BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027439
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 141 YYQKMIQADPRNPLLLSNYAR-FLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIW 199
YYQK ++ DP N N + K +GD +A EY +A+ + PN+ G+ +
Sbjct: 31 YYQKALELDPNNAEAWYNLGNAYYK--QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88
Query: 200 QSHKDASRAESYFDQAVKAAPDD 222
+ D A Y+ +A++ P++
Sbjct: 89 K-QGDYDEAIEYYQKALELDPNN 110
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 141 YYQKMIQADPRNPLLLSNY-ARFLKEARGDLLKAEEYCARAILMSPNDGNVL 191
YYQ I+ DP P+ SN A ++ + GDL K E+ +A+ + P+ L
Sbjct: 47 YYQYAIELDPNEPVFYSNISACYI--STGDLEKVIEFTTKALEIKPDHSKAL 96
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 141 YYQKMIQADPRNPLLLSNY-ARFLKEARGDLLKAEEYCARAILMSPNDGNVL 191
YYQ I+ DP P+ SN A ++ + GDL K E+ +A+ + P+ L
Sbjct: 43 YYQYAIELDPNEPVFYSNISACYI--STGDLEKVIEFTTKALEIKPDHSKAL 92
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 141 YYQKMIQADPRNPLLLSNYAR-FLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIW 199
YYQK ++ DP N N + K+ GD KA EY +A+ + PN+ G+ +
Sbjct: 31 YYQKALELDPNNASAWYNLGNAYYKQ--GDYQKAIEYYQKALELDPNNAKAWYRRGNAYY 88
Query: 200 QSHKDASRAESYFDQAVKAAPDD 222
+ D +A + +A++ P++
Sbjct: 89 K-QGDYQKAIEDYQKALELDPNN 110
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222
+GD KA EY +A+ + PN+ + G+ ++ D +A Y+ +A++ P++
Sbjct: 22 QGDYQKAIEYYQKALELDPNNASAWYNLGNAYYK-QGDYQKAIEYYQKALELDPNN 76
>pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf
pdb|2HO1|B Chain B, Functional Characterization Of Pseudomonas Aeruginosa Pilf
Length = 252
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 142 YQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS-----PNDGNVLSMYGD 196
Y+K + +D RN +L+NY FL E + + EE R + S P V G
Sbjct: 94 YRKALASDSRNARVLNNYGGFLYEQK----RYEEAYQRLLEASQDTLYPERSRVFENLG- 148
Query: 197 LIWQSHKDASRAESYFDQAVK 217
L+ K ++A+ YF+++++
Sbjct: 149 LVSLQXKKPAQAKEYFEKSLR 169
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 142 YQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS-----PNDGNVLSMYGD 196
Y+K + +D RN +L+NY FL E + + EE R + S P V G
Sbjct: 107 YRKALASDSRNARVLNNYGGFLYEQK----RYEEAYQRLLEASQDTLYPERSRVFENLG- 161
Query: 197 LIWQSHKDASRAESYFDQAVK 217
L+ K ++A+ YF+++++
Sbjct: 162 LVSLQMKKPAQAKEYFEKSLR 182
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 29.3 bits (64), Expect = 1.9, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLS 192
H N+ ++YYQ +Q+ N + L +A+ + E + L+ +E + P N +
Sbjct: 757 HNNSGIEIYYQTDMQSTSEN-MFLELFAQIISEPAFNTLRTKEQLGYIVFSGPRRANGIQ 815
Query: 193 MYGDLIWQSHKDA----SRAESYFDQAVKAAPD 221
I QS K SR E++ K+ D
Sbjct: 816 GL-RFIIQSEKPPHYLESRVEAFLITMEKSIED 847
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 29.3 bits (64), Expect = 1.9, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLS 192
H N+ ++YYQ +Q+ N + L +A+ + E + L+ +E + P N +
Sbjct: 757 HNNSGIEIYYQTDMQSTSEN-MFLELFAQIISEPAFNTLRTKEQLGYIVFSGPRRANGIQ 815
Query: 193 MYGDLIWQSHKDA----SRAESYFDQAVKAAPD 221
I QS K SR E++ K+ D
Sbjct: 816 GL-RFIIQSEKPPHYLESRVEAFLITMEKSIED 847
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 29.3 bits (64), Expect = 1.9, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLS 192
H N+ ++YYQ +Q+ N + L +A+ + E + L+ +E + P N +
Sbjct: 757 HNNSGIEIYYQTDMQSTSEN-MFLELFAQIISEPAFNTLRTKEQLGYIVFSGPRRANGIQ 815
Query: 193 MYGDLIWQSHKDA----SRAESYFDQAVKAAPD 221
I QS K SR E++ K+ D
Sbjct: 816 GL-RFIIQSEKPPHYLESRVEAFLITMEKSIED 847
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 29.3 bits (64), Expect = 2.0, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLS 192
H N+ ++YYQ +Q+ N + L +A+ + E + L+ +E + P N +
Sbjct: 744 HNNSGIEIYYQTDMQSTSEN-MFLELFAQIISEPAFNTLRTKEQLGYIVFSGPRRANGIQ 802
Query: 193 MYGDLIWQSHKDA----SRAESYFDQAVKAAPD 221
I QS K SR E++ K+ D
Sbjct: 803 GL-RFIIQSEKPPHYLESRVEAFLITMEKSIED 834
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 29.3 bits (64), Expect = 2.0, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLS 192
H N+ ++YYQ +Q+ N + L +A+ + E + L+ +E + P N +
Sbjct: 757 HNNSGIEIYYQTDMQSTSEN-MFLELFAQIISEPAFNTLRTKEQLGYIVFSGPRRANGIQ 815
Query: 193 MYGDLIWQSHKDA----SRAESYFDQAVKAAPD 221
I QS K SR E++ K+ D
Sbjct: 816 GL-RFIIQSEKPPHYLESRVEAFLITMEKSIED 847
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 29.3 bits (64), Expect = 2.0, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLS 192
H N+ ++YYQ +Q+ N + L +A+ + E + L+ +E + P N +
Sbjct: 786 HNNSGIEIYYQTDMQSTSEN-MFLELFAQIISEPAFNTLRTKEQLGYIVFSGPRRANGIQ 844
Query: 193 MYGDLIWQSHKDA----SRAESYFDQAVKAAPD 221
I QS K SR E++ K+ D
Sbjct: 845 GL-RFIIQSEKPPHYLESRVEAFLITMEKSIED 876
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With
Two Bound Peptides
Length = 1019
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLS 192
H N ++YYQ +Q+ N + L + + + E + L+ +E + P N +
Sbjct: