD 139 (143)
T ss_pred EEecCCCCCccCCc------hhhccc--CCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence 9999998654 221 122222 589999999999984 234677788888888887 89999999999999998
Q ss_pred HHH
Q 027438 170 TVV 172 (223)
Q Consensus 170 ~l~ 172 (223)
+|-
T Consensus 140 ~L~ 142 (143)
T PF10662_consen 140 YLE 142 (143)
T ss_pred HHh
Confidence 873
No 197
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.81 E-value=2.4e-19 Score=150.40 Aligned_cols=157 Identities=20% Similarity=0.161 Sum_probs=104.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCC-----------------------------CCcceeeeEEEEEEECCE
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNS-----------------------------KSTIGVEFQTQKMDINGK 61 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 61 (223)
..+.++|+++|++++|||||+++|++..-.... ....|.+.......+...
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 456799999999999999999999843211000 011244455555555556
Q ss_pred EEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc----
Q 027438 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDARE---- 136 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~D~~~~~~---- 136 (223)
.+.+.+|||||++.+.......+..+|++|+|+|++++.++... ..++..+... . ..|+++++||+|+.+..+
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~-~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-G-INQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-C-CCeEEEEEEccccccccHHHHH
Confidence 67899999999988876666667899999999999873222221 1222222222 1 246899999999875221
Q ss_pred cCHHHHHHHHHHcC-----CeEEEeccCCCCCHHHHHH
Q 027438 137 VTTAEGKALAEAQG-----LFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 137 ~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 169 (223)
...++...+....+ ++++++||++|.|+++..+
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 12234555555554 4699999999999997654
No 198
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.7e-18 Score=118.51 Aligned_cols=156 Identities=22% Similarity=0.423 Sum_probs=125.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEE
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 92 (223)
.+++|+.+|-.++||||++..|.-... ....+|+|.+.....+ ..+.+.+||.+|++..+..|.+|+....++||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 478999999999999999999997554 5566777776665554 56788999999999999999999999999999
Q ss_pred EEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-----CCeEEEeccCCCCCHHH
Q 027438 93 VYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ-----GLFFMETSALDSSNVTA 166 (223)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~ 166 (223)
|+|..+....++.+..+..+... .-...|+++.+||-|+..+ ...+++.++..-. ...+.++++.+|.|+.+
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A--~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA--MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc--cCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence 99999998888887776665444 2335788888999999865 4566666654322 33478899999999999
Q ss_pred HHHHHHHHH
Q 027438 167 AFQTVVTEI 175 (223)
Q Consensus 167 ~~~~l~~~~ 175 (223)
-|.+|...+
T Consensus 169 glswlsnn~ 177 (180)
T KOG0071|consen 169 GLSWLSNNL 177 (180)
T ss_pred HHHHHHhhc
Confidence 999987644
No 199
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.81 E-value=7e-19 Score=133.43 Aligned_cols=117 Identities=21% Similarity=0.357 Sum_probs=87.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCC-cEEEEEE
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGA-VGALLVY 94 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~-d~vi~v~ 94 (223)
+|+++|++|||||||+++|..+.+......+ ............+....+.+||+||+..+...+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999988765543322 2222222221123456789999999999988888889998 9999999
Q ss_pred ECCCH-hhHHHHHHHHHHHhh---cCCCCCcEEEEEeCCCCCC
Q 027438 95 DISRR-QTFDSIGRWLNELHT---HSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 95 d~~~~-~s~~~~~~~~~~i~~---~~~~~~piilv~nK~D~~~ 133 (223)
|..+. .++..+..|+..+.. ....+.|+++++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99997 677777666655432 1234799999999999864
No 200
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.81 E-value=8.1e-19 Score=143.08 Aligned_cols=155 Identities=25% Similarity=0.158 Sum_probs=113.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchH--------hh
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTS--------AY 83 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~--------~~ 83 (223)
..-++|+|+|.|++|||||+|+|.+.......+-. |++.+.....++-.++.+.+.||+|..+.....+ ..
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~-GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIA-GTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCC-CCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 34589999999999999999999998776555544 5666666555555557888999999765444332 34
Q ss_pred hcCCcEEEEEEECCCHhh-HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCC
Q 027438 84 YRGAVGALLVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSS 162 (223)
Q Consensus 84 ~~~~d~vi~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (223)
+..||.+++|+|.+.+.+ .+....+ ....+.|+++|.||.|+......... ....+.+++.+|+++|+
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~~~~------~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~ 362 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLALIE------LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGE 362 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHHHHH------hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCcc
Confidence 578999999999999632 2221122 33447999999999999875432111 22234468999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 027438 163 NVTAAFQTVVTEIYNI 178 (223)
Q Consensus 163 ~i~~~~~~l~~~~~~~ 178 (223)
|++.+.+.|.+.+...
T Consensus 363 Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 363 GLDALREAIKQLFGKG 378 (454)
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999999998877666
No 201
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.80 E-value=1.8e-18 Score=126.85 Aligned_cols=150 Identities=20% Similarity=0.234 Sum_probs=98.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcch----------hhcchHhhhc
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER----------FRAVTSAYYR 85 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~~~~~ 85 (223)
.|+++|++|+|||||++.+.+....+...++.+.+........++ .+.+|||||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999996555444444545544444444443 778999999432 3333344443
Q ss_pred ---CCcEEEEEEECCCHhh--HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHH--HcCCeEEEe
Q 027438 86 ---GAVGALLVYDISRRQT--FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT--TAEGKALAE--AQGLFFMET 156 (223)
Q Consensus 86 ---~~d~vi~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~~~--~~~~~~~~~ 156 (223)
..+++++++|..+..+ ...+..|+... +.|+++|+||+|+....+.. ......... ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 4678899999987532 23334554432 48999999999986432211 111222222 334569999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 027438 157 SALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 157 Sa~~~~~i~~~~~~l~~~ 174 (223)
|++++.|+.+++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999998764
No 202
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.8e-19 Score=127.74 Aligned_cols=162 Identities=22% Similarity=0.350 Sum_probs=121.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCC------C-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhh
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEF------Y-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAY 83 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~ 83 (223)
....+.|+|+|..++|||||+.++..... . ..-.++.|.+..... +. ...+.+||..|++..+++|..+
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~--v~--~~~l~fwdlgGQe~lrSlw~~y 89 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIE--VC--NAPLSFWDLGGQESLRSLWKKY 89 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeeccee--ec--cceeEEEEcCChHHHHHHHHHH
Confidence 34458899999999999999998765311 1 122244444443333 33 4578899999999999999999
Q ss_pred hcCCcEEEEEEECCCHhhHHHHHHHHHHH-hhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH------HcCCeEEEe
Q 027438 84 YRGAVGALLVYDISRRQTFDSIGRWLNEL-HTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAE------AQGLFFMET 156 (223)
Q Consensus 84 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~ 156 (223)
|..++++|+++|.++++.|+.....++.+ ....-.+.|+++.+||-|+... ...++...... ...+++.++
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~~~~pv 167 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDNPFQPV 167 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccCccccc
Confidence 99999999999999999998886665554 3334558999999999998853 33344433322 224569999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHH
Q 027438 157 SALDSSNVTAAFQTVVTEIYNI 178 (223)
Q Consensus 157 Sa~~~~~i~~~~~~l~~~~~~~ 178 (223)
||.+|+||++..+|+...+.++
T Consensus 168 Sal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 168 SALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhcccHHHHHHHHHHHHhhc
Confidence 9999999999999999888666
No 203
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=4.6e-19 Score=144.12 Aligned_cols=149 Identities=22% Similarity=0.134 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhh---------cchHhhhc
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR---------AVTSAYYR 85 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~~~~~~~ 85 (223)
..|+|+|.|+||||||+|+|++.......+.+ |++.+............+.++||+|.+... ......+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~p-GvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTP-GVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCC-CCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 57999999999999999999998776544433 555544443333334558899999966422 23345678
Q ss_pred CCcEEEEEEECCCHhhH--HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEeccCCCC
Q 027438 86 GAVGALLVYDISRRQTF--DSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-FMETSALDSS 162 (223)
Q Consensus 86 ~~d~vi~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 162 (223)
.||++|||+|....-+- +.+.+|+. ..++|+++|+||+|-... .+.+.+ ...+|.. ++.+||.+|.
T Consensus 83 eADvilfvVD~~~Git~~D~~ia~~Lr------~~~kpviLvvNK~D~~~~----e~~~~e-fyslG~g~~~~ISA~Hg~ 151 (444)
T COG1160 83 EADVILFVVDGREGITPADEEIAKILR------RSKKPVILVVNKIDNLKA----EELAYE-FYSLGFGEPVPISAEHGR 151 (444)
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHH------hcCCCEEEEEEcccCchh----hhhHHH-HHhcCCCCceEeehhhcc
Confidence 99999999999874331 22233333 226999999999996521 222233 3455665 9999999999
Q ss_pred CHHHHHHHHHHHH
Q 027438 163 NVTAAFQTVVTEI 175 (223)
Q Consensus 163 ~i~~~~~~l~~~~ 175 (223)
|+.+++++++..+
T Consensus 152 Gi~dLld~v~~~l 164 (444)
T COG1160 152 GIGDLLDAVLELL 164 (444)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999998765
No 204
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.80 E-value=7.8e-19 Score=133.77 Aligned_cols=149 Identities=25% Similarity=0.210 Sum_probs=95.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCC------------------------C-----CcceeeeEEEEEEECCEEEEEE
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNS------------------------K-----STIGVEFQTQKMDINGKEVKAQ 66 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~------------------------~-----~~~~~~~~~~~~~~~~~~~~~~ 66 (223)
||+|+|++++|||||+++|++..-.... + ...|.+.......+......+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999999753211110 0 0012333333333434456788
Q ss_pred EEeCCCcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc----CHHHH
Q 027438 67 IWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV----TTAEG 142 (223)
Q Consensus 67 l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~----~~~~~ 142 (223)
+|||||+..+...+...++.+|++|+|+|++++..-... .....+... . ..++|+|+||+|+...... ...+.
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~~~~~~~-~-~~~iIvviNK~D~~~~~~~~~~~i~~~~ 157 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHSYILSLL-G-IRHVVVAVNKMDLVDYSEEVFEEIVADY 157 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHHHHHHHc-C-CCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence 999999988776666778999999999999875322211 111222221 1 2457889999998743211 12344
Q ss_pred HHHHHHcCC---eEEEeccCCCCCHHHH
Q 027438 143 KALAEAQGL---FFMETSALDSSNVTAA 167 (223)
Q Consensus 143 ~~~~~~~~~---~~~~~Sa~~~~~i~~~ 167 (223)
..+....+. +++++||++|.|+.+.
T Consensus 158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 158 LAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 455555553 4899999999999754
No 205
>PRK10218 GTP-binding protein; Provisional
Probab=99.80 E-value=4.4e-18 Score=146.69 Aligned_cols=159 Identities=19% Similarity=0.226 Sum_probs=112.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHc--CCCCCCC------------CCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhc
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFAR--DEFYPNS------------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA 78 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 78 (223)
...+|+|+|+.++|||||+++|+. +.+.... ....+.++......+....+.+.+|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 457999999999999999999996 3332211 12345666666666666678999999999999999
Q ss_pred chHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHH-------HcC
Q 027438 79 VTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE-VTTAEGKALAE-------AQG 150 (223)
Q Consensus 79 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~-------~~~ 150 (223)
.+..+++.+|++|+|+|+.+...... ..++..+.. .+.|+++++||+|+...+. ...++..++.. ...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 99999999999999999987533222 222333322 2688999999999875432 12233444332 234
Q ss_pred CeEEEeccCCCC----------CHHHHHHHHHHHH
Q 027438 151 LFFMETSALDSS----------NVTAAFQTVVTEI 175 (223)
Q Consensus 151 ~~~~~~Sa~~~~----------~i~~~~~~l~~~~ 175 (223)
++++.+||.+|. |+..+++.|+..+
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 679999999998 5777777666544
No 206
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.79 E-value=1.1e-17 Score=120.16 Aligned_cols=158 Identities=22% Similarity=0.357 Sum_probs=119.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCC--------CCCC--cceeeeEEEEEEECCEEEEEEEEeCCCcchhhcch
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYP--------NSKS--TIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVT 80 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~--------~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 80 (223)
.....+|+|.|+.++||||+++++....... .... ++++........+. ....++|++||||+++.-+|
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~-~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD-EDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc-CcceEEEecCCCcHHHHHHH
Confidence 3456899999999999999999998765311 1111 12233333333333 23567899999999999999
Q ss_pred HhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc--CCeEEEecc
Q 027438 81 SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ--GLFFMETSA 158 (223)
Q Consensus 81 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa 158 (223)
....+++.++|+++|.+.+..+ .....+..+..... +|++++.||.|+... .+.+.++++.+.. ..++++.+|
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~a--~ppe~i~e~l~~~~~~~~vi~~~a 160 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFDA--LPPEKIREALKLELLSVPVIEIDA 160 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCCC--CCHHHHHHHHHhccCCCceeeeec
Confidence 9999999999999999999888 44555555544432 999999999999864 4566666666655 788999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 027438 159 LDSSNVTAAFQTVVTE 174 (223)
Q Consensus 159 ~~~~~i~~~~~~l~~~ 174 (223)
.++++..+.++.+...
T Consensus 161 ~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 161 TEGEGARDQLDVLLLK 176 (187)
T ss_pred ccchhHHHHHHHHHhh
Confidence 9999999999888654
No 207
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.79 E-value=1.6e-18 Score=149.42 Aligned_cols=157 Identities=21% Similarity=0.232 Sum_probs=110.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC--CCCCCC------------CCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcch
Q 027438 15 FKVVLIGDSAVGKSNLLARFARD--EFYPNS------------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVT 80 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 80 (223)
.+|+|+|+.++|||||+++|+.. .+.... ....|.+.......+....+.+.||||||+.+|....
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 48999999999999999999862 221110 0112344444444444456788999999999999899
Q ss_pred HhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHH-------HcCCe
Q 027438 81 SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV-TTAEGKALAE-------AQGLF 152 (223)
Q Consensus 81 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~ 152 (223)
..+++.+|++++|+|+.+.. ......|+..+... ++|+++|+||+|+...+.. ..++..++.. ...++
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 99999999999999998742 33345555555443 6899999999998653321 1233333332 23567
Q ss_pred EEEeccCCCC----------CHHHHHHHHHHHH
Q 027438 153 FMETSALDSS----------NVTAAFQTVVTEI 175 (223)
Q Consensus 153 ~~~~Sa~~~~----------~i~~~~~~l~~~~ 175 (223)
++.+||++|. |+..+|+.|+..+
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 9999999996 7888988887654
No 208
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.79 E-value=3.7e-18 Score=131.73 Aligned_cols=164 Identities=21% Similarity=0.227 Sum_probs=109.1
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcch-----------
Q 027438 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER----------- 75 (223)
Q Consensus 7 ~~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------- 75 (223)
++.+..+.++|+|+|.|++|||||.|.+++.+..+......++.....-+... ...++.|+||||.-.
T Consensus 65 de~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~ 143 (379)
T KOG1423|consen 65 DEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMM 143 (379)
T ss_pred CchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHH
Confidence 34456778999999999999999999999999888777765544444444333 456889999999221
Q ss_pred -hhcchHhhhcCCcEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCCc-------------ccC--
Q 027438 76 -FRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDAR-------------EVT-- 138 (223)
Q Consensus 76 -~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~D~~~~~-------------~~~-- 138 (223)
........+.+||++++++|+++... .+ ...+..+..+. ..|-|+|+||.|..... ++.
T Consensus 144 s~lq~~~~a~q~AD~vvVv~Das~tr~--~l~p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~ 219 (379)
T KOG1423|consen 144 SVLQNPRDAAQNADCVVVVVDASATRT--PLHPRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKL 219 (379)
T ss_pred HhhhCHHHHHhhCCEEEEEEeccCCcC--ccChHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchh
Confidence 11122344578999999999996221 11 12233333333 58899999999975421 111
Q ss_pred -HHHHHHHHHHc---------CC----eEEEeccCCCCCHHHHHHHHHHHH
Q 027438 139 -TAEGKALAEAQ---------GL----FFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 139 -~~~~~~~~~~~---------~~----~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
.+-...+.... ++ .+|.+||++|+|++++.++|...+
T Consensus 220 kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 220 KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 11122222211 22 289999999999999999987644
No 209
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.79 E-value=9.5e-18 Score=144.65 Aligned_cols=156 Identities=19% Similarity=0.135 Sum_probs=102.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCC----CcceeeeEEEEEEE--CCEEE----------EEEEEeCCCcchh
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSK----STIGVEFQTQKMDI--NGKEV----------KAQIWDTAGQERF 76 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~----------~~~l~D~~G~~~~ 76 (223)
....|+++|++++|||||+++|.+........ ++.|.++....... .+..+ .+.+|||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 44679999999999999999998765432222 12232222111100 01111 2689999999999
Q ss_pred hcchHhhhcCCcEEEEEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc----cCH--------HH
Q 027438 77 RAVTSAYYRGAVGALLVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE----VTT--------AE 141 (223)
Q Consensus 77 ~~~~~~~~~~~d~vi~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~----~~~--------~~ 141 (223)
..++...+..+|++|+|+|+++ +.+++.+..+ .. .+.|+++++||+|+..... ... ..
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINIL----KR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----HH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 9988888899999999999997 6666655322 11 2689999999999852100 000 00
Q ss_pred -----------HHHHHHH---------------cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027438 142 -----------GKALAEA---------------QGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 142 -----------~~~~~~~---------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
....... ..++++++||.+|.|++++++.+...+
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 0001111 135689999999999999998876443
No 210
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.79 E-value=8.2e-18 Score=126.50 Aligned_cols=148 Identities=18% Similarity=0.147 Sum_probs=98.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCC------CC--------CCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcc
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYP------NS--------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV 79 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 79 (223)
.++|+++|++++|||||+++|++..... .+ ....|.+.......+......+.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 4899999999999999999998631000 00 012244444455555555667889999999988887
Q ss_pred hHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHc-----C
Q 027438 80 TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDAREV---TTAEGKALAEAQ-----G 150 (223)
Q Consensus 80 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~D~~~~~~~---~~~~~~~~~~~~-----~ 150 (223)
....+..+|++++|+|+.....-.. ...+..+... +.| +|+++||+|+....+. ..+++..+.... +
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQT-REHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 7888899999999999987432221 2223333322 455 7788999998642221 123344444443 3
Q ss_pred CeEEEeccCCCCCHH
Q 027438 151 LFFMETSALDSSNVT 165 (223)
Q Consensus 151 ~~~~~~Sa~~~~~i~ 165 (223)
++++++||.+|.|+.
T Consensus 158 v~iipiSa~~g~n~~ 172 (195)
T cd01884 158 TPIVRGSALKALEGD 172 (195)
T ss_pred CeEEEeeCccccCCC
Confidence 679999999998863
No 211
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.79 E-value=2.8e-18 Score=142.83 Aligned_cols=162 Identities=19% Similarity=0.166 Sum_probs=104.2
Q ss_pred cccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCC---CCcceeeeEE--EEEE----------------EC--C----
Q 027438 8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNS---KSTIGVEFQT--QKMD----------------IN--G---- 60 (223)
Q Consensus 8 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~---~~~~~~~~~~--~~~~----------------~~--~---- 60 (223)
-+.+++.++|+++|+.++|||||+.+|.+....... ....+..... ..+. ++ +
T Consensus 3 ~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (411)
T PRK04000 3 WEKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETE 82 (411)
T ss_pred cccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccc
Confidence 356677899999999999999999999763221111 1111111110 0000 00 0
Q ss_pred EEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHh----hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027438 61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ----TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE 136 (223)
Q Consensus 61 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~----s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~ 136 (223)
....+.||||||+..+..........+|++++|+|++++. +.+.+.. +... . ..|+++|+||+|+.+..+
T Consensus 83 ~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~----l~~~-~-i~~iiVVlNK~Dl~~~~~ 156 (411)
T PRK04000 83 LLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMA----LDII-G-IKNIVIVQNKIDLVSKER 156 (411)
T ss_pred cccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc-C-CCcEEEEEEeeccccchh
Confidence 1357899999999988776666667789999999999643 3333222 2111 1 246899999999875332
Q ss_pred c--CHHHHHHHHHHc---CCeEEEeccCCCCCHHHHHHHHHHHH
Q 027438 137 V--TTAEGKALAEAQ---GLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 137 ~--~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
. ..++...+.... +.+++++||++|.|++++++.|...+
T Consensus 157 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 157 ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 1 123344444332 57899999999999999999987644
No 212
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.79 E-value=8.2e-18 Score=145.77 Aligned_cols=152 Identities=18% Similarity=0.159 Sum_probs=103.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC---CCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEE
Q 027438 16 KVVLIGDSAVGKSNLLARFARDE---FYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALL 92 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 92 (223)
-|.++|+.++|||||+++|++.. +.......++.+.....+... ....+.+|||||++.|...+...+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~-~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP-DGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC-CCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 58899999999999999999743 222222233333332223222 22357899999999998878888899999999
Q ss_pred EEECCC---HhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCccc--CHHHHHHHHHHcC---CeEEEeccCCCCC
Q 027438 93 VYDISR---RQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDAREV--TTAEGKALAEAQG---LFFMETSALDSSN 163 (223)
Q Consensus 93 v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~Sa~~~~~ 163 (223)
|+|+++ +.+.+.+. .+... +.| +++|+||+|+.+...+ ..++..++....+ .+++++||++|.|
T Consensus 81 VVda~eg~~~qT~ehl~----il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g 153 (614)
T PRK10512 81 VVACDDGVMAQTREHLA----ILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG 153 (614)
T ss_pred EEECCCCCcHHHHHHHH----HHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence 999987 33433332 22211 344 5789999998753221 1234444544444 6799999999999
Q ss_pred HHHHHHHHHHHH
Q 027438 164 VTAAFQTVVTEI 175 (223)
Q Consensus 164 i~~~~~~l~~~~ 175 (223)
++++++.|....
T Consensus 154 I~~L~~~L~~~~ 165 (614)
T PRK10512 154 IDALREHLLQLP 165 (614)
T ss_pred CHHHHHHHHHhh
Confidence 999999987543
No 213
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.78 E-value=2.9e-18 Score=142.72 Aligned_cols=162 Identities=19% Similarity=0.143 Sum_probs=103.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCC---CCC--CcceeeeEE----------------EEEEECC------EEEE
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYP---NSK--STIGVEFQT----------------QKMDING------KEVK 64 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~---~~~--~~~~~~~~~----------------~~~~~~~------~~~~ 64 (223)
+..++|+++|++++|||||+++|.+..... ... .+....+.. .....++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 467899999999999999999997642211 100 111111000 0000011 1467
Q ss_pred EEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHH
Q 027438 65 AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV--TTAEG 142 (223)
Q Consensus 65 ~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~--~~~~~ 142 (223)
+.+||+||++.|...+......+|++++|+|++++.........+..+... . ..|+++++||+|+.+.... ..++.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-g-i~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-G-IKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-C-CCeEEEEEEccccCCHHHHHHHHHHH
Confidence 899999999999888888888999999999999643111112222222222 1 2578999999998753221 12333
Q ss_pred HHHHHHc---CCeEEEeccCCCCCHHHHHHHHHHHH
Q 027438 143 KALAEAQ---GLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 143 ~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
..+.... +++++++||++|.|+++++++|...+
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 4444332 57899999999999999999987543
No 214
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.78 E-value=5.2e-18 Score=131.33 Aligned_cols=114 Identities=18% Similarity=0.173 Sum_probs=81.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCC-------------C---CCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcc
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPN-------------S---KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV 79 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 79 (223)
+|+++|++|+|||||+++|+...-... + ....+.+.......+......+.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999986311100 0 011122333334444445678899999999999888
Q ss_pred hHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027438 80 TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 80 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~ 133 (223)
+..+++.+|++++|+|..+.... ....|+..+... +.|+++++||+|+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECccccC
Confidence 88899999999999999986543 234444444432 689999999999863
No 215
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.77 E-value=6.3e-18 Score=129.28 Aligned_cols=113 Identities=24% Similarity=0.302 Sum_probs=80.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCC-----------------CCcceeeeEEEEEEE-----CCEEEEEEEEeCCCc
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNS-----------------KSTIGVEFQTQKMDI-----NGKEVKAQIWDTAGQ 73 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~G~ 73 (223)
+|+|+|++|+|||||+++|+........ ....+.+.......+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875332210 011122222222211 345688999999999
Q ss_pred chhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027438 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132 (223)
Q Consensus 74 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~ 132 (223)
..+......++..+|++|+|+|+.+..+... ..|+..... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9998888888999999999999988765533 344444332 258999999999975
No 216
>PRK12736 elongation factor Tu; Reviewed
Probab=99.76 E-value=2.6e-17 Score=136.60 Aligned_cols=150 Identities=17% Similarity=0.143 Sum_probs=99.4
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCC--------------CCCCcceeeeEEEEEEECCEEEEEEEEeCCCcc
Q 027438 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYP--------------NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74 (223)
Q Consensus 9 ~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 74 (223)
....+.++|+++|++++|||||+++|++..... ......|.+.......+......+.+|||||+.
T Consensus 7 ~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 7 DRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred ccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH
Confidence 346667999999999999999999998631100 000122444445555555555678899999999
Q ss_pred hhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcccC---HHHHHHHHHHcC
Q 027438 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDAREVT---TAEGKALAEAQG 150 (223)
Q Consensus 75 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~D~~~~~~~~---~~~~~~~~~~~~ 150 (223)
+|.......+..+|++++|+|++....-.. ...+..+... +.| +|+++||+|+.+..+.. .++...+....+
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence 987777777789999999999987422222 1222222222 567 67889999987432221 234455554444
Q ss_pred -----CeEEEeccCCCC
Q 027438 151 -----LFFMETSALDSS 162 (223)
Q Consensus 151 -----~~~~~~Sa~~~~ 162 (223)
++++++||.+|.
T Consensus 163 ~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 163 FPGDDIPVIRGSALKAL 179 (394)
T ss_pred CCcCCccEEEeeccccc
Confidence 579999999983
No 217
>COG2262 HflX GTPases [General function prediction only]
Probab=99.76 E-value=5.2e-17 Score=130.47 Aligned_cols=162 Identities=20% Similarity=0.192 Sum_probs=116.8
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcch---------hhcch
Q 027438 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER---------FRAVT 80 (223)
Q Consensus 10 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~ 80 (223)
.....+.|.++|..++|||||+|+|++........-+.+.+.....+.+.+ +..+.+.||.|.-+ |.+..
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL 266 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL 266 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH
Confidence 345678999999999999999999998766544444445555566666664 45677999999332 33333
Q ss_pred HhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCC
Q 027438 81 SAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALD 160 (223)
Q Consensus 81 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (223)
+. ...+|+++.|+|+++|...+.+..-...+.......+|+|+|.||+|+..... .........-..+.+||++
T Consensus 267 EE-~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~ 340 (411)
T COG2262 267 EE-VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKT 340 (411)
T ss_pred HH-hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEecc
Confidence 32 36899999999999997777776666666665555699999999999875332 1111111111589999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 027438 161 SSNVTAAFQTVVTEIYNI 178 (223)
Q Consensus 161 ~~~i~~~~~~l~~~~~~~ 178 (223)
|.|++.+++.|...+...
T Consensus 341 ~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 341 GEGLDLLRERIIELLSGL 358 (411)
T ss_pred CcCHHHHHHHHHHHhhhc
Confidence 999999999998877544
No 218
>PRK12735 elongation factor Tu; Reviewed
Probab=99.75 E-value=3.7e-17 Score=135.73 Aligned_cols=154 Identities=18% Similarity=0.146 Sum_probs=101.4
Q ss_pred cccccCCeeeEEEEEcCCCCCHHHHHHHHHcCCC-------------CC-CCCCcceeeeEEEEEEECCEEEEEEEEeCC
Q 027438 6 EEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEF-------------YP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71 (223)
Q Consensus 6 ~~~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~-------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 71 (223)
+...+..+.++|+++|++++|||||+++|++... +. ......|.+.......+......+.|+|||
T Consensus 4 ~~~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtP 83 (396)
T PRK12735 4 EKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCP 83 (396)
T ss_pred hhcCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECC
Confidence 3445667789999999999999999999986200 00 001122444444555555555678899999
Q ss_pred CcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCCCCCccc---CHHHHHHHHH
Q 027438 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTI-LVGNKSDLKDAREV---TTAEGKALAE 147 (223)
Q Consensus 72 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~D~~~~~~~---~~~~~~~~~~ 147 (223)
|+..|.......+..+|++++|+|+.+...-+. ..++..+.. .++|.+ +++||+|+.+..+. ..++...+..
T Consensus 84 Gh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~ 159 (396)
T PRK12735 84 GHADYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred CHHHHHHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 999887777777889999999999987432222 222333322 257755 57999998742221 1234555555
Q ss_pred HcC-----CeEEEeccCCCCC
Q 027438 148 AQG-----LFFMETSALDSSN 163 (223)
Q Consensus 148 ~~~-----~~~~~~Sa~~~~~ 163 (223)
..+ ++++++||.+|.+
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 160 KYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HcCCCcCceeEEecchhcccc
Confidence 543 6799999999853
No 219
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.75 E-value=9.3e-17 Score=117.95 Aligned_cols=158 Identities=18% Similarity=0.239 Sum_probs=110.6
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC----------cchhhcc
Q 027438 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG----------QERFRAV 79 (223)
Q Consensus 10 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~ 79 (223)
+.+...-|+++|.++||||||||+|++.........+.|.+.....+.+++. +.++|.|| .+.+..+
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence 3446688999999999999999999997754555666677777777777764 56999999 4456666
Q ss_pred hHhhhc---CCcEEEEEEECCCHhhHHHH--HHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC---HHHHHHHHHHcCC
Q 027438 80 TSAYYR---GAVGALLVYDISRRQTFDSI--GRWLNELHTHSDMNVVTILVGNKSDLKDAREVT---TAEGKALAEAQGL 151 (223)
Q Consensus 80 ~~~~~~---~~d~vi~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~---~~~~~~~~~~~~~ 151 (223)
...|+. +..++++++|...+-.-... -+|+.. .+.|+++|+||+|.....+.. ...+..+......
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~------~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~ 170 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE------LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPD 170 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH------cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCc
Confidence 677764 35678889999876443221 233332 279999999999988643332 1112122222222
Q ss_pred e--EEEeccCCCCCHHHHHHHHHHHHH
Q 027438 152 F--FMETSALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 152 ~--~~~~Sa~~~~~i~~~~~~l~~~~~ 176 (223)
. ++..|+.++.|++++...|.+.+.
T Consensus 171 ~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 171 DQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred cceEEEEecccccCHHHHHHHHHHHhh
Confidence 3 778899999999999998887653
No 220
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.75 E-value=3.9e-17 Score=135.65 Aligned_cols=155 Identities=17% Similarity=0.114 Sum_probs=101.1
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHHcCCC-------------CC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCcc
Q 027438 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEF-------------YP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74 (223)
Q Consensus 9 ~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~-------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 74 (223)
+...+.++|+++|+.++|||||+++|++... .. ......|.+.....+.++.....+.||||||++
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence 3456679999999999999999999974200 00 000112444445555565566778899999999
Q ss_pred hhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCCCCCcccC---HHHHHHHHHHcC
Q 027438 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTI-LVGNKSDLKDAREVT---TAEGKALAEAQG 150 (223)
Q Consensus 75 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~D~~~~~~~~---~~~~~~~~~~~~ 150 (223)
.|..........+|++++|+|+......... ..+..+... +.|.+ +++||+|+.+..+.. .++.+.+....+
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 9877777677889999999999874222221 222222222 46655 689999987532211 234556666554
Q ss_pred -----CeEEEeccCCCC-CHHHH
Q 027438 151 -----LFFMETSALDSS-NVTAA 167 (223)
Q Consensus 151 -----~~~~~~Sa~~~~-~i~~~ 167 (223)
++++++||.+|. |..++
T Consensus 163 ~~~~~~~ii~vSa~~g~~g~~~~ 185 (394)
T TIGR00485 163 FPGDDTPIIRGSALKALEGDAEW 185 (394)
T ss_pred CCccCccEEECccccccccCCch
Confidence 679999999884 43333
No 221
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.74 E-value=8.4e-18 Score=139.45 Aligned_cols=162 Identities=27% Similarity=0.307 Sum_probs=122.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEE
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 91 (223)
...+||+|+|+.|+||||||=+|+...+.+...+-... ......+....+..+++|++..+..+......++.+|++.
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~--i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPR--ILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCc--cccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 34599999999999999999999999887655433221 1222334445667889999876666666677889999999
Q ss_pred EEEECCCHhhHHHH-HHHHHHHhhcC--CCCCcEEEEEeCCCCCCCcccCHHH-HHHHHHHc-CCe-EEEeccCCCCCHH
Q 027438 92 LVYDISRRQTFDSI-GRWLNELHTHS--DMNVVTILVGNKSDLKDAREVTTAE-GKALAEAQ-GLF-FMETSALDSSNVT 165 (223)
Q Consensus 92 ~v~d~~~~~s~~~~-~~~~~~i~~~~--~~~~piilv~nK~D~~~~~~~~~~~-~~~~~~~~-~~~-~~~~Sa~~~~~i~ 165 (223)
++|+++++.+++.+ ..|+..+++.. ..+.|||+||||+|.......+.+. ..-+...+ .+. .++|||++-.++.
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~ 164 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVS 164 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhH
Confidence 99999999999999 57999998775 2479999999999988654443333 33333333 233 7999999999999
Q ss_pred HHHHHHHHHH
Q 027438 166 AAFQTVVTEI 175 (223)
Q Consensus 166 ~~~~~l~~~~ 175 (223)
++|......+
T Consensus 165 e~fYyaqKaV 174 (625)
T KOG1707|consen 165 ELFYYAQKAV 174 (625)
T ss_pred hhhhhhhhee
Confidence 9998765443
No 222
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.74 E-value=8.4e-17 Score=136.62 Aligned_cols=153 Identities=18% Similarity=0.195 Sum_probs=110.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchh------hcchHhhh--c
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF------RAVTSAYY--R 85 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~------~~~~~~~~--~ 85 (223)
..+|+++|+|++|||||+|+|++.+......+..+++.........+ .+++++|.||.-+. ......++ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 45699999999999999999999877666666655555555555555 44779999993332 22333343 4
Q ss_pred CCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 027438 86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVT 165 (223)
Q Consensus 86 ~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 165 (223)
.+|++|-|+|.+|.+.--.+.-.+ .+-+.|++++.|++|..+.+-+ .-....+.+.+|+|+++++|++|.|++
T Consensus 81 ~~D~ivnVvDAtnLeRnLyltlQL------lE~g~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYLTLQL------LELGIPMILALNMIDEAKKRGI-RIDIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred CCCEEEEEcccchHHHHHHHHHHH------HHcCCCeEEEeccHhhHHhcCC-cccHHHHHHHhCCCEEEEEeecCCCHH
Confidence 679999999999865422222111 2227899999999998764332 334466778899999999999999999
Q ss_pred HHHHHHHHHH
Q 027438 166 AAFQTVVTEI 175 (223)
Q Consensus 166 ~~~~~l~~~~ 175 (223)
++...+.+..
T Consensus 154 ~l~~~i~~~~ 163 (653)
T COG0370 154 ELKRAIIELA 163 (653)
T ss_pred HHHHHHHHhc
Confidence 9999887533
No 223
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.74 E-value=3e-17 Score=112.61 Aligned_cols=158 Identities=23% Similarity=0.333 Sum_probs=118.7
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcE
Q 027438 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 10 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
+...+++|+++|-.++|||||+..|.+... ....++.|++.. .+.++ ..+.+.+||++|+...+..|..|+.+.|+
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~k--~v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~ 88 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNTK--KVEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDG 88 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcceE--EEeec-CcEEEEEEecCCccccchhhhhhhhccce
Confidence 446789999999999999999999987543 334455565443 33344 45789999999999999999999999999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhh-cCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcCCeEEEeccCCCCC
Q 027438 90 ALLVYDISRRQTFDSIGRWLNELHT-HSDMNVVTILVGNKSDLKDAREVTTAEGKALA-----EAQGLFFMETSALDSSN 163 (223)
Q Consensus 90 vi~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~ 163 (223)
+|+|+|.++...|+++...+-++.. ..-...|+.+..||-|+..+.. .++...-+ ....+.+-+|||.+++|
T Consensus 89 lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~--~eeia~klnl~~lrdRswhIq~csals~eg 166 (185)
T KOG0074|consen 89 LIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK--VEEIALKLNLAGLRDRSWHIQECSALSLEG 166 (185)
T ss_pred EEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc--hHHHHHhcchhhhhhceEEeeeCccccccC
Confidence 9999999999889988766666543 3445789999999999875322 22211111 11133478899999999
Q ss_pred HHHHHHHHHH
Q 027438 164 VTAAFQTVVT 173 (223)
Q Consensus 164 i~~~~~~l~~ 173 (223)
+.+-.++++.
T Consensus 167 ~~dg~~wv~s 176 (185)
T KOG0074|consen 167 STDGSDWVQS 176 (185)
T ss_pred ccCcchhhhc
Confidence 9999988864
No 224
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.74 E-value=1.7e-17 Score=127.40 Aligned_cols=147 Identities=20% Similarity=0.133 Sum_probs=93.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC--CC--------------C-------------CCCcceeeeEEEEEEECCEEEEEE
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEF--YP--------------N-------------SKSTIGVEFQTQKMDINGKEVKAQ 66 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~--~~--------------~-------------~~~~~~~~~~~~~~~~~~~~~~~~ 66 (223)
+|+++|++++|||||+.+|+...- .. . .....|.+.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 589999999999999999964210 00 0 001113333333444444557889
Q ss_pred EEeCCCcchhhcchHhhhcCCcEEEEEEECCCHh-------hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC--ccc
Q 027438 67 IWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ-------TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA--REV 137 (223)
Q Consensus 67 l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~--~~~ 137 (223)
+|||||+..+...+...+..+|++|+|+|+++.. ..+....| ...... . ..|+++++||+|+... .+.
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLARTL-G-VKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHHc-C-CCeEEEEEEccccccccccHH
Confidence 9999999888777777778899999999999842 11222222 222222 1 3688999999998732 111
Q ss_pred ----CHHHHHHHHHHcC-----CeEEEeccCCCCCHH
Q 027438 138 ----TTAEGKALAEAQG-----LFFMETSALDSSNVT 165 (223)
Q Consensus 138 ----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~ 165 (223)
..++...+....+ ++++++||++|.|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1122222334433 569999999999987
No 225
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=8.5e-17 Score=125.67 Aligned_cols=161 Identities=19% Similarity=0.144 Sum_probs=114.4
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcch-----hhc---ch
Q 027438 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-----FRA---VT 80 (223)
Q Consensus 9 ~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-----~~~---~~ 80 (223)
..+...+.|+|.|.|+||||||++++++........|+++-......+ ...+.+++++||||.-+ .+. ..
T Consensus 163 ~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhf--e~~~~R~QvIDTPGlLDRPl~ErN~IE~qA 240 (346)
T COG1084 163 AIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHF--ERGYLRIQVIDTPGLLDRPLEERNEIERQA 240 (346)
T ss_pred CCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeee--ecCCceEEEecCCcccCCChHHhcHHHHHH
Confidence 345567899999999999999999999988877777775555555444 33446788999999221 111 11
Q ss_pred Hhhhc-CCcEEEEEEECCC--HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-eEEEe
Q 027438 81 SAYYR-GAVGALLVYDISR--RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL-FFMET 156 (223)
Q Consensus 81 ~~~~~-~~d~vi~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~ 156 (223)
...++ -.++++|+||.+. ..+.+.....+..+..... .|+++|.||+|..+.... +++.......+. ....+
T Consensus 241 i~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~ 316 (346)
T COG1084 241 ILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKI 316 (346)
T ss_pred HHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHH--HHHHHHHHhhccccccce
Confidence 12223 4778999999987 4567777788888887775 899999999998854332 333333344444 37889
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q 027438 157 SALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 157 Sa~~~~~i~~~~~~l~~~~ 175 (223)
++..+.+++.+.+.+...+
T Consensus 317 ~~~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 317 SATKGCGLDKLREEVRKTA 335 (346)
T ss_pred eeeehhhHHHHHHHHHHHh
Confidence 9999999998887776554
No 226
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=6.9e-18 Score=116.08 Aligned_cols=158 Identities=23% Similarity=0.359 Sum_probs=116.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEE
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 91 (223)
+...+|+++|--|+|||+++.++.-++.. ...|++|.+...... +...+++||..|+.+.+..|.-++.+.|++|
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve~v~y----KNLk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVETVPY----KNLKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCcccccc----ccccceeeEccCcccccHHHHHHhcccceEE
Confidence 36789999999999999999888766653 345565655544332 6678999999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHH-HHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH-----HHHcCCeEEEeccCCCCCHH
Q 027438 92 LVYDISRRQTFDSIGR-WLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKAL-----AEAQGLFFMETSALDSSNVT 165 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~ 165 (223)
+|+|.+|......... ++..+....-.+..+++++||.|.... ....|+... .+..-+.+|++||.+|+|++
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~--~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld 168 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA--LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD 168 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh--hhHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence 9999999877665544 333443333334667788999998642 222332221 22223569999999999999
Q ss_pred HHHHHHHHHHH
Q 027438 166 AAFQTVVTEIY 176 (223)
Q Consensus 166 ~~~~~l~~~~~ 176 (223)
+.++||.+-+.
T Consensus 169 ~~~DWL~~~l~ 179 (182)
T KOG0072|consen 169 PAMDWLQRPLK 179 (182)
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 227
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.73 E-value=2.3e-16 Score=121.14 Aligned_cols=153 Identities=18% Similarity=0.157 Sum_probs=95.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCc-----------------------ceeeeEEEE-------------EEEC
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKST-----------------------IGVEFQTQK-------------MDIN 59 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~-----------------------~~~~~~~~~-------------~~~~ 59 (223)
||+++|+.++|||||+++|..+.+....... .|.+..... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999976554321100 000100000 0011
Q ss_pred CEEEEEEEEeCCCcchhhcchHhhhc--CCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc
Q 027438 60 GKEVKAQIWDTAGQERFRAVTSAYYR--GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV 137 (223)
Q Consensus 60 ~~~~~~~l~D~~G~~~~~~~~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~ 137 (223)
.....+.++||||+..+.......+. .+|++++|+|+.....- .-..++..+... ++|+++|+||+|+.+....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKEHLGLALAL---NIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEECccccCHHHH
Confidence 12356889999999988765555553 69999999999875331 122333333322 6899999999998653221
Q ss_pred C--HHHHHHHHH--------------------------HcCCeEEEeccCCCCCHHHHHHHHH
Q 027438 138 T--TAEGKALAE--------------------------AQGLFFMETSALDSSNVTAAFQTVV 172 (223)
Q Consensus 138 ~--~~~~~~~~~--------------------------~~~~~~~~~Sa~~~~~i~~~~~~l~ 172 (223)
. .++...+.. ...+|+|.+|+.+|+|++++...|.
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 1 112222211 1124799999999999999998774
No 228
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=5.1e-16 Score=128.52 Aligned_cols=153 Identities=20% Similarity=0.223 Sum_probs=113.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECC-EEEEEEEEeCCCcchhhcchHhhhcCCcEEE
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING-KEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 91 (223)
..+=|.++|+...|||||+..+..........-.++.+.....+..+. ....+.|+|||||+.|..++..-..-+|++|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 346689999999999999999998877665554445555555555542 2346889999999999999999999999999
Q ss_pred EEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH-------HHHcC--CeEEEeccC
Q 027438 92 LVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKAL-------AEAQG--LFFMETSAL 159 (223)
Q Consensus 92 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~Sa~ 159 (223)
+|+++++ |++.+.+ ......+.|+++++||+|+.+.+. .....- ...++ ..++++||+
T Consensus 84 LVVa~dDGv~pQTiEAI-------~hak~a~vP~iVAiNKiDk~~~np---~~v~~el~~~gl~~E~~gg~v~~VpvSA~ 153 (509)
T COG0532 84 LVVAADDGVMPQTIEAI-------NHAKAAGVPIVVAINKIDKPEANP---DKVKQELQEYGLVPEEWGGDVIFVPVSAK 153 (509)
T ss_pred EEEEccCCcchhHHHHH-------HHHHHCCCCEEEEEecccCCCCCH---HHHHHHHHHcCCCHhhcCCceEEEEeecc
Confidence 9999998 5554442 222334899999999999985422 222221 22222 358999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 027438 160 DSSNVTAAFQTVVTEI 175 (223)
Q Consensus 160 ~~~~i~~~~~~l~~~~ 175 (223)
+|+|+++|++.++-..
T Consensus 154 tg~Gi~eLL~~ill~a 169 (509)
T COG0532 154 TGEGIDELLELILLLA 169 (509)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987433
No 229
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.72 E-value=5.6e-16 Score=117.05 Aligned_cols=161 Identities=14% Similarity=0.153 Sum_probs=97.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccee---eeEEEEEEECCEEEEEEEEeCCCcchhhcchHhh-----hc
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGV---EFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAY-----YR 85 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~-----~~ 85 (223)
.++|+|+|++|+|||||+|+|.+.........+.+. +.....+.. .....+.+|||||..........+ +.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 378999999999999999999986543322222221 111111111 112367899999965432222222 56
Q ss_pred CCcEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-----------cCHHHHHHHH----HHc
Q 027438 86 GAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDARE-----------VTTAEGKALA----EAQ 149 (223)
Q Consensus 86 ~~d~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~D~~~~~~-----------~~~~~~~~~~----~~~ 149 (223)
.+|+++++.+- .+... ..|+..+... +.|+++|+||+|+....+ ...++.+..+ ...
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 78988887442 23333 3455555443 579999999999853211 0111112211 121
Q ss_pred C---CeEEEeccC--CCCCHHHHHHHHHHHHHHHHhhh
Q 027438 150 G---LFFMETSAL--DSSNVTAAFQTVVTEIYNILSRK 182 (223)
Q Consensus 150 ~---~~~~~~Sa~--~~~~i~~~~~~l~~~~~~~~~~~ 182 (223)
+ .++|.+|+. .+.|+..+.+.|+..+.++...-
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~~ 190 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRHV 190 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHHH
Confidence 2 248999998 67999999999998887755443
No 230
>CHL00071 tufA elongation factor Tu
Probab=99.72 E-value=3.1e-16 Score=130.80 Aligned_cols=154 Identities=16% Similarity=0.121 Sum_probs=101.8
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCC--------------CCCCcceeeeEEEEEEECCEEEEEEEEeCCC
Q 027438 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYP--------------NSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72 (223)
Q Consensus 7 ~~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 72 (223)
-+......++|+++|++++|||||+++|++..-.. ......|.+.......+......+.|+||||
T Consensus 5 ~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPG 84 (409)
T CHL00071 5 KFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPG 84 (409)
T ss_pred hccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCC
Confidence 34556777999999999999999999998741100 0001124444444444544556778999999
Q ss_pred cchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHH
Q 027438 73 QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDAREV---TTAEGKALAEA 148 (223)
Q Consensus 73 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~D~~~~~~~---~~~~~~~~~~~ 148 (223)
+..+.......+..+|++++|+|+.....-.. ...+..+... ++| +|+++||+|+.+..+. ..++...+...
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~ 160 (409)
T CHL00071 85 HADYVKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSK 160 (409)
T ss_pred hHHHHHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHH
Confidence 99887777778889999999999986432221 2222222222 567 7788999999753221 12344445444
Q ss_pred cC-----CeEEEeccCCCCCH
Q 027438 149 QG-----LFFMETSALDSSNV 164 (223)
Q Consensus 149 ~~-----~~~~~~Sa~~~~~i 164 (223)
.+ ++++++||.+|.++
T Consensus 161 ~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 161 YDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred hCCCCCcceEEEcchhhcccc
Confidence 43 67999999998754
No 231
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.71 E-value=6.8e-16 Score=120.32 Aligned_cols=155 Identities=21% Similarity=0.159 Sum_probs=113.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcch-------hhcchHhhh
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-------FRAVTSAYY 84 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~ 84 (223)
.-..+|+++|.|++|||||+++|++........++++.+..+..+.+++ ..+++.|+||.-. ......+..
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeee
Confidence 3457899999999999999999999887776677767777777776766 7788999998322 123455677
Q ss_pred cCCcEEEEEEECCCHhh-HHHHHHHHHHHhhcCCC---------------------------------------------
Q 027438 85 RGAVGALLVYDISRRQT-FDSIGRWLNELHTHSDM--------------------------------------------- 118 (223)
Q Consensus 85 ~~~d~vi~v~d~~~~~s-~~~~~~~~~~i~~~~~~--------------------------------------------- 118 (223)
++||++|+|+|+..... .+.+...+....-..+.
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV 218 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence 99999999999997554 44444433332211111
Q ss_pred --------------------CCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027438 119 --------------------NVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 119 --------------------~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
-+|.+.|.||.|+.. .++...+.+.. ..+.+||+.+.|++++.+.|-..+
T Consensus 219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred EEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 267899999999875 34444444443 689999999999999999887655
No 232
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.71 E-value=3.2e-16 Score=121.64 Aligned_cols=157 Identities=18% Similarity=0.160 Sum_probs=112.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhc----chH---hhhcC
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA----VTS---AYYRG 86 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----~~~---~~~~~ 86 (223)
...|.++|-|++|||||+++|...+......++++.......+.+++ ...+.+-|+||.-.-.. +-. ..++.
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccc-cceeEeccCccccccccccCcccHHHHHHHHh
Confidence 35678999999999999999998766555555545555555444443 33488999999433211 222 23467
Q ss_pred CcEEEEEEECCCH---hhHHHHHHHHHHHhhc--CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEeccCC
Q 027438 87 AVGALLVYDISRR---QTFDSIGRWLNELHTH--SDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-FMETSALD 160 (223)
Q Consensus 87 ~d~vi~v~d~~~~---~s~~~~~~~~~~i~~~--~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~ 160 (223)
++.+++|+|++.+ ..++.++....++..+ .-...|.++|+||+|+.++. .....++++...-+ ++++||++
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~ 351 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKS 351 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeecc
Confidence 9999999999998 7777777666665433 23368999999999986421 22235666666655 99999999
Q ss_pred CCCHHHHHHHHHHH
Q 027438 161 SSNVTAAFQTVVTE 174 (223)
Q Consensus 161 ~~~i~~~~~~l~~~ 174 (223)
++|+.++++.|.+.
T Consensus 352 ~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 352 GEGLEELLNGLREL 365 (366)
T ss_pred ccchHHHHHHHhhc
Confidence 99999999988653
No 233
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.70 E-value=7.2e-16 Score=129.42 Aligned_cols=152 Identities=18% Similarity=0.190 Sum_probs=103.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCC--CC---------------------------CCCCcceeeeEEEEEEECCE
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEF--YP---------------------------NSKSTIGVEFQTQKMDINGK 61 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~ 61 (223)
..+.++|+++|+.++|||||+.+|+...- .. .....-|.+.......+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 45679999999999999999998874210 00 00011133444444555566
Q ss_pred EEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHhhHH-------HHHHHHHHHhhcCCCCC-cEEEEEeCCCCCC
Q 027438 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFD-------SIGRWLNELHTHSDMNV-VTILVGNKSDLKD 133 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~-------~~~~~~~~i~~~~~~~~-piilv~nK~D~~~ 133 (223)
...+.++|+||+.+|.......+..+|++|+|+|+++. .|+ .....+..+.. .++ ++|+++||+|+.+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATT 159 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCc
Confidence 67889999999999999999999999999999999873 232 22222222222 245 5788899999762
Q ss_pred C--cc----cCHHHHHHHHHHcC-----CeEEEeccCCCCCHHH
Q 027438 134 A--RE----VTTAEGKALAEAQG-----LFFMETSALDSSNVTA 166 (223)
Q Consensus 134 ~--~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 166 (223)
. .+ -..++++.++...+ ++|+++||.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 1 01 11345666666665 5699999999999864
No 234
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.69 E-value=8.8e-16 Score=121.43 Aligned_cols=143 Identities=16% Similarity=0.239 Sum_probs=94.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCCCCC----------CCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcc---
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPN----------SKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV--- 79 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--- 79 (223)
..++|+|+|++|+|||||+++|++..+... ..++.+.......+..++..+.+.+|||||.......
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999998876543 2334444555555666778889999999994332110
Q ss_pred -----------------------hHhhhc--CCcEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027438 80 -----------------------TSAYYR--GAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 80 -----------------------~~~~~~--~~d~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~D~~~ 133 (223)
+...+. .+|+++++++.+... +... ...++.+. . ..|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~---~-~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS---K-RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh---c-cCCEEEEEECCCcCC
Confidence 001122 477888888877521 1111 22233332 2 589999999999865
Q ss_pred Ccc--cCHHHHHHHHHHcCCeEEEeccCC
Q 027438 134 ARE--VTTAEGKALAEAQGLFFMETSALD 160 (223)
Q Consensus 134 ~~~--~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (223)
..+ ...+.+++.+..+++++|......
T Consensus 158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 322 335556677788899988776543
No 235
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=3.9e-16 Score=128.84 Aligned_cols=161 Identities=21% Similarity=0.210 Sum_probs=118.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCC---------------CCCCCCcceeeeEEEE-EEECCEEEEEEEEeCCCcc
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEF---------------YPNSKSTIGVEFQTQK-MDINGKEVKAQIWDTAGQE 74 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~---------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~D~~G~~ 74 (223)
.+...++.|+-+...|||||..+|+...- ..+....+++.-.... ++.++..+.++++|||||-
T Consensus 57 ~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHv 136 (650)
T KOG0462|consen 57 VENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHV 136 (650)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcc
Confidence 36678999999999999999999975211 1111122222222222 2234677999999999999
Q ss_pred hhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHHcCCeE
Q 027438 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE-VTTAEGKALAEAQGLFF 153 (223)
Q Consensus 75 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~ 153 (223)
+|...-...+.-++++|+|+|+...-.-+.+..++..+.. +..+|.|+||+|+..++. .-..+..++......++
T Consensus 137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~ 212 (650)
T KOG0462|consen 137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEV 212 (650)
T ss_pred cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccce
Confidence 9999999999999999999999986555555555555443 678999999999987532 22333444545555679
Q ss_pred EEeccCCCCCHHHHHHHHHHHH
Q 027438 154 METSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 154 ~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
+.+||++|.|++++++++++++
T Consensus 213 i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 213 IYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred EEEEeccCccHHHHHHHHHhhC
Confidence 9999999999999999999877
No 236
>PRK00049 elongation factor Tu; Reviewed
Probab=99.69 E-value=1.4e-15 Score=126.28 Aligned_cols=154 Identities=18% Similarity=0.143 Sum_probs=100.6
Q ss_pred cccccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCC--------------CCCCcceeeeEEEEEEECCEEEEEEEEeCC
Q 027438 6 EEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYP--------------NSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71 (223)
Q Consensus 6 ~~~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 71 (223)
|......+.++|+++|++++|||||+++|++..... ......|.+.......+......+.++|||
T Consensus 4 ~~~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtP 83 (396)
T PRK00049 4 EKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCP 83 (396)
T ss_pred hhccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECC
Confidence 344556778999999999999999999998731100 000122444444455554455678899999
Q ss_pred CcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCCCCCccc---CHHHHHHHHH
Q 027438 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTI-LVGNKSDLKDAREV---TTAEGKALAE 147 (223)
Q Consensus 72 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~D~~~~~~~---~~~~~~~~~~ 147 (223)
|+..+.......+..+|++++|+|+..+..-.. ..++..+... +.|.+ +++||+|+.+..+. ...+...+..
T Consensus 84 G~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~ 159 (396)
T PRK00049 84 GHADYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred CHHHHHHHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHH
Confidence 998887777777899999999999987532221 2233333322 57875 57999998742221 1223344444
Q ss_pred Hc-----CCeEEEeccCCCCC
Q 027438 148 AQ-----GLFFMETSALDSSN 163 (223)
Q Consensus 148 ~~-----~~~~~~~Sa~~~~~ 163 (223)
.. +++++.+||.++.+
T Consensus 160 ~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 160 KYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred hcCCCccCCcEEEeecccccC
Confidence 33 36799999998753
No 237
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.69 E-value=1.5e-15 Score=119.50 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=80.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCC---------C-----------cceeeeEEEEEEECCEEEEEEEEeCCCcc
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSK---------S-----------TIGVEFQTQKMDINGKEVKAQIWDTAGQE 74 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 74 (223)
.+|+|+|++|+|||||+++|+...-..... . ..+.+.......+....+.+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 579999999999999999998521100000 0 01223334444555566889999999999
Q ss_pred hhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027438 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134 (223)
Q Consensus 75 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~ 134 (223)
++.......++.+|++|+|+|.++.... ....++..... .++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCCC
Confidence 8887777788999999999999875332 22333333322 26899999999998654
No 238
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.69 E-value=5.5e-16 Score=118.57 Aligned_cols=113 Identities=20% Similarity=0.195 Sum_probs=78.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCC--CCC--------------CCcceeeeEEEEEEEC--------CEEEEEEEEeCC
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFY--PNS--------------KSTIGVEFQTQKMDIN--------GKEVKAQIWDTA 71 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~--~~~--------------~~~~~~~~~~~~~~~~--------~~~~~~~l~D~~ 71 (223)
+|+|+|+.++|||||+++|+...-. ... ....+.........+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 7999999999999999999853211 000 0001111111122232 347889999999
Q ss_pred CcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027438 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132 (223)
Q Consensus 72 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~ 132 (223)
|+..+.......++.+|++++|+|+.+..+.+....|.. .. ..+.|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~-~~---~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQ-AL---KERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHH-HH---HcCCCEEEEEECCCcc
Confidence 999999999999999999999999998765544333322 22 1257999999999976
No 239
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.69 E-value=5.3e-16 Score=131.21 Aligned_cols=156 Identities=21% Similarity=0.167 Sum_probs=99.2
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCC-------------CC------------------cceeeeEEEEEEE
Q 027438 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNS-------------KS------------------TIGVEFQTQKMDI 58 (223)
Q Consensus 10 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~-------------~~------------------~~~~~~~~~~~~~ 58 (223)
+....++|+++|++++|||||+++|+...-.... .. .-|.+.......+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 4466799999999999999999999754211100 00 0122233333344
Q ss_pred CCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC
Q 027438 59 NGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT 138 (223)
Q Consensus 59 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~ 138 (223)
......+.||||||+..+.......+..+|++++|+|+.....-.....|. .+... . ..|+|+++||+|+.+.++..
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~-l~~~l-g-~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF-IATLL-G-IKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH-HHHHh-C-CCceEEEEEeeccccchhHH
Confidence 445567889999999988776666679999999999998643211111121 11111 1 24789999999987532211
Q ss_pred HHH----HHHHHHHc----CCeEEEeccCCCCCHHHHH
Q 027438 139 TAE----GKALAEAQ----GLFFMETSALDSSNVTAAF 168 (223)
Q Consensus 139 ~~~----~~~~~~~~----~~~~~~~Sa~~~~~i~~~~ 168 (223)
.++ ...+.... .++++++||++|.|++++-
T Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 222 22223333 3679999999999998754
No 240
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.68 E-value=1.4e-15 Score=118.56 Aligned_cols=163 Identities=18% Similarity=0.322 Sum_probs=121.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEE--CCEEEEEEEEeCCCcchhhcchHhhhcCC---
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI--NGKEVKAQIWDTAGQERFRAVTSAYYRGA--- 87 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~~--- 87 (223)
..-+|+|+|+.++||||||.+|-+.+ ...+..+..+-+..+.- .+...++.+|-..|.-....+....+...
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 34689999999999999999999865 23333345444444333 23456778999988777777776665433
Q ss_pred -cEEEEEEECCCHhh-HHHHHHHHHHHhhcCCC-----------------------------------------------
Q 027438 88 -VGALLVYDISRRQT-FDSIGRWLNELHTHSDM----------------------------------------------- 118 (223)
Q Consensus 88 -d~vi~v~d~~~~~s-~~~~~~~~~~i~~~~~~----------------------------------------------- 118 (223)
.++|++.|+++|++ ++++.+|...+..+.+.
T Consensus 128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~ 207 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH 207 (473)
T ss_pred ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence 36899999999976 78889998877653221
Q ss_pred --------------CCcEEEEEeCCCCCC----Ccc-------cCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027438 119 --------------NVVTILVGNKSDLKD----ARE-------VTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 119 --------------~~piilv~nK~D~~~----~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
++|+++|.||+|... +-+ .-....+.||.++|+.+|.+|+++..|++.++..|.+
T Consensus 208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh 287 (473)
T KOG3905|consen 208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH 287 (473)
T ss_pred cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence 688999999999832 222 2234577899999999999999999999999999999
Q ss_pred HHHHH
Q 027438 174 EIYNI 178 (223)
Q Consensus 174 ~~~~~ 178 (223)
++|..
T Consensus 288 r~yG~ 292 (473)
T KOG3905|consen 288 RSYGF 292 (473)
T ss_pred HhcCc
Confidence 88753
No 241
>PLN03126 Elongation factor Tu; Provisional
Probab=99.68 E-value=1.6e-15 Score=127.92 Aligned_cols=151 Identities=17% Similarity=0.125 Sum_probs=100.3
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHHcCCC------CC--------CCCCcceeeeEEEEEEECCEEEEEEEEeCCCcch
Q 027438 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEF------YP--------NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75 (223)
Q Consensus 10 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 75 (223)
.....++|+++|++++|||||+++|++..- .. ......+.+.......+......+.++|+||+..
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 456789999999999999999999985210 00 0011223444444444444456788999999999
Q ss_pred hhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHc--
Q 027438 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDAREV---TTAEGKALAEAQ-- 149 (223)
Q Consensus 76 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~D~~~~~~~---~~~~~~~~~~~~-- 149 (223)
|.......+..+|++++|+|+.+...-.. ..++..+... ++| +|+++||+|+.+..+. ..++...+....
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 98888888889999999999987543222 2333333322 567 7788999998753221 122344444443
Q ss_pred ---CCeEEEeccCCCCCH
Q 027438 150 ---GLFFMETSALDSSNV 164 (223)
Q Consensus 150 ---~~~~~~~Sa~~~~~i 164 (223)
+++++.+|+.++.++
T Consensus 233 ~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 233 PGDDIPIISGSALLALEA 250 (478)
T ss_pred CcCcceEEEEEccccccc
Confidence 567999999988543
No 242
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.68 E-value=7.3e-16 Score=128.36 Aligned_cols=150 Identities=23% Similarity=0.191 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCC-------------C------------------CcceeeeEEEEEEECCEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNS-------------K------------------STIGVEFQTQKMDINGKEV 63 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~-------------~------------------~~~~~~~~~~~~~~~~~~~ 63 (223)
++|+++|++++|||||+++|+...-.... . ..-|.+.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999743111000 0 0012223333334444456
Q ss_pred EEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH----
Q 027438 64 KAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTT---- 139 (223)
Q Consensus 64 ~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~---- 139 (223)
.+.||||||++.|.......+..+|++|+|+|+.....-.....|. .+... . ..++++++||+|+.+......
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~-~-~~~iivviNK~D~~~~~~~~~~~i~ 157 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLL-G-IRHVVLAVNKMDLVDYDEEVFENIK 157 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHc-C-CCcEEEEEEecccccchHHHHHHHH
Confidence 7889999999998777777889999999999998653222222221 11211 1 246889999999875322111
Q ss_pred HHHHHHHHHcC---CeEEEeccCCCCCHHHH
Q 027438 140 AEGKALAEAQG---LFFMETSALDSSNVTAA 167 (223)
Q Consensus 140 ~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~ 167 (223)
++...+....+ ++++++||.+|.|+++.
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 22223334333 46999999999999864
No 243
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.67 E-value=2e-15 Score=126.79 Aligned_cols=152 Identities=19% Similarity=0.147 Sum_probs=99.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcC--CCCC---------------------------CCCCcceeeeEEEEEEECCE
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARD--EFYP---------------------------NSKSTIGVEFQTQKMDINGK 61 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 61 (223)
..+.++|+++|+.++|||||+.+|+.. .... ......|.+.......+...
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 456799999999999999999999752 1110 00011134444444555666
Q ss_pred EEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHh---hH----HHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCC
Q 027438 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ---TF----DSIGRWLNELHTHSDMNVV-TILVGNKSDLKD 133 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~----~~~~~~~~~i~~~~~~~~p-iilv~nK~D~~~ 133 (223)
...+.|+||||+.+|.......+..+|++|+|+|..... .+ ...+.|. .+... ++| +|+++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~~---gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFTL---GVKQMIVCINKMDDKT 159 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHHc---CCCeEEEEEEcccccc
Confidence 678899999999999888888889999999999998742 11 1222222 22222 555 678999999532
Q ss_pred --Cccc----CHHHHHHHHHHc-----CCeEEEeccCCCCCHHH
Q 027438 134 --AREV----TTAEGKALAEAQ-----GLFFMETSALDSSNVTA 166 (223)
Q Consensus 134 --~~~~----~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~ 166 (223)
..+- ..++...+.... +++++++|+.+|.|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 1111 123333333333 35699999999999864
No 244
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.66 E-value=5.2e-16 Score=122.74 Aligned_cols=144 Identities=22% Similarity=0.192 Sum_probs=89.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCC----C-c-----------ceeeeEEEEEEECCEEEEEEEEeCCCcchhhcc
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSK----S-T-----------IGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV 79 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~----~-~-----------~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 79 (223)
+|+|+|++|+|||||+++|++..-..... . + .+.+.......+....+.+.+|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999997532111000 0 0 011111112222223467889999999888888
Q ss_pred hHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEE--Eec
Q 027438 80 TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFM--ETS 157 (223)
Q Consensus 80 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~S 157 (223)
+...++.+|++++|+|.++.........|. .+.. .+.|+++++||+|+.... ..+....+....+.+++ .+.
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~---~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ip 154 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWE-FADE---AGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQLP 154 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEEec
Confidence 888999999999999999865544333332 2222 268999999999987542 12223344444555433 334
Q ss_pred cCCCCCHH
Q 027438 158 ALDSSNVT 165 (223)
Q Consensus 158 a~~~~~i~ 165 (223)
..++.++.
T Consensus 155 ~~~~~~~~ 162 (268)
T cd04170 155 IGEGDDFK 162 (268)
T ss_pred ccCCCcee
Confidence 45544443
No 245
>PLN03127 Elongation factor Tu; Provisional
Probab=99.66 E-value=5.1e-15 Score=124.23 Aligned_cols=161 Identities=17% Similarity=0.148 Sum_probs=99.5
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHHcC------CCCCC--------CCCcceeeeEEEEEEECCEEEEEEEEeCCCcc
Q 027438 9 RAEDYLFKVVLIGDSAVGKSNLLARFARD------EFYPN--------SKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74 (223)
Q Consensus 9 ~~~~~~~~v~v~G~~~~GKSsli~~l~~~------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 74 (223)
....+.++|+++|++++|||||+++|.+. ..... .....|.+.......+.....++.++||||+.
T Consensus 56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred hcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCcc
Confidence 34567799999999999999999999732 10000 00112444455555565556678899999999
Q ss_pred hhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcccC---HHHHHHHHHHc-
Q 027438 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDAREVT---TAEGKALAEAQ- 149 (223)
Q Consensus 75 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~D~~~~~~~~---~~~~~~~~~~~- 149 (223)
.|.......+..+|++++|+|..+...-+. ...+..+.. .+.| +|+++||+|+.+..+.. .++...+....
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~ 211 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK 211 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence 887777677778999999999986432221 222222222 2577 57889999987532211 11223333322
Q ss_pred ----CCeEEEeccC---CCCC-------HHHHHHHHHH
Q 027438 150 ----GLFFMETSAL---DSSN-------VTAAFQTVVT 173 (223)
Q Consensus 150 ----~~~~~~~Sa~---~~~~-------i~~~~~~l~~ 173 (223)
.++++.+|+. ++.| +.++++.|..
T Consensus 212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~ 249 (447)
T PLN03127 212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDE 249 (447)
T ss_pred CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHH
Confidence 3678888875 4554 4455555443
No 246
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.66 E-value=1.4e-15 Score=119.79 Aligned_cols=114 Identities=20% Similarity=0.186 Sum_probs=77.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC--CCCC---C-----------CCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcc
Q 027438 16 KVVLIGDSAVGKSNLLARFARD--EFYP---N-----------SKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV 79 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~--~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 79 (223)
+|+|+|++++|||||+++|+.. .... . .....+.+.......+......+.+|||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 5899999999999999999742 1100 0 0011133333333333334577889999999888888
Q ss_pred hHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027438 80 TSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 80 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~ 133 (223)
+...++.+|++|+|+|..+...-.. ...+..+.. .++|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 8889999999999999987533222 222333332 2689999999999875
No 247
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.65 E-value=4.5e-15 Score=126.71 Aligned_cols=118 Identities=17% Similarity=0.188 Sum_probs=80.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHc--CCCCCC-------------C-----CCcceeeeEEEEEEECCEEEEEEEEeCC
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFAR--DEFYPN-------------S-----KSTIGVEFQTQKMDINGKEVKAQIWDTA 71 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~--~~~~~~-------------~-----~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 71 (223)
....+|+|+|++++|||||+++|+. +..... . ....|.++......+....+.+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4567999999999999999999974 111000 0 0011223333333444455788999999
Q ss_pred CcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027438 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 72 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~ 133 (223)
|+.++.......++.+|++|+|+|+++...- ....++..... .++|+++++||+|+..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRDG 145 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCcccc
Confidence 9999888777888999999999999875322 22333333322 3689999999999753
No 248
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.65 E-value=2e-15 Score=115.52 Aligned_cols=159 Identities=19% Similarity=0.285 Sum_probs=97.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEE-CCEEEEEEEEeCCCcchhhc-----chHhhhcCCcE
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI-NGKEVKAQIWDTAGQERFRA-----VTSAYYRGAVG 89 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~-----~~~~~~~~~d~ 89 (223)
||+++|+.+|||||..+.+.+... +......+.+.......+ ....+.+.+||+||+..+.. .....++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~-p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYS-PRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCC-chhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999998888876533 322333333333333333 12345788999999876433 46778899999
Q ss_pred EEEEEECCCHhh---HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--c----CHHHHHHHHHHcC---CeEEEec
Q 027438 90 ALLVYDISRRQT---FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE--V----TTAEGKALAEAQG---LFFMETS 157 (223)
Q Consensus 90 vi~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~--~----~~~~~~~~~~~~~---~~~~~~S 157 (223)
+|+|+|+.+.+- +..+...+..+.+..+ +..+.+.++|+|+..+.. . ..+...+.+...+ +.++.+|
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 999999995433 3334445555555554 788999999999875311 1 1222333444445 6689999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 027438 158 ALDSSNVTAAFQTVVTEIYN 177 (223)
Q Consensus 158 a~~~~~i~~~~~~l~~~~~~ 177 (223)
..+ +.+-+.+..+++.+..
T Consensus 159 I~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp TTS-THHHHHHHHHHHTTST
T ss_pred CcC-cHHHHHHHHHHHHHcc
Confidence 888 5777777777766543
No 249
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.64 E-value=8e-15 Score=110.70 Aligned_cols=158 Identities=20% Similarity=0.193 Sum_probs=93.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCC--cceeeeEEEEEEECCEEEEEEEEeCCCcchhhc-------c----hH
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKS--TIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA-------V----TS 81 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~----~~ 81 (223)
++|+|+|.+|+|||||+|+|++......... ..+...........+ ..+.++||||...... . ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 4799999999999999999998765433321 112222222333344 5678999999544311 1 11
Q ss_pred hhhcCCcEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc------CHHHHHHHHHHcCCeEE
Q 027438 82 AYYRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV------TTAEGKALAEAQGLFFM 154 (223)
Q Consensus 82 ~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~~ 154 (223)
.....+|++|+|+++.+.. ....+..++..+... ..-.+++++.|+.|......+ .....+.+.+.++-.++
T Consensus 79 ~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~-~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~ 157 (196)
T cd01852 79 LSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGE-KVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYV 157 (196)
T ss_pred hcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhCh-HhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEE
Confidence 1236789999999998721 122223333333211 112578999999997653221 11344555566666655
Q ss_pred Eec-----cCCCCCHHHHHHHHHHHH
Q 027438 155 ETS-----ALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 155 ~~S-----a~~~~~i~~~~~~l~~~~ 175 (223)
..+ +..+.++.++++.+-..+
T Consensus 158 ~f~~~~~~~~~~~q~~~Ll~~i~~~~ 183 (196)
T cd01852 158 AFNNKAKGEEQEQQVKELLAKVESMV 183 (196)
T ss_pred EEeCCCCcchhHHHHHHHHHHHHHHH
Confidence 544 345667777777766554
No 250
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.2e-14 Score=120.17 Aligned_cols=150 Identities=19% Similarity=0.188 Sum_probs=111.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEE
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 91 (223)
+.++-|-|+|+..-|||||+.+|..........-.++.......+..+ .+-.++|.|||||..|..++..-.+-+|+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 456778899999999999999999877655444333444444444444 3467889999999999999999999999999
Q ss_pred EEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-------HcC--CeEEEeccC
Q 027438 92 LVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAE-------AQG--LFFMETSAL 159 (223)
Q Consensus 92 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~-------~~~--~~~~~~Sa~ 159 (223)
+|+.++| +++.+. +......+.|+|+++||+|.++. ..+.+..-.. .+| ..++++||+
T Consensus 230 LVVAadDGVmpQT~Ea-------IkhAk~A~VpiVvAinKiDkp~a---~pekv~~eL~~~gi~~E~~GGdVQvipiSAl 299 (683)
T KOG1145|consen 230 LVVAADDGVMPQTLEA-------IKHAKSANVPIVVAINKIDKPGA---NPEKVKRELLSQGIVVEDLGGDVQVIPISAL 299 (683)
T ss_pred EEEEccCCccHhHHHH-------HHHHHhcCCCEEEEEeccCCCCC---CHHHHHHHHHHcCccHHHcCCceeEEEeecc
Confidence 9999998 444443 33334458999999999998754 2333333222 333 348999999
Q ss_pred CCCCHHHHHHHHH
Q 027438 160 DSSNVTAAFQTVV 172 (223)
Q Consensus 160 ~~~~i~~~~~~l~ 172 (223)
+|+|++.+-+++.
T Consensus 300 ~g~nl~~L~eail 312 (683)
T KOG1145|consen 300 TGENLDLLEEAIL 312 (683)
T ss_pred cCCChHHHHHHHH
Confidence 9999999998886
No 251
>PRK13351 elongation factor G; Reviewed
Probab=99.64 E-value=3.4e-15 Score=132.20 Aligned_cols=118 Identities=15% Similarity=0.169 Sum_probs=82.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCC--------CC-----CC---CcceeeeEEEEEEECCEEEEEEEEeCCCcch
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFY--------PN-----SK---STIGVEFQTQKMDINGKEVKAQIWDTAGQER 75 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~--------~~-----~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 75 (223)
+...+|+|+|+.++|||||+++|+...-. .. .. ...+.+.......+....+.+.+|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 45689999999999999999999853110 00 00 0011122222222333457889999999999
Q ss_pred hhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027438 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 76 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~ 133 (223)
+...+..+++.+|++|+|+|.++.........|.. +.. .++|+++++||+|+..
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~-~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQ-ADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHh---cCCCEEEEEECCCCCC
Confidence 98888999999999999999998766665555532 222 2689999999999864
No 252
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.64 E-value=4.8e-15 Score=116.46 Aligned_cols=165 Identities=22% Similarity=0.102 Sum_probs=110.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchh----hcchHh---hhcC
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF----RAVTSA---YYRG 86 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----~~~~~~---~~~~ 86 (223)
.--|.++|-|++|||||++++...+.-....++++....-..+.+ ...-.+.+-|+||.-+- ..+-.. .+..
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 345789999999999999999987665555555555555545554 23345779999993321 112222 3467
Q ss_pred CcEEEEEEECCCHhh---HHHHHHHHHHHhhcC--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeE-EEeccCC
Q 027438 87 AVGALLVYDISRRQT---FDSIGRWLNELHTHS--DMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFF-METSALD 160 (223)
Q Consensus 87 ~d~vi~v~d~~~~~s---~~~~~~~~~~i~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~Sa~~ 160 (223)
+.++++|+|++..+. .+.......++..+. -.++|.++|+||+|+....+.....+..+.+..+... +.+||.+
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t 317 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALT 317 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhc
Confidence 899999999986442 333334444443332 2368999999999976544444444555555555542 2299999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 027438 161 SSNVTAAFQTVVTEIYNIL 179 (223)
Q Consensus 161 ~~~i~~~~~~l~~~~~~~~ 179 (223)
++|++++...+.+.+.+..
T Consensus 318 ~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 318 REGLDELLRALAELLEETK 336 (369)
T ss_pred ccCHHHHHHHHHHHHHHhh
Confidence 9999999999988776665
No 253
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.64 E-value=4.5e-15 Score=130.16 Aligned_cols=154 Identities=21% Similarity=0.186 Sum_probs=96.8
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCC------------C-C------------------cceeeeEEEEEEE
Q 027438 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNS------------K-S------------------TIGVEFQTQKMDI 58 (223)
Q Consensus 10 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~------------~-~------------------~~~~~~~~~~~~~ 58 (223)
+....++|+++|++++|||||+++|+...-.... . . ..|.+.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 3455689999999999999999999864221110 0 0 0122222223333
Q ss_pred CCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC
Q 027438 59 NGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT 138 (223)
Q Consensus 59 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~ 138 (223)
......+.|+||||++.+.......+..+|++++|+|+.....-.....+ ..+.... ..++|+++||+|+.+..+..
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~-~~~~~~~--~~~iivvvNK~D~~~~~~~~ 176 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHS-FIASLLG--IRHVVLAVNKMDLVDYDQEV 176 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHH-HHHHHhC--CCeEEEEEEecccccchhHH
Confidence 34445778999999998876666678899999999999765322111111 1122221 25788999999987422111
Q ss_pred H----HHHHHHHHHcC---CeEEEeccCCCCCHHH
Q 027438 139 T----AEGKALAEAQG---LFFMETSALDSSNVTA 166 (223)
Q Consensus 139 ~----~~~~~~~~~~~---~~~~~~Sa~~~~~i~~ 166 (223)
. .+...+....+ ++++++||++|.|+.+
T Consensus 177 ~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 177 FDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1 22233334444 4599999999999985
No 254
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.64 E-value=9.8e-15 Score=117.20 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=54.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEE---------------------ECC-EEEEEEEEeCCCc-
Q 027438 17 VVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMD---------------------ING-KEVKAQIWDTAGQ- 73 (223)
Q Consensus 17 v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~l~D~~G~- 73 (223)
|+++|.|+||||||+++|++........+..+.+....... +++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998765432222222222221111 122 4477999999996
Q ss_pred ---chhhcchHh---hhcCCcEEEEEEECC
Q 027438 74 ---ERFRAVTSA---YYRGAVGALLVYDIS 97 (223)
Q Consensus 74 ---~~~~~~~~~---~~~~~d~vi~v~d~~ 97 (223)
+.+..+... .++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 333333333 489999999999997
No 255
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=2.8e-15 Score=114.69 Aligned_cols=162 Identities=17% Similarity=0.198 Sum_probs=106.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEE-EECCEEEEEEEEeCCCcch-------hhcchHh
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKM-DINGKEVKAQIWDTAGQER-------FRAVTSA 82 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~D~~G~~~-------~~~~~~~ 82 (223)
....++|+++|.+|+|||||||+|++++..+...-..+.+.....+ .+++ -.+.|||+||..+ +......
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 4567999999999999999999999876654433222332222222 2233 4678999999544 6667778
Q ss_pred hhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc--------ccC-------HHHHHHHHH
Q 027438 83 YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR--------EVT-------TAEGKALAE 147 (223)
Q Consensus 83 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~--------~~~-------~~~~~~~~~ 147 (223)
++...|.++++++..++.---....|...+..-. +.++++++|.+|..+.- ..+ .+.+....+
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~--~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDEDFLRDVIILGL--DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred HhhhccEEEEeccCCCccccCCHHHHHHHHHhcc--CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 8899999999999999753222233333332222 48999999999976531 111 111111111
Q ss_pred Hc--CCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027438 148 AQ--GLFFMETSALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 148 ~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 176 (223)
.. --|++..+...++|++.+...++..+-
T Consensus 192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 192 LFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 11 235788889999999999999987664
No 256
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.62 E-value=1.7e-14 Score=123.17 Aligned_cols=118 Identities=16% Similarity=0.194 Sum_probs=81.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHc--CCCCCC------------------CCCcceeeeEEEEEEECCEEEEEEEEeC
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFAR--DEFYPN------------------SKSTIGVEFQTQKMDINGKEVKAQIWDT 70 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~--~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 70 (223)
.....+|+|+|++++|||||+++|+. +..... .....+.++......++...+.+.+|||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 35578999999999999999999863 211100 0011133344444555556688999999
Q ss_pred CCcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027438 71 AGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132 (223)
Q Consensus 71 ~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~ 132 (223)
||+..+.......++.+|++|+|+|..+... .....++..... .+.|+++++||+|+.
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~ 145 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRD 145 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence 9998888777778899999999999987421 122344443332 368999999999974
No 257
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.62 E-value=7.1e-15 Score=123.26 Aligned_cols=163 Identities=16% Similarity=0.126 Sum_probs=103.1
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCC---CCC--Cc--ceeeeEE-----------EEEEECC-----------
Q 027438 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYP---NSK--ST--IGVEFQT-----------QKMDING----------- 60 (223)
Q Consensus 10 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~---~~~--~~--~~~~~~~-----------~~~~~~~----------- 60 (223)
..+..++|.++|+...|||||+.+|++..... +.. -| .|..... .....+.
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 34677999999999999999999999743211 110 01 1111100 0000000
Q ss_pred -----EEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027438 61 -----KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134 (223)
Q Consensus 61 -----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~ 134 (223)
....+.|+|+||++.|.......+..+|++++|+|+..+. .-+..+. +..+... . -.++|+|+||+|+.+.
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~eh-l~i~~~l-g-i~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEH-LAAVEIM-K-LKHIIILQNKIDLVKE 186 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHH-HHHHHHc-C-CCcEEEEEecccccCH
Confidence 0236789999999999888788888999999999998742 2122222 2222211 1 2468999999998753
Q ss_pred ccc--CHHHHHHHHHH---cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027438 135 REV--TTAEGKALAEA---QGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 135 ~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
... ..++.+++... .+.+++++||++|.|++.+++.|...+
T Consensus 187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 221 12233333322 356899999999999999998887533
No 258
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.62 E-value=2e-14 Score=99.34 Aligned_cols=106 Identities=24% Similarity=0.198 Sum_probs=68.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCC-CCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchh---------hcchHhhhc
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYP-NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF---------RAVTSAYYR 85 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---------~~~~~~~~~ 85 (223)
+|+|+|.+|+|||||+|+|++..... ...+..+.......+.+++..+ .++||||.... .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 68999999999999999999854322 2222222333334455666554 59999995331 111223348
Q ss_pred CCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 027438 86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNK 128 (223)
Q Consensus 86 ~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 128 (223)
.+|++++|+|..++.. +.....+..+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 8999999999887422 22233334442 37999999998
No 259
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.62 E-value=2.7e-14 Score=116.37 Aligned_cols=160 Identities=22% Similarity=0.254 Sum_probs=118.7
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHHcCC---------------CCCCCCCcceeeeEEEEEEE---CCEEEEEEEEeCC
Q 027438 10 AEDYLFKVVLIGDSAVGKSNLLARFARDE---------------FYPNSKSTIGVEFQTQKMDI---NGKEVKAQIWDTA 71 (223)
Q Consensus 10 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~ 71 (223)
+.....+..|+-+-..|||||..+|+... ...+....++..-....+.+ +|+.+.++++|||
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 34556788999999999999999997531 11122222223223333333 5688999999999
Q ss_pred CcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC
Q 027438 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGL 151 (223)
Q Consensus 72 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~ 151 (223)
||-+|.-.....+..|.+.++++|++..-.-+.+...|..+.. +.-+|-|+||+|++.++. ..-..++.+-.|+
T Consensus 85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adp--ervk~eIe~~iGi 158 (603)
T COG0481 85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADP--ERVKQEIEDIIGI 158 (603)
T ss_pred CccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCH--HHHHHHHHHHhCC
Confidence 9999988888888899999999999998777777777666654 567899999999986532 2223344455676
Q ss_pred e---EEEeccCCCCCHHHHHHHHHHHH
Q 027438 152 F---FMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 152 ~---~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
+ .+.+|||+|.|++++++.|++++
T Consensus 159 d~~dav~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 159 DASDAVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred CcchheeEecccCCCHHHHHHHHHhhC
Confidence 5 79999999999999999999876
No 260
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=3.2e-15 Score=122.20 Aligned_cols=167 Identities=21% Similarity=0.174 Sum_probs=109.7
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcch-hhcc--------hH
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-FRAV--------TS 81 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~--------~~ 81 (223)
-+..++|+|+|+|++|||||+|+|.........+.. |++.+.....++-+++.+.|.||+|..+ .... ..
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~-GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVP-GTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCC-CcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHH
Confidence 355699999999999999999999998776544433 7777777666666668888999999655 2221 12
Q ss_pred hhhcCCcEEEEEEECCC--HhhHHHHHHHHHHHhhc------CCCCCcEEEEEeCCCCCCC-cccCHHHHHHHHH-Hc-C
Q 027438 82 AYYRGAVGALLVYDISR--RQTFDSIGRWLNELHTH------SDMNVVTILVGNKSDLKDA-REVTTAEGKALAE-AQ-G 150 (223)
Q Consensus 82 ~~~~~~d~vi~v~d~~~--~~s~~~~~~~~~~i~~~------~~~~~piilv~nK~D~~~~-~~~~~~~~~~~~~-~~-~ 150 (223)
..+..+|++++|+|+.. -++-..+...+.....- ...+.+++++.||.|+... .+....-...... .. .
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~ 423 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSV 423 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcc
Confidence 24578999999999943 22222223333333211 1235889999999999764 2222211111111 11 1
Q ss_pred Ce-EEEeccCCCCCHHHHHHHHHHHHHHH
Q 027438 151 LF-FMETSALDSSNVTAAFQTVVTEIYNI 178 (223)
Q Consensus 151 ~~-~~~~Sa~~~~~i~~~~~~l~~~~~~~ 178 (223)
.+ ..++|+++++|++++.+.|...+...
T Consensus 424 ~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 424 FPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred cceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 22 56699999999999999988766443
No 261
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=1.6e-14 Score=116.26 Aligned_cols=190 Identities=21% Similarity=0.163 Sum_probs=124.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcC--CCCC---------------C------------CCCcceeeeEEEEEEECCE
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARD--EFYP---------------N------------SKSTIGVEFQTQKMDINGK 61 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~--~~~~---------------~------------~~~~~~~~~~~~~~~~~~~ 61 (223)
..+.++++++|++.+|||||+-+|+.. .+++ . ....-|.++......+.-.
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 456799999999999999999999752 1100 0 0011245666666667667
Q ss_pred EEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHh---hH--HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027438 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ---TF--DSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE 136 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~--~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~ 136 (223)
.+.++|+|+||+.+|...+..-..+||+.|+|+|..+.+ +| +...+....+.+... -..+|+++||+|..+.++
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~wde 162 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccccCH
Confidence 788999999999999988888889999999999998863 22 111222222322222 355788899999987544
Q ss_pred cCHHHHH----HHHHHcC-----CeEEEeccCCCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCCCCCceeeecC
Q 027438 137 VTTAEGK----ALAEAQG-----LFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFNGKTVVLEG 206 (223)
Q Consensus 137 ~~~~~~~----~~~~~~~-----~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (223)
-.++++. .+.+..+ ++|+++|+..|.|+.+.-+ ...++.-+-+.+..........+.++|+++-.
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~-----~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI 236 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSE-----NMPWYKGPTLLEALDQLEPPERPLDKPLRLPI 236 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCc-----CCcCccCChHHHHHhccCCCCCCCCCCeEeEe
Confidence 4444432 2333333 5699999999999876552 44455555555554555555555666665543
No 262
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.59 E-value=1.2e-14 Score=97.97 Aligned_cols=135 Identities=22% Similarity=0.250 Sum_probs=97.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC----cchhhcchHhhhcCCcEEE
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG----QERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----~~~~~~~~~~~~~~~d~vi 91 (223)
|++++|..|+|||||.++|.|... .+..+..++ ++... .+|||| +..+..........+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve-------~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVE-------FNDKG----DIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccceee-------ccCcc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 789999999999999999998643 222332222 22222 579999 4444444555668899999
Q ss_pred EEEECCCHhh-HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe-EEEeccCCCCCHHHHHH
Q 027438 92 LVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169 (223)
Q Consensus 92 ~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~ 169 (223)
+|..++++++ |.. .+.... .+|+|-|++|.|+.+. ...+..+.+...-|.. +|++|+.++.|+++++.
T Consensus 70 ~v~~and~~s~f~p------~f~~~~--~k~vIgvVTK~DLaed--~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~ 139 (148)
T COG4917 70 YVHAANDPESRFPP------GFLDIG--VKKVIGVVTKADLAED--ADISLVKRWLREAGAEPIFETSAVDNQGVEELVD 139 (148)
T ss_pred eeecccCccccCCc------cccccc--ccceEEEEecccccch--HhHHHHHHHHHHcCCcceEEEeccCcccHHHHHH
Confidence 9999999865 221 111112 3669999999999863 3456677777777875 99999999999999999
Q ss_pred HHHH
Q 027438 170 TVVT 173 (223)
Q Consensus 170 ~l~~ 173 (223)
.|..
T Consensus 140 ~L~~ 143 (148)
T COG4917 140 YLAS 143 (148)
T ss_pred HHHh
Confidence 8864
No 263
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.58 E-value=4e-14 Score=118.51 Aligned_cols=165 Identities=18% Similarity=0.350 Sum_probs=119.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEEC--CEEEEEEEEeCCCcchhhcchHhhhcCC--
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN--GKEVKAQIWDTAGQERFRAVTSAYYRGA-- 87 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~~-- 87 (223)
...-.|+|+|..++|||||+.+|.+.+ .+.++.+.+|....+.-+ +...++.+|...|...+..+....+...
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 345789999999999999999987643 234455666555544332 2345789999998777777766655532
Q ss_pred --cEEEEEEECCCHhh-HHHHHHHHHHHhhcC------------------------------------------------
Q 027438 88 --VGALLVYDISRRQT-FDSIGRWLNELHTHS------------------------------------------------ 116 (223)
Q Consensus 88 --d~vi~v~d~~~~~s-~~~~~~~~~~i~~~~------------------------------------------------ 116 (223)
-++|+|+|.+.|+. ++.+..|+..+..+.
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~ 179 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD 179 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence 36899999999987 556676665543310
Q ss_pred --------------CCCCcEEEEEeCCCCCCC----c-------ccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 027438 117 --------------DMNVVTILVGNKSDLKDA----R-------EVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 117 --------------~~~~piilv~nK~D~~~~----~-------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
+.++|++||++|+|.... . ++-.+-.+.+|..+|+.+|.+|++...+++.++..|
T Consensus 180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence 005899999999996421 1 122344778899999999999999999999999999
Q ss_pred HHHHHHHH
Q 027438 172 VTEIYNIL 179 (223)
Q Consensus 172 ~~~~~~~~ 179 (223)
.++++..-
T Consensus 260 ~h~l~~~~ 267 (472)
T PF05783_consen 260 LHRLYGFP 267 (472)
T ss_pred HHHhccCC
Confidence 99887543
No 264
>PRK12739 elongation factor G; Reviewed
Probab=99.58 E-value=6.7e-14 Score=123.84 Aligned_cols=117 Identities=19% Similarity=0.155 Sum_probs=79.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCC--CCC----------------CCCCcceeeeEEEEEEECCEEEEEEEEeCCC
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDE--FYP----------------NSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 72 (223)
.+...+|+|+|++++|||||+++|+... ... +....++.+.....+.. ....+.++||||
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG 82 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW--KGHRINIIDTPG 82 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE--CCEEEEEEcCCC
Confidence 3457899999999999999999997521 100 01112222222333333 446788999999
Q ss_pred cchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027438 73 QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 73 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~ 133 (223)
+..+...+...++.+|++|+|+|..+...-....-| ..+.. .+.|+++++||+|+..
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~-~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVW-RQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCCCCC
Confidence 988888888889999999999999876433322222 22222 2689999999999864
No 265
>PRK09866 hypothetical protein; Provisional
Probab=99.57 E-value=3.1e-13 Score=115.03 Aligned_cols=108 Identities=15% Similarity=0.121 Sum_probs=71.3
Q ss_pred EEEEEeCCCcchh-----hcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC
Q 027438 64 KAQIWDTAGQERF-----RAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT 138 (223)
Q Consensus 64 ~~~l~D~~G~~~~-----~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~ 138 (223)
.+.|+||||.... .......+..+|++++|+|.+...+... ...++.+... ....|+++|+||+|+.+.....
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCcccch
Confidence 4779999996442 2234457899999999999987543332 1223333332 2135999999999986432222
Q ss_pred HHHHHHHHH----HcC---CeEEEeccCCCCCHHHHHHHHHH
Q 027438 139 TAEGKALAE----AQG---LFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 139 ~~~~~~~~~----~~~---~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
.+....+.. ... ..+|++||++|.|++++++.|..
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 344444422 222 24999999999999999999875
No 266
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.56 E-value=5e-14 Score=124.69 Aligned_cols=120 Identities=19% Similarity=0.142 Sum_probs=82.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCC-----CCC-----------CcceeeeEEEEEEECCEEEEEEEEeCCCcc
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYP-----NSK-----------STIGVEFQTQKMDINGKEVKAQIWDTAGQE 74 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 74 (223)
.+...+|+|+|++++|||||+++|+...-.. ... ...|.+.......+......+.+|||||+.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 4456799999999999999999997421110 000 011223333333333344778899999999
Q ss_pred hhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027438 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134 (223)
Q Consensus 75 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~ 134 (223)
.+.......++.+|++|+|+|+.+........-| ..+.. .+.|+++++||+|+...
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR---YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCCEEEEEECCCCCCC
Confidence 8887888889999999999999886544433333 22322 26899999999998854
No 267
>PRK00007 elongation factor G; Reviewed
Probab=99.54 E-value=2.8e-13 Score=119.92 Aligned_cols=119 Identities=18% Similarity=0.158 Sum_probs=79.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHc--CCCCC---CCC-----------CcceeeeEEEEEEECCEEEEEEEEeCCCcc
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFAR--DEFYP---NSK-----------STIGVEFQTQKMDINGKEVKAQIWDTAGQE 74 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~--~~~~~---~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 74 (223)
.+...+|+|+|++++|||||+++|+. +.... ... ...+.+.......+......+.++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 45578999999999999999999974 11100 000 111223333222332234678899999998
Q ss_pred hhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027438 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 75 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~ 133 (223)
.+.......++.+|++|+|+|......-+...-|. .+.. .+.|+++++||+|+..
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~---~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADK---YKVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHH---cCCCEEEEEECCCCCC
Confidence 88777777889999999999988764434333332 2222 2688999999999864
No 268
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.54 E-value=3.5e-13 Score=111.36 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=56.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEE---------------------C-CEEEEEEEEeCCC
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI---------------------N-GKEVKAQIWDTAG 72 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~l~D~~G 72 (223)
++|+|+|.|+||||||+++|++........+..+.+.......+ + .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999987664433333232222222211 1 1346789999999
Q ss_pred cc----hhhcchHhh---hcCCcEEEEEEECC
Q 027438 73 QE----RFRAVTSAY---YRGAVGALLVYDIS 97 (223)
Q Consensus 73 ~~----~~~~~~~~~---~~~~d~vi~v~d~~ 97 (223)
.. ....+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 222333344 78999999999996
No 269
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.52 E-value=4e-14 Score=125.62 Aligned_cols=126 Identities=18% Similarity=0.149 Sum_probs=86.1
Q ss_pred cccccccCCeeeEEEEEcCCCCCHHHHHHHHHcC---------------CCCCC---CCCcceeeeEEEEEEECCEEEEE
Q 027438 4 YSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARD---------------EFYPN---SKSTIGVEFQTQKMDINGKEVKA 65 (223)
Q Consensus 4 ~~~~~~~~~~~~~v~v~G~~~~GKSsli~~l~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 65 (223)
..+.....+...+|+|+|+.++|||||+++|+.. .+.+. +..+.........+.+++..+.+
T Consensus 9 ~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i 88 (720)
T TIGR00490 9 IKELMWKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLI 88 (720)
T ss_pred HHHHhhCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEE
Confidence 3344445566789999999999999999999752 11110 11122222223333456677899
Q ss_pred EEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027438 66 QIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 66 ~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~ 133 (223)
.+|||||+.++.......++.+|++|+|+|+......+...-|.. .. ..+.|+++++||+|...
T Consensus 89 ~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~---~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 89 NLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-AL---KENVKPVLFINKVDRLI 152 (720)
T ss_pred EEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HH---HcCCCEEEEEEChhccc
Confidence 999999999988888889999999999999987533333223322 11 22578889999999864
No 270
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.51 E-value=1.7e-14 Score=105.99 Aligned_cols=117 Identities=24% Similarity=0.376 Sum_probs=70.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEE-CCEEEEEEEEeCCCcchhhcchHh---hhcCCcE
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI-NGKEVKAQIWDTAGQERFRAVTSA---YYRGAVG 89 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~---~~~~~d~ 89 (223)
...|+|+|+.|||||+|...|..+......... ... . ...+ ......+.++|+|||.+.+..... ++..+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n--~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENN--I-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEE--E-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCC--c-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 357899999999999999999998543322221 111 1 1112 223345779999999987664444 3788999
Q ss_pred EEEEEECCC-HhhHHHHHHHHHHH-h--hcCCCCCcEEEEEeCCCCCCC
Q 027438 90 ALLVYDISR-RQTFDSIGRWLNEL-H--THSDMNVVTILVGNKSDLKDA 134 (223)
Q Consensus 90 vi~v~d~~~-~~s~~~~~~~~~~i-~--~~~~~~~piilv~nK~D~~~~ 134 (223)
+|||+|.+. +..+..+..++-.+ . ......+|++|++||.|+..+
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 999999975 33454544443333 2 223457999999999998753
No 271
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.51 E-value=7.3e-13 Score=119.76 Aligned_cols=143 Identities=20% Similarity=0.199 Sum_probs=94.5
Q ss_pred CHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCE----------------EEEEEEEeCCCcchhhcchHhhhcCCcE
Q 027438 26 GKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGK----------------EVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 26 GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
+||||+.+|.+........-.++.......+..+.. .-.+.||||||++.+..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 499999999998776544433333333333333210 0127899999999998888888889999
Q ss_pred EEEEEECCC---HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC------------HHHHH-H---------
Q 027438 90 ALLVYDISR---RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT------------TAEGK-A--------- 144 (223)
Q Consensus 90 vi~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~------------~~~~~-~--------- 144 (223)
+++|+|+++ +.+++.+.. +.. .+.|+++|+||+|+....... .+.+. +
T Consensus 553 vlLVVDa~~Gi~~qT~e~I~~----lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~ 625 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAINI----LRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI 625 (1049)
T ss_pred EEEEEECcccCCHhHHHHHHH----HHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 999999987 555554432 222 258999999999986321100 01100 0
Q ss_pred --HHH--------------HcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027438 145 --LAE--------------AQGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 145 --~~~--------------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
++. ...++++++||++|+|+++++++|....
T Consensus 626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 111 1135789999999999999998876543
No 272
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.50 E-value=3.1e-13 Score=110.92 Aligned_cols=179 Identities=16% Similarity=0.141 Sum_probs=128.0
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchh----hcchHh--
Q 027438 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF----RAVTSA-- 82 (223)
Q Consensus 9 ~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----~~~~~~-- 82 (223)
..++....++|+|.|++|||||++.++.......+.++++...... +++-....++++||||.-+. .+..+.
T Consensus 163 sIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vG--H~dykYlrwQViDTPGILD~plEdrN~IEmqs 240 (620)
T KOG1490|consen 163 AIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVG--HLDYKYLRWQVIDTPGILDRPEEDRNIIEMQI 240 (620)
T ss_pred CCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhh--hhhhheeeeeecCCccccCcchhhhhHHHHHH
Confidence 4456678899999999999999999998777666555543333222 33446678889999993321 111111
Q ss_pred ---hhcCCcEEEEEEECCC--HhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHH---HHHHHHHcCCeEE
Q 027438 83 ---YYRGAVGALLVYDISR--RQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAE---GKALAEAQGLFFM 154 (223)
Q Consensus 83 ---~~~~~d~vi~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~ 154 (223)
...--.+|+++.|++. ..|...-.+.+..+...+. +.|.|+|+||+|......++.+. ...+...-+++++
T Consensus 241 ITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~ 319 (620)
T KOG1490|consen 241 ITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVV 319 (620)
T ss_pred HHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEE
Confidence 1122346788999987 4566666777777776665 68999999999998766655443 3333445568899
Q ss_pred EeccCCCCCHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 027438 155 ETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELK 190 (223)
Q Consensus 155 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 190 (223)
++|..+-+|+-++....+..++..+..+.+......
T Consensus 320 ~tS~~~eegVm~Vrt~ACe~LLa~RVE~Klks~~~~ 355 (620)
T KOG1490|consen 320 QTSCVQEEGVMDVRTTACEALLAARVEQKLKSESRV 355 (620)
T ss_pred EecccchhceeeHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999988876554333
No 273
>PRK12740 elongation factor G; Reviewed
Probab=99.49 E-value=7e-13 Score=117.34 Aligned_cols=110 Identities=20% Similarity=0.185 Sum_probs=73.7
Q ss_pred EcCCCCCHHHHHHHHHcCCCCCCC----CC------------cceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhh
Q 027438 20 IGDSAVGKSNLLARFARDEFYPNS----KS------------TIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAY 83 (223)
Q Consensus 20 ~G~~~~GKSsli~~l~~~~~~~~~----~~------------~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~ 83 (223)
+|++++|||||+++|+...-.... .. ..+.+.......+....+.+.+|||||+..+...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999643111000 00 01122222222232244788899999998887788888
Q ss_pred hcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027438 84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 84 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~ 133 (223)
+..+|++++++|.+..........|. .+.. .+.|+++|+||+|+..
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~---~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWR-QAEK---YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH---cCCCEEEEEECCCCCC
Confidence 99999999999999876555444343 2222 2689999999999763
No 274
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.49 E-value=6.6e-13 Score=105.02 Aligned_cols=122 Identities=13% Similarity=0.129 Sum_probs=72.0
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCC-CcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcch-------H
Q 027438 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVT-------S 81 (223)
Q Consensus 10 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~-------~ 81 (223)
.....++|+|+|.+|+||||++|+|++........ .+.+..........+ +..+.+|||||..+..... .
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik 111 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIK 111 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHH
Confidence 34667999999999999999999999876532211 221222222222334 4678899999966532211 1
Q ss_pred hhh--cCCcEEEEEEECCCH--hhH-HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027438 82 AYY--RGAVGALLVYDISRR--QTF-DSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134 (223)
Q Consensus 82 ~~~--~~~d~vi~v~d~~~~--~s~-~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~ 134 (223)
.++ ...|++++|..++.. ... ..+.+.+..+....- -.++|++.|+.|....
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~i-w~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDI-WRKSLVVLTHAQFSPP 168 (313)
T ss_pred HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhh-hccEEEEEECCccCCC
Confidence 111 269999999665532 111 122222222221111 2578999999997643
No 275
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.4e-13 Score=97.30 Aligned_cols=155 Identities=18% Similarity=0.236 Sum_probs=111.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEE
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 91 (223)
+..=|++++|-.++|||||++.|..+... ...||...+ .....+. ..+++-+|.+|+...+..|..++..+|+++
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHPT--SE~l~Ig--~m~ftt~DLGGH~qArr~wkdyf~~v~~iv 92 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELSIG--GMTFTTFDLGGHLQARRVWKDYFPQVDAIV 92 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHcccccc-ccCCCcCCC--hHHheec--CceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence 34568999999999999999999876543 223332221 2222333 467789999999999999999999999999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHH---HHHcC-----------C---eE
Q 027438 92 LVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKAL---AEAQG-----------L---FF 153 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~---~~~~~-----------~---~~ 153 (223)
+.+|+.+.+.|.+.+..+..+... .-...|+++.+||+|...+. +.++.+.. ....+ + .+
T Consensus 93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ev 170 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEV 170 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEE
Confidence 999999999998887777665433 23479999999999988642 33332221 11111 1 26
Q ss_pred EEeccCCCCCHHHHHHHHHH
Q 027438 154 METSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 154 ~~~Sa~~~~~i~~~~~~l~~ 173 (223)
|.||...+.+-.+.|.|+.+
T Consensus 171 fmcsi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 171 FMCSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred EEEEEEccCccceeeeehhh
Confidence 88898888887777777653
No 276
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.49 E-value=5.5e-13 Score=103.75 Aligned_cols=123 Identities=16% Similarity=0.180 Sum_probs=72.9
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCC-CcceeeeEEEEEEECCEEEEEEEEeCCCcchhh--c-c-----
Q 027438 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDINGKEVKAQIWDTAGQERFR--A-V----- 79 (223)
Q Consensus 9 ~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--~-~----- 79 (223)
+..+..++|+|+|.+|+|||||+|+|++........ ...+..........++ ..+.+|||||..... . .
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~ 103 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKIL 103 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHH
Confidence 455678999999999999999999999976543322 1112222222333333 567899999965431 0 1
Q ss_pred --hHhhh--cCCcEEEEEEECCCHh-hHHHHHHHHHHHhhcCCC--CCcEEEEEeCCCCCCC
Q 027438 80 --TSAYY--RGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDM--NVVTILVGNKSDLKDA 134 (223)
Q Consensus 80 --~~~~~--~~~d~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~--~~piilv~nK~D~~~~ 134 (223)
...++ ...+++++|..++... .... ...++.+...... -.++++|.||+|...+
T Consensus 104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 11222 2578888887666432 2221 1222223222211 2579999999998643
No 277
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.47 E-value=1.5e-12 Score=108.61 Aligned_cols=163 Identities=19% Similarity=0.296 Sum_probs=123.8
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcC
Q 027438 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86 (223)
Q Consensus 7 ~~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 86 (223)
.+......+++.++|+.++|||.|++.++++.+......+....+....+.+.+....+.+-|.+-. ....+...- ..
T Consensus 418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~ 495 (625)
T KOG1707|consen 418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AA 495 (625)
T ss_pred cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ce
Confidence 3445566799999999999999999999999887765555566666666667777777888888754 322222222 78
Q ss_pred CcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHHcCCe-EEEeccCCCCCH
Q 027438 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE-VTTAEGKALAEAQGLF-FMETSALDSSNV 164 (223)
Q Consensus 87 ~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i 164 (223)
+|+++++||.+++.+|+.+...++..... .+.|+++|++|+|+.+..+ ...+. .+++.+++++ ....|.+....
T Consensus 496 cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s- 571 (625)
T KOG1707|consen 496 CDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS- 571 (625)
T ss_pred eeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC-
Confidence 99999999999999999987776664433 4799999999999987643 33444 8899999997 67777775333
Q ss_pred HHHHHHHHHHH
Q 027438 165 TAAFQTVVTEI 175 (223)
Q Consensus 165 ~~~~~~l~~~~ 175 (223)
.++|..|+..+
T Consensus 572 ~~lf~kL~~~A 582 (625)
T KOG1707|consen 572 NELFIKLATMA 582 (625)
T ss_pred chHHHHHHHhh
Confidence 88898887655
No 278
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=5.5e-13 Score=113.73 Aligned_cols=169 Identities=20% Similarity=0.184 Sum_probs=114.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcc----eeeeEEEEE--------EECC----EEEEEEEEeCCCcchh
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTI----GVEFQTQKM--------DING----KEVKAQIWDTAGQERF 76 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~----~~~~~~~~~--------~~~~----~~~~~~l~D~~G~~~~ 76 (223)
..+-+||+|+..+|||-|+..+.+.++.......+ |.++....- .-++ .--.+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 34678999999999999999999877655443332 333332210 0000 1123679999999999
Q ss_pred hcchHhhhcCCcEEEEEEECCCH---hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc------cc-------C--
Q 027438 77 RAVTSAYYRGAVGALLVYDISRR---QTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR------EV-------T-- 138 (223)
Q Consensus 77 ~~~~~~~~~~~d~vi~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~------~~-------~-- 138 (223)
.+++......||+.|+|+|+.+. .+.++ +......+.|+||++||+|..-.. .+ .
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqtiES-------i~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~ 626 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIES-------INLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD 626 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchhHH-------HHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence 99999999999999999999873 44443 222223379999999999974210 00 0
Q ss_pred ---------HHHHHHHHH-HcC-------------CeEEEeccCCCCCHHHHHHHHHHHHHHHHhhhhhhhhh
Q 027438 139 ---------TAEGKALAE-AQG-------------LFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQE 188 (223)
Q Consensus 139 ---------~~~~~~~~~-~~~-------------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~ 188 (223)
..-+.+|+. .++ +.++++||.+|+||-+|+-+|++...+.+.+++.....
T Consensus 627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y~~e 699 (1064)
T KOG1144|consen 627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAYVDE 699 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 001111221 111 23578999999999999999999999999988865443
No 279
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.46 E-value=4.7e-13 Score=93.24 Aligned_cols=114 Identities=32% Similarity=0.391 Sum_probs=82.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCC-CcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 93 (223)
+||+++|+.|+|||+|+.++....+...+. ++.+ +........+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999998766643332 2222 222334456788999999
Q ss_pred EECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 027438 94 YDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVT 165 (223)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 165 (223)
|+.++..+++.+ |...+....+...|.++++||.|+.+...+..++. ..++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence 999999998776 87777655555688999999999854333333333 235678889999884
No 280
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.46 E-value=9.9e-13 Score=103.82 Aligned_cols=153 Identities=24% Similarity=0.212 Sum_probs=107.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCC----------CC---------------------CCcceeeeEEEEEEEC
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYP----------NS---------------------KSTIGVEFQTQKMDIN 59 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~----------~~---------------------~~~~~~~~~~~~~~~~ 59 (223)
....++++-+|...=||||||-+|+.+.... .+ ....|.+.......+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 4567999999999999999999998742210 00 0112455666666666
Q ss_pred CEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH
Q 027438 60 GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTT 139 (223)
Q Consensus 60 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~ 139 (223)
-....+.+-|||||+.|.+.+-.-...||+.|+++|+...- ..-.+-...+..... -.++|+++||+|+.+-.+-.+
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv--l~QTrRHs~I~sLLG-IrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV--LEQTRRHSFIASLLG-IRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh--HHHhHHHHHHHHHhC-CcEEEEEEeeecccccCHHHH
Confidence 66778899999999999998888888999999999995432 221222222322222 367888899999987544333
Q ss_pred H----HHHHHHHHcCCe---EEEeccCCCCCHHH
Q 027438 140 A----EGKALAEAQGLF---FMETSALDSSNVTA 166 (223)
Q Consensus 140 ~----~~~~~~~~~~~~---~~~~Sa~~~~~i~~ 166 (223)
+ +-..|+..+++. ++++||..|.|+-.
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 3 334567788765 89999999999754
No 281
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=9.8e-13 Score=96.96 Aligned_cols=155 Identities=19% Similarity=0.243 Sum_probs=99.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhc---CCcEE
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYR---GAVGA 90 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~---~~d~v 90 (223)
.-.|+++|+.+||||+|.-.|..+....... +.+.....+.+... ..+++|.||+.+.+.-...++. .+-++
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt---Siepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVT---SIEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeee---eeccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 3679999999999999999999874433222 22222333333322 2679999999998877777776 78899
Q ss_pred EEEEECCCH-hhHHHH-HHHHHHHhhc--CCCCCcEEEEEeCCCCCCCcc------------------------------
Q 027438 91 LLVYDISRR-QTFDSI-GRWLNELHTH--SDMNVVTILVGNKSDLKDARE------------------------------ 136 (223)
Q Consensus 91 i~v~d~~~~-~s~~~~-~~~~~~i~~~--~~~~~piilv~nK~D~~~~~~------------------------------ 136 (223)
+||+|...- .-...+ ...+..+... ...++|++++.||.|+..+..
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~ 192 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI 192 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 999997652 122333 3334444333 355788999999999853210
Q ss_pred ----cCHHHHHHH--HH--HcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027438 137 ----VTTAEGKAL--AE--AQGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 137 ----~~~~~~~~~--~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
....+..+| +. ...+.|.++|++++ +++++-+||.+.
T Consensus 193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 001111111 11 12345788899988 899999998764
No 282
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.44 E-value=1.7e-12 Score=99.07 Aligned_cols=160 Identities=19% Similarity=0.221 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCC--CcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcc----hH-------
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSK--STIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV----TS------- 81 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~----~~------- 81 (223)
++|+|+|.+|+||||++|.+++........ ...+.........+++ ..+.++||||..+.... ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999987765432 1222333344445666 55679999994332111 11
Q ss_pred hhhcCCcEEEEEEECCCHhhHH--HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC-------HHHHHHHHHHcCCe
Q 027438 82 AYYRGAVGALLVYDISRRQTFD--SIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT-------TAEGKALAEAQGLF 152 (223)
Q Consensus 82 ~~~~~~d~vi~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~ 152 (223)
....+.+++|+|+.+... +-. ....++..+....- -..++||.|..|......+. ....+.+.+..+-.
T Consensus 79 ~~~~g~ha~llVi~~~r~-t~~~~~~l~~l~~~FG~~~-~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRF-TEEDREVLELLQEIFGEEI-WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHHHHHHHHHHHHHCGGG-GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCcc-hHHHHHHHHHHHHHccHHH-HhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 123578999999999832 211 22333443322211 25688888988876543311 12244566677777
Q ss_pred EEEeccC------CCCCHHHHHHHHHHHHHHH
Q 027438 153 FMETSAL------DSSNVTAAFQTVVTEIYNI 178 (223)
Q Consensus 153 ~~~~Sa~------~~~~i~~~~~~l~~~~~~~ 178 (223)
|...+.+ ....+.++++.+-+.+.+.
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 7777666 2234555555554444333
No 283
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.43 E-value=1.6e-12 Score=101.21 Aligned_cols=96 Identities=18% Similarity=0.228 Sum_probs=78.9
Q ss_pred chhhcchHhhhcCCcEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCe
Q 027438 74 ERFRAVTSAYYRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLF 152 (223)
Q Consensus 74 ~~~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 152 (223)
+++..+...+++++|++++|+|++++. +++.+..|+..+.. .++|+++|+||+|+.+...+..+.+..+ ...+.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 667777888999999999999999887 89999999987654 3699999999999976444444444444 357889
Q ss_pred EEEeccCCCCCHHHHHHHHHH
Q 027438 153 FMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 153 ~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
++++||++|.|++++|+.+..
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999998864
No 284
>PTZ00258 GTP-binding protein; Provisional
Probab=99.42 E-value=4.8e-12 Score=103.77 Aligned_cols=87 Identities=16% Similarity=0.168 Sum_probs=60.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCE---------------EEEEEEEeCCCcch
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGK---------------EVKAQIWDTAGQER 75 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~ 75 (223)
....++|.|+|.|+||||||+|+|++........+.++.+.....+.+.+. ..++.++|+||...
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 355689999999999999999999887665544455454555555544432 23588999999432
Q ss_pred h-------hcchHhhhcCCcEEEEEEECC
Q 027438 76 F-------RAVTSAYYRGAVGALLVYDIS 97 (223)
Q Consensus 76 ~-------~~~~~~~~~~~d~vi~v~d~~ 97 (223)
. .......++.+|++++|+|..
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 112233468899999999973
No 285
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.41 E-value=2.8e-12 Score=114.24 Aligned_cols=123 Identities=19% Similarity=0.163 Sum_probs=82.2
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCC----------------Ccceeee--EEEEEEECCEEEEEEEE
Q 027438 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK----------------STIGVEF--QTQKMDINGKEVKAQIW 68 (223)
Q Consensus 7 ~~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~----------------~~~~~~~--~~~~~~~~~~~~~~~l~ 68 (223)
.....+...+|+|+|+.++|||||+++|+...-..... ..++... ....+..++..+.+.|+
T Consensus 13 ~~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~li 92 (731)
T PRK07560 13 LMKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLI 92 (731)
T ss_pred HhhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEE
Confidence 33445667899999999999999999997532110000 0001111 11122334456788999
Q ss_pred eCCCcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027438 69 DTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 69 D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~ 133 (223)
||||+.++.......++.+|++|+|+|...........-|..... . +.|+|+++||+|+..
T Consensus 93 DtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~-~---~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 93 DTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR-E---RVKPVLFINKVDRLI 153 (731)
T ss_pred cCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH-c---CCCeEEEEECchhhc
Confidence 999999998888888999999999999987544333333433222 1 467899999999763
No 286
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.41 E-value=4.9e-12 Score=95.43 Aligned_cols=102 Identities=13% Similarity=0.056 Sum_probs=63.5
Q ss_pred EEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHH
Q 027438 63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEG 142 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~ 142 (223)
....++++.|..-...... .-++.+|.|+|+.+..+... .+...+ ...-++++||+|+.+......+..
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence 3456788888322111111 12678999999987655321 111111 122389999999985322233333
Q ss_pred HHHHHH--cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027438 143 KALAEA--QGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 143 ~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
.+..+. .+.+++++||++|+|++++|++|.+.+
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 444333 457799999999999999999998654
No 287
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.40 E-value=1.1e-12 Score=118.31 Aligned_cols=122 Identities=19% Similarity=0.161 Sum_probs=83.8
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCC----------------CCcceeeeEEEEEEE------------
Q 027438 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNS----------------KSTIGVEFQTQKMDI------------ 58 (223)
Q Consensus 7 ~~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~------------ 58 (223)
.....+...+|+|+|+.++|||||+++|+...-.... ....+.........+
T Consensus 12 ~~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~ 91 (843)
T PLN00116 12 IMDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKG 91 (843)
T ss_pred HhhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccc
Confidence 3445667889999999999999999999854211000 001111111111211
Q ss_pred --CCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027438 59 --NGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132 (223)
Q Consensus 59 --~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~ 132 (223)
.+..+.+.++||||+.+|.......++.+|++|+|+|+...-......-|.... ..++|+|+++||+|+.
T Consensus 92 ~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~----~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 92 ERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPVLTVNKMDRC 163 (843)
T ss_pred ccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHH----HCCCCEEEEEECCccc
Confidence 223677899999999999888888899999999999999865444444443332 2268999999999987
No 288
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=6.5e-12 Score=104.95 Aligned_cols=202 Identities=21% Similarity=0.137 Sum_probs=129.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCC-----------------------------CCCCCCcceeeeEEEEEEECCE
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEF-----------------------------YPNSKSTIGVEFQTQKMDINGK 61 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 61 (223)
....+..+++|+..+|||||+.+|+..-- .......-|++.......++-.
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 34679999999999999999999865210 0011122356677777777777
Q ss_pred EEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHh---hHHHH--HHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027438 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ---TFDSI--GRWLNELHTHSDMNVVTILVGNKSDLKDARE 136 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~~~~--~~~~~~i~~~~~~~~piilv~nK~D~~~~~~ 136 (223)
...++|+|+||+..|...+..-...+|+.|+|+|.+... +|+.. .+.+..+.+... -..+||++||+|+.+..+
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-ISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-cceEEEEeecccccCccH
Confidence 788999999999999999988889999999999998632 23321 122222333332 356788899999988665
Q ss_pred cCHHHHHH----HH-HHcC-----CeEEEeccCCCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCCCCCceeeecC
Q 027438 137 VTTAEGKA----LA-EAQG-----LFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQKDSSSFNGKTVVLEG 206 (223)
Q Consensus 137 ~~~~~~~~----~~-~~~~-----~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (223)
-..+++.. |. +..| +.|++||+.+|+|+-..-.. ..+.+++.-+-+...-.+-.....+-.+|++.-.
T Consensus 333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~--~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~ltI 410 (603)
T KOG0458|consen 333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQE--NELSQWYKGPTLLSQIDSFKIPERPIDKPLRLTI 410 (603)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccc--hhhhhhhcCChHHHHHhhccCCCCcccCCeEEEh
Confidence 55555443 33 3334 35999999999997654211 1455555555544444443333333455655554
Q ss_pred CCcccccCC
Q 027438 207 EKKEADAEP 215 (223)
Q Consensus 207 ~~~~~~~~~ 215 (223)
..-....+.
T Consensus 411 sdi~~~~~~ 419 (603)
T KOG0458|consen 411 SDIYPLPSS 419 (603)
T ss_pred hheeecCCC
Confidence 444443333
No 289
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.38 E-value=2.8e-11 Score=97.73 Aligned_cols=118 Identities=19% Similarity=0.216 Sum_probs=82.9
Q ss_pred EEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCH----------hhHHHHHHHHHHHhh-cCCCCCcEEEEEeCC
Q 027438 61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRR----------QTFDSIGRWLNELHT-HSDMNVVTILVGNKS 129 (223)
Q Consensus 61 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~~~~i~~-~~~~~~piilv~nK~ 129 (223)
..+.+.+||++|+...+..|.+++.+++++|+|+|+++. ..+......+..+.. ..-.+.|+++++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 346788999999999999999999999999999999873 233333333333322 222479999999999
Q ss_pred CCCCC----------------cccCHHHHHHHHHH----------cCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027438 130 DLKDA----------------REVTTAEGKALAEA----------QGLFFMETSALDSSNVTAAFQTVVTEIYNI 178 (223)
Q Consensus 130 D~~~~----------------~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 178 (223)
|+.++ .....+.+..+... ..+....++|.+-.+++.+|+.+...+...
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 96331 12234444444321 223456789999999999999998877654
No 290
>PRK13768 GTPase; Provisional
Probab=99.37 E-value=4.3e-12 Score=99.33 Aligned_cols=109 Identities=18% Similarity=0.168 Sum_probs=68.5
Q ss_pred EEEEEeCCCcchh---hcchHhhhc---C--CcEEEEEEECCCHhhHHH-HH-HHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027438 64 KAQIWDTAGQERF---RAVTSAYYR---G--AVGALLVYDISRRQTFDS-IG-RWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 64 ~~~l~D~~G~~~~---~~~~~~~~~---~--~d~vi~v~d~~~~~s~~~-~~-~~~~~i~~~~~~~~piilv~nK~D~~~ 133 (223)
.+.+||+||+.+. ...+..+.+ . ++++++++|......... .. .|+...... ..+.|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 5779999997663 223322222 2 899999999976433222 22 232222111 23699999999999875
Q ss_pred CcccCHHHHHH----------------------------HHHHcC--CeEEEeccCCCCCHHHHHHHHHHHH
Q 027438 134 AREVTTAEGKA----------------------------LAEAQG--LFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 134 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
..+. ++... .....+ .+++++|++++.|+++++++|.+.+
T Consensus 177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 4322 11111 112223 4689999999999999999998765
No 291
>PTZ00416 elongation factor 2; Provisional
Probab=99.37 E-value=2.3e-12 Score=116.01 Aligned_cols=120 Identities=18% Similarity=0.182 Sum_probs=80.4
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCC-CC-------------cceeeeE--EEEEEEC--------CEEEE
Q 027438 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNS-KS-------------TIGVEFQ--TQKMDIN--------GKEVK 64 (223)
Q Consensus 9 ~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~-~~-------------~~~~~~~--~~~~~~~--------~~~~~ 64 (223)
+..+...+|+|+|+.++|||||+++|+...-.... .. .-+.+.. .....+. +..+.
T Consensus 14 ~~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~ 93 (836)
T PTZ00416 14 DNPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFL 93 (836)
T ss_pred hCccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceE
Confidence 33566779999999999999999999863111000 00 0011111 1122222 22567
Q ss_pred EEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027438 65 AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132 (223)
Q Consensus 65 ~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~ 132 (223)
+.|+||||+.++.......++.+|++|+|+|+...-.-....-| ..+.. .+.|+++++||+|+.
T Consensus 94 i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 94 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH---cCCCEEEEEEChhhh
Confidence 89999999999888888889999999999999885443333333 22222 258999999999986
No 292
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.33 E-value=2.9e-11 Score=92.08 Aligned_cols=150 Identities=12% Similarity=0.154 Sum_probs=84.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCC-C-----------CCCC----cceeeeEEEEEEECC--------------
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFY-P-----------NSKS----TIGVEFQTQKMDING-------------- 60 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~-~-----------~~~~----~~~~~~~~~~~~~~~-------------- 60 (223)
......|.|+|+.|+|||||++++...... . ..+. ..+.. .... .++
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~--~~~l-~~gcic~~~~~~~~~~l 95 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAP--AIQI-NTGKECHLDAHMVAHAL 95 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCc--EEEE-cCCCcccCChHHHHHHH
Confidence 345788999999999999999998753110 0 0000 00000 0000 000
Q ss_pred -----EEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027438 61 -----KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135 (223)
Q Consensus 61 -----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~ 135 (223)
....+.++|+.|.-.. ...+....+..+.++|+.+..... .... .. ...|.++++||+|+....
T Consensus 96 ~~~~~~~~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~~d~~~--~~~~-~~-----~~~a~iiv~NK~Dl~~~~ 164 (207)
T TIGR00073 96 EDLPLDDIDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTEGDDKP--LKYP-GM-----FKEADLIVINKADLAEAV 164 (207)
T ss_pred HHhccCCCCEEEEecCCCcCC---CcccccccCeEEEEEecCcccchh--hhhH-hH-----HhhCCEEEEEHHHccccc
Confidence 1235667777772110 011112345556777877543211 0000 11 146789999999997533
Q ss_pred ccCHHHHHHHHHHc--CCeEEEeccCCCCCHHHHHHHHHHH
Q 027438 136 EVTTAEGKALAEAQ--GLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 136 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
....++.....+.. .++++.+||+++.|++++++++.+.
T Consensus 165 ~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 165 GFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 22333444444443 3789999999999999999999764
No 293
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.32 E-value=5.3e-11 Score=96.61 Aligned_cols=83 Identities=17% Similarity=0.115 Sum_probs=57.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEE---------------EEEEEEeCCCcchh---
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKE---------------VKAQIWDTAGQERF--- 76 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~~~--- 76 (223)
++|.|+|.|+||||||+|+|++........+.++.+.....+.+.+.. ..+.++|+||....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999877443333444444444444444321 25889999994331
Q ss_pred ----hcchHhhhcCCcEEEEEEECC
Q 027438 77 ----RAVTSAYYRGAVGALLVYDIS 97 (223)
Q Consensus 77 ----~~~~~~~~~~~d~vi~v~d~~ 97 (223)
.......++.+|++++|+|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 112223458999999999984
No 294
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.32 E-value=3.5e-11 Score=88.49 Aligned_cols=62 Identities=24% Similarity=0.236 Sum_probs=45.3
Q ss_pred EEEEeCCCcch----hhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q 027438 65 AQIWDTAGQER----FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKS 129 (223)
Q Consensus 65 ~~l~D~~G~~~----~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 129 (223)
+.|+||||... ...++..++..+|++|+|.+.++..+-.....+.+..... ...+++|.||.
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 78999999543 3356777889999999999999976656556666565444 34488999984
No 295
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.32 E-value=5.7e-11 Score=95.77 Aligned_cols=104 Identities=15% Similarity=0.111 Sum_probs=66.2
Q ss_pred EEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CH
Q 027438 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV--TT 139 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~--~~ 139 (223)
++.+.|+||+|...... .....+|.++++.+...+..+..+.. .+. ...-++|+||+|+...... ..
T Consensus 148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~---gi~-----E~aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKK---GIM-----ELADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHh---hhh-----hhhheEEeehhcccchhHHHHHH
Confidence 46688999999663222 24667999999977555544433221 111 2234899999998753211 11
Q ss_pred HHHHHHHHH-------cCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027438 140 AEGKALAEA-------QGLFFMETSALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 140 ~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 176 (223)
.+....... +..+++.+||+++.|++++++.|.+.+.
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 222222221 2257999999999999999999988653
No 296
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.31 E-value=1e-10 Score=89.75 Aligned_cols=169 Identities=18% Similarity=0.188 Sum_probs=95.5
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCC-------CCcceeeeEEEEEEE------------------------
Q 027438 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNS-------KSTIGVEFQTQKMDI------------------------ 58 (223)
Q Consensus 10 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~-------~~~~~~~~~~~~~~~------------------------ 58 (223)
..+.++-|+++|..|||||||+++|...-..... +|....-.+...+.+
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 4566788999999999999999999764221111 111000000000000
Q ss_pred -----------------CCEEEEEEEEeCCCcch-h-----hcchHhhh--cCCcEEEEEEECCC---HhhHHHHHHHHH
Q 027438 59 -----------------NGKEVKAQIWDTAGQER-F-----RAVTSAYY--RGAVGALLVYDISR---RQTFDSIGRWLN 110 (223)
Q Consensus 59 -----------------~~~~~~~~l~D~~G~~~-~-----~~~~~~~~--~~~d~vi~v~d~~~---~~s~~~~~~~~~ 110 (223)
....+...++||||+-+ | +.+....+ ...-++++++|... +.+|=+-.-+.-
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAc 174 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYAC 174 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHH
Confidence 02234577999999544 1 22333322 34566777887654 434332222222
Q ss_pred HHhhcCCCCCcEEEEEeCCCCCCCccc--------CHHHHHH-------------HH-----HHcCCeEEEeccCCCCCH
Q 027438 111 ELHTHSDMNVVTILVGNKSDLKDAREV--------TTAEGKA-------------LA-----EAQGLFFMETSALDSSNV 164 (223)
Q Consensus 111 ~i~~~~~~~~piilv~nK~D~~~~~~~--------~~~~~~~-------------~~-----~~~~~~~~~~Sa~~~~~i 164 (223)
.+. ...+.|+|++.||+|+...... ..+++.. ++ -..++..+-+|+.+|.|+
T Consensus 175 Sil--yktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ 252 (366)
T KOG1532|consen 175 SIL--YKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF 252 (366)
T ss_pred HHH--HhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence 222 2337999999999998763110 0111111 11 122456788999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 027438 165 TAAFQTVVTEIYNILS 180 (223)
Q Consensus 165 ~~~~~~l~~~~~~~~~ 180 (223)
+++|..+-+.+-+...
T Consensus 253 ddf~~av~~~vdEy~~ 268 (366)
T KOG1532|consen 253 DDFFTAVDESVDEYEE 268 (366)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999776655443
No 297
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.30 E-value=1e-10 Score=95.30 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=81.3
Q ss_pred EEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCH----------hhHHHHHHHHHHHhh-cCCCCCcEEEEEeCCCC
Q 027438 63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRR----------QTFDSIGRWLNELHT-HSDMNVVTILVGNKSDL 131 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~~~~i~~-~~~~~~piilv~nK~D~ 131 (223)
+.+.+||++|+...+..|.+++.+++++|+|+|+++. ..+......+..+.. ..-.+.|+++++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 5578999999999999999999999999999999973 234444344444332 22346999999999997
Q ss_pred CCC---------------cccCHHHHHHHHH-----Hc------CCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 027438 132 KDA---------------REVTTAEGKALAE-----AQ------GLFFMETSALDSSNVTAAFQTVVTEIYNIL 179 (223)
Q Consensus 132 ~~~---------------~~~~~~~~~~~~~-----~~------~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 179 (223)
... .....+.+..+.. .. .+....++|.+-.++..+|+.+...+....
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 431 0012334443321 11 234577889999999999999887776543
No 298
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.30 E-value=4.1e-11 Score=97.93 Aligned_cols=159 Identities=20% Similarity=0.255 Sum_probs=108.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCC--CCCCC------------CCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhc
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDE--FYPNS------------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA 78 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 78 (223)
...+|+|+-+...|||||++.|+... +.... ...-|.+.-.+.--+..+.+.+.++|||||.+|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 45689999999999999999997531 11100 01123444444444555668899999999999999
Q ss_pred chHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHH-------HcC
Q 027438 79 VTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE-VTTAEGKALAE-------AQG 150 (223)
Q Consensus 79 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~-------~~~ 150 (223)
..+..+.=.|++++++|+.+.-- .+-+. .+.+....+.+.|+|+||+|...++. .-.++..++.. +++
T Consensus 84 EVERvl~MVDgvlLlVDA~EGpM-PQTrF---VlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGPM-PQTRF---VLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCCC-Cchhh---hHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence 99999999999999999987311 11111 12222333788899999999987643 23445555543 455
Q ss_pred CeEEEeccCCC----------CCHHHHHHHHHHHH
Q 027438 151 LFFMETSALDS----------SNVTAAFQTVVTEI 175 (223)
Q Consensus 151 ~~~~~~Sa~~~----------~~i~~~~~~l~~~~ 175 (223)
.|++..|+..| .++..+|+.|++++
T Consensus 160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred CcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 67888888755 35777777777655
No 299
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.29 E-value=2.3e-11 Score=98.77 Aligned_cols=163 Identities=15% Similarity=0.165 Sum_probs=81.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccee---eeEEEEEEECCEEEEEEEEeCCCcchhhcchHhh----
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGV---EFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAY---- 83 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~---- 83 (223)
....++|+|+|.+|+|||||||+|.|-.-.......+|+ +........ ...-.+.+||.||.....-....|
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence 356799999999999999999999874333222222222 222222222 222247799999965433333333
Q ss_pred -hcCCcEEEEEEECCCHhhHHHHHHHH-HHHhhcCCCCCcEEEEEeCCCCC-------CCcccC----HHHHHHHHH---
Q 027438 84 -YRGAVGALLVYDISRRQTFDSIGRWL-NELHTHSDMNVVTILVGNKSDLK-------DAREVT----TAEGKALAE--- 147 (223)
Q Consensus 84 -~~~~d~vi~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~piilv~nK~D~~-------~~~~~~----~~~~~~~~~--- 147 (223)
+..-|.+|++.+-. |....-|+ ..+... ++|+++|-||+|.. .++... .+++++-+.
T Consensus 111 ~~~~yD~fiii~s~r----f~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L 183 (376)
T PF05049_consen 111 KFYRYDFFIIISSER----FTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL 183 (376)
T ss_dssp TGGG-SEEEEEESSS------HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred cccccCEEEEEeCCC----CchhhHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence 45688888777643 33333333 333332 78999999999951 111222 233333332
Q ss_pred -HcCC---eEEEeccCCC--CCHHHHHHHHHHHHHHHHhh
Q 027438 148 -AQGL---FFMETSALDS--SNVTAAFQTVVTEIYNILSR 181 (223)
Q Consensus 148 -~~~~---~~~~~Sa~~~--~~i~~~~~~l~~~~~~~~~~ 181 (223)
..++ ++|-+|+.+- .++..+.+.|...+-..+..
T Consensus 184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~ 223 (376)
T PF05049_consen 184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH 223 (376)
T ss_dssp HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence 2233 4899998765 55777887777666554443
No 300
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.29 E-value=2.7e-10 Score=86.42 Aligned_cols=106 Identities=22% Similarity=0.191 Sum_probs=75.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcch-------hhcchHhhhcC
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-------FRAVTSAYYRG 86 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~ 86 (223)
--+|+++|-|.+|||||+..++..........+++.+..+..+.+++ ..+++.|.||.-. ..+...+..+.
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeec
Confidence 47999999999999999999997665555555556666666777776 4567999999433 23344556689
Q ss_pred CcEEEEEEECCCHhhH-HHHHHHHHHHhhcCCCCCc
Q 027438 87 AVGALLVYDISRRQTF-DSIGRWLNELHTHSDMNVV 121 (223)
Q Consensus 87 ~d~vi~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p 121 (223)
+|.++.|+|++..+.- +-+.+.+..+.-..+..+|
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~P 175 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKP 175 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCC
Confidence 9999999999986653 3456666666544443333
No 301
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.28 E-value=1.1e-10 Score=89.93 Aligned_cols=140 Identities=20% Similarity=0.183 Sum_probs=82.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEE
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 91 (223)
.....|+|+|.+|+|||||++.+.+...........|. ..+ .......+.++||||.- .. .....+.+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--HH-HHHHHHhcCEEE
Confidence 45678999999999999999999874221111111121 111 12245567899999853 22 233457899999
Q ss_pred EEEECCCHhhHHHHHHHHHHHhhcCCCCCcE-EEEEeCCCCCCCccc---CHHHHHH-HHH--HcCCeEEEeccCCCCC
Q 027438 92 LVYDISRRQTFDSIGRWLNELHTHSDMNVVT-ILVGNKSDLKDAREV---TTAEGKA-LAE--AQGLFFMETSALDSSN 163 (223)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~D~~~~~~~---~~~~~~~-~~~--~~~~~~~~~Sa~~~~~ 163 (223)
+++|.+....... ...+..+... +.|. ++|+||+|+.+.... ...+.+. +.. ..+.+++.+||+++-.
T Consensus 109 lviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 109 LLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred EEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 9999986443222 2223333222 4664 459999998643211 1112222 221 2346799999998843
No 302
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.28 E-value=1e-10 Score=95.23 Aligned_cols=162 Identities=18% Similarity=0.225 Sum_probs=97.6
Q ss_pred cccccccCCeeeEEEEEcCCCCCHHHHHHHHHcC----CCCC----------CCCCcce---eeeEEE-------EEEE-
Q 027438 4 YSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARD----EFYP----------NSKSTIG---VEFQTQ-------KMDI- 58 (223)
Q Consensus 4 ~~~~~~~~~~~~~v~v~G~~~~GKSsli~~l~~~----~~~~----------~~~~~~~---~~~~~~-------~~~~- 58 (223)
|.+-..+..-.+-|.|+|+.++|||||+++|.+. .... ......| .+..++ .+..
T Consensus 7 ykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~ 86 (492)
T TIGR02836 7 YKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININ 86 (492)
T ss_pred HHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEecc
Confidence 3344456677899999999999999999999987 3320 1111122 222222 2222
Q ss_pred CCEEEEEEEEeCCCcchhhc-------c----------------------hHhhhc-CCcEEEEEE-ECC----CHhh-H
Q 027438 59 NGKEVKAQIWDTAGQERFRA-------V----------------------TSAYYR-GAVGALLVY-DIS----RRQT-F 102 (223)
Q Consensus 59 ~~~~~~~~l~D~~G~~~~~~-------~----------------------~~~~~~-~~d~vi~v~-d~~----~~~s-~ 102 (223)
++....+.++||+|...-.. - +...+. ++|+.|+|. |.+ .++. .
T Consensus 87 ~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~ 166 (492)
T TIGR02836 87 EGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYV 166 (492)
T ss_pred CCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccch
Confidence 34456788999999222111 1 233445 899999888 664 1122 2
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccC--CCCCHHHHHHH
Q 027438 103 DSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSAL--DSSNVTAAFQT 170 (223)
Q Consensus 103 ~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~i~~~~~~ 170 (223)
+.-..|+..+... ++|+++|+|+.|.... -..+.+..+...++++++.+|+. +-..+..+++.
T Consensus 167 ~aEe~~i~eLk~~---~kPfiivlN~~dp~~~--et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~ 231 (492)
T TIGR02836 167 EAEERVIEELKEL---NKPFIILLNSTHPYHP--ETEALRQELEEKYDVPVLAMDVESMRESDILSVLEE 231 (492)
T ss_pred HHHHHHHHHHHhc---CCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHH
Confidence 2335566666554 7999999999994321 14455556667788887666653 33445444443
No 303
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.4e-10 Score=91.56 Aligned_cols=161 Identities=14% Similarity=0.162 Sum_probs=94.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCC----CCCCCC---CcceeeeEEEEEEE-------CCEEEEEEEEeCCCcchh
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDE----FYPNSK---STIGVEFQTQKMDI-------NGKEVKAQIWDTAGQERF 76 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~----~~~~~~---~~~~~~~~~~~~~~-------~~~~~~~~l~D~~G~~~~ 76 (223)
.+..+++.|+|+..||||||.++|.... ++.... ..++.+..-..+.+ .++..++.++|+||+...
T Consensus 4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL 83 (522)
T KOG0461|consen 4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL 83 (522)
T ss_pred CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence 3445999999999999999999997532 211111 11111111111111 356678899999999886
Q ss_pred hcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc-ccC--HHHHHHHHHHc----
Q 027438 77 RAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR-EVT--TAEGKALAEAQ---- 149 (223)
Q Consensus 77 ~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~-~~~--~~~~~~~~~~~---- 149 (223)
-+.......-.|..++|+|+.....-+..+-. .+.... -...|+|+||+|...+. ..+ ...++.+.+.+
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcL--iig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECL--IIGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchhh--hhhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence 66555555668889999999875332222221 122222 23467777888765432 111 22233333222
Q ss_pred ---CCeEEEeccCCC----CCHHHHHHHHHHHH
Q 027438 150 ---GLFFMETSALDS----SNVTAAFQTVVTEI 175 (223)
Q Consensus 150 ---~~~~~~~Sa~~~----~~i~~~~~~l~~~~ 175 (223)
+.|++++||+.| +++.++.+.|.+++
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred cCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 368999999999 55555555554433
No 304
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.26 E-value=1e-12 Score=101.64 Aligned_cols=111 Identities=17% Similarity=0.173 Sum_probs=58.0
Q ss_pred EEEEEeCCCcchhhcchHhhh--------cCCcEEEEEEECCCHhh-HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027438 64 KAQIWDTAGQERFRAVTSAYY--------RGAVGALLVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134 (223)
Q Consensus 64 ~~~l~D~~G~~~~~~~~~~~~--------~~~d~vi~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~ 134 (223)
...|+||||+.+....+.... ...-++++++|.....+ ...+..++..+......+.|.|.|+||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 467999999888655554443 34557888888764322 222333333332222237999999999999862
Q ss_pred c------------cc-------CHHHHHHHHHHc---C-C-eEEEeccCCCCCHHHHHHHHHHH
Q 027438 135 R------------EV-------TTAEGKALAEAQ---G-L-FFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 135 ~------------~~-------~~~~~~~~~~~~---~-~-~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
. .. .....+.++... + . .++.+|+++++|+.+++..+-+.
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 1 00 011112222222 2 3 58999999999999999887654
No 305
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.25 E-value=1.3e-10 Score=92.15 Aligned_cols=139 Identities=17% Similarity=0.245 Sum_probs=77.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCCCCCC----------CCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhc---c
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNS----------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA---V 79 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---~ 79 (223)
..++|+|+|.+|+|||||||.|++....... ..+.........+.-++..+.+.++||||...... .
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 3689999999999999999999986543321 12223333344445577889999999999222100 0
Q ss_pred hH---h--------hh-------------cCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027438 80 TS---A--------YY-------------RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135 (223)
Q Consensus 80 ~~---~--------~~-------------~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~ 135 (223)
+. . ++ ...|+++++++.+...--+.=...++.+.. ..++|-|+.|+|.....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~----~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK----RVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT----TSEEEEEESTGGGS-HH
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc----cccEEeEEecccccCHH
Confidence 00 0 00 357899999998763211111234555544 47799999999986533
Q ss_pred ccC--HHHHHHHHHHcCCeEEE
Q 027438 136 EVT--TAEGKALAEAQGLFFME 155 (223)
Q Consensus 136 ~~~--~~~~~~~~~~~~~~~~~ 155 (223)
++. ...+..-....++.+|.
T Consensus 159 el~~~k~~i~~~l~~~~I~~f~ 180 (281)
T PF00735_consen 159 ELQAFKQRIREDLEENNIKIFD 180 (281)
T ss_dssp HHHHHHHHHHHHHHHTT--S--
T ss_pred HHHHHHHHHHHHHHHcCceeec
Confidence 321 22333344566776554
No 306
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=2.7e-10 Score=92.76 Aligned_cols=157 Identities=15% Similarity=0.055 Sum_probs=104.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCC-CcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEE
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 94 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 94 (223)
-|+..|+-.-|||||+.++.+..-..... .--|.+.+......+.....+.|+|+||++++-..+...+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 47788999999999999999864432111 11134444443334334448889999999999888888889999999999
Q ss_pred ECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH---HcCCeEEEeccCCCCCHHHHHHHH
Q 027438 95 DISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAE---AQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
|.++.-..+..+.. . +..... -...++|+||+|..++.++ .+..+.+.. ..++++|.+|+++|.||+++.+.|
T Consensus 82 ~~deGl~~qtgEhL-~-iLdllg-i~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l 157 (447)
T COG3276 82 AADEGLMAQTGEHL-L-ILDLLG-IKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELKNEL 157 (447)
T ss_pred eCccCcchhhHHHH-H-HHHhcC-CCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHHHHH
Confidence 99764332222211 1 111111 2456899999998864321 222222222 334668999999999999999999
Q ss_pred HHHHH
Q 027438 172 VTEIY 176 (223)
Q Consensus 172 ~~~~~ 176 (223)
.....
T Consensus 158 ~~L~~ 162 (447)
T COG3276 158 IDLLE 162 (447)
T ss_pred HHhhh
Confidence 87763
No 307
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.19 E-value=8.6e-11 Score=97.63 Aligned_cols=168 Identities=18% Similarity=0.303 Sum_probs=128.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEE
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 90 (223)
.-+++|+.|+|..++|||+|+++++.+.+.....+. ...+...+.+++....+.+.|.+|. ....|-..+|++
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e--~~~~kkE~vv~gqs~lLlirdeg~~-----~~aQft~wvdav 99 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE--GGRFKKEVVVDGQSHLLLIRDEGGH-----PDAQFCQWVDAV 99 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccCCc--CccceeeEEeeccceEeeeecccCC-----chhhhhhhccce
Confidence 445799999999999999999999988776554433 3345666667888888888898873 234556789999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCC--CcccCHHHHHHHH-HHcCCeEEEeccCCCCCHHH
Q 027438 91 LLVYDISRRQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKD--AREVTTAEGKALA-EAQGLFFMETSALDSSNVTA 166 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D~~~--~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~ 166 (223)
||||.+.+..+|+.+..+...+..+ ....+|.++++++--... .+.+...+++.++ +...+.+|++++.+|.++..
T Consensus 100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r 179 (749)
T KOG0705|consen 100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVER 179 (749)
T ss_pred EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence 9999999999999998887776544 334688888888644332 2445555555554 45567899999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 027438 167 AFQTVVTEIYNILSRKVMI 185 (223)
Q Consensus 167 ~~~~l~~~~~~~~~~~~~~ 185 (223)
+|+.++.++...+.+++..
T Consensus 180 vf~~~~~k~i~~~~~qq~~ 198 (749)
T KOG0705|consen 180 VFQEVAQKIVQLRKYQQLP 198 (749)
T ss_pred HHHHHHHHHHHHHhhhhcc
Confidence 9999999988887766654
No 308
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1e-10 Score=91.61 Aligned_cols=162 Identities=18% Similarity=0.119 Sum_probs=104.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCC---CCCCcceee-------eEEE-----------EEEEC------CEEEE
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYP---NSKSTIGVE-------FQTQ-----------KMDIN------GKEVK 64 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~-------~~~~-----------~~~~~------~~~~~ 64 (223)
+..++|.++|+..-|||||..+|.+--... +....++.. ++.+ .-... .-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 678999999999999999999998731110 000000000 0000 00000 12346
Q ss_pred EEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHHH
Q 027438 65 AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE--VTTAEG 142 (223)
Q Consensus 65 ~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~--~~~~~~ 142 (223)
+.|.|.|||+-....+.+-..--|+.++|++.+.+-.-.+-..-+..+.-.. -..+|++-||+|+....+ -.++++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence 7899999999876666655566899999999987432222222222221111 356899999999986422 346667
Q ss_pred HHHHHH---cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027438 143 KALAEA---QGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 143 ~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
++|.+. .++|++++||..+.|++.+++.|...+
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I 201 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI 201 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence 777653 367899999999999999998876544
No 309
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.18 E-value=1.6e-10 Score=86.53 Aligned_cols=145 Identities=22% Similarity=0.317 Sum_probs=89.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhh-----cchHhhhcCC
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFY-PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR-----AVTSAYYRGA 87 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-----~~~~~~~~~~ 87 (223)
.-||+++|.+|||||++--.+...... ....++.+.++......+-|. ..+.+||.+|++.+- ......+++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 358999999999999975555533211 122223233444444444432 468899999988542 2455678999
Q ss_pred cEEEEEEECCCHhhHHHH---HHHHHHHhhcCCCCCcEEEEEeCCCCCCC--cccCHHHHH----HHHHHcCCeEEEecc
Q 027438 88 VGALLVYDISRRQTFDSI---GRWLNELHTHSDMNVVTILVGNKSDLKDA--REVTTAEGK----ALAEAQGLFFMETSA 158 (223)
Q Consensus 88 d~vi~v~d~~~~~s~~~~---~~~~~~i~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~----~~~~~~~~~~~~~Sa 158 (223)
+++|++||+...+--..+ ++-++.+.++.+ ...+.+..+|+|+... ++...++.. .+....++.+|++|.
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP-~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSP-EAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC-cceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 999999999987544444 344455555554 5778888999999753 222222222 223333455777776
Q ss_pred CC
Q 027438 159 LD 160 (223)
Q Consensus 159 ~~ 160 (223)
.+
T Consensus 162 wD 163 (295)
T KOG3886|consen 162 WD 163 (295)
T ss_pred hh
Confidence 55
No 310
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.16 E-value=4.3e-10 Score=96.49 Aligned_cols=120 Identities=15% Similarity=0.148 Sum_probs=72.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCC-cceeeeEEEEEEECCEEEEEEEEeCCCcchhh-------cc---h
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKS-TIGVEFQTQKMDINGKEVKAQIWDTAGQERFR-------AV---T 80 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~---~ 80 (223)
+..++|+|+|.+|+||||++|+|++......... ..+..........++ ..+.++||||..... .+ .
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 4568999999999999999999999765433321 112222222223343 567899999955421 11 1
Q ss_pred Hhhhc--CCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCC--CCcEEEEEeCCCCCC
Q 027438 81 SAYYR--GAVGALLVYDISRRQTFDSIGRWLNELHTHSDM--NVVTILVGNKSDLKD 133 (223)
Q Consensus 81 ~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~D~~~ 133 (223)
..++. .+|++|+|..++.......-..+++.+...+.. =..+|||.|+.|..+
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 11222 589999999886432211222344444333321 256899999999875
No 311
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=2e-10 Score=97.41 Aligned_cols=126 Identities=23% Similarity=0.274 Sum_probs=89.9
Q ss_pred CccccccccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCc---------------ceeee--EEEEE---EECCE
Q 027438 2 AFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKST---------------IGVEF--QTQKM---DINGK 61 (223)
Q Consensus 2 ~~~~~~~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~---------------~~~~~--~~~~~---~~~~~ 61 (223)
.|.....+-.....+|.++|+-.+|||+|+..|.....+.-+... -|... ...+. ...+.
T Consensus 116 ~yl~~l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~K 195 (971)
T KOG0468|consen 116 EYLAGLMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGK 195 (971)
T ss_pred HHHHHhccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCc
Confidence 344555666778899999999999999999998875432211100 01111 11111 12457
Q ss_pred EEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 027438 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~ 131 (223)
.+-++++||||+-.+.......++.+|++++++|+.+.-+++.-+-....+ ....|+++|.||+|.
T Consensus 196 S~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhai----q~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 196 SYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAI----QNRLPIVVVINKVDR 261 (971)
T ss_pred eeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHH----hccCcEEEEEehhHH
Confidence 788999999999999999999999999999999999877766533332223 236899999999996
No 312
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.15 E-value=1.2e-09 Score=87.73 Aligned_cols=104 Identities=18% Similarity=0.117 Sum_probs=64.6
Q ss_pred EEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHH
Q 027438 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAE 141 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~ 141 (223)
.+.+.|+||+|..... ......+|.++++.+.... +.+......+. ++|.++|+||+|+..........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHH
Confidence 4678899999954322 2355678888887554433 33333333332 47789999999987532211000
Q ss_pred ------HHHHHH---HcCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027438 142 ------GKALAE---AQGLFFMETSALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 142 ------~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 176 (223)
...+.. .+..+++.+||+++.|+++++++|.+...
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 011111 12245899999999999999999988643
No 313
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.14 E-value=9.9e-10 Score=84.80 Aligned_cols=68 Identities=18% Similarity=0.129 Sum_probs=42.5
Q ss_pred EEEEEEeCCCcch-------------hhcchHhhhc-CCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 027438 63 VKAQIWDTAGQER-------------FRAVTSAYYR-GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNK 128 (223)
Q Consensus 63 ~~~~l~D~~G~~~-------------~~~~~~~~~~-~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 128 (223)
..++++|+||... ...+...+++ ..+++++|+|......-.......+.+. ..+.++++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence 4588999999532 1223455666 4568999998865322222222223322 236899999999
Q ss_pred CCCCC
Q 027438 129 SDLKD 133 (223)
Q Consensus 129 ~D~~~ 133 (223)
.|..+
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99875
No 314
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=3e-09 Score=85.53 Aligned_cols=84 Identities=17% Similarity=0.138 Sum_probs=60.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECC----------------EEEEEEEEeCCC-----
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING----------------KEVKAQIWDTAG----- 72 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~D~~G----- 72 (223)
.+++.|+|-|+||||||.++++.........|+.+.+.......+.. ....+.++|++|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 37899999999999999999998876555555555555444443321 345688999998
Q ss_pred --cchhhcchHhhhcCCcEEEEEEECC
Q 027438 73 --QERFRAVTSAYYRGAVGALLVYDIS 97 (223)
Q Consensus 73 --~~~~~~~~~~~~~~~d~vi~v~d~~ 97 (223)
.+...+.-..-++.+|+++.|++..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 2234444455678999999999976
No 315
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=8.1e-10 Score=96.80 Aligned_cols=120 Identities=19% Similarity=0.194 Sum_probs=88.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCC--CCC-CCC-------------CcceeeeEEEEEEECCE-EEEEEEEeCCCc
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDE--FYP-NSK-------------STIGVEFQTQKMDINGK-EVKAQIWDTAGQ 73 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~--~~~-~~~-------------~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~ 73 (223)
.+...+|.|+|+.++|||||..+|+... ... ... ..-|.+........... .+.++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 5677899999999999999999997521 111 000 11133344443344344 488999999999
Q ss_pred chhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027438 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134 (223)
Q Consensus 74 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~ 134 (223)
-+|.......++-+|+.++|+|+...-..+.-.-|.+.... +.|.++++||+|....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~----~vp~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY----GVPRILFVNKMDRLGA 143 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc----CCCeEEEEECcccccc
Confidence 99999999999999999999999986655555556554433 7999999999998754
No 316
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.12 E-value=9.9e-11 Score=91.72 Aligned_cols=159 Identities=20% Similarity=0.177 Sum_probs=101.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcch---------hhcchHhh
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER---------FRAVTSAY 83 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~~ 83 (223)
...-|.|+|..++|||||+++|+.....+...-+-+.+........+ .+-.+.+.||.|.-+ |....+.
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp-sg~~vlltDTvGFisdLP~~LvaAF~ATLee- 254 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP-SGNFVLLTDTVGFISDLPIQLVAAFQATLEE- 254 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC-CCcEEEEeechhhhhhCcHHHHHHHHHHHHH-
Confidence 34678999999999999999999766655544333333333333332 223456889999322 3333333
Q ss_pred hcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCC----CcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccC
Q 027438 84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMN----VVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSAL 159 (223)
Q Consensus 84 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~----~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (223)
...+|+++.|.|+++|.--.....-+..+....-.. ..++=|-||.|..+.. .. .+.++ .+.+|+.
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-~e-------~E~n~--~v~isal 324 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-VE-------EEKNL--DVGISAL 324 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc-Cc-------cccCC--ccccccc
Confidence 368999999999999876555555555544432111 2245667888876531 11 11222 5788999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhh
Q 027438 160 DSSNVTAAFQTVVTEIYNILSRKV 183 (223)
Q Consensus 160 ~~~~i~~~~~~l~~~~~~~~~~~~ 183 (223)
+|.|++++.+.+-..+..-..-..
T Consensus 325 tgdgl~el~~a~~~kv~~~t~~~e 348 (410)
T KOG0410|consen 325 TGDGLEELLKAEETKVASETTVDE 348 (410)
T ss_pred cCccHHHHHHHHHHHhhhhheeee
Confidence 999999999998777765555443
No 317
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.09 E-value=2.6e-10 Score=87.52 Aligned_cols=153 Identities=20% Similarity=0.195 Sum_probs=85.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCC-----------CCCCCCCcce---------------eeeEEEEEEECC-----
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDE-----------FYPNSKSTIG---------------VEFQTQKMDING----- 60 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~-----------~~~~~~~~~~---------------~~~~~~~~~~~~----- 60 (223)
...+.|.|.|+||+|||||+++|...- +.|.+..+-| ...+...+...+
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 456899999999999999999886421 1111111111 011222221211
Q ss_pred -------------EEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEe
Q 027438 61 -------------KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGN 127 (223)
Q Consensus 61 -------------~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n 127 (223)
-++.+.|++|.|.-... .....-+|.+++|....-.+..+.+..-+-++ .=++|+|
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVN 175 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVN 175 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEe
Confidence 13557789998843322 23446799999999987766554433333332 3489999
Q ss_pred CCCCCCCcccCHHHHHHHHHH-------cCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027438 128 KSDLKDAREVTTAEGKALAEA-------QGLFFMETSALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 128 K~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 176 (223)
|+|...... ...+.+..... +..+++.+||.++.|++++++.|.+...
T Consensus 176 KaD~~gA~~-~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 176 KADRPGADR-TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp --SHHHHHH-HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CCChHHHHH-HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 999654322 22222222221 2347999999999999999999876443
No 318
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.08 E-value=1.1e-09 Score=80.27 Aligned_cols=79 Identities=13% Similarity=0.026 Sum_probs=52.6
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc--CCeEEEeccCCCCCHHH
Q 027438 89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ--GLFFMETSALDSSNVTA 166 (223)
Q Consensus 89 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~ 166 (223)
.-|+|+|++..+-.. ++-...+ -..=++|.||.|+...-..+.+...+-+++. +.+++++|+++|+|+++
T Consensus 120 ~~v~VidvteGe~~P--~K~gP~i------~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~ 191 (202)
T COG0378 120 LRVVVIDVTEGEDIP--RKGGPGI------FKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDE 191 (202)
T ss_pred eEEEEEECCCCCCCc--ccCCCce------eEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHH
Confidence 678888887653211 0000000 0134889999999876555555555555444 57899999999999999
Q ss_pred HHHHHHHHH
Q 027438 167 AFQTVVTEI 175 (223)
Q Consensus 167 ~~~~l~~~~ 175 (223)
+++++....
T Consensus 192 ~~~~i~~~~ 200 (202)
T COG0378 192 WLRFIEPQA 200 (202)
T ss_pred HHHHHHhhc
Confidence 999987543
No 319
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=4.1e-09 Score=81.79 Aligned_cols=144 Identities=20% Similarity=0.187 Sum_probs=97.4
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHHcCC----------------CCCCCCCcceeeeEEEEEEECCEEEEEEEEeC
Q 027438 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDE----------------FYPNSKSTIGVEFQTQKMDINGKEVKAQIWDT 70 (223)
Q Consensus 7 ~~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 70 (223)
..++..+.++|..+|+.+-|||||..+++.-- .+.. ..-|++.....+.+.-........|+
T Consensus 5 kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeE--k~rGITIntahveyet~~rhyahVDc 82 (394)
T COG0050 5 KFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEE--KARGITINTAHVEYETANRHYAHVDC 82 (394)
T ss_pred hhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchH--hhcCceeccceeEEecCCceEEeccC
Confidence 34567788999999999999999998876410 1111 12245555555555444445568999
Q ss_pred CCcchhhcchHhhhcCCcEEEEEEECCC---HhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcc---cCHHHHH
Q 027438 71 AGQERFRAVTSAYYRGAVGALLVYDISR---RQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDARE---VTTAEGK 143 (223)
Q Consensus 71 ~G~~~~~~~~~~~~~~~d~vi~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~D~~~~~~---~~~~~~~ 143 (223)
||+.+|-.++..-..+.|+.|+|+++++ |++.+. +.-...-+.| +++++||+|+.+..+ .-..+.+
T Consensus 83 PGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEH-------iLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvr 155 (394)
T COG0050 83 PGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH-------ILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVR 155 (394)
T ss_pred CChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhh-------hhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHH
Confidence 9999998888888889999999999998 344332 2111222565 555599999987433 3356677
Q ss_pred HHHHHcCC-----eEEEeccC
Q 027438 144 ALAEAQGL-----FFMETSAL 159 (223)
Q Consensus 144 ~~~~~~~~-----~~~~~Sa~ 159 (223)
++...++. |++.-||.
T Consensus 156 eLLs~y~f~gd~~Pii~gSal 176 (394)
T COG0050 156 ELLSEYGFPGDDTPIIRGSAL 176 (394)
T ss_pred HHHHHcCCCCCCcceeechhh
Confidence 78777765 46666664
No 320
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.04 E-value=4.7e-09 Score=83.92 Aligned_cols=118 Identities=16% Similarity=0.282 Sum_probs=75.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCC----------CCCcceeeeEEEEEEECCEEEEEEEEeCCCcchh---h
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPN----------SKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF---R 77 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---~ 77 (223)
....++|+++|+.|+|||||+|.|++...... ..+++........+.-++..+.++++||||..+. .
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs 99 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNS 99 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccc
Confidence 35679999999999999999999998633222 1233333444444445677888999999993221 1
Q ss_pred cchH-----------hhh--------------cCCcEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCC
Q 027438 78 AVTS-----------AYY--------------RGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDL 131 (223)
Q Consensus 78 ~~~~-----------~~~--------------~~~d~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~D~ 131 (223)
..|. .++ ..++++++.+..+... +..+ ...+..+... +.+|-|..|+|.
T Consensus 100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~ls~~----vNlIPVI~KaD~ 174 (373)
T COG5019 100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRLSKR----VNLIPVIAKADT 174 (373)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHHhcc----cCeeeeeecccc
Confidence 1111 111 3578899999887643 2222 3445555544 557778889997
Q ss_pred CC
Q 027438 132 KD 133 (223)
Q Consensus 132 ~~ 133 (223)
..
T Consensus 175 lT 176 (373)
T COG5019 175 LT 176 (373)
T ss_pred CC
Confidence 54
No 321
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.03 E-value=6.9e-10 Score=87.33 Aligned_cols=81 Identities=15% Similarity=0.089 Sum_probs=56.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCE---------------EEEEEEEeCCCcchh-----
Q 027438 17 VVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGK---------------EVKAQIWDTAGQERF----- 76 (223)
Q Consensus 17 v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~----- 76 (223)
|+|+|.|+||||||+|+|++........+..+.+.....+.+.+. ...+.++|+||....
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999998765444455454555555555443 235889999994321
Q ss_pred --hcchHhhhcCCcEEEEEEECC
Q 027438 77 --RAVTSAYYRGAVGALLVYDIS 97 (223)
Q Consensus 77 --~~~~~~~~~~~d~vi~v~d~~ 97 (223)
.......++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 112223457899999999863
No 322
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.00 E-value=3.4e-09 Score=82.60 Aligned_cols=154 Identities=19% Similarity=0.152 Sum_probs=92.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCC-----------CCCCCCCcceee---------------eEEEEEEEC------
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDE-----------FYPNSKSTIGVE---------------FQTQKMDIN------ 59 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~-----------~~~~~~~~~~~~---------------~~~~~~~~~------ 59 (223)
.....|.|.|.||+|||||+..|...- +.+++..+-|.- .+...+...
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl 128 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence 345789999999999999999886421 123333332211 011111111
Q ss_pred ------------CEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEe
Q 027438 60 ------------GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGN 127 (223)
Q Consensus 60 ------------~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n 127 (223)
.-++.+.|++|.|.-... -....-+|.++++.-..-.+..+.+..=+-++ -=++|+|
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi--------aDi~vIN 197 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEI--------ADIIVIN 197 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhh--------hheeeEe
Confidence 124557899998843322 23345689998888877666655554433332 2389999
Q ss_pred CCCCCCCcccCHHHHH--HHH----HH--cCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027438 128 KSDLKDAREVTTAEGK--ALA----EA--QGLFFMETSALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 128 K~D~~~~~~~~~~~~~--~~~----~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 176 (223)
|.|.........+... .+. .. +..+++.+||.+|+|++++++.+..+..
T Consensus 198 KaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 198 KADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred ccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 9996543221111111 111 11 2335999999999999999999976553
No 323
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.99 E-value=1.4e-09 Score=85.63 Aligned_cols=56 Identities=16% Similarity=0.107 Sum_probs=40.2
Q ss_pred CCcEEEEEeCCCCCCCcccCHHHHHHHHHH--cCCeEEEeccCCCCCHHHHHHHHHHH
Q 027438 119 NVVTILVGNKSDLKDAREVTTAEGKALAEA--QGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 119 ~~piilv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
..+-++|+||+|+........+...+..+. ..++++.+|+++|+|+++++++|..+
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 355699999999975322233333433333 35779999999999999999999763
No 324
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.98 E-value=7.8e-09 Score=83.18 Aligned_cols=118 Identities=19% Similarity=0.227 Sum_probs=80.0
Q ss_pred EEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHhhH-------HHHH---HHHHHHhh-cCCCCCcEEEEEeCCCC
Q 027438 63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTF-------DSIG---RWLNELHT-HSDMNVVTILVGNKSDL 131 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~-------~~~~---~~~~~i~~-~~~~~~piilv~nK~D~ 131 (223)
..+.++|++|+...+.-|.+.+.+++++|||+++++-+.. +.+. ..+..+-. ..=...++|+.+||.|+
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL 274 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL 274 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence 6678999999999999999999999999999999873221 1121 22222221 22236899999999998
Q ss_pred CCC---------------cccCHHHHHHHHH--------H--cCCeEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 027438 132 KDA---------------REVTTAEGKALAE--------A--QGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180 (223)
Q Consensus 132 ~~~---------------~~~~~~~~~~~~~--------~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 180 (223)
-++ -.-..+++..+.. . ..+.+..+.|.+-.+|+.+|.++...+....-
T Consensus 275 FeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nl 348 (354)
T KOG0082|consen 275 FEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNL 348 (354)
T ss_pred HHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence 431 0123444444321 1 12345667999999999999999887765543
No 325
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=2e-08 Score=80.84 Aligned_cols=145 Identities=18% Similarity=0.248 Sum_probs=88.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCC---------CCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhc---c
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPN---------SKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA---V 79 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---~ 79 (223)
.-.++++++|+.|.|||||+|.|+...+... ...+.........+.-+|-.++++++||||..+... .
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 4469999999999999999999988744332 112323333444444467788899999999222110 0
Q ss_pred h-----------Hhh-----------h--cCCcEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027438 80 T-----------SAY-----------Y--RGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDA 134 (223)
Q Consensus 80 ~-----------~~~-----------~--~~~d~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~D~~~~ 134 (223)
| ..+ + ..++++++.+..+... +..+ ...+..+.. ...+|-|..|+|....
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l~~----~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKLSK----KVNLIPVIAKADTLTK 173 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHHhc----cccccceeeccccCCH
Confidence 1 111 1 2688899999887642 2222 334444443 4667888889998754
Q ss_pred ccc--CHHHHHHHHHHcCCeEEEeccCCC
Q 027438 135 REV--TTAEGKALAEAQGLFFMETSALDS 161 (223)
Q Consensus 135 ~~~--~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (223)
.++ ....+.+.....++++|....-..
T Consensus 174 ~El~~~K~~I~~~i~~~nI~vf~fp~~~~ 202 (366)
T KOG2655|consen 174 DELNQFKKRIRQDIEEHNIKVFDFPTDES 202 (366)
T ss_pred HHHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence 332 233344556677888666554443
No 326
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.95 E-value=3.1e-09 Score=77.23 Aligned_cols=95 Identities=16% Similarity=0.135 Sum_probs=65.0
Q ss_pred hhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEE
Q 027438 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFME 155 (223)
Q Consensus 76 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (223)
++.+..++++++|++|+|+|++++..... ..+...+. ..+.|+++|+||+|+...... .....+....+.+++.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEE
Confidence 45567888889999999999987643221 11222221 125899999999998642211 1111333445678999
Q ss_pred eccCCCCCHHHHHHHHHHHHH
Q 027438 156 TSALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 156 ~Sa~~~~~i~~~~~~l~~~~~ 176 (223)
+||+++.|++++++.+.+.+.
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEccccccHHHHHHHHHHHHh
Confidence 999999999999999987654
No 327
>PRK12289 GTPase RsgA; Reviewed
Probab=98.95 E-value=9e-09 Score=83.98 Aligned_cols=92 Identities=16% Similarity=0.146 Sum_probs=67.9
Q ss_pred cchHhhhcCCcEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEe
Q 027438 78 AVTSAYYRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMET 156 (223)
Q Consensus 78 ~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (223)
.+....+.++|.+++|+|+.++. ....+..|+..+.. .++|+++|+||+|+....+. +...+.....+.+++.+
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~i 155 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFI 155 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEE
Confidence 33444578999999999999875 45566778776532 36899999999999743221 22223335678889999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 027438 157 SALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 157 Sa~~~~~i~~~~~~l~~~ 174 (223)
||+++.|++++++.|...
T Consensus 156 SA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 156 SVETGIGLEALLEQLRNK 173 (352)
T ss_pred EcCCCCCHHHHhhhhccc
Confidence 999999999999988653
No 328
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.95 E-value=6e-09 Score=78.24 Aligned_cols=93 Identities=22% Similarity=0.112 Sum_probs=65.1
Q ss_pred hhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcC
Q 027438 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALA-----EAQG 150 (223)
Q Consensus 76 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~-----~~~~ 150 (223)
+..++..+++.+|++++|+|++++.. .|...+.... .+.|+++|+||+|+... ....+....+. ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~-~~~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG-GNNPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc-CCCcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHhhcC
Confidence 46778888999999999999987542 1222222122 36899999999998753 22333333332 2333
Q ss_pred C---eEEEeccCCCCCHHHHHHHHHHHH
Q 027438 151 L---FFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 151 ~---~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
. .+|.+||+++.|++++++.|...+
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3 589999999999999999998765
No 329
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=2.7e-08 Score=75.19 Aligned_cols=151 Identities=17% Similarity=0.219 Sum_probs=86.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCC---------CCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchh---hcchH
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYP---------NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF---RAVTS 81 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---~~~~~ 81 (223)
.++|+|+|.+|.|||||+|.|....... ....++........+.-++....++++||||..+. ...|+
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 5999999999999999999997643322 11122222222333334566777899999993221 11111
Q ss_pred -----------hhh--------------cCCcEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCC--
Q 027438 82 -----------AYY--------------RGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD-- 133 (223)
Q Consensus 82 -----------~~~--------------~~~d~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~D~~~-- 133 (223)
.|+ ..++++++.+..+.. ++..+ ..+++.+... ..+|-|.-|.|-..
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~v----vNvvPVIakaDtlTle 200 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTEV----VNVVPVIAKADTLTLE 200 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhhh----heeeeeEeecccccHH
Confidence 111 246677777777653 33333 3344444443 44677778999653
Q ss_pred CcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 027438 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 169 (223)
++..-.+.++.-...+++.+++-.+.+-..-+..++
T Consensus 201 Er~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN 236 (336)
T KOG1547|consen 201 ERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLN 236 (336)
T ss_pred HHHHHHHHHHHHHHhcCcccccccccccchhHHHHH
Confidence 222234445555677888877766555433333333
No 330
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.88 E-value=2.5e-08 Score=93.20 Aligned_cols=113 Identities=22% Similarity=0.248 Sum_probs=75.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCC----C--CcceeeeEEEEEEECCEEEEEEEEeCCC----cc----hhhcchHh
Q 027438 17 VVLIGDSAVGKSNLLARFARDEFYPNS----K--STIGVEFQTQKMDINGKEVKAQIWDTAG----QE----RFRAVTSA 82 (223)
Q Consensus 17 v~v~G~~~~GKSsli~~l~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~l~D~~G----~~----~~~~~~~~ 82 (223)
.+|+|++|+|||||+..- |..++-.. . ...+.+ ..+.+.+.++.+ ++||+| ++ .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t-~~c~wwf~~~av---liDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGT-RNCDWWFTDEAV---LIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCC-cccceEecCCEE---EEcCCCccccCCCcccccHHHHHH
Confidence 579999999999999866 44443211 1 111212 234555666555 999999 21 12234554
Q ss_pred hh---------cCCcEEEEEEECCCHh-----h----HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027438 83 YY---------RGAVGALLVYDISRRQ-----T----FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134 (223)
Q Consensus 83 ~~---------~~~d~vi~v~d~~~~~-----s----~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~ 134 (223)
++ +..|++|+++|+.+-. . -..++..+.++........||.|++||+|+...
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 44 4699999999987632 1 134566777777777789999999999998754
No 331
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.88 E-value=2.1e-08 Score=76.58 Aligned_cols=89 Identities=20% Similarity=0.163 Sum_probs=59.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcch-------hhcchHhhhcCC
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-------FRAVTSAYYRGA 87 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~ 87 (223)
-+|.++|-|.+|||||+..+.+...+......++.+.......+ +.-.+++.|.||.-+ .........+.+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y--~gaKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRY--KGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEec--cccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 48999999999999999999986544333322222222223323 335688999999332 233445566889
Q ss_pred cEEEEEEECCCHhhHHHH
Q 027438 88 VGALLVYDISRRQTFDSI 105 (223)
Q Consensus 88 d~vi~v~d~~~~~s~~~~ 105 (223)
+.+++|+|+..|-+...+
T Consensus 138 nli~~vld~~kp~~hk~~ 155 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKI 155 (358)
T ss_pred cEEEEEeeccCcccHHHH
Confidence 999999999887655443
No 332
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.87 E-value=1.2e-08 Score=81.49 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=68.6
Q ss_pred HhhhcCCcEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccC
Q 027438 81 SAYYRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSAL 159 (223)
Q Consensus 81 ~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (223)
...+.++|.+++|+|+.++. ++..+..|+..+... ++|+++|+||+|+.+.. ............+.+++.+||+
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECC
Confidence 34578999999999999988 888888898876543 68999999999997531 1122233345578899999999
Q ss_pred CCCCHHHHHHHHHH
Q 027438 160 DSSNVTAAFQTVVT 173 (223)
Q Consensus 160 ~~~~i~~~~~~l~~ 173 (223)
++.|+++++..|..
T Consensus 148 ~g~gi~~L~~~L~~ 161 (287)
T cd01854 148 TGEGLDELREYLKG 161 (287)
T ss_pred CCccHHHHHhhhcc
Confidence 99999999988764
No 333
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=1.7e-08 Score=82.31 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=79.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHc--CCCC-------------CCCC-----CcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027438 14 LFKVVLIGDSAVGKSNLLARFAR--DEFY-------------PNSK-----STIGVEFQTQKMDINGKEVKAQIWDTAGQ 73 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~--~~~~-------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 73 (223)
....+|+-+|.+|||||-..|+- +.+. ..++ ..-|+......+.++.....+.|.|||||
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 45678999999999999988752 2110 0000 11134444555555555678889999999
Q ss_pred chhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027438 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 74 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~ 133 (223)
+++..-+-..+..+|..+.|+|+...-.-.. .+.++..+ -.++||+-.+||.|...
T Consensus 92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcr---lR~iPI~TFiNKlDR~~ 147 (528)
T COG4108 92 EDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCR---LRDIPIFTFINKLDREG 147 (528)
T ss_pred cccchhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHh---hcCCceEEEeecccccc
Confidence 9998888788889999999999976422111 23333333 23799999999999764
No 334
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=4.1e-08 Score=74.31 Aligned_cols=170 Identities=18% Similarity=0.237 Sum_probs=102.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhc---chHhhhcCCcEE
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRA---VTSAYYRGAVGA 90 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---~~~~~~~~~d~v 90 (223)
..+|+++|...+||||+-.... .+..++..-..+.+.....-.+.+..+.+.+||.||+-.+-. -....++.+.++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVF-hkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVF-HKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred CceEEEEeecccCcchhhheee-eccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 3679999999999999766444 455554433333222233333444667889999999766432 245678999999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhc--CCCCCcEEEEEeCCCCCCCc-------ccCHHHHHHHHHH--cCCe-EEEecc
Q 027438 91 LLVYDISRRQTFDSIGRWLNELHTH--SDMNVVTILVGNKSDLKDAR-------EVTTAEGKALAEA--QGLF-FMETSA 158 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~piilv~nK~D~~~~~-------~~~~~~~~~~~~~--~~~~-~~~~Sa 158 (223)
|+|+|.-+.. .+.+......+.+. .+..+.+=+...|.|..... .+-..-..++++. .++. -|...+
T Consensus 106 ifvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS 184 (347)
T KOG3887|consen 106 IFVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS 184 (347)
T ss_pred EEEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence 9999986632 33333333333222 34467778889999976421 1111111122221 1222 244444
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 027438 159 LDSSNVTAAFQTVVTEIYNILSRKVMI 185 (223)
Q Consensus 159 ~~~~~i~~~~~~l~~~~~~~~~~~~~~ 185 (223)
.-...+-+.|..+++++..+.+--++.
T Consensus 185 IyDHSIfEAFSkvVQkLipqLptLEnl 211 (347)
T KOG3887|consen 185 IYDHSIFEAFSKVVQKLIPQLPTLENL 211 (347)
T ss_pred ecchHHHHHHHHHHHHHhhhchhHHHH
Confidence 555678889999888888777655443
No 335
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.86 E-value=7e-09 Score=74.09 Aligned_cols=54 Identities=24% Similarity=0.279 Sum_probs=39.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 73 (223)
+++++|.+|+|||||+|++.+........ ..+.+.....+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999876643222 234455555555554 4679999995
No 336
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=3.9e-08 Score=78.70 Aligned_cols=127 Identities=20% Similarity=0.239 Sum_probs=80.5
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCC-CcceeeeEEEEEEE------CCEE-----------------
Q 027438 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDI------NGKE----------------- 62 (223)
Q Consensus 7 ~~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~----------------- 62 (223)
...+-+...-|+++|+-+.||||||+.|+...++.... +..++++....+.- +|..
T Consensus 51 ~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~ 130 (532)
T KOG1954|consen 51 EDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGN 130 (532)
T ss_pred cCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHH
Confidence 33445667889999999999999999999987763222 11123333322211 1111
Q ss_pred ----------------EEEEEEeCCCcch-----------hhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhc
Q 027438 63 ----------------VKAQIWDTAGQER-----------FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTH 115 (223)
Q Consensus 63 ----------------~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~ 115 (223)
-.++++||||.-+ |.....=+...+|.+|++||.-..+--++....+..+..+
T Consensus 131 aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~ 210 (532)
T KOG1954|consen 131 AFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH 210 (532)
T ss_pred HHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC
Confidence 1288999999322 3444555778999999999986543333333444444433
Q ss_pred CCCCCcEEEEEeCCCCCCCcc
Q 027438 116 SDMNVVTILVGNKSDLKDARE 136 (223)
Q Consensus 116 ~~~~~piilv~nK~D~~~~~~ 136 (223)
.-.+-+|+||.|..+..+
T Consensus 211 ---EdkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 211 ---EDKIRVVLNKADQVDTQQ 228 (532)
T ss_pred ---cceeEEEeccccccCHHH
Confidence 445788999999887543
No 337
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1e-08 Score=82.13 Aligned_cols=161 Identities=19% Similarity=0.219 Sum_probs=96.7
Q ss_pred ccccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCC----------------Cc-------ceeeeEEEEEEECC---
Q 027438 7 EDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK----------------ST-------IGVEFQTQKMDING--- 60 (223)
Q Consensus 7 ~~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~----------------~~-------~~~~~~~~~~~~~~--- 60 (223)
|++.....++|+++|...+|||||+-.|+.+....... .+ .|.+-....+.+..
T Consensus 160 Pd~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~t 239 (591)
T KOG1143|consen 160 PDSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMT 239 (591)
T ss_pred CCcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhccc
Confidence 44455668999999999999999999888765432211 00 11111111111111
Q ss_pred -------EEEEEEEEeCCCcchhhcchHhhhc--CCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 027438 61 -------KEVKAQIWDTAGQERFRAVTSAYYR--GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131 (223)
Q Consensus 61 -------~~~~~~l~D~~G~~~~~~~~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~ 131 (223)
..--++++|.+|+..|.......+. ..|..++++++...-.+..-+ .+-.+. ..+.|++++++|+|+
T Consensus 240 aEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrE-HLgl~~---AL~iPfFvlvtK~Dl 315 (591)
T KOG1143|consen 240 AEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTRE-HLGLIA---ALNIPFFVLVTKMDL 315 (591)
T ss_pred HHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHH-HHHHHH---HhCCCeEEEEEeecc
Confidence 1223789999999999877665543 478888888887754333211 111111 227999999999998
Q ss_pred CCCc------------------------ccCHHHHHHHHH----HcCCeEEEeccCCCCCHHHHHHHH
Q 027438 132 KDAR------------------------EVTTAEGKALAE----AQGLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 132 ~~~~------------------------~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
.... .-+..++-..+. ..-.|+|.+|+.+|+|++.+...|
T Consensus 316 ~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 316 VDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred ccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 6520 011122222222 222468999999999988765544
No 338
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.82 E-value=7.2e-08 Score=77.56 Aligned_cols=157 Identities=17% Similarity=0.109 Sum_probs=95.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCc--------------ceeeeEEEEEEECCE---------------
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKST--------------IGVEFQTQKMDINGK--------------- 61 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~--------------- 61 (223)
.+..+.|.+.|+.+.|||||+-.|+.+........+ .+.+.....+-+++.
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 355689999999999999999988765443322111 011112222222211
Q ss_pred ------EEEEEEEeCCCcchhhcchHh--hhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027438 62 ------EVKAQIWDTAGQERFRAVTSA--YYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 62 ------~~~~~l~D~~G~~~~~~~~~~--~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~ 133 (223)
...+.|+||.|++.|.+.+.. +-...|..++++.+++.-+.-. .+.+.-....+.|+++++||+|+..
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t----kEHLgi~~a~~lPviVvvTK~D~~~ 269 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT----KEHLGIALAMELPVIVVVTKIDMVP 269 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh----hHhhhhhhhhcCCEEEEEEecccCc
Confidence 123779999999998665443 4467999999999998644222 1112112223799999999999865
Q ss_pred Cccc--CHHHHHH----------------------HHHHc---CCeEEEeccCCCCCHHHHHHHH
Q 027438 134 AREV--TTAEGKA----------------------LAEAQ---GLFFMETSALDSSNVTAAFQTV 171 (223)
Q Consensus 134 ~~~~--~~~~~~~----------------------~~~~~---~~~~~~~Sa~~~~~i~~~~~~l 171 (223)
...+ ..+++.. .+... =+|+|.+|+.+|+|.+-+.+.+
T Consensus 270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f 334 (527)
T COG5258 270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF 334 (527)
T ss_pred HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence 2111 0111111 11111 2478999999999987665544
No 339
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.82 E-value=1.3e-08 Score=74.96 Aligned_cols=58 Identities=26% Similarity=0.370 Sum_probs=41.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 73 (223)
...++|+++|.|++|||||+|+|.+....... ...|++.....+.++. .+.++||||.
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~~---~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLDK---KVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeCC---CEEEEECcCC
Confidence 34589999999999999999999987653332 2335555555555443 4679999983
No 340
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.82 E-value=1.6e-08 Score=73.60 Aligned_cols=57 Identities=19% Similarity=0.209 Sum_probs=39.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 73 (223)
..++|+++|.||+|||||+|+|.+........ ..|.+.....+..+. .+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAP-IPGETKVWQYITLMK---RIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCC-CCCeeEeEEEEEcCC---CEEEEECcCC
Confidence 35789999999999999999999865533322 234444444444433 2559999993
No 341
>PRK00098 GTPase RsgA; Reviewed
Probab=98.81 E-value=1.9e-08 Score=80.77 Aligned_cols=87 Identities=24% Similarity=0.193 Sum_probs=65.6
Q ss_pred hhcCCcEEEEEEECCCHhhHHH-HHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCC
Q 027438 83 YYRGAVGALLVYDISRRQTFDS-IGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDS 161 (223)
Q Consensus 83 ~~~~~d~vi~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (223)
...++|++++|+|+.++..... +..|+..+.. .++|+++|+||+|+.+..+ ..++........+.+++.+||+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4589999999999998876444 4778776643 3689999999999963222 122334445667889999999999
Q ss_pred CCHHHHHHHHHH
Q 027438 162 SNVTAAFQTVVT 173 (223)
Q Consensus 162 ~~i~~~~~~l~~ 173 (223)
.|++++++.+..
T Consensus 153 ~gi~~L~~~l~g 164 (298)
T PRK00098 153 EGLDELKPLLAG 164 (298)
T ss_pred ccHHHHHhhccC
Confidence 999999988743
No 342
>PRK12288 GTPase RsgA; Reviewed
Probab=98.81 E-value=2.9e-08 Score=80.99 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=67.4
Q ss_pred hcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHHcCCeEEEeccCCCC
Q 027438 84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV-TTAEGKALAEAQGLFFMETSALDSS 162 (223)
Q Consensus 84 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (223)
..++|.+++|+++....++..+..|+..+.. .++|+++|+||+|+....+. ............+.+++.+||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 3569999999999888889999999876542 36899999999999753211 1122233345678899999999999
Q ss_pred CHHHHHHHHHHH
Q 027438 163 NVTAAFQTVVTE 174 (223)
Q Consensus 163 ~i~~~~~~l~~~ 174 (223)
|++++++.|...
T Consensus 195 GideL~~~L~~k 206 (347)
T PRK12288 195 GLEELEAALTGR 206 (347)
T ss_pred CHHHHHHHHhhC
Confidence 999999988653
No 343
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=1e-07 Score=80.20 Aligned_cols=140 Identities=19% Similarity=0.161 Sum_probs=84.9
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcE
Q 027438 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (223)
Q Consensus 10 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 89 (223)
+.++++-|+|+||||+||||||+.|+..-.........| ..+ .+.+...++++.++|. +. .......+-+|.
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----PiT-vvsgK~RRiTflEcp~--Dl-~~miDvaKIaDL 136 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PIT-VVSGKTRRITFLECPS--DL-HQMIDVAKIADL 136 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ceE-EeecceeEEEEEeChH--HH-HHHHhHHHhhhe
Confidence 345678889999999999999999986422111111111 122 2467788999999982 22 234455678999
Q ss_pred EEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcccCHHHHHH----HH-H-HcCCeEEEeccCCC
Q 027438 90 ALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDAREVTTAEGKA----LA-E-AQGLFFMETSALDS 161 (223)
Q Consensus 90 vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~----~~-~-~~~~~~~~~Sa~~~ 161 (223)
+++++|.+-.-..+. ..+++.+..+ +.| ++-|+|+.|+-..........+. |. . ..|+.+|.+|...+
T Consensus 137 VlLlIdgnfGfEMET-mEFLnil~~H---GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~n 211 (1077)
T COG5192 137 VLLLIDGNFGFEMET-MEFLNILISH---GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVEN 211 (1077)
T ss_pred eEEEeccccCceehH-HHHHHHHhhc---CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccccc
Confidence 999999876433332 2233333333 444 66679999987643222222221 11 1 33778899887543
No 344
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.74 E-value=1.9e-07 Score=77.80 Aligned_cols=112 Identities=18% Similarity=0.183 Sum_probs=74.6
Q ss_pred EEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHh----------hHHH-HHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 027438 63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ----------TFDS-IGRWLNELHTHSDMNVVTILVGNKSDL 131 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~----------s~~~-~~~~~~~i~~~~~~~~piilv~nK~D~ 131 (223)
..+.++|++|+...+.-|.+++.+++++|||+++++-. .+.. +.-|-..+....-...|+||+.||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 56789999999999999999999999999999987521 1222 222322333333237899999999996
Q ss_pred CCC-----c-------------ccCHHHHHHHHHH------------cCCeEEEeccCCCCCHHHHHHHHHHH
Q 027438 132 KDA-----R-------------EVTTAEGKALAEA------------QGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 132 ~~~-----~-------------~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
.+. . .-..+.+..+... ..+.+..++|.+..++..+|+.+.+.
T Consensus 316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~ 388 (389)
T PF00503_consen 316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI 388 (389)
T ss_dssp HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence 320 0 1233455544321 22245678999999999999988754
No 345
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.72 E-value=5.8e-08 Score=79.90 Aligned_cols=95 Identities=22% Similarity=0.243 Sum_probs=69.5
Q ss_pred cchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHH----HHHHH
Q 027438 73 QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGK----ALAEA 148 (223)
Q Consensus 73 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~----~~~~~ 148 (223)
.+.+..+...+++.++++++|+|+.+.. ..|...+..... +.|+++|+||+|+... ....+... ++++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence 4678888888889999999999997643 234444444332 5799999999998752 33333333 34566
Q ss_pred cCC---eEEEeccCCCCCHHHHHHHHHHH
Q 027438 149 QGL---FFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 149 ~~~---~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
.++ .++.+||+++.|++++++.|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 676 38999999999999999998653
No 346
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=7.9e-08 Score=88.12 Aligned_cols=164 Identities=22% Similarity=0.255 Sum_probs=95.7
Q ss_pred EEEcCCCCCHHHHHHHHHcCCCCC--CCC--CcceeeeEEEEEEECCEEEEEEEEeCCC----c----chhhcchHhhh-
Q 027438 18 VLIGDSAVGKSNLLARFARDEFYP--NSK--STIGVEFQTQKMDINGKEVKAQIWDTAG----Q----ERFRAVTSAYY- 84 (223)
Q Consensus 18 ~v~G~~~~GKSsli~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~G----~----~~~~~~~~~~~- 84 (223)
+|||++|+||||++.. .+..++- ... ...+..+..+.+.+.++.+ ++||+| + +.....|.+++
T Consensus 129 ~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaV---lIDtaGry~~q~s~~~~~~~~W~~fL~ 204 (1188)
T COG3523 129 MVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDWWFTDEAV---LIDTAGRYITQDSADEVDRAEWLGFLG 204 (1188)
T ss_pred EEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCcccccceE---EEcCCcceecccCcchhhHHHHHHHHH
Confidence 7999999999999863 2322321 110 1111112344455666666 999999 2 12344555543
Q ss_pred --------cCCcEEEEEEECCCHh-----h----HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-----cCHHHH
Q 027438 85 --------RGAVGALLVYDISRRQ-----T----FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE-----VTTAEG 142 (223)
Q Consensus 85 --------~~~d~vi~v~d~~~~~-----s----~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~-----~~~~~~ 142 (223)
+..|++|+++|+.+-. . ...++.-+.++........||+|++||.|+...-+ .+.++.
T Consensus 205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF~efF~~l~~~~r 284 (1188)
T COG3523 205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGFEEFFGSLNKEER 284 (1188)
T ss_pred HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccccHHHHHhccCHHHH
Confidence 6799999999987621 1 22345556677777777899999999999876311 111221
Q ss_pred HHHHHHcCCeEEEeccCCCCC----HHHHHHHHHHHHHHHHhhhhhhhhhh
Q 027438 143 KALAEAQGLFFMETSALDSSN----VTAAFQTVVTEIYNILSRKVMISQEL 189 (223)
Q Consensus 143 ~~~~~~~~~~~~~~Sa~~~~~----i~~~~~~l~~~~~~~~~~~~~~~~~~ 189 (223)
.. -.|+ .|...+....+ +..-|..+..++..+...++..+...
T Consensus 285 ~q---vwG~-tf~~~~~~~~~~~~~~~~e~~~L~~rl~~~l~~rl~~e~~~ 331 (1188)
T COG3523 285 EQ---VWGV-TFPLDARRNANLAAELEQEFRLLLDRLNAQLVERLQQERDL 331 (1188)
T ss_pred hh---hcee-ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 11 1222 46666666633 34556666666666666665544433
No 347
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=4.6e-07 Score=77.77 Aligned_cols=119 Identities=16% Similarity=0.208 Sum_probs=71.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeE---------------------------------------
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQ--------------------------------------- 52 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--------------------------------------- 52 (223)
....||++.|..++||||++|+++....-+......+.-+.
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 45689999999999999999999876554433211111000
Q ss_pred ----EEEEEECCE-----EEEEEEEeCCCcch---hhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCC
Q 027438 53 ----TQKMDINGK-----EVKAQIWDTAGQER---FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNV 120 (223)
Q Consensus 53 ----~~~~~~~~~-----~~~~~l~D~~G~~~---~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 120 (223)
-..+..+.. .-.+.++|.||.+. ...-...+...+|++|+|.+..+..+.....-+ ......+.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff----~~vs~~Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFF----HKVSEEKP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHH----HHhhccCC
Confidence 000111111 01366889999443 333344566789999999999987665543322 22223245
Q ss_pred cEEEEEeCCCCCCC
Q 027438 121 VTILVGNKSDLKDA 134 (223)
Q Consensus 121 piilv~nK~D~~~~ 134 (223)
.++++.||.|....
T Consensus 263 niFIlnnkwDasas 276 (749)
T KOG0448|consen 263 NIFILNNKWDASAS 276 (749)
T ss_pred cEEEEechhhhhcc
Confidence 66777889897653
No 348
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.70 E-value=3.9e-08 Score=75.88 Aligned_cols=155 Identities=21% Similarity=0.162 Sum_probs=93.7
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCC-CcceeeeEEEEEEECCEEEEEEEEeCCC----------cchhhc
Q 027438 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIGVEFQTQKMDINGKEVKAQIWDTAG----------QERFRA 78 (223)
Q Consensus 10 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~ 78 (223)
+....++++++|.+++|||+|++.++......... +..|.+.....+.+.. .+.++|.|| -.++..
T Consensus 132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhH
Confidence 34667999999999999999999998754432222 2335444444555554 444899999 233555
Q ss_pred chHhhhcCCc---EEEEEEECCCHh--hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc----cCHHHHHH-----
Q 027438 79 VTSAYYRGAV---GALLVYDISRRQ--TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE----VTTAEGKA----- 144 (223)
Q Consensus 79 ~~~~~~~~~d---~vi~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~----~~~~~~~~----- 144 (223)
....++.+-+ -+++++|++-+- .-.....|+.+ .+.|..+|.||||....-. -....+..
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l 282 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL 282 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeehhhhhhhccccccCccccceeehhhc
Confidence 5666654322 345566665431 11122344333 2799999999999753210 00111111
Q ss_pred --HHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 027438 145 --LAEAQGLFFMETSALDSSNVTAAFQTVVT 173 (223)
Q Consensus 145 --~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 173 (223)
-......+++.+|+.++.|+++++-.+.+
T Consensus 283 ~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 283 IRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred cccceeccCCceeeecccccCceeeeeehhh
Confidence 11222345778999999999999877765
No 349
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.70 E-value=1.9e-06 Score=61.56 Aligned_cols=147 Identities=16% Similarity=0.222 Sum_probs=83.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCC-Cc-----------------
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA-GQ----------------- 73 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~-G~----------------- 73 (223)
...++|.|.|+||||||||+.++.+.-....+. - .-+....+.-.+...-+.+.|+. |.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~k-v--gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYK-V--GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCce-e--eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence 356899999999999999998887532222111 1 12233444556677777777776 31
Q ss_pred ----chhh----cchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 027438 74 ----ERFR----AVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKAL 145 (223)
Q Consensus 74 ----~~~~----~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~ 145 (223)
+... ......++.+|+ +++|--.+..+.. ..+...+......+.|++.++.+.+... ..+ .+
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDv--IIIDEIGpMElks-~~f~~~ve~vl~~~kpliatlHrrsr~P----~v~---~i 149 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADV--IIIDEIGPMELKS-KKFREAVEEVLKSGKPLIATLHRRSRHP----LVQ---RI 149 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhcCCE--EEEecccchhhcc-HHHHHHHHHHhcCCCcEEEEEecccCCh----HHH---Hh
Confidence 1111 112233455774 4677766644332 3444555555555788888887776421 122 22
Q ss_pred HHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027438 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 146 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
-...++.+| .+.+|-+.+++.+++.+
T Consensus 150 k~~~~v~v~----lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 150 KKLGGVYVF----LTPENRNRILNEILSVL 175 (179)
T ss_pred hhcCCEEEE----EccchhhHHHHHHHHHh
Confidence 222333344 55556667887777654
No 350
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.67 E-value=7.4e-08 Score=71.10 Aligned_cols=58 Identities=24% Similarity=0.290 Sum_probs=41.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 73 (223)
+..++++++|.+++|||||++++.+..+.. .....+++.....+.++ ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAK-VGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 445799999999999999999999876532 23333455555555554 34679999994
No 351
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.66 E-value=1.1e-07 Score=77.64 Aligned_cols=83 Identities=17% Similarity=0.027 Sum_probs=60.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCCcceeeeEEEEEEECCE---------------EEEEEEEeCCCcch---
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEF-YPNSKSTIGVEFQTQKMDINGK---------------EVKAQIWDTAGQER--- 75 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~--- 75 (223)
+++.|+|.|++|||||+++|++... .....+..+.......+.+.+. ...+.+.|+||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998876 5444455445555555555442 24678999999433
Q ss_pred ----hhcchHhhhcCCcEEEEEEECC
Q 027438 76 ----FRAVTSAYYRGAVGALLVYDIS 97 (223)
Q Consensus 76 ----~~~~~~~~~~~~d~vi~v~d~~ 97 (223)
........++.+|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2233445678999999999974
No 352
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.64 E-value=1e-07 Score=75.78 Aligned_cols=58 Identities=24% Similarity=0.366 Sum_probs=42.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 73 (223)
...++++++|.||+|||||+|+|.+....... ...|++.....+.+.. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEeCC---CEEEEECCCc
Confidence 35689999999999999999999987643332 2335555555555543 4579999996
No 353
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.64 E-value=3.5e-08 Score=71.30 Aligned_cols=59 Identities=24% Similarity=0.289 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCC------CCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchh
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYP------NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF 76 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 76 (223)
-.++++|++|||||||+|+|.+..... .......++.....+..+...+ ++||||...+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~---iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGGY---IIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSEE---EECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCcE---EEECCCCCcc
Confidence 467899999999999999999863221 1111112233444555555444 8999996554
No 354
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=8.5e-08 Score=82.90 Aligned_cols=118 Identities=19% Similarity=0.235 Sum_probs=84.4
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHHcCCCC--------------CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcch
Q 027438 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFY--------------PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75 (223)
Q Consensus 10 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 75 (223)
..+...+|+++-+...|||||+..|+..+-- -...++-|.+.....+..-...+.+.++|+|||-+
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 3456789999999999999999999763211 11123345555555555555678899999999999
Q ss_pred hhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 027438 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131 (223)
Q Consensus 76 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~ 131 (223)
|........+-+|+.++++|+...-.-+. +..+++....+..+++|.||+|.
T Consensus 85 f~sevssas~l~d~alvlvdvvegv~~qt----~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 85 FSSEVSSASRLSDGALVLVDVVEGVCSQT----YAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhhhcCCcEEEEeeccccchhH----HHHHHHHHHccCceEEEEehhhh
Confidence 99999999999999999999987533222 22222222235678999999994
No 355
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.63 E-value=6.9e-08 Score=72.46 Aligned_cols=57 Identities=21% Similarity=0.350 Sum_probs=39.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCC-------CCCCcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYP-------NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 73 (223)
..+++++|.+|+|||||+|+|.+..... ......|++.....+.+.. .+.++||||.
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 3689999999999999999999754311 1222235566666665543 4579999993
No 356
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.62 E-value=1.7e-07 Score=74.90 Aligned_cols=59 Identities=25% Similarity=0.346 Sum_probs=43.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcc
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 74 (223)
...++|+|+|.||+|||||+|+|.+...... ....|++.....+..+. .+.++||||.-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 4568999999999999999999998765332 23335565555555543 46699999953
No 357
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.60 E-value=1.7e-07 Score=68.02 Aligned_cols=56 Identities=25% Similarity=0.275 Sum_probs=39.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 72 (223)
...+++++|.+++|||||++++.+.... ...++.+.+.....+..++ .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 4578999999999999999999975532 3334445554443333333 577999998
No 358
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.60 E-value=8.7e-08 Score=75.90 Aligned_cols=89 Identities=12% Similarity=0.151 Sum_probs=65.2
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECC---------------EEEEEEEEeCCCc
Q 027438 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING---------------KEVKAQIWDTAGQ 73 (223)
Q Consensus 9 ~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~D~~G~ 73 (223)
.+....+++.|+|-|++|||||+|+|+.....+...|..+.+.....+.+.. ....++++|++|.
T Consensus 15 gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL 94 (391)
T KOG1491|consen 15 GRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL 94 (391)
T ss_pred cCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence 3445678999999999999999999999887776667766666555554432 3456899999983
Q ss_pred ch-------hhcchHhhhcCCcEEEEEEECC
Q 027438 74 ER-------FRAVTSAYYRGAVGALLVYDIS 97 (223)
Q Consensus 74 ~~-------~~~~~~~~~~~~d~vi~v~d~~ 97 (223)
-. ..+.....++.+|+++-|+++.
T Consensus 95 vkGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 95 VKGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 22 3333444568999999988864
No 359
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.58 E-value=2.6e-07 Score=67.18 Aligned_cols=88 Identities=15% Similarity=0.039 Sum_probs=57.4
Q ss_pred hhcCCcEEEEEEECCCHhh--HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCC
Q 027438 83 YYRGAVGALLVYDISRRQT--FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALD 160 (223)
Q Consensus 83 ~~~~~d~vi~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (223)
.+..+|++++|+|+.++.+ ...+..++. .. ..+.|+++|+||+|+.+..+. ......+.+......+.+||++
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~ 79 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---KE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN 79 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHH---hc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence 4578999999999998742 223333333 22 335899999999999643221 1222223222223357899999
Q ss_pred CCCHHHHHHHHHHHH
Q 027438 161 SSNVTAAFQTVVTEI 175 (223)
Q Consensus 161 ~~~i~~~~~~l~~~~ 175 (223)
+.|++++++.+.+.+
T Consensus 80 ~~~~~~L~~~l~~~~ 94 (157)
T cd01858 80 PFGKGSLIQLLRQFS 94 (157)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999999987643
No 360
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.56 E-value=1.6e-07 Score=76.10 Aligned_cols=58 Identities=22% Similarity=0.296 Sum_probs=45.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcc
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 74 (223)
..++++|+|.|+||||||||+|.+..... ..+..|.+.....+.++.. +.|+||||.-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~-~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAK-TSNRPGTTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhccccee-eCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence 35889999999999999999999977633 3333478887877777764 6699999943
No 361
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.52 E-value=5.9e-07 Score=65.15 Aligned_cols=85 Identities=16% Similarity=0.008 Sum_probs=55.8
Q ss_pred cEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 027438 88 VGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAA 167 (223)
Q Consensus 88 d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 167 (223)
|++++|+|+.++.+... .|+.. ......++|+++|+||+|+....++ .+....+....+..++.+||+++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 78999999988765432 23331 1112236899999999998643211 11112233334556899999999999999
Q ss_pred HHHHHHHHH
Q 027438 168 FQTVVTEIY 176 (223)
Q Consensus 168 ~~~l~~~~~ 176 (223)
++.+.+...
T Consensus 77 ~~~i~~~~~ 85 (155)
T cd01849 77 ESAFTKQTN 85 (155)
T ss_pred HHHHHHHhH
Confidence 999876643
No 362
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.52 E-value=3.4e-06 Score=71.07 Aligned_cols=139 Identities=19% Similarity=0.300 Sum_probs=86.3
Q ss_pred cccccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCC-Ccce------------------------------------
Q 027438 6 EEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK-STIG------------------------------------ 48 (223)
Q Consensus 6 ~~~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~------------------------------------ 48 (223)
.-+...+..++|+|+|+..+||||.+..+....+.+... ...+
T Consensus 300 ~sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~L 379 (980)
T KOG0447|consen 300 ASYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAAL 379 (980)
T ss_pred ccccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHH
Confidence 345566788999999999999999999886543322111 0000
Q ss_pred -----------------eeeEEEEEEECCE-EEEEEEEeCCCc-------------chhhcchHhhhcCCcEEEEEEECC
Q 027438 49 -----------------VEFQTQKMDINGK-EVKAQIWDTAGQ-------------ERFRAVTSAYYRGAVGALLVYDIS 97 (223)
Q Consensus 49 -----------------~~~~~~~~~~~~~-~~~~~l~D~~G~-------------~~~~~~~~~~~~~~d~vi~v~d~~ 97 (223)
+........+.|. .-++.+.|.||. +..-.+..++..+++++|+|+--.
T Consensus 380 R~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG 459 (980)
T KOG0447|consen 380 RHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG 459 (980)
T ss_pred HHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC
Confidence 0011111222221 224779999992 123345677889999999998643
Q ss_pred CH-hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH
Q 027438 98 RR-QTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAE 147 (223)
Q Consensus 98 ~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~ 147 (223)
.- .....+..... ..-+.+...|+|+||.|+.+.+-.+...++.+..
T Consensus 460 SVDAERSnVTDLVs---q~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 460 SVDAERSIVTDLVS---QMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred CcchhhhhHHHHHH---hcCCCCCeeEEEEeecchhhhccCCHHHHHHHHh
Confidence 32 12223333333 3345578899999999999877777777777654
No 363
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.50 E-value=3.7e-06 Score=64.72 Aligned_cols=88 Identities=17% Similarity=0.030 Sum_probs=53.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCCcceeeeEEEEEEEC---CEEEEEEEEeCCCcchhhc------c
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARD--EFYPNSKSTIGVEFQTQKMDIN---GKEVKAQIWDTAGQERFRA------V 79 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~D~~G~~~~~~------~ 79 (223)
..+..-|.|+|++++|||+|+|.|++. .+...... ..++.....+... +....+.++||+|..+... .
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~-~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~ 82 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTS-QQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDA 82 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCC-CCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhh
Confidence 445677999999999999999999987 54322221 1111112222111 2346788999999654322 1
Q ss_pred hHhhhcC--CcEEEEEEECCCH
Q 027438 80 TSAYYRG--AVGALLVYDISRR 99 (223)
Q Consensus 80 ~~~~~~~--~d~vi~v~d~~~~ 99 (223)
....+.. ++++|+..+....
T Consensus 83 ~~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 83 RLFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHHHhCEEEEeccCccc
Confidence 2222333 8888888777653
No 364
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.50 E-value=4.4e-07 Score=65.81 Aligned_cols=58 Identities=22% Similarity=0.289 Sum_probs=38.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 73 (223)
....+++++|.+|+|||||+|+|.+........ ..+++......... ..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~-~~~~t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGN-VPGTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccC-CCCcccceEEEEec---CCEEEEECCCC
Confidence 456889999999999999999999865322111 11333333334343 24679999983
No 365
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=2.3e-07 Score=75.48 Aligned_cols=119 Identities=19% Similarity=0.246 Sum_probs=92.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcC--------CCCCCCC--------CcceeeeEEEEEEECCEEEEEEEEeCCCcch
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARD--------EFYPNSK--------STIGVEFQTQKMDINGKEVKAQIWDTAGQER 75 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~--------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 75 (223)
....+|.|+.+..+||||.-.+++.- .+..... ..-|.+....-+.++..+.++.++||||+-+
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd 114 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD 114 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence 44578999999999999999888652 1111100 1125667777788888999999999999999
Q ss_pred hhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027438 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134 (223)
Q Consensus 76 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~ 134 (223)
|.-..+..++-.|+++.|||.+..-.-+.+.-|.+. ...++|-+...||+|...+
T Consensus 115 f~leverclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred EEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhhhh
Confidence 999999999999999999999987665666667544 3347899999999998654
No 366
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=1.6e-06 Score=68.99 Aligned_cols=148 Identities=18% Similarity=0.152 Sum_probs=94.8
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHHcC----------CCCC----CCCCcceeeeEEEEEEECCEEEEEEEEeCCCcc
Q 027438 9 RAEDYLFKVVLIGDSAVGKSNLLARFARD----------EFYP----NSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74 (223)
Q Consensus 9 ~~~~~~~~v~v~G~~~~GKSsli~~l~~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 74 (223)
.++.+..+|.-+|+..-|||||-.+++.- .+.. .....-|.+.....+.+.-......=.|+||+.
T Consensus 49 ~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHA 128 (449)
T KOG0460|consen 49 VRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHA 128 (449)
T ss_pred ccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchH
Confidence 45677899999999999999998877531 1110 001222455555555554433444468999999
Q ss_pred hhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc---ccCHHHHHHHHHHcC-
Q 027438 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR---EVTTAEGKALAEAQG- 150 (223)
Q Consensus 75 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~---~~~~~~~~~~~~~~~- 150 (223)
+|-..+..-..+-|+.|+|+..+|..--+. +..+-..++.. -..+++.+||.|+.+.. ++-..+++++...++
T Consensus 129 DYIKNMItGaaqMDGaILVVaatDG~MPQT-rEHlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf 205 (449)
T KOG0460|consen 129 DYIKNMITGAAQMDGAILVVAATDGPMPQT-REHLLLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF 205 (449)
T ss_pred HHHHHhhcCccccCceEEEEEcCCCCCcch-HHHHHHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 998888877789999999999999432111 11121222221 14466669999998533 344566777777665
Q ss_pred ----CeEEEeccC
Q 027438 151 ----LFFMETSAL 159 (223)
Q Consensus 151 ----~~~~~~Sa~ 159 (223)
+|++.-||.
T Consensus 206 ~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 206 DGDNTPVIRGSAL 218 (449)
T ss_pred CCCCCCeeecchh
Confidence 457776553
No 367
>PRK12288 GTPase RsgA; Reviewed
Probab=98.46 E-value=3.2e-07 Score=74.95 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=36.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCC------CcceeeeEEEEEEECCEEEEEEEEeCCCcchhh
Q 027438 17 VVLIGDSAVGKSNLLARFARDEFYPNSK------STIGVEFQTQKMDINGKEVKAQIWDTAGQERFR 77 (223)
Q Consensus 17 v~v~G~~~~GKSsli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 77 (223)
++|+|.+|||||||||+|.+........ ..-.++.....+.+++.. .|+||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 7899999999999999999764322111 111123334444454333 389999976653
No 368
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.46 E-value=2.4e-06 Score=69.02 Aligned_cols=149 Identities=19% Similarity=0.207 Sum_probs=82.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCC-------CC--------------cceeeeEEEEEEE-------------C
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNS-------KS--------------TIGVEFQTQKMDI-------------N 59 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~-------~~--------------~~~~~~~~~~~~~-------------~ 59 (223)
.--|+++|++|+||||++..|.+.-..... +. ..+..+....... .
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 457889999999999999888653111100 00 0011111100000 0
Q ss_pred CEEEEEEEEeCCCcchhhcc----hHhh--------hcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEe
Q 027438 60 GKEVKAQIWDTAGQERFRAV----TSAY--------YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGN 127 (223)
Q Consensus 60 ~~~~~~~l~D~~G~~~~~~~----~~~~--------~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n 127 (223)
...+.+.|+||||....... ...+ -..++..++|+|++... +.+.. ...+... -.+.-+|+|
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~---~~~~giIlT 267 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA---VGLTGIILT 267 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh---CCCCEEEEE
Confidence 13456889999996442221 1111 12477889999998642 22222 2222211 134578899
Q ss_pred CCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027438 128 KSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 128 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
|.|... ..-.+...+...++|+..++ +|++++++-..=.+.
T Consensus 268 KlD~t~----~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~~~~~~ 308 (318)
T PRK10416 268 KLDGTA----KGGVVFAIADELGIPIKFIG--VGEGIDDLQPFDAEE 308 (318)
T ss_pred CCCCCC----CccHHHHHHHHHCCCEEEEe--CCCChhhCccCCHHH
Confidence 999543 13344555667799988888 778887765443333
No 369
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.43 E-value=5.7e-07 Score=72.41 Aligned_cols=156 Identities=16% Similarity=0.144 Sum_probs=86.2
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCC------------------CCCCcceeee-------------------
Q 027438 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYP------------------NSKSTIGVEF------------------- 51 (223)
Q Consensus 9 ~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~------------------- 51 (223)
+.+=.+++|+|+|+..+|||||+..|+++.... ......|.+.
T Consensus 128 ~~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~ 207 (641)
T KOG0463|consen 128 EKDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHN 207 (641)
T ss_pred CccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCc
Confidence 334457999999999999999998887643321 1111111111
Q ss_pred -EEEEEEECCEEEEEEEEeCCCcchhhcchH--hhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 027438 52 -QTQKMDINGKEVKAQIWDTAGQERFRAVTS--AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNK 128 (223)
Q Consensus 52 -~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~--~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 128 (223)
....+ ..+..-.++++|.+|++.|...+- ..-.-.|...+++-.+..- -... .+.+.-......|+++|+||
T Consensus 208 LdWvkI-ce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI--iGmT--KEHLgLALaL~VPVfvVVTK 282 (641)
T KOG0463|consen 208 LDWVKI-CEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI--IGMT--KEHLGLALALHVPVFVVVTK 282 (641)
T ss_pred ccceee-ccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc--eecc--HHhhhhhhhhcCcEEEEEEe
Confidence 00111 112233478999999999865432 2223467777777665421 0000 11111112236899999999
Q ss_pred CCCCCCcccCH--HHHHH--------------------------HHHHcCCeEEEeccCCCCCHHHHHH
Q 027438 129 SDLKDAREVTT--AEGKA--------------------------LAEAQGLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 129 ~D~~~~~~~~~--~~~~~--------------------------~~~~~~~~~~~~Sa~~~~~i~~~~~ 169 (223)
+|+..++.+.. ..... |..+.-||+|.+|..+|.|+..+..
T Consensus 283 IDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkm 351 (641)
T KOG0463|consen 283 IDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKM 351 (641)
T ss_pred eccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHH
Confidence 99865322110 11111 1122235789999999999875543
No 370
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.43 E-value=1.1e-06 Score=64.87 Aligned_cols=91 Identities=18% Similarity=0.050 Sum_probs=59.9
Q ss_pred cchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEec
Q 027438 78 AVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETS 157 (223)
Q Consensus 78 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (223)
......+.++|++++|+|+.++...... .++..+ .+.|+++|+||+|+..... .....++....+..++.+|
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi~iS 82 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVLFVN 82 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEEEEE
Confidence 3445567899999999999876442211 122221 1478999999999864211 1111122233345689999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 027438 158 ALDSSNVTAAFQTVVTEIY 176 (223)
Q Consensus 158 a~~~~~i~~~~~~l~~~~~ 176 (223)
|+++.|++++.+.+...+.
T Consensus 83 a~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 83 AKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred CCCcccHHHHHHHHHHHHH
Confidence 9999999999999887653
No 371
>PRK12289 GTPase RsgA; Reviewed
Probab=98.42 E-value=4.3e-07 Score=74.22 Aligned_cols=56 Identities=25% Similarity=0.303 Sum_probs=36.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCc------ceeeeEEEEEEECCEEEEEEEEeCCCcch
Q 027438 17 VVLIGDSAVGKSNLLARFARDEFYPNSKST------IGVEFQTQKMDINGKEVKAQIWDTAGQER 75 (223)
Q Consensus 17 v~v~G~~~~GKSsli~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 75 (223)
++|+|++|||||||||+|.+.......... -.++.....+..++.. .|+||||...
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~ 236 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ 236 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence 799999999999999999975433211111 0133444444454333 4999999744
No 372
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.40 E-value=5.1e-07 Score=71.20 Aligned_cols=59 Identities=24% Similarity=0.280 Sum_probs=39.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC------CCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhh
Q 027438 16 KVVLIGDSAVGKSNLLARFARDE------FYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFR 77 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 77 (223)
-.+++|++|+|||||+|+|.... +.......-.++.....+.+++.++ ++||||..++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCccC
Confidence 46799999999999999998632 2222222223445566677765555 89999976543
No 373
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.39 E-value=3e-06 Score=67.05 Aligned_cols=101 Identities=14% Similarity=0.018 Sum_probs=59.8
Q ss_pred EEEEEEEeCCCcchhhcchH----h---hh-----cCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q 027438 62 EVKAQIWDTAGQERFRAVTS----A---YY-----RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKS 129 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~----~---~~-----~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 129 (223)
.+.+.|+||||........- . .. ..+|.+++|+|.+... +.+. +...+.+.. .+.-+|.||.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~~~~f~~~~---~~~g~IlTKl 227 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-QAKVFNEAV---GLTGIILTKL 227 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-HHHHHHhhC---CCCEEEEEcc
Confidence 36788999999654322211 1 11 2388999999997532 2222 222222221 2468889999
Q ss_pred CCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 027438 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 130 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
|... ..-.+..+....+.|+..++ +|.+++++-..=.+.
T Consensus 228 De~~----~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~~~~~ 266 (272)
T TIGR00064 228 DGTA----KGGIILSIAYELKLPIKFIG--VGEKIDDLAPFDADW 266 (272)
T ss_pred CCCC----CccHHHHHHHHHCcCEEEEe--CCCChHhCccCCHHH
Confidence 9653 23344555566789987777 777777765443333
No 374
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=5.8e-06 Score=63.19 Aligned_cols=156 Identities=21% Similarity=0.286 Sum_probs=96.1
Q ss_pred eEEEEEcCCCC--CHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEE----EEEEeCCCcchhhcchHhhhcCCc
Q 027438 15 FKVVLIGDSAV--GKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVK----AQIWDTAGQERFRAVTSAYYRGAV 88 (223)
Q Consensus 15 ~~v~v~G~~~~--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~D~~G~~~~~~~~~~~~~~~d 88 (223)
.-++|+|..|+ ||.+|+.+|....+.........+.+. .++++.+++. +.+.-.. +.+.-.........-
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~h--gwtid~kyysadi~lcishic--de~~lpn~~~a~pl~ 80 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFH--GWTIDNKYYSADINLCISHIC--DEKFLPNAEIAEPLQ 80 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeee--ceEecceeeecceeEEeeccc--chhccCCccccccee
Confidence 45789999998 999999999887775544433223332 3344444332 2222211 111111122234566
Q ss_pred EEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCC---------------------------------
Q 027438 89 GALLVYDISRRQTFDSIGRWLNELHTHSDMNVV-TILVGNKSDLKDA--------------------------------- 134 (223)
Q Consensus 89 ~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~D~~~~--------------------------------- 134 (223)
+++++||.+...++..++.|+..-... ... .+.|+||.|....
T Consensus 81 a~vmvfdlse~s~l~alqdwl~htdin---sfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiset 157 (418)
T KOG4273|consen 81 AFVMVFDLSEKSGLDALQDWLPHTDIN---SFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISET 157 (418)
T ss_pred eEEEEEeccchhhhHHHHhhccccccc---cchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccc
Confidence 889999999999999999998753221 122 3556999986430
Q ss_pred -----------cccCHHHHHHHHHHcCCeEEEeccC------------CCCCHHHHHHHHHHHHHH
Q 027438 135 -----------REVTTAEGKALAEAQGLFFMETSAL------------DSSNVTAAFQTVVTEIYN 177 (223)
Q Consensus 135 -----------~~~~~~~~~~~~~~~~~~~~~~Sa~------------~~~~i~~~~~~l~~~~~~ 177 (223)
.-.....+.+++..+++.+++.++. +..|+..+|-+|-..+-.
T Consensus 158 egssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwp 223 (418)
T KOG4273|consen 158 EGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWP 223 (418)
T ss_pred ccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCc
Confidence 0012334567888899999998874 335788888777655543
No 375
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.38 E-value=1.6e-06 Score=61.92 Aligned_cols=76 Identities=18% Similarity=0.193 Sum_probs=52.3
Q ss_pred HhhhcCCcEEEEEEECCCHhhHH--HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEecc
Q 027438 81 SAYYRGAVGALLVYDISRRQTFD--SIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSA 158 (223)
Q Consensus 81 ~~~~~~~d~vi~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (223)
...+..+|++++|+|+.++.+.. .+..|+... . .++|+++|+||+|+.+... .....+.....+..++.+||
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence 34568899999999999876533 445555432 1 3689999999999864322 22334445566778999999
Q ss_pred CCCC
Q 027438 159 LDSS 162 (223)
Q Consensus 159 ~~~~ 162 (223)
.++.
T Consensus 80 ~~~~ 83 (141)
T cd01857 80 LKEN 83 (141)
T ss_pred cCCC
Confidence 8764
No 376
>PRK14974 cell division protein FtsY; Provisional
Probab=98.37 E-value=7.9e-06 Score=66.39 Aligned_cols=100 Identities=11% Similarity=-0.001 Sum_probs=59.1
Q ss_pred EEEEEEeCCCcchhhcc----hHhhh--cCCcEEEEEEECCCHhh-HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027438 63 VKAQIWDTAGQERFRAV----TSAYY--RGAVGALLVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~----~~~~~--~~~d~vi~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~ 135 (223)
+.+.|+||+|....... ...+. ...|.+++|+|+..... .+.+..+... -..--+|+||.|....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~-------~~~~giIlTKlD~~~~- 294 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEA-------VGIDGVILTKVDADAK- 294 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhc-------CCCCEEEEeeecCCCC-
Confidence 45889999996542211 12221 35788899999976432 2222222221 1235788999997532
Q ss_pred ccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027438 136 EVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
.-.+..++...+.|+..++ +|.+++++...=...+
T Consensus 295 ---~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~~~~~~ 329 (336)
T PRK14974 295 ---GGAALSIAYVIGKPILFLG--VGQGYDDLIPFDPDWF 329 (336)
T ss_pred ---ccHHHHHHHHHCcCEEEEe--CCCChhhcccCCHHHH
Confidence 2233444556789987777 7888887765433333
No 377
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.31 E-value=1.2e-06 Score=68.26 Aligned_cols=58 Identities=24% Similarity=0.248 Sum_probs=36.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCC------CCcceeeeEEEEEEECCEEEEEEEEeCCCcchh
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNS------KSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF 76 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 76 (223)
-.++++|++|||||||+|+|.+....... .....++.....+...+ . .++||||...+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~-~---~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG-G---LIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC-c---EEEeCCCcccc
Confidence 36789999999999999999975432211 11111333333444433 2 49999996543
No 378
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.31 E-value=4.2e-06 Score=66.55 Aligned_cols=100 Identities=16% Similarity=0.114 Sum_probs=64.5
Q ss_pred CCcch-hhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc
Q 027438 71 AGQER-FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQ 149 (223)
Q Consensus 71 ~G~~~-~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~ 149 (223)
|||.. ........+..+|++++|+|+..+.+... .++.... .+.|+++|+||+|+.+.... ....+.....
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~ 76 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPAVT--KQWLKYFEEK 76 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHHHH--HHHHHHHHHc
Confidence 45432 23345567789999999999987654221 1111111 15799999999998642111 1111122334
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027438 150 GLFFMETSALDSSNVTAAFQTVVTEIYNI 178 (223)
Q Consensus 150 ~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 178 (223)
+.+++.+||+++.|++++.+.+.+.+.+.
T Consensus 77 ~~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 77 GIKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 56789999999999999999988766443
No 379
>PRK13796 GTPase YqeH; Provisional
Probab=98.31 E-value=4.4e-06 Score=69.00 Aligned_cols=94 Identities=24% Similarity=0.290 Sum_probs=62.2
Q ss_pred chhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHH----HHHHHc
Q 027438 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGK----ALAEAQ 149 (223)
Q Consensus 74 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~----~~~~~~ 149 (223)
+.+...........+++++|+|+.+.. ..|...+..... +.|+++|+||+|+... ....+... .+++..
T Consensus 57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 57 DDFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence 345554444433344899999997733 234444444332 5789999999999752 33333333 335556
Q ss_pred CC---eEEEeccCCCCCHHHHHHHHHHH
Q 027438 150 GL---FFMETSALDSSNVTAAFQTVVTE 174 (223)
Q Consensus 150 ~~---~~~~~Sa~~~~~i~~~~~~l~~~ 174 (223)
++ .++.+||+++.|++++++.|.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 65 58999999999999999998653
No 380
>PRK13796 GTPase YqeH; Provisional
Probab=98.28 E-value=1.4e-06 Score=71.89 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=38.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC----CCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcc
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEF----YPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 74 (223)
.+++++|.+|||||||+|+|..... ........|++.....+.+++.. .++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~---~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGS---FLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCc---EEEECCCcc
Confidence 4799999999999999999986431 11122233555555555555433 499999964
No 381
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=1.6e-06 Score=73.56 Aligned_cols=116 Identities=21% Similarity=0.179 Sum_probs=82.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCC---CCCCCC-------------CcceeeeEEEEEEECCEEEEEEEEeCCCcch
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDE---FYPNSK-------------STIGVEFQTQKMDINGKEVKAQIWDTAGQER 75 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~---~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 75 (223)
+..-+|.+.-+-.+||||+-++.+... ...... ...|++....-..+....+.+.++|||||-+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 456788899999999999988776421 100000 1112333333334445578899999999999
Q ss_pred hhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 027438 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131 (223)
Q Consensus 76 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~ 131 (223)
|.-..+..++-.|+.+++++....-.-+...-|.+.-.. +.|.|..+||+|.
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry----~vP~i~FiNKmDR 168 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRY----NVPRICFINKMDR 168 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhc----CCCeEEEEehhhh
Confidence 988889999999999999998876555555666555333 6899999999996
No 382
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.24 E-value=2.6e-06 Score=70.25 Aligned_cols=58 Identities=19% Similarity=0.331 Sum_probs=38.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCC----CCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcch
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFY----PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 75 (223)
.+|+++|.+|||||||+|+|.+.... .......|++.....+.+++. +.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCCC
Confidence 58999999999999999999974321 112222344555555555332 35999999554
No 383
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.24 E-value=3.1e-05 Score=63.76 Aligned_cols=160 Identities=18% Similarity=0.234 Sum_probs=89.4
Q ss_pred cccccCCeeeEEEEEcCCCCCHHHHHHHHHcCCCC--------------CCCCCcceeee----------EEEEEEE-CC
Q 027438 6 EEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFY--------------PNSKSTIGVEF----------QTQKMDI-NG 60 (223)
Q Consensus 6 ~~~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~----------~~~~~~~-~~ 60 (223)
+-..+..-.|=|.|+||..+||||||.+|...-.- +.+....|-+. ....+.+ ++
T Consensus 9 DIa~RT~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~ 88 (492)
T PF09547_consen 9 DIAERTGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDG 88 (492)
T ss_pred HHHHhcCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCC
Confidence 33455566788999999999999999999652111 11111111111 1123334 45
Q ss_pred EEEEEEEEeCCCc--------ch---hhcc---h---------------Hhhh-cC-CcEEEEEEECCC----HhhHHHH
Q 027438 61 KEVKAQIWDTAGQ--------ER---FRAV---T---------------SAYY-RG-AVGALLVYDISR----RQTFDSI 105 (223)
Q Consensus 61 ~~~~~~l~D~~G~--------~~---~~~~---~---------------~~~~-~~-~d~vi~v~d~~~----~~s~~~~ 105 (223)
-.+++.++|+.|- .+ .+-. | ...+ .+ .-++++.-|.+= ++.+...
T Consensus 89 ~~~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eA 168 (492)
T PF09547_consen 89 IKVKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEA 168 (492)
T ss_pred ceEEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHH
Confidence 6788899999880 00 0000 0 0011 12 235666666542 3333332
Q ss_pred -HHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccC--CCCCHHHHHHH
Q 027438 106 -GRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSAL--DSSNVTAAFQT 170 (223)
Q Consensus 106 -~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~i~~~~~~ 170 (223)
..-+.++.. -++|+|+++|-.+-. .+-..+.+.++..+++++++.+++. +.+.+..+++.
T Consensus 169 EervI~ELk~---igKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~ 231 (492)
T PF09547_consen 169 EERVIEELKE---IGKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEE 231 (492)
T ss_pred HHHHHHHHHH---hCCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHH
Confidence 333444443 379999999977743 2345677788888999998877664 33444444443
No 384
>PRK01889 GTPase RsgA; Reviewed
Probab=98.24 E-value=6e-06 Score=67.94 Aligned_cols=83 Identities=18% Similarity=0.216 Sum_probs=59.8
Q ss_pred hcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HcCCeEEEeccCCCC
Q 027438 84 YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAE-AQGLFFMETSALDSS 162 (223)
Q Consensus 84 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 162 (223)
..++|.+++|+++..+-....+..++..+... +.+.++|+||+|+.+..+ +....+.. ..+.+++.+|++++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCCc
Confidence 57899999999997554555666776665543 577899999999975311 11222222 446789999999999
Q ss_pred CHHHHHHHHH
Q 027438 163 NVTAAFQTVV 172 (223)
Q Consensus 163 ~i~~~~~~l~ 172 (223)
|++++..+|.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999998874
No 385
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.22 E-value=8.6e-06 Score=59.26 Aligned_cols=64 Identities=16% Similarity=0.135 Sum_probs=37.2
Q ss_pred EEEEEEEeCCCcchhhcchHh--------hhcCCcEEEEEEECCCHhh-HHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 027438 62 EVKAQIWDTAGQERFRAVTSA--------YYRGAVGALLVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKSDL 131 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~--------~~~~~d~vi~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piilv~nK~D~ 131 (223)
.....++|++|.......... ..-..+.+++++|+.+... ++....+..++.. .=++|+||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~------ad~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF------ADRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH------CCEEEEecccC
Confidence 345679999996544333332 1235788999999865332 1122223333332 12778999995
No 386
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.21 E-value=6.4e-06 Score=65.87 Aligned_cols=100 Identities=18% Similarity=0.146 Sum_probs=65.2
Q ss_pred CCCcch-hhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH
Q 027438 70 TAGQER-FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEA 148 (223)
Q Consensus 70 ~~G~~~-~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~ 148 (223)
.|||.. -.......+..+|++|+|+|+..+.+... .++.... . +.|+++|+||+|+.+... .+...++...
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~-~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---G-NKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---C-CCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 455433 23345566789999999999987654221 1222221 1 589999999999864211 1122222234
Q ss_pred cCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027438 149 QGLFFMETSALDSSNVTAAFQTVVTEIYN 177 (223)
Q Consensus 149 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 177 (223)
.+.+++.+|++++.|++++.+.+...+.+
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 46778999999999999999988776644
No 387
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.20 E-value=3.1e-06 Score=67.61 Aligned_cols=59 Identities=25% Similarity=0.326 Sum_probs=38.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCC------CcceeeeEEEEEEECCEEEEEEEEeCCCcchh
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSK------STIGVEFQTQKMDINGKEVKAQIWDTAGQERF 76 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 76 (223)
-.++++|++|+|||||+|.|.+........ ....++.....+...+.. .++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCcc
Confidence 468999999999999999999864332111 111133334444444333 38999997664
No 388
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.20 E-value=1.6e-06 Score=65.41 Aligned_cols=120 Identities=17% Similarity=0.172 Sum_probs=77.4
Q ss_pred EEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCH----------hhHHHHHHHHHHHhhc-CCCCCcEEEEEeCC
Q 027438 61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRR----------QTFDSIGRWLNELHTH-SDMNVVTILVGNKS 129 (223)
Q Consensus 61 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~~~~i~~~-~~~~~piilv~nK~ 129 (223)
..+.+.+.|++|+.+.+.-|.+.+.+...+++++.++.- ...+.-...+..+..+ .=.+.++|+.+||.
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence 345567899999988888899988888877777766542 1222222333333222 22367899999999
Q ss_pred CCCCC----------------cccCHHHHHHHHHHc----CC------eEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 027438 130 DLKDA----------------REVTTAEGKALAEAQ----GL------FFMETSALDSSNVTAAFQTVVTEIYNILS 180 (223)
Q Consensus 130 D~~~~----------------~~~~~~~~~~~~~~~----~~------~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 180 (223)
|+.++ .....+.+++|.... +- .--.++|.+-+||.-+|.++...++...-
T Consensus 277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L 353 (359)
T KOG0085|consen 277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 353 (359)
T ss_pred hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence 98652 223345555554322 21 12447889999999999998887765543
No 389
>PRK00098 GTPase RsgA; Reviewed
Probab=98.17 E-value=4e-06 Score=67.39 Aligned_cols=58 Identities=29% Similarity=0.315 Sum_probs=35.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCc------ceeeeEEEEEEECCEEEEEEEEeCCCcch
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKST------IGVEFQTQKMDINGKEVKAQIWDTAGQER 75 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 75 (223)
..++++|++|+|||||+|+|.+........-. ..++.....+..++.. .++||||...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~---~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGG---LLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCc---EEEECCCcCc
Confidence 35889999999999999999976432211110 0122233333444333 4899999644
No 390
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.09 E-value=3.3e-05 Score=59.50 Aligned_cols=116 Identities=19% Similarity=0.199 Sum_probs=73.0
Q ss_pred EEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHh-------hHHHHHHHHHHH----hhcCCCCCcEEEEEeCC
Q 027438 61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQ-------TFDSIGRWLNEL----HTHSDMNVVTILVGNKS 129 (223)
Q Consensus 61 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------s~~~~~~~~~~i----~~~~~~~~piilv~nK~ 129 (223)
..+.++++|++|+.+.++-|...+....++|+|...+.-. +-+.++.-+..+ .+..-..+.+|+.+||-
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 3467899999999999999999999999999999887511 111222211111 22222246789999999
Q ss_pred CCCCC------------------------------cccCHHHHHHHH--------H-----HcCCeEEEeccCCCCCHHH
Q 027438 130 DLKDA------------------------------REVTTAEGKALA--------E-----AQGLFFMETSALDSSNVTA 166 (223)
Q Consensus 130 D~~~~------------------------------~~~~~~~~~~~~--------~-----~~~~~~~~~Sa~~~~~i~~ 166 (223)
|+..+ .......++.+. . .+.|.+-.+.|.+-++|..
T Consensus 280 DllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrr 359 (379)
T KOG0099|consen 280 DLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR 359 (379)
T ss_pred HHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHH
Confidence 97320 001111122221 1 1123456688999999999
Q ss_pred HHHHHHHHHH
Q 027438 167 AFQTVVTEIY 176 (223)
Q Consensus 167 ~~~~l~~~~~ 176 (223)
+|+.....+.
T Consensus 360 VFnDcrdiIq 369 (379)
T KOG0099|consen 360 VFNDCRDIIQ 369 (379)
T ss_pred HHHHHHHHHH
Confidence 9999776553
No 391
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=2.4e-06 Score=67.00 Aligned_cols=160 Identities=18% Similarity=0.161 Sum_probs=95.9
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCCcceeee-------E------------------------EEE
Q 027438 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEF---YPNSKSTIGVEF-------Q------------------------TQK 55 (223)
Q Consensus 10 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~-------~------------------------~~~ 55 (223)
..+-.++|.-+|+...||||++.++.+-.. ..+....++... + .+.
T Consensus 34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~ 113 (466)
T KOG0466|consen 34 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCD 113 (466)
T ss_pred hheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcc
Confidence 356689999999999999999998876311 000000000000 0 000
Q ss_pred EE-ECC---EEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCC----HhhHHHHHHHHHHHhhcCCCCCcEEEEEe
Q 027438 56 MD-ING---KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISR----RQTFDSIGRWLNELHTHSDMNVVTILVGN 127 (223)
Q Consensus 56 ~~-~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~piilv~n 127 (223)
.. ..+ --..+.+.|+||++-....+..-..--|+.++++..+. |++-+.+... ++-. -+.++++-|
T Consensus 114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav--eiM~----LkhiiilQN 187 (466)
T KOG0466|consen 114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV--EIMK----LKHIIILQN 187 (466)
T ss_pred cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH--HHhh----hceEEEEec
Confidence 00 000 01236799999998765544444344677777777665 3333333211 1111 256888899
Q ss_pred CCCCCCCccc--CHHHHHHHHH---HcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027438 128 KSDLKDAREV--TTAEGKALAE---AQGLFFMETSALDSSNVTAAFQTVVTEI 175 (223)
Q Consensus 128 K~D~~~~~~~--~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 175 (223)
|+|+..+.+. ..+++..|.. ..++|++++||.-+.|++-+.+.|...+
T Consensus 188 KiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 188 KIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 9999864332 2344555544 3367899999999999999999987655
No 392
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.08 E-value=3.4e-05 Score=64.49 Aligned_cols=85 Identities=14% Similarity=-0.006 Sum_probs=47.2
Q ss_pred EEEEEEEeCCCcchhhcch----Hhh--hcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027438 62 EVKAQIWDTAGQERFRAVT----SAY--YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~----~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~ 135 (223)
.+.+.|+||+|.......+ ..+ ...++.+++|+|.+....- ......+... -.+.-+|+||.|....
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~---~~~~g~IlTKlD~~ar- 254 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDS---VDVGSVIITKLDGHAK- 254 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhc---cCCcEEEEECccCCCC-
Confidence 4678899999955432211 111 2357889999998754321 1122233222 2456888999996531
Q ss_pred ccCHHHHHHHHHHcCCeEEEe
Q 027438 136 EVTTAEGKALAEAQGLFFMET 156 (223)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~ 156 (223)
.=.+.......+.|+..+
T Consensus 255 ---gG~aLs~~~~t~~PI~fi 272 (429)
T TIGR01425 255 ---GGGALSAVAATKSPIIFI 272 (429)
T ss_pred ---ccHHhhhHHHHCCCeEEE
Confidence 222334445566665443
No 393
>PRK13695 putative NTPase; Provisional
Probab=98.08 E-value=0.00012 Score=54.17 Aligned_cols=79 Identities=9% Similarity=0.061 Sum_probs=43.5
Q ss_pred hhcCCcEEEEEEECCCHhhHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCC
Q 027438 83 YYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDS 161 (223)
Q Consensus 83 ~~~~~d~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (223)
.+..+++ +++|--.+ .+.. ..+.+.+......+.|++++.+|.... .....+....+..++++ +.
T Consensus 93 ~l~~~~~--lllDE~~~--~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~~~-------~~~~~i~~~~~~~i~~~---~~ 158 (174)
T PRK13695 93 ALEEADV--IIIDEIGK--MELKSPKFVKAVEEVLDSEKPVIATLHRRSVH-------PFVQEIKSRPGGRVYEL---TP 158 (174)
T ss_pred ccCCCCE--EEEECCCc--chhhhHHHHHHHHHHHhCCCeEEEEECchhhH-------HHHHHHhccCCcEEEEE---cc
Confidence 3456775 68884211 1111 223333333334478999999874321 22334555567777777 55
Q ss_pred CCHHHHHHHHHHHH
Q 027438 162 SNVTAAFQTVVTEI 175 (223)
Q Consensus 162 ~~i~~~~~~l~~~~ 175 (223)
+|-+++.+.++..+
T Consensus 159 ~~r~~~~~~~~~~~ 172 (174)
T PRK13695 159 ENRDSLPFEILNRL 172 (174)
T ss_pred hhhhhHHHHHHHHH
Confidence 56668888777644
No 394
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.08 E-value=6.5e-05 Score=61.83 Aligned_cols=139 Identities=14% Similarity=0.079 Sum_probs=71.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCC-C--CCCcceeeeEE---------------EEE-EEC-----------CEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYP-N--SKSTIGVEFQT---------------QKM-DIN-----------GKEVK 64 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~-~--~~~~~~~~~~~---------------~~~-~~~-----------~~~~~ 64 (223)
-.++++|++|+||||++..|....... . .......+.+. ..+ .+. -....
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 467899999999999999887532111 0 00000111100 000 000 02346
Q ss_pred EEEEeCCCcchhhcchHh---hh---cCCcEEEEEEECCCH-hhHHHHHHHHHHHhhcCCC--CCcEEEEEeCCCCCCCc
Q 027438 65 AQIWDTAGQERFRAVTSA---YY---RGAVGALLVYDISRR-QTFDSIGRWLNELHTHSDM--NVVTILVGNKSDLKDAR 135 (223)
Q Consensus 65 ~~l~D~~G~~~~~~~~~~---~~---~~~d~vi~v~d~~~~-~s~~~~~~~~~~i~~~~~~--~~piilv~nK~D~~~~~ 135 (223)
+.++||+|.......... .+ ..+.-.++|++.+.. .....+..-+......... ..+--+|.||.|-..
T Consensus 218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~-- 295 (374)
T PRK14722 218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS-- 295 (374)
T ss_pred EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC--
Confidence 789999996543322211 12 233456888888764 3444432222222111000 013467789999653
Q ss_pred ccCHHHHHHHHHHcCCeEEEec
Q 027438 136 EVTTAEGKALAEAQGLFFMETS 157 (223)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~S 157 (223)
..=.+..+....+.|+..++
T Consensus 296 --~~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 296 --NLGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred --CccHHHHHHHHHCcCeEEEe
Confidence 34445666677788855554
No 395
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.07 E-value=1.3e-05 Score=62.17 Aligned_cols=61 Identities=21% Similarity=0.461 Sum_probs=43.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCC----CcceeeeEEEEEEECCEEEEEEEEeCCC
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSK----STIGVEFQTQKMDINGKEVKAQIWDTAG 72 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~D~~G 72 (223)
.-.++|+-+|..|.||||||+.|.+..+...+. +............-.+..+.+++.||.|
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 346999999999999999999999987754333 2222222223333356778899999999
No 396
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.06 E-value=4.3e-05 Score=57.58 Aligned_cols=85 Identities=16% Similarity=0.076 Sum_probs=49.6
Q ss_pred EEEEEEeCCCcchhhcc----hHhhh--cCCcEEEEEEECCCHhh-HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027438 63 VKAQIWDTAGQERFRAV----TSAYY--RGAVGALLVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~----~~~~~--~~~d~vi~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~ 135 (223)
+.+.|+||+|....... +..++ ...+-+++|++.+.... ++.+...+..+ .+--+|.||.|...
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~-------~~~~lIlTKlDet~-- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF-------GIDGLILTKLDETA-- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS-------STCEEEEESTTSSS--
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc-------cCceEEEEeecCCC--
Confidence 45789999995543221 11111 25778899999887532 33333333221 12367799999653
Q ss_pred ccCHHHHHHHHHHcCCeEEEecc
Q 027438 136 EVTTAEGKALAEAQGLFFMETSA 158 (223)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~Sa 158 (223)
..-.+..++...+.|+-.++.
T Consensus 155 --~~G~~l~~~~~~~~Pi~~it~ 175 (196)
T PF00448_consen 155 --RLGALLSLAYESGLPISYITT 175 (196)
T ss_dssp --TTHHHHHHHHHHTSEEEEEES
T ss_pred --CcccceeHHHHhCCCeEEEEC
Confidence 334456677778998666553
No 397
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.04 E-value=7.2e-06 Score=68.52 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=44.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 72 (223)
...+.|.+||.|+|||||+||+|.|.+... ...|.|-+..-.++.+.. .+.|.|+||
T Consensus 312 ~~~vtVG~VGYPNVGKSSTINaLvG~KkVs-VS~TPGkTKHFQTi~ls~---~v~LCDCPG 368 (562)
T KOG1424|consen 312 KDVVTVGFVGYPNVGKSSTINALVGRKKVS-VSSTPGKTKHFQTIFLSP---SVCLCDCPG 368 (562)
T ss_pred CceeEEEeecCCCCchhHHHHHHhcCceee-eecCCCCcceeEEEEcCC---CceecCCCC
Confidence 336999999999999999999999987643 344556666666666665 455999999
No 398
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.03 E-value=5.5e-06 Score=62.17 Aligned_cols=42 Identities=24% Similarity=0.199 Sum_probs=30.3
Q ss_pred cCHHHHHHHHHHcCCeEEE--eccCCCCCHHHHHHHHHHHHHHH
Q 027438 137 VTTAEGKALAEAQGLFFME--TSALDSSNVTAAFQTVVTEIYNI 178 (223)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~--~Sa~~~~~i~~~~~~l~~~~~~~ 178 (223)
....-++.++....+-+|. +||.+.+-+.++++.+...+.+-
T Consensus 143 QRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG 186 (240)
T COG1126 143 QRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG 186 (240)
T ss_pred HHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 3445566666666666654 89999999999999888766443
No 399
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.02 E-value=2.4e-05 Score=57.43 Aligned_cols=136 Identities=18% Similarity=0.211 Sum_probs=66.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeC-CCc---------------------
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDT-AGQ--------------------- 73 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~-~G~--------------------- 73 (223)
+|+|.|++|+|||||+++++..-... ..+..|. ....+.-++..+-+.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~Gf--~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVGGF--YTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEEEE--EEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc-CCccceE--EeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 68999999999999999988642111 1122232 2223334555555666666 331
Q ss_pred -chhhc----chHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH
Q 027438 74 -ERFRA----VTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEA 148 (223)
Q Consensus 74 -~~~~~----~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~ 148 (223)
+.+.. .....+..+| ++++|---+..+. ...|.+.+....+.+.|++.++.+.... .....+...
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~-~~~F~~~v~~~l~s~~~vi~vv~~~~~~-------~~l~~i~~~ 147 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMELK-SPGFREAVEKLLDSNKPVIGVVHKRSDN-------PFLEEIKRR 147 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCCC--CHHHHHHHHHHCTTSEEEEE--SS--S-------CCHHHHHTT
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhhc-CHHHHHHHHHHHcCCCcEEEEEecCCCc-------HHHHHHHhC
Confidence 11111 1122224556 7788865542211 1234444444444568888777665211 122445566
Q ss_pred cCCeEEEeccCCCCCH
Q 027438 149 QGLFFMETSALDSSNV 164 (223)
Q Consensus 149 ~~~~~~~~Sa~~~~~i 164 (223)
.++.+++++..+..-+
T Consensus 148 ~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 148 PDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTSEEEE--TTTCCCH
T ss_pred CCcEEEEeChhHHhhH
Confidence 6788898877665544
No 400
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.98 E-value=4.7e-05 Score=56.18 Aligned_cols=83 Identities=17% Similarity=0.075 Sum_probs=46.2
Q ss_pred EEEEEEEeCCCcchhh----cchHhhh--cCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027438 62 EVKAQIWDTAGQERFR----AVTSAYY--RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~----~~~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~ 135 (223)
.+.+.++|++|..... .....+. ...+.+++|+|...... ...+...+..... ..-+|.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~---~~~viltk~D~~~~- 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG---ITGVILTKLDGDAR- 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC---CCEEEEECCcCCCC-
Confidence 3457789999964321 1111111 34899999999865432 2233333332222 35677899997642
Q ss_pred ccCHHHHHHHHHHcCCeEE
Q 027438 136 EVTTAEGKALAEAQGLFFM 154 (223)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~ 154 (223)
...+...+...++|+.
T Consensus 155 ---~g~~~~~~~~~~~p~~ 170 (173)
T cd03115 155 ---GGAALSIRAVTGKPIK 170 (173)
T ss_pred ---cchhhhhHHHHCcCeE
Confidence 2233336666677743
No 401
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=0.0001 Score=61.80 Aligned_cols=197 Identities=15% Similarity=0.113 Sum_probs=112.8
Q ss_pred ccCCeeeEEEEEcCCCCCHHHHHHHHHcCCC------------CCCC--CCcceeeeEEEEEE----------------E
Q 027438 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEF------------YPNS--KSTIGVEFQTQKMD----------------I 58 (223)
Q Consensus 9 ~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~------------~~~~--~~~~~~~~~~~~~~----------------~ 58 (223)
.......++-|+-+...|||||-..|....- .... .+.-+++....-+. -
T Consensus 14 ~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~ 93 (842)
T KOG0469|consen 14 DKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEG 93 (842)
T ss_pred ccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCC
Confidence 3445567888999999999999999875311 1000 01112222222111 1
Q ss_pred CCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC-Cccc
Q 027438 59 NGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD-AREV 137 (223)
Q Consensus 59 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~-~~~~ 137 (223)
++..+.+.++|.||+-+|.+.....++-.|+.++|+|..+.--.+.-.-..+.+.. .+..++++||+|..- +-++
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlLELq~ 169 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALLELQL 169 (842)
T ss_pred CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHHhhcC
Confidence 34577899999999999999999999999999999998875433332222223322 455688999999531 1345
Q ss_pred CHHHHHHHHH----HcCCe--------------------EEEeccCCCCCHHHHHHHHHHHHHHHHhh-hhhhhhhhhhc
Q 027438 138 TTAEGKALAE----AQGLF--------------------FMETSALDSSNVTAAFQTVVTEIYNILSR-KVMISQELKQK 192 (223)
Q Consensus 138 ~~~~~~~~~~----~~~~~--------------------~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~-~~~~~~~~~~~ 192 (223)
+.++..+... ..++. +-.+|...|+++. +...++...+...- .......++-.
T Consensus 170 ~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFT--lrQFa~~Y~~KF~~~~~kmm~~LWg~ 247 (842)
T KOG0469|consen 170 SQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFT--LRQFAEMYAKKFGIDVRKMMNRLWGD 247 (842)
T ss_pred CHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhh--HHHHHHHHHHHhCCcHHHHHHHhhcc
Confidence 5555443322 22221 1225666666643 22223333333322 22334555555
Q ss_pred cCCCCCCceeeecCCCccc
Q 027438 193 DSSSFNGKTVVLEGEKKEA 211 (223)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~ 211 (223)
.-.-+..++.+...+....
T Consensus 248 ~~f~~ktkk~~~s~t~~~g 266 (842)
T KOG0469|consen 248 NFFNPKTKKWSKSATDAEG 266 (842)
T ss_pred cccCccCCccccccccccc
Confidence 5555666666666665554
No 402
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=3.4e-05 Score=62.85 Aligned_cols=155 Identities=18% Similarity=0.134 Sum_probs=94.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCC-------------------------------CCCCCCCcceeeeEEEEEEEC
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDE-------------------------------FYPNSKSTIGVEFQTQKMDIN 59 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 59 (223)
+...++++++|...+||||+-..+.... -...... |-+.......+.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~k--gKtvEvGrA~FE 153 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDK--GKTVEVGRAYFE 153 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhc--cceeeeeeEEEE
Confidence 4567999999999999999876664310 0011111 122222333333
Q ss_pred CEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCH---hhHHHHHH--HHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027438 60 GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRR---QTFDSIGR--WLNELHTHSDMNVVTILVGNKSDLKDA 134 (223)
Q Consensus 60 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~---~s~~~~~~--~~~~i~~~~~~~~piilv~nK~D~~~~ 134 (223)
-...++++.|+||+..|-..+..-..++|+-++|+++... ..|+.--+ ....+... ..-...|+++||+|-...
T Consensus 154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt-~gv~~lVv~vNKMddPtv 232 (501)
T KOG0459|consen 154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGVKHLIVLINKMDDPTV 232 (501)
T ss_pred ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh-hccceEEEEEEeccCCcc
Confidence 3445678999999999988887777899999999988542 23443211 11122221 124667888999997642
Q ss_pred cccCH---HHH----HHHHHHc------CCeEEEeccCCCCCHHHHHH
Q 027438 135 REVTT---AEG----KALAEAQ------GLFFMETSALDSSNVTAAFQ 169 (223)
Q Consensus 135 ~~~~~---~~~----~~~~~~~------~~~~~~~Sa~~~~~i~~~~~ 169 (223)
.++. ++. ..|.... ...|+++|..+|.++.+...
T Consensus 233 -nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 233 -NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred -CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 2222 221 2222322 23489999999999987664
No 403
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.90 E-value=0.00024 Score=59.49 Aligned_cols=139 Identities=14% Similarity=0.132 Sum_probs=73.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCccee---eeEE---------------EEEE-EC-----------CEEE
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGV---EFQT---------------QKMD-IN-----------GKEV 63 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~~~---------------~~~~-~~-----------~~~~ 63 (223)
.-.|+++|++|+||||++..|.+...........+. +.+. .... .. -...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 458999999999999999988753211000000010 0000 0000 00 0123
Q ss_pred EEEEEeCCCcchhhc----chHhhh--cCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc
Q 027438 64 KAQIWDTAGQERFRA----VTSAYY--RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV 137 (223)
Q Consensus 64 ~~~l~D~~G~~~~~~----~~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~ 137 (223)
.+.++||+|...... ....+. ....-.++|+|.+... +.+..++..+.. -.+--+|.||.|-..
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~~~~~~~~f~~----~~~~~~I~TKlDEt~---- 340 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DTLDEVISAYQG----HGIHGCIITKVDEAA---- 340 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HHHHHHHHHhcC----CCCCEEEEEeeeCCC----
Confidence 467999999554222 122221 2244578888988432 223333333322 133467889999653
Q ss_pred CHHHHHHHHHHcCCeEEEeccCCCCCH
Q 027438 138 TTAEGKALAEAQGLFFMETSALDSSNV 164 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i 164 (223)
..=.+..++...+.|+..++. |.++
T Consensus 341 ~~G~~l~~~~~~~lPi~yvt~--Gq~V 365 (420)
T PRK14721 341 SLGIALDAVIRRKLVLHYVTN--GQKV 365 (420)
T ss_pred CccHHHHHHHHhCCCEEEEEC--CCCc
Confidence 344456667777888666553 4444
No 404
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.88 E-value=0.00013 Score=57.75 Aligned_cols=88 Identities=18% Similarity=0.164 Sum_probs=64.9
Q ss_pred hcCCcEEEEEEECCCHh-hHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCC
Q 027438 84 YRGAVGALLVYDISRRQ-TFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSS 162 (223)
Q Consensus 84 ~~~~d~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (223)
..+.|-+|+++.+.+|. +...+..++-..... ++..++++||+|+.+..+...++........+.+++.+|++++.
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~ 153 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGD 153 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcc
Confidence 34577778888888775 466666666555433 57778889999998754433345566677789999999999999
Q ss_pred CHHHHHHHHHHH
Q 027438 163 NVTAAFQTVVTE 174 (223)
Q Consensus 163 ~i~~~~~~l~~~ 174 (223)
+++++.+.+..+
T Consensus 154 ~~~~l~~~l~~~ 165 (301)
T COG1162 154 GLEELAELLAGK 165 (301)
T ss_pred cHHHHHHHhcCC
Confidence 999999888543
No 405
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.88 E-value=0.00023 Score=58.82 Aligned_cols=134 Identities=18% Similarity=0.142 Sum_probs=71.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCC-------CC--------------CcceeeeEEEEE---------EEC-CEE
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPN-------SK--------------STIGVEFQTQKM---------DIN-GKE 62 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~-------~~--------------~~~~~~~~~~~~---------~~~-~~~ 62 (223)
...|+|+|++|+||||++..|...-.... .+ ...+.......- ... ...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 36799999999999999998864211000 00 000111110000 000 013
Q ss_pred EEEEEEeCCCcchhhcc----hHhhh--cCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027438 63 VKAQIWDTAGQERFRAV----TSAYY--RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE 136 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~----~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~ 136 (223)
+.+.|+||+|....... +..++ ...+.+++|+|.+... ..+..++..+.. -..--+|.||.|-..
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~----~~idglI~TKLDET~--- 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETA--- 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC----CCCCEEEEEcccCCC---
Confidence 56789999995442221 22222 2456788888875431 222333444332 133467889999654
Q ss_pred cCHHHHHHHHHHcCCeEEEec
Q 027438 137 VTTAEGKALAEAQGLFFMETS 157 (223)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~S 157 (223)
..=.+..++...++|+..++
T Consensus 392 -k~G~iLni~~~~~lPIsyit 411 (436)
T PRK11889 392 -SSGELLKIPAVSSAPIVLMT 411 (436)
T ss_pred -CccHHHHHHHHHCcCEEEEe
Confidence 23445566677788855544
No 406
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.88 E-value=4.1e-05 Score=64.41 Aligned_cols=84 Identities=17% Similarity=0.053 Sum_probs=48.2
Q ss_pred EEEEEeCCCcchhhcch----H--hhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc
Q 027438 64 KAQIWDTAGQERFRAVT----S--AYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV 137 (223)
Q Consensus 64 ~~~l~D~~G~~~~~~~~----~--~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~ 137 (223)
.+.|+||+|........ . .....+|.+++|+|.+... ........+.... ...-+|.||.|...
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a---- 246 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTA---- 246 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCC----
Confidence 67899999965432211 1 1234688999999987742 2222233333221 13467789999643
Q ss_pred CHHHHHHHHHHcCCeEEEec
Q 027438 138 TTAEGKALAEAQGLFFMETS 157 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~S 157 (223)
..=.+..+....+.|+..++
T Consensus 247 ~~G~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 247 KGGGALSAVAETGAPIKFIG 266 (437)
T ss_pred cccHHHHHHHHHCcCEEEEe
Confidence 23344555666788755544
No 407
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.83 E-value=0.00017 Score=60.68 Aligned_cols=87 Identities=17% Similarity=0.041 Sum_probs=50.1
Q ss_pred EEEEEEEeCCCcchhhcchH----hh--hcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027438 62 EVKAQIWDTAGQERFRAVTS----AY--YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~----~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~ 135 (223)
.+.+.|+||+|........- .+ ...++.+++|+|.+.. .....+...+.... ...-+|.||.|...
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v---~i~giIlTKlD~~~-- 253 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL---GLTGVVLTKLDGDA-- 253 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC---CCCEEEEeCccCcc--
Confidence 35688999999543222111 11 2357888999998754 23333344443222 23467799999542
Q ss_pred ccCHHHHHHHHHHcCCeEEEecc
Q 027438 136 EVTTAEGKALAEAQGLFFMETSA 158 (223)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~Sa 158 (223)
..-.+..++...++|+..+..
T Consensus 254 --~~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 254 --RGGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred --cccHHHHHHHHHCcCEEEEeC
Confidence 222366677778888655443
No 408
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.82 E-value=0.00065 Score=55.98 Aligned_cols=133 Identities=15% Similarity=0.217 Sum_probs=71.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcce---eeeEEE---------------EEEE--C----------CEEE
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIG---VEFQTQ---------------KMDI--N----------GKEV 63 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~---~~~~~~---------------~~~~--~----------~~~~ 63 (223)
.-.|+++||.||||||-+..|............++ ++.+.. .+.+ + -..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 56789999999999999887766433111111111 111110 0000 0 1244
Q ss_pred EEEEEeCCCcchhhcch----HhhhcC--CcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc
Q 027438 64 KAQIWDTAGQERFRAVT----SAYYRG--AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV 137 (223)
Q Consensus 64 ~~~l~D~~G~~~~~~~~----~~~~~~--~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~ 137 (223)
.+.|+||.|...++... ..++.. ..-+.+|++++.. .+.+...+..+... ..--+|.||.|-..
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~----~i~~~I~TKlDET~---- 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF----PIDGLIFTKLDETT---- 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC----CcceeEEEcccccC----
Confidence 68899999966654433 333332 3345667777654 23444444444322 12356789999553
Q ss_pred CHHHHHHHHHHcCCeEEEe
Q 027438 138 TTAEGKALAEAQGLFFMET 156 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~ 156 (223)
+.=..-.+....+.|+-.+
T Consensus 353 s~G~~~s~~~e~~~PV~Yv 371 (407)
T COG1419 353 SLGNLFSLMYETRLPVSYV 371 (407)
T ss_pred chhHHHHHHHHhCCCeEEE
Confidence 3333444555666664443
No 409
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=0.00068 Score=58.09 Aligned_cols=135 Identities=16% Similarity=0.165 Sum_probs=70.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCCC---CCCcceeeeEE---------------EEEEE-C-----------CEEE
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYPN---SKSTIGVEFQT---------------QKMDI-N-----------GKEV 63 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~---------------~~~~~-~-----------~~~~ 63 (223)
.-.|+|+|++|+||||++..|...-.... .......+.+. ..+.. . -..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 45788999999999999988764211000 00000000000 00000 0 1246
Q ss_pred EEEEEeCCCcchhhcchHh---hhc--CCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC
Q 027438 64 KAQIWDTAGQERFRAVTSA---YYR--GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT 138 (223)
Q Consensus 64 ~~~l~D~~G~~~~~~~~~~---~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~ 138 (223)
.+.|+||+|.......... .+. .....++|++.+.. ...+...+..+.. ..+.-+|+||.|... .
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~----~~~~gvILTKlDEt~----~ 499 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH----AKPQGVVLTKLDETG----R 499 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh----hCCeEEEEecCcCcc----c
Confidence 7889999995443222110 011 12245667776642 3333333333322 245679999999643 3
Q ss_pred HHHHHHHHHHcCCeEEEecc
Q 027438 139 TAEGKALAEAQGLFFMETSA 158 (223)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~Sa 158 (223)
.-.+..+....+.++..++.
T Consensus 500 lG~aLsv~~~~~LPI~yvt~ 519 (559)
T PRK12727 500 FGSALSVVVDHQMPITWVTD 519 (559)
T ss_pred hhHHHHHHHHhCCCEEEEeC
Confidence 45666677778888666553
No 410
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.78 E-value=0.00036 Score=56.53 Aligned_cols=98 Identities=20% Similarity=0.216 Sum_probs=56.2
Q ss_pred EEEEEEeCCCcchhhcchHhhhc--------CCcEEEEEEECCCHhh-HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027438 63 VKAQIWDTAGQERFRAVTSAYYR--------GAVGALLVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~~--------~~d~vi~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~ 133 (223)
+...++++.|......+...+.. ..|++|-|+|+.+-.. ...+......-.. ..=++|+||.|+.+
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia-----~AD~ivlNK~Dlv~ 159 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA-----FADVIVLNKTDLVD 159 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH-----hCcEEEEecccCCC
Confidence 45668899996665444444332 3567899999987443 2223222222111 22389999999997
Q ss_pred CcccCHHHHHHHHHHc--CCeEEEeccCCCCCHHHHH
Q 027438 134 AREVTTAEGKALAEAQ--GLFFMETSALDSSNVTAAF 168 (223)
Q Consensus 134 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~ 168 (223)
+.. .+..+...... .++++.++. ...+..+++
T Consensus 160 ~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 160 AEE--LEALEARLRKLNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred HHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence 543 33444444444 456888777 334444444
No 411
>PRK10867 signal recognition particle protein; Provisional
Probab=97.74 E-value=0.0007 Score=57.00 Aligned_cols=87 Identities=16% Similarity=0.049 Sum_probs=48.7
Q ss_pred EEEEEEEeCCCcchhhc-ch---Hhh--hcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027438 62 EVKAQIWDTAGQERFRA-VT---SAY--YRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~-~~---~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~ 135 (223)
.+.+.|+||+|...... .. ..+ .-.++.+++|+|.... +........+.... ...-+|.||.|...
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~---~i~giIlTKlD~~~-- 254 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL---GLTGVILTKLDGDA-- 254 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC---CCCEEEEeCccCcc--
Confidence 35688999999543211 11 111 1256778999998753 23333333433221 12466789999542
Q ss_pred ccCHHHHHHHHHHcCCeEEEecc
Q 027438 136 EVTTAEGKALAEAQGLFFMETSA 158 (223)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~Sa 158 (223)
..-.+.......++|+..++.
T Consensus 255 --rgG~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 255 --RGGAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred --cccHHHHHHHHHCcCEEEEeC
Confidence 122356667777888655443
No 412
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.68 E-value=4e-05 Score=62.31 Aligned_cols=57 Identities=25% Similarity=0.383 Sum_probs=42.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCC
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 72 (223)
...|+|.|+|-|++||||+||+|........ ....|.+..-..+..+. .+.|+|.||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~v-g~~pGvT~smqeV~Ldk---~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNV-GNVPGVTRSMQEVKLDK---KIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccC-CCCccchhhhhheeccC---CceeccCCc
Confidence 6689999999999999999999998766332 33335655555555554 466999999
No 413
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.66 E-value=0.00022 Score=52.94 Aligned_cols=80 Identities=14% Similarity=0.114 Sum_probs=43.0
Q ss_pred EEEEEEeCCCcchhhcch--H---hhhcCCcEEEEEEECCCHhhHHHHHH-HHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027438 63 VKAQIWDTAGQERFRAVT--S---AYYRGAVGALLVYDISRRQTFDSIGR-WLNELHTHSDMNVVTILVGNKSDLKDARE 136 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~~--~---~~~~~~d~vi~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~D~~~~~~ 136 (223)
....++++.|......+. . ...-..+.+|.|+|+.+-........ +..++. .. =++|+||+|+.+..
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~-~A-----DvIvlnK~D~~~~~- 157 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA-FA-----DVIVLNKIDLVSDE- 157 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC-T------SEEEEE-GGGHHHH-
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcch-hc-----CEEEEeccccCChh-
Confidence 456688988855544441 1 11235788999999977533333322 333332 22 38899999988643
Q ss_pred cCHHHHHHHHHHc
Q 027438 137 VTTAEGKALAEAQ 149 (223)
Q Consensus 137 ~~~~~~~~~~~~~ 149 (223)
...+..++..+..
T Consensus 158 ~~i~~~~~~ir~l 170 (178)
T PF02492_consen 158 QKIERVREMIREL 170 (178)
T ss_dssp --HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 2224444444433
No 414
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.66 E-value=0.00018 Score=42.26 Aligned_cols=44 Identities=25% Similarity=0.194 Sum_probs=29.9
Q ss_pred CCcEEEEEEECCCH--hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 027438 86 GAVGALLVYDISRR--QTFDSIGRWLNELHTHSDMNVVTILVGNKSD 130 (223)
Q Consensus 86 ~~d~vi~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 130 (223)
-.++++|++|++.. .+.+.-...+..+..... ++|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 47899999999984 456666777788877765 699999999998
No 415
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.66 E-value=0.0011 Score=53.85 Aligned_cols=85 Identities=6% Similarity=0.041 Sum_probs=47.4
Q ss_pred EEEEEEeCCCcchhhcchHhhhc--------CCcEEEEEEECCCHhhH-HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027438 63 VKAQIWDTAGQERFRAVTSAYYR--------GAVGALLVYDISRRQTF-DSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~~--------~~d~vi~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~piilv~nK~D~~~ 133 (223)
....++++.|......+...+.. ..+.+|.|+|+.+-... +.......++. ..=++|+||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~------~AD~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG------YADRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH------hCCEEEEeccccCC
Confidence 44568999997766555544422 25779999999763221 11111112222 12388899999886
Q ss_pred CcccCHHHHHHHHHHc--CCeEEEec
Q 027438 134 AREVTTAEGKALAEAQ--GLFFMETS 157 (223)
Q Consensus 134 ~~~~~~~~~~~~~~~~--~~~~~~~S 157 (223)
+. +...+..+.. .++++.++
T Consensus 165 ~~----~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 165 EA----EKLRERLARINARAPVYTVV 186 (318)
T ss_pred HH----HHHHHHHHHhCCCCEEEEec
Confidence 32 3444444444 34566544
No 416
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.66 E-value=0.00055 Score=49.17 Aligned_cols=58 Identities=17% Similarity=0.131 Sum_probs=35.1
Q ss_pred EEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 027438 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSD 130 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 130 (223)
.+.+.|+||+|.... ...++..+|-+|++...+-.+...- .++ .... .--++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~-~k~--~~~~-----~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQA-IKA--GIME-----IADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHH-hhh--hHhh-----hcCEEEEeCCC
Confidence 456889999885432 2347788998888888873322221 111 1111 22378889987
No 417
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.65 E-value=0.00083 Score=60.05 Aligned_cols=144 Identities=14% Similarity=0.074 Sum_probs=75.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCC---CCcceeeeEE---------------EEEE-E-C----------CEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNS---KSTIGVEFQT---------------QKMD-I-N----------GKEVK 64 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~---~~~~~~~~~~---------------~~~~-~-~----------~~~~~ 64 (223)
--|+++|+.||||||++..|.+....... ....+.+.+. ..+. . + -..+.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 35789999999999999988764311110 0000111000 0000 0 0 12235
Q ss_pred EEEEeCCCcchhhcc----hHhh--hcCCcEEEEEEECCCH-hhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc
Q 027438 65 AQIWDTAGQERFRAV----TSAY--YRGAVGALLVYDISRR-QTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV 137 (223)
Q Consensus 65 ~~l~D~~G~~~~~~~----~~~~--~~~~d~vi~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~ 137 (223)
+.|+||+|....... .... ....+-.++|+|.+.. ..+..+..-+... .. -.+-=+|.||.|-..
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~---~~-~~i~glIlTKLDEt~---- 337 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHG---AG-EDVDGCIITKLDEAT---- 337 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhc---cc-CCCCEEEEeccCCCC----
Confidence 789999994332211 1111 1245567899998753 3344433332221 10 023467899999653
Q ss_pred CHHHHHHHHHHcCCeEEEeccCCCCCH-HHHH
Q 027438 138 TTAEGKALAEAQGLFFMETSALDSSNV-TAAF 168 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~~~ 168 (223)
..=.+..+....++|+..++ +|.+| +++.
T Consensus 338 ~~G~iL~i~~~~~lPI~yit--~GQ~VPdDL~ 367 (767)
T PRK14723 338 HLGPALDTVIRHRLPVHYVS--TGQKVPEHLE 367 (767)
T ss_pred CccHHHHHHHHHCCCeEEEe--cCCCChhhcc
Confidence 23445566677788866655 34455 4443
No 418
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.00073 Score=55.65 Aligned_cols=86 Identities=14% Similarity=0.092 Sum_probs=47.7
Q ss_pred EEEEEEeCCCcchhhcc----hHhhhc--CCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027438 63 VKAQIWDTAGQERFRAV----TSAYYR--GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE 136 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~----~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~ 136 (223)
+.+.|+||+|....... ...+.. ..+.+++|++.+. ....+...+..+.. -.+--+|.||.|...
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~~----l~i~glI~TKLDET~--- 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLAE----IPIDGFIITKMDETT--- 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcCc----CCCCEEEEEcccCCC---
Confidence 57789999996443221 122222 3466667776532 22233333333221 234477899999653
Q ss_pred cCHHHHHHHHHHcCCeEEEecc
Q 027438 137 VTTAEGKALAEAQGLFFMETSA 158 (223)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~Sa 158 (223)
..=.+..++...+.|+..++.
T Consensus 357 -~~G~~Lsv~~~tglPIsylt~ 377 (407)
T PRK12726 357 -RIGDLYTVMQETNLPVLYMTD 377 (407)
T ss_pred -CccHHHHHHHHHCCCEEEEec
Confidence 344455667777888666554
No 419
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.61 E-value=0.00063 Score=57.37 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=48.9
Q ss_pred EEEEEEeCCCcchhh----cchHhhhc---CCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 027438 63 VKAQIWDTAGQERFR----AVTSAYYR---GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~----~~~~~~~~---~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~ 135 (223)
+.+.|+||+|..... .....++. ...-+++|++.+... ..+...+..+... + +--+|.||.|...
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~~---~-~~~vI~TKlDet~-- 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSRL---P-LDGLIFTKLDETS-- 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCCC---C-CCEEEEecccccc--
Confidence 567899999964432 12233333 234567788876432 2222223332211 1 2368899999643
Q ss_pred ccCHHHHHHHHHHcCCeEEEecc
Q 027438 136 EVTTAEGKALAEAQGLFFMETSA 158 (223)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~Sa 158 (223)
..-.+..+....+.|+..++.
T Consensus 372 --~~G~i~~~~~~~~lPv~yit~ 392 (424)
T PRK05703 372 --SLGSILSLLIESGLPISYLTN 392 (424)
T ss_pred --cccHHHHHHHHHCCCEEEEeC
Confidence 233567777888998766654
No 420
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.61 E-value=0.00011 Score=58.02 Aligned_cols=62 Identities=21% Similarity=0.326 Sum_probs=39.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCC----CCCCcceeeeEEEE-EEECCEEEEEEEEeCCCc
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYP----NSKSTIGVEFQTQK-MDINGKEVKAQIWDTAGQ 73 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~l~D~~G~ 73 (223)
.+..++|+|+|-||+|||||+|++....... ....-.|++..... +.+.... .+.++||||.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 4567999999999999999999886532221 11122244443333 4443322 3679999994
No 421
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.60 E-value=0.00055 Score=48.18 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCC
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~ 38 (223)
...++|.|++|+|||+|++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999988753
No 422
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.60 E-value=0.00088 Score=51.10 Aligned_cols=62 Identities=26% Similarity=0.200 Sum_probs=37.1
Q ss_pred EEEEeC-CCcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027438 65 AQIWDT-AGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132 (223)
Q Consensus 65 ~~l~D~-~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~ 132 (223)
+.++|| +|.+++.+ ...+.+|.+|+|+|.+-. ++....+..+..... . =.++.+|+||.|-.
T Consensus 136 ~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~-sl~taeri~~L~~el-g-~k~i~~V~NKv~e~ 198 (255)
T COG3640 136 VVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYK-SLRTAERIKELAEEL-G-IKRIFVVLNKVDEE 198 (255)
T ss_pred EEEEecccchhhhcc---ccccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHh-C-CceEEEEEeeccch
Confidence 556666 34444432 344789999999999754 333333322222222 1 27899999999954
No 423
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.58 E-value=0.0047 Score=44.97 Aligned_cols=139 Identities=10% Similarity=0.074 Sum_probs=93.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEE
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 90 (223)
......|+++|..+.++..|.+++..... +.. ..+.... . +-+ |. +. ...-...|.+
T Consensus 12 ~ln~atiLLVg~e~~~~~~LA~a~l~~~~--------~~~---l~Vh~a~-s----LPL-p~--e~----~~lRprIDlI 68 (176)
T PF11111_consen 12 ELNTATILLVGTEEALLQQLAEAMLEEDK--------EFK---LKVHLAK-S----LPL-PS--EN----NNLRPRIDLI 68 (176)
T ss_pred CcceeEEEEecccHHHHHHHHHHHHhhcc--------cee---EEEEEec-c----CCC-cc--cc----cCCCceeEEE
Confidence 34578999999999999999999986211 111 1111110 0 111 10 11 1112468999
Q ss_pred EEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 027438 91 LLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 170 (223)
+|++|.....++..++.-+..+....-.+ .+.++++-....+...+...++.+++..+++|++.+.-.+..+...+-+.
T Consensus 69 VFvinl~sk~SL~~ve~SL~~vd~~fflG-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAqR 147 (176)
T PF11111_consen 69 VFVINLHSKYSLQSVEASLSHVDPSFFLG-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQR 147 (176)
T ss_pred EEEEecCCcccHHHHHHHHhhCChhhhcc-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHHH
Confidence 99999999999999988777764432223 35666666666666778899999999999999999988887665555544
Q ss_pred HHH
Q 027438 171 VVT 173 (223)
Q Consensus 171 l~~ 173 (223)
|.+
T Consensus 148 LL~ 150 (176)
T PF11111_consen 148 LLR 150 (176)
T ss_pred HHH
Confidence 443
No 424
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.57 E-value=0.00044 Score=49.14 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=59.3
Q ss_pred EEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECC
Q 027438 18 VLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDIS 97 (223)
Q Consensus 18 ~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~ 97 (223)
+.-|..|+|||++.-.+...-. .......-.+.+. ....-.+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 3557899999998655543111 1100000011100 000111667899999743 333456788999999999986
Q ss_pred CHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 027438 98 RRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132 (223)
Q Consensus 98 ~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~ 132 (223)
. .++......++.+.... ...++.+|+|+.+..
T Consensus 78 ~-~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 P-TSITDAYALIKKLAKQL-RVLNFRVVVNRAESP 110 (139)
T ss_pred h-hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence 4 34444333344443322 245778999998744
No 425
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.55 E-value=0.00072 Score=45.28 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=49.2
Q ss_pred EEEEc-CCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEE
Q 027438 17 VVLIG-DSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYD 95 (223)
Q Consensus 17 v~v~G-~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d 95 (223)
|.+.| ..|+||||+...+...-.. ...+. ..+..+.. +.+.++|+|+.... .....+..+|.+|++++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~v-------l~~d~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRV-------LLIDLDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcE-------EEEeCCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence 56677 4689999997766542211 11111 11111211 56789999986433 23367788999999998
Q ss_pred CCCHhhHHHHHHHHH
Q 027438 96 ISRRQTFDSIGRWLN 110 (223)
Q Consensus 96 ~~~~~s~~~~~~~~~ 110 (223)
.+ ..++..+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 75 445666655554
No 426
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.0004 Score=57.92 Aligned_cols=134 Identities=20% Similarity=0.201 Sum_probs=69.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC-CCCC-------CC--------------CcceeeeEEEE------EEECCEEEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDE-FYPN-------SK--------------STIGVEFQTQK------MDINGKEVKAQ 66 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~-~~~~-------~~--------------~~~~~~~~~~~------~~~~~~~~~~~ 66 (223)
.-++++|++||||||++..|.... .... .+ ...+....... -......+.+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 458899999999999998886421 0000 00 00011111000 00011245678
Q ss_pred EEeCCCcchhh-c---chHhhhc-----CCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc
Q 027438 67 IWDTAGQERFR-A---VTSAYYR-----GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREV 137 (223)
Q Consensus 67 l~D~~G~~~~~-~---~~~~~~~-----~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~ 137 (223)
++||+|..... . .+..++. ...-.++|+|.+... +.+...+..+.. --+--+|.||.|-..
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~----~~~~glIlTKLDEt~---- 373 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYES----LNYRRILLTKLDEAD---- 373 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcC----CCCCEEEEEcccCCC----
Confidence 99999954321 1 1122222 234578889987653 222222332221 123467889999653
Q ss_pred CHHHHHHHHHHcCCeEEEecc
Q 027438 138 TTAEGKALAEAQGLFFMETSA 158 (223)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~Sa 158 (223)
..=.+..++...+.|+..++.
T Consensus 374 ~~G~il~i~~~~~lPI~ylt~ 394 (432)
T PRK12724 374 FLGSFLELADTYSKSFTYLSV 394 (432)
T ss_pred CccHHHHHHHHHCCCEEEEec
Confidence 233355666777888655544
No 427
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.53 E-value=9.8e-05 Score=44.40 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 027438 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~ 37 (223)
..+|.|+.|+|||||++++.--
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988653
No 428
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.48 E-value=9.4e-05 Score=54.81 Aligned_cols=23 Identities=26% Similarity=0.680 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 027438 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~ 37 (223)
.+|+|+|+|||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 429
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.45 E-value=0.0024 Score=50.46 Aligned_cols=134 Identities=18% Similarity=0.143 Sum_probs=72.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCCCC-------CC--------------CCcceeeeEEEEEE---------E-CCEE
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARDEFYP-------NS--------------KSTIGVEFQTQKMD---------I-NGKE 62 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~~~~~-------~~--------------~~~~~~~~~~~~~~---------~-~~~~ 62 (223)
.-+++++|++|+||||++..+...-... .. ....+.......-. . ....
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 3689999999999999988775431100 00 00001111110000 0 0123
Q ss_pred EEEEEEeCCCcchhhcc----hHhhh--cCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 027438 63 VKAQIWDTAGQERFRAV----TSAYY--RGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDARE 136 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~----~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~ 136 (223)
+.+.++||+|....... +..++ ...+-+++|+|.+.. .+.+..++..+.. -.+--+|.||.|...
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~----~~~~~~I~TKlDet~--- 225 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD----IHIDGIVFTKFDETA--- 225 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC----CCCCEEEEEeecCCC---
Confidence 57789999996532211 11222 245678999998643 1233334444332 234578889999654
Q ss_pred cCHHHHHHHHHHcCCeEEEec
Q 027438 137 VTTAEGKALAEAQGLFFMETS 157 (223)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~S 157 (223)
..-.+..++...+.|+..++
T Consensus 226 -~~G~~l~~~~~~~~Pi~~it 245 (270)
T PRK06731 226 -SSGELLKIPAVSSAPIVLMT 245 (270)
T ss_pred -CccHHHHHHHHHCcCEEEEe
Confidence 23345566677788855544
No 430
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.44 E-value=0.00012 Score=50.46 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 027438 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~ 37 (223)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999863
No 431
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.44 E-value=0.0011 Score=56.38 Aligned_cols=141 Identities=16% Similarity=0.160 Sum_probs=71.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcce---eeeEE---------------EEEE-E-C----------CEEEE
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIG---VEFQT---------------QKMD-I-N----------GKEVK 64 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~---~~~~~---------------~~~~-~-~----------~~~~~ 64 (223)
--++++|++||||||++..|.+..........++ .+.+. .... . . -....
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d 336 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH 336 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence 3589999999999999998875321110000000 00000 0000 0 0 01234
Q ss_pred EEEEeCCCcchhhcc---hHhhhcC---CcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC
Q 027438 65 AQIWDTAGQERFRAV---TSAYYRG---AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVT 138 (223)
Q Consensus 65 ~~l~D~~G~~~~~~~---~~~~~~~---~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~ 138 (223)
..++||+|....... ....+.. ..-.++|+|.+... ..+......+.. ....-+|+||.|-.. .
T Consensus 337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~----~~~~g~IlTKlDet~----~ 406 (484)
T PRK06995 337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRG----PGLAGCILTKLDEAA----S 406 (484)
T ss_pred eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhcc----CCCCEEEEeCCCCcc----c
Confidence 679999994432211 1111111 22367888887532 222222222221 234467789999553 3
Q ss_pred HHHHHHHHHHcCCeEEEeccCCCCCH-HHH
Q 027438 139 TAEGKALAEAQGLFFMETSALDSSNV-TAA 167 (223)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~~ 167 (223)
.-.+..+....++|+..++ +|.+| +++
T Consensus 407 ~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL 434 (484)
T PRK06995 407 LGGALDVVIRYKLPLHYVS--NGQRVPEDL 434 (484)
T ss_pred chHHHHHHHHHCCCeEEEe--cCCCChhhh
Confidence 4455667777888866654 34455 444
No 432
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.0022 Score=53.36 Aligned_cols=91 Identities=10% Similarity=0.021 Sum_probs=50.8
Q ss_pred EEEEEEEeCCCcchhhc----chHhhhcC---CcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 027438 62 EVKAQIWDTAGQERFRA----VTSAYYRG---AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134 (223)
Q Consensus 62 ~~~~~l~D~~G~~~~~~----~~~~~~~~---~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~ 134 (223)
.+.+.++||+|...... -...++.. ..-.++|+|++... ..+...+..+.. -.+--+|.||.|-..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~----~~~~~~I~TKlDet~- 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSP----FSYKTVIFTKLDETT- 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcC----CCCCEEEEEeccCCC-
Confidence 35688999999554321 11222222 22578999998752 233333333321 124467889999653
Q ss_pred cccCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 027438 135 REVTTAEGKALAEAQGLFFMETSALDSSNV 164 (223)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 164 (223)
..=.+..++...+.|+..++ +|.++
T Consensus 327 ---~~G~~l~~~~~~~~Pi~yit--~Gq~v 351 (388)
T PRK12723 327 ---CVGNLISLIYEMRKEVSYVT--DGQIV 351 (388)
T ss_pred ---cchHHHHHHHHHCCCEEEEe--CCCCC
Confidence 23445566677788865554 34444
No 433
>PRK08118 topology modulation protein; Reviewed
Probab=97.43 E-value=0.00012 Score=53.69 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 027438 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~ 37 (223)
+|+|+|++|||||||...|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988764
No 434
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.42 E-value=0.0026 Score=45.45 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 027438 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~ 37 (223)
.++|+|++|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4689999999999999998875
No 435
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.42 E-value=0.0016 Score=42.47 Aligned_cols=69 Identities=20% Similarity=0.149 Sum_probs=43.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcc-hHhhhcCCcEEEEEEE
Q 027438 17 VVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAV-TSAYYRGAVGALLVYD 95 (223)
Q Consensus 17 v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-~~~~~~~~d~vi~v~d 95 (223)
+++.|..|+||||+...+...-... +.. ...++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~------g~~----v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR------GKR----VLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC------CCe----EEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 6788999999999988776532111 111 11122 5669999985443221 1455568899999998
Q ss_pred CCCH
Q 027438 96 ISRR 99 (223)
Q Consensus 96 ~~~~ 99 (223)
....
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 8654
No 436
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.39 E-value=0.0011 Score=52.79 Aligned_cols=105 Identities=17% Similarity=0.288 Sum_probs=60.8
Q ss_pred cCCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcch--------------
Q 027438 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER-------------- 75 (223)
Q Consensus 10 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------------- 75 (223)
+...-..++|+|++|.|||++++++..... +..+.. + ..+.+..+.+|....
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp-~~~d~~-~------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHP-PQSDED-A------------ERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCC-CCCCCC-C------------ccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 344457899999999999999999997542 222211 1 122344555544111
Q ss_pred ----------hhcchHhhhcCCcEEEEEEECCCH---hhHHHHHHHHHHHhhc-CCCCCcEEEEEeC
Q 027438 76 ----------FRAVTSAYYRGAVGALLVYDISRR---QTFDSIGRWLNELHTH-SDMNVVTILVGNK 128 (223)
Q Consensus 76 ----------~~~~~~~~~~~~d~vi~v~d~~~~---~s~~~~~~~~~~i~~~-~~~~~piilv~nK 128 (223)
........++...+=++++|--+. .+....+..++.++.. ...++|+|.|||.
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 111122455667777899997652 2333334444444433 2347999999974
No 437
>PRK07261 topology modulation protein; Provisional
Probab=97.38 E-value=0.00015 Score=53.39 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 027438 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~ 37 (223)
+|+|+|++|||||||.+.|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999988653
No 438
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.36 E-value=0.00015 Score=51.46 Aligned_cols=20 Identities=40% Similarity=0.694 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q 027438 17 VVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 17 v~v~G~~~~GKSsli~~l~~ 36 (223)
|+++|+||||||||++.|..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999884
No 439
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.36 E-value=0.0014 Score=55.07 Aligned_cols=53 Identities=19% Similarity=0.157 Sum_probs=33.0
Q ss_pred hhcchHhhhcCCcEEEEEEEC-CCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 027438 76 FRAVTSAYYRGAVGALLVYDI-SRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSD 130 (223)
Q Consensus 76 ~~~~~~~~~~~~d~vi~v~d~-~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 130 (223)
.-.+....+++++++ ++|- +.--+..++..++..+......++-+|+|-.|.+
T Consensus 148 RVEIlKaLyr~a~iL--ILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~ 201 (501)
T COG3845 148 RVEILKALYRGARLL--ILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK 201 (501)
T ss_pred HHHHHHHHhcCCCEE--EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 444566677888855 4553 2223445556666666655556788888888766
No 440
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.35 E-value=0.00095 Score=50.07 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 027438 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~ 36 (223)
+-++|+||.||||||+.+.+..
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred eeEEEEccCCCCcchHHHHHHH
Confidence 4578999999999999998865
No 441
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.31 E-value=0.00075 Score=49.58 Aligned_cols=142 Identities=23% Similarity=0.342 Sum_probs=76.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCc---------chhhcchHhhhcC
Q 027438 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ---------ERFRAVTSAYYRG 86 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~---------~~~~~~~~~~~~~ 86 (223)
-|.|+|.+|||||||++++.-.+.+ + ...+.++++.+.+. -|-.|. +..+......+.+
T Consensus 34 VisIIGsSGSGKSTfLRCiN~LE~P-----~------~G~I~v~geei~~k-~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~ 101 (256)
T COG4598 34 VISIIGSSGSGKSTFLRCINFLEKP-----S------AGSIRVNGEEIRLK-RDKDGQLKPADKRQLQRLRTRLGMVFQH 101 (256)
T ss_pred EEEEecCCCCchhHHHHHHHhhcCC-----C------CceEEECCeEEEee-eCCCCCeeeCCHHHHHHHHHHhhHhhhh
Confidence 3679999999999999988654322 1 11233444443321 233331 1111111111111
Q ss_pred -------------CcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCC-----CCCCcccCHHHHHHHHHH
Q 027438 87 -------------AVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSD-----LKDAREVTTAEGKALAEA 148 (223)
Q Consensus 87 -------------~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D-----~~~~~~~~~~~~~~~~~~ 148 (223)
..+=+-|+-++..+..+....++..+.- ..|.| +....+.....++.++..
T Consensus 102 FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi-----------~ek~~~YP~~LSGGQQQR~aIARaLame 170 (256)
T COG4598 102 FNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGI-----------AEKADAYPAHLSGGQQQRVAIARALAME 170 (256)
T ss_pred cchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCc-----------hhhhhcCccccCchHHHHHHHHHHHhcC
Confidence 1122344455555555555555555432 22333 122233344556666666
Q ss_pred cCCeEEE--eccCCCCCHHHHHHHHHHHHHHHHh
Q 027438 149 QGLFFME--TSALDSSNVTAAFQTVVTEIYNILS 180 (223)
Q Consensus 149 ~~~~~~~--~Sa~~~~~i~~~~~~l~~~~~~~~~ 180 (223)
..+-+|. +||.+.+-+.+++..+...+.+-+.
T Consensus 171 P~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrT 204 (256)
T COG4598 171 PEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRT 204 (256)
T ss_pred CceEeecCCcccCCHHHHHHHHHHHHHHHHhCCe
Confidence 6666664 8999999999999988877755444
No 442
>PRK01889 GTPase RsgA; Reviewed
Probab=97.30 E-value=0.00027 Score=58.25 Aligned_cols=25 Identities=40% Similarity=0.586 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEF 39 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~ 39 (223)
-+++|+|.+|+|||||++.|.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 4789999999999999999997533
No 443
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.24 E-value=0.00031 Score=43.45 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 027438 17 VVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 17 v~v~G~~~~GKSsli~~l~~~ 37 (223)
|++.|++|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988864
No 444
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.21 E-value=0.0051 Score=45.57 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 027438 16 KVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~~ 38 (223)
.++|+|+.|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 67899999999999999888753
No 445
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.20 E-value=0.00031 Score=49.56 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 027438 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~ 37 (223)
.++|+|+.|+|||||++.+.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 5789999999999999988875
No 446
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.19 E-value=0.0004 Score=53.48 Aligned_cols=22 Identities=45% Similarity=0.567 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcCC
Q 027438 17 VVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 17 v~v~G~~~~GKSsli~~l~~~~ 38 (223)
|+|+|++|+|||||++.+.|-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999887743
No 447
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.17 E-value=0.00024 Score=51.86 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 027438 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~ 37 (223)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999864
No 448
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.17 E-value=0.00015 Score=59.06 Aligned_cols=84 Identities=17% Similarity=0.194 Sum_probs=50.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchh--hcchHhhhcCCc
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF--RAVTSAYYRGAV 88 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--~~~~~~~~~~~d 88 (223)
+...|-|.++|.|++||||+||+|....+... .|-.|-+....++..- .++-|+|+||.--. ..-....++
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkv-APIpGETKVWQYItLm---krIfLIDcPGvVyps~dset~ivLk--- 376 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKV-APIPGETKVWQYITLM---KRIFLIDCPGVVYPSSDSETDIVLK--- 376 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccc-cCCCCcchHHHHHHHH---hceeEecCCCccCCCCCchHHHHhh---
Confidence 45569999999999999999999998766432 2222322222222112 24569999994322 223333333
Q ss_pred EEEEEEECCCHhh
Q 027438 89 GALLVYDISRRQT 101 (223)
Q Consensus 89 ~vi~v~d~~~~~s 101 (223)
+++=|=.+.+|+.
T Consensus 377 GvVRVenv~~pe~ 389 (572)
T KOG2423|consen 377 GVVRVENVKNPED 389 (572)
T ss_pred ceeeeeecCCHHH
Confidence 4566777777654
No 449
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.16 E-value=0.00045 Score=52.80 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 027438 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~ 37 (223)
-|+|+|++|||||||++-+-+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3689999999999999977654
No 450
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.15 E-value=0.0042 Score=50.95 Aligned_cols=99 Identities=20% Similarity=0.209 Sum_probs=53.4
Q ss_pred EEEEEEeCCCcchhhcchHhhh-------cCCcEEEEEEECCCHhh--H-------H-------------HHHHH-HHHH
Q 027438 63 VKAQIWDTAGQERFRAVTSAYY-------RGAVGALLVYDISRRQT--F-------D-------------SIGRW-LNEL 112 (223)
Q Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~-------~~~d~vi~v~d~~~~~s--~-------~-------------~~~~~-~~~i 112 (223)
....++++.|......+...+. -..|++|.|+|+.+-.. + . .+..+ ..++
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 3466899999766555554431 14677999999975321 0 0 01111 2222
Q ss_pred hhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cC--CeEEEeccCCCCCHHHHHHH
Q 027438 113 HTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEA-QG--LFFMETSALDSSNVTAAFQT 170 (223)
Q Consensus 113 ~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~-~~--~~~~~~Sa~~~~~i~~~~~~ 170 (223)
. ..=++++||+|+..+.+ .+..++.... ++ ++++.+. ........+|..
T Consensus 173 ~------~AD~IvlnK~Dl~~~~~--l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~~ 224 (341)
T TIGR02475 173 A------CADLVILNKADLLDAAG--LARVRAEIAAELPRAVKIVEAS-HGEVDARVLLGL 224 (341)
T ss_pred H------hCCEEEEeccccCCHHH--HHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhCC
Confidence 1 22388999999986433 2333333333 33 2455554 333566666553
No 451
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.14 E-value=0.0021 Score=45.12 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 027438 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~ 37 (223)
--|++.|+.|+|||||++.+...
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35889999999999999998865
No 452
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.11 E-value=0.00028 Score=51.89 Aligned_cols=24 Identities=42% Similarity=0.646 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~ 38 (223)
.-++|.||+|+|||||+++|....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999764
No 453
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.00012 Score=56.31 Aligned_cols=147 Identities=18% Similarity=0.242 Sum_probs=81.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECC-EEEEEEEEeCCCcchhhcchHhhhcC---
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING-KEVKAQIWDTAGQERFRAVTSAYYRG--- 86 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~--- 86 (223)
...+..|++.|+.+ +|++|++...+.-. ...++...++......-.+ ..-...+|+.+|......+..--+..
T Consensus 42 ~~~E~~I~~~Gn~~--~tt~I~~~FdR~e~-~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l 118 (363)
T KOG3929|consen 42 EKFEFFIGSKGNGG--KTTIILRCFDRDEP-PKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTL 118 (363)
T ss_pred ccceeEEEEecCCc--eeEeehhhcCcccC-CCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccch
Confidence 45568889998864 59999988876443 2344444554443332222 22234699999976655544433322
Q ss_pred -CcEEEEEEECCCHhhH-HHHHHHHHHHh--------------------------h-----------cCCCCCcEEEEEe
Q 027438 87 -AVGALLVYDISRRQTF-DSIGRWLNELH--------------------------T-----------HSDMNVVTILVGN 127 (223)
Q Consensus 87 -~d~vi~v~d~~~~~s~-~~~~~~~~~i~--------------------------~-----------~~~~~~piilv~n 127 (223)
.=.+|+++|++++..+ ..+...+..++ . ..+..+||++|+.
T Consensus 119 ~~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgs 198 (363)
T KOG3929|consen 119 RTFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGS 198 (363)
T ss_pred hhhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEecc
Confidence 2247899999997542 22222211111 0 0122589999999
Q ss_pred CCCCCCCcc-----cCHHHHHHHHHHcCCeEEEeccCC
Q 027438 128 KSDLKDARE-----VTTAEGKALAEAQGLFFMETSALD 160 (223)
Q Consensus 128 K~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (223)
|.|.-...+ ....-.+.++..+|..+...|++-
T Consensus 199 KYDvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSskM 236 (363)
T KOG3929|consen 199 KYDVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSKM 236 (363)
T ss_pred chhhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Confidence 999754211 122223444556666655556554
No 454
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.09 E-value=0.00047 Score=48.00 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 027438 17 VVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 17 v~v~G~~~~GKSsli~~l~~~ 37 (223)
|+|.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999988874
No 455
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.09 E-value=0.0067 Score=44.83 Aligned_cols=86 Identities=22% Similarity=0.204 Sum_probs=59.8
Q ss_pred EEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHH
Q 027438 61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTA 140 (223)
Q Consensus 61 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~ 140 (223)
..+.+.++|+|+.... .....+..+|.+++++..+. .+...+..+++.+... +.|+.+|+|++|.... ..+
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE 161 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence 4567889999975432 33456688999999999874 3555666666665543 4678899999996532 345
Q ss_pred HHHHHHHHcCCeEEE
Q 027438 141 EGKALAEAQGLFFME 155 (223)
Q Consensus 141 ~~~~~~~~~~~~~~~ 155 (223)
++.++.+..+++++.
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 667777888887653
No 456
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.08 E-value=0.00034 Score=53.22 Aligned_cols=68 Identities=21% Similarity=0.150 Sum_probs=36.5
Q ss_pred EEEEEeCCCcchhhcc------hHhhhcCCcEEEEEEECC------CHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 027438 64 KAQIWDTAGQERFRAV------TSAYYRGAVGALLVYDIS------RRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131 (223)
Q Consensus 64 ~~~l~D~~G~~~~~~~------~~~~~~~~d~vi~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~ 131 (223)
...++|+||+-+.-.. ....++..|.=+.++.+. +|..|-+ ..+..+..-..-..|-|=|..|+|+
T Consensus 98 ~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS--~lL~sl~tMl~melphVNvlSK~Dl 175 (290)
T KOG1533|consen 98 HYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFIS--SLLVSLATMLHMELPHVNVLSKADL 175 (290)
T ss_pred cEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHH--HHHHHHHHHHhhcccchhhhhHhHH
Confidence 3459999996553211 122334466555555554 4544432 2222222222236788889999997
Q ss_pred CC
Q 027438 132 KD 133 (223)
Q Consensus 132 ~~ 133 (223)
..
T Consensus 176 ~~ 177 (290)
T KOG1533|consen 176 LK 177 (290)
T ss_pred HH
Confidence 53
No 457
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.0017 Score=53.07 Aligned_cols=52 Identities=15% Similarity=0.113 Sum_probs=32.2
Q ss_pred CEEEEEEEEeCCCcchhh-cchHh-----hhcCCcEEEEEEECCCHhh-HHHHHHHHHH
Q 027438 60 GKEVKAQIWDTAGQERFR-AVTSA-----YYRGAVGALLVYDISRRQT-FDSIGRWLNE 111 (223)
Q Consensus 60 ~~~~~~~l~D~~G~~~~~-~~~~~-----~~~~~d~vi~v~d~~~~~s-~~~~~~~~~~ 111 (223)
.+.+.+.|.||+|..... .+.+. -.-.+|-+|+|.|.+-... ++....+-..
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET 239 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence 356789999999944322 12211 1236899999999987654 4444444443
No 458
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.07 E-value=0.00063 Score=51.72 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=22.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcC
Q 027438 11 EDYLFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 11 ~~~~~~v~v~G~~~~GKSsli~~l~~~ 37 (223)
++...-|+|+|++|||||||++.|.+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 344567999999999999999999864
No 459
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.06 E-value=0.00056 Score=47.73 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC
Q 027438 15 FKVVLIGDSAVGKSNLLARFARDEF 39 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~~~ 39 (223)
-.++|+|++|+|||++++.+...-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4689999999999999999987543
No 460
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.06 E-value=0.0049 Score=41.56 Aligned_cols=100 Identities=19% Similarity=0.093 Sum_probs=55.0
Q ss_pred EcCCCCCHHHHHHHHHcCCCCCCCCCcceeeeEEEEEEECCEEEEEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCH
Q 027438 20 IGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRR 99 (223)
Q Consensus 20 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~ 99 (223)
=+..|+||||+...|...-.........-.+.+.. .. ..+.++|+|+.... .....+..+|.++++.+.+.
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~---~~---~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~- 76 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ---FG---DDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL- 76 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC---CC---CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh-
Confidence 34578999997665543211110111111111110 01 15679999985433 33456788999999887754
Q ss_pred hhHHHHHHHHHHHhhcCCC-CCcEEEEEeC
Q 027438 100 QTFDSIGRWLNELHTHSDM-NVVTILVGNK 128 (223)
Q Consensus 100 ~s~~~~~~~~~~i~~~~~~-~~piilv~nK 128 (223)
.++..+..+++.+...... ...+.+|+|+
T Consensus 77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 4555666666665554332 3456677764
No 461
>PRK06217 hypothetical protein; Validated
Probab=97.06 E-value=0.00052 Score=51.14 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 027438 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~ 37 (223)
.+|+|+|.+|||||||.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988864
No 462
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.05 E-value=0.0005 Score=53.65 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 027438 17 VVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 17 v~v~G~~~~GKSsli~~l~~~ 37 (223)
++|+||.|||||||++++.+-
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 589999999999999999873
No 463
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.04 E-value=0.006 Score=50.98 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcC
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~ 37 (223)
.-+|+|+||.|+|||||+.-|++.
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcC
Confidence 458999999999999999988774
No 464
>PRK04195 replication factor C large subunit; Provisional
Probab=97.04 E-value=0.013 Score=50.47 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcC
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~ 37 (223)
.-.++|.|++|+||||+++.+...
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999764
No 465
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.02 E-value=0.00059 Score=48.34 Aligned_cols=21 Identities=52% Similarity=0.784 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 027438 17 VVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 17 v~v~G~~~~GKSsli~~l~~~ 37 (223)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 466
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.02 E-value=0.00062 Score=50.85 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 027438 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~ 37 (223)
.|+|+|++|||||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999764
No 467
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.01 E-value=0.00056 Score=47.43 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 027438 17 VVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 17 v~v~G~~~~GKSsli~~l~~~ 37 (223)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988764
No 468
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.01 E-value=0.00059 Score=50.99 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 027438 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~ 37 (223)
.=|+|+|++|||||||+++|...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999999875
No 469
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.00059 Score=52.11 Aligned_cols=21 Identities=43% Similarity=0.604 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 027438 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~ 36 (223)
-|+|+|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999987
No 470
>PRK03839 putative kinase; Provisional
Probab=96.99 E-value=0.00062 Score=50.50 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 027438 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~ 37 (223)
+|+|+|.|||||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988653
No 471
>PRK10646 ADP-binding protein; Provisional
Probab=96.98 E-value=0.0059 Score=43.92 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 027438 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~ 37 (223)
-|++-|+-|+|||||++.+...
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998754
No 472
>PRK14530 adenylate kinase; Provisional
Probab=96.98 E-value=0.00068 Score=51.85 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 027438 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~ 36 (223)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
No 473
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.98 E-value=0.00081 Score=51.13 Aligned_cols=26 Identities=38% Similarity=0.501 Sum_probs=21.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcC
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~ 37 (223)
....-|+|+|++|||||||++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34566889999999999999999754
No 474
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.97 E-value=0.00065 Score=50.32 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 027438 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~ 37 (223)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988764
No 475
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.97 E-value=0.00073 Score=50.50 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 027438 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~ 37 (223)
-.++|+|++|||||||++.+.+.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999874
No 476
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.96 E-value=0.00077 Score=47.94 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 027438 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~ 37 (223)
.|+|+|+.++|||||++.|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 477
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.95 E-value=0.0081 Score=45.34 Aligned_cols=21 Identities=33% Similarity=0.446 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 027438 17 VVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 17 v~v~G~~~~GKSsli~~l~~~ 37 (223)
|+|.|++||||||+++.+.+.
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988764
No 478
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.95 E-value=0.00075 Score=45.44 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 027438 16 KVVLIGDSAVGKSNLLARFA 35 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~ 35 (223)
-++|+|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 47999999999999999875
No 479
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.00076 Score=56.39 Aligned_cols=93 Identities=16% Similarity=0.154 Sum_probs=56.1
Q ss_pred EEEEEEEEeCCCcchhhcch-H---hh--hcCCcEEEEEEECC-CHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 027438 61 KEVKAQIWDTAGQERFRAVT-S---AY--YRGAVGALLVYDIS-RRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133 (223)
Q Consensus 61 ~~~~~~l~D~~G~~~~~~~~-~---~~--~~~~d~vi~v~d~~-~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~ 133 (223)
..+.+.|+||+|.......+ . .+ ....|.+|+|--+- ..++.+.+..+-..+..+......--++++|+|-..
T Consensus 465 ~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk~dtv~ 544 (587)
T KOG0781|consen 465 QGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFDTVD 544 (587)
T ss_pred cCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEeccchh
Confidence 45678899999955433221 1 12 25788888876543 356788888877777666544445567889999764
Q ss_pred CcccCHHHHHHHHHHcCCeEEEe
Q 027438 134 AREVTTAEGKALAEAQGLFFMET 156 (223)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~ 156 (223)
.. .-.+..+...-+.|++++
T Consensus 545 d~---vg~~~~m~y~~~~pi~fv 564 (587)
T KOG0781|consen 545 DK---VGAAVSMVYITGKPILFV 564 (587)
T ss_pred hH---HHHHhhheeecCCceEEE
Confidence 21 111222333446775443
No 480
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.93 E-value=0.00081 Score=47.58 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 027438 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~ 37 (223)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988753
No 481
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.91 E-value=0.00087 Score=49.32 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 027438 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~ 36 (223)
=.|+|+|++|+|||||+|-+.+
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHh
Confidence 3689999999999999997766
No 482
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.90 E-value=0.00082 Score=49.76 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 027438 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~ 37 (223)
-|+|+|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4789999999999999999874
No 483
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.90 E-value=0.0008 Score=50.09 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 027438 15 FKVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~ 36 (223)
.-|+|+|++||||||+++.|..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998873
No 484
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.90 E-value=0.0021 Score=44.50 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 027438 15 FKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~~~ 37 (223)
--|++-|+-|||||||++.+...
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999988753
No 485
>PRK13949 shikimate kinase; Provisional
Probab=96.90 E-value=0.00091 Score=49.19 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 027438 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~ 36 (223)
+|+|+|++||||||+.+.|..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998765
No 486
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.89 E-value=0.0009 Score=49.53 Aligned_cols=21 Identities=38% Similarity=0.373 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 027438 15 FKVVLIGDSAVGKSNLLARFA 35 (223)
Q Consensus 15 ~~v~v~G~~~~GKSsli~~l~ 35 (223)
-.++|+|+.|+|||||++.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999875
No 487
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.89 E-value=0.00089 Score=51.25 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 027438 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~ 37 (223)
.++|+|+.|+|||||++.+.+.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 488
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.89 E-value=0.00082 Score=50.66 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 027438 17 VVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 17 v~v~G~~~~GKSsli~~l~~~ 37 (223)
|.|.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 489
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.89 E-value=0.00084 Score=52.21 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 027438 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~ 37 (223)
-+.|+||.|+|||||+..+++-
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3689999999999999999983
No 490
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.89 E-value=0.005 Score=43.79 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcC
Q 027438 14 LFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 14 ~~~v~v~G~~~~GKSsli~~l~~~ 37 (223)
.--|++-|+-|||||||.+.+...
T Consensus 25 g~Vv~L~GdLGAGKTtf~rgi~~~ 48 (149)
T COG0802 25 GDVVLLSGDLGAGKTTLVRGIAKG 48 (149)
T ss_pred CCEEEEEcCCcCChHHHHHHHHHH
Confidence 345789999999999999988754
No 491
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.89 E-value=0.00092 Score=51.72 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=22.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcC
Q 027438 12 DYLFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 12 ~~~~~v~v~G~~~~GKSsli~~l~~~ 37 (223)
+..++++|+|++|||||+|+-.|+..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 44589999999999999999888764
No 492
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.88 E-value=0.00086 Score=51.05 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 027438 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~ 37 (223)
.++|+|+.|+|||||++.+.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 493
>PRK14532 adenylate kinase; Provisional
Probab=96.87 E-value=0.00096 Score=49.83 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 027438 16 KVVLIGDSAVGKSNLLARFAR 36 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~ 36 (223)
+|+|+|+|||||||+..+|..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 494
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.86 E-value=0.00091 Score=50.08 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 027438 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~ 37 (223)
.++|+|+.|+|||||++.+.+.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988875
No 495
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.86 E-value=0.033 Score=40.89 Aligned_cols=84 Identities=14% Similarity=-0.010 Sum_probs=50.6
Q ss_pred EEEEEeCCCcchhhcchHhhhcCCcEEEEEEECCCHhhHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHH
Q 027438 64 KAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGK 143 (223)
Q Consensus 64 ~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D~~~~~~~~~~~~~ 143 (223)
.+.++|+|+.... .....+..+|.+|++++.+.. ++..+..+++.+.... .....+|+|+.+.... ...+...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~--~~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADRVKGLLEALG--IKVVGVIVNRVRPDMV--EGGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHcC--CceEEEEEeCCccccc--chhhHHH
Confidence 5779999975433 234556889999999888653 4444555555554421 2456788999886532 1222234
Q ss_pred HHHHHcCCeEE
Q 027438 144 ALAEAQGLFFM 154 (223)
Q Consensus 144 ~~~~~~~~~~~ 154 (223)
.+.+..+.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 45555676654
No 496
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.85 E-value=0.001 Score=50.45 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 027438 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~ 37 (223)
.++|+|+.|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999875
No 497
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.85 E-value=0.0012 Score=53.69 Aligned_cols=22 Identities=55% Similarity=0.643 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCC
Q 027438 17 VVLIGDSAVGKSNLLARFARDE 38 (223)
Q Consensus 17 v~v~G~~~~GKSsli~~l~~~~ 38 (223)
++++||+|||||||++.+.|-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5799999999999999988753
No 498
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.85 E-value=0.001 Score=50.86 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 027438 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~ 37 (223)
.++|+|+.|+|||||++.+.+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 499
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.84 E-value=0.0012 Score=50.31 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=22.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcC
Q 027438 13 YLFKVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 13 ~~~~v~v~G~~~~GKSsli~~l~~~ 37 (223)
..+.|+|.|++|||||||++.|...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999988864
No 500
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.83 E-value=0.0011 Score=51.45 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 027438 16 KVVLIGDSAVGKSNLLARFARD 37 (223)
Q Consensus 16 ~v~v~G~~~~GKSsli~~l~~~ 37 (223)
.++|+|+.|+|||||++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
Done!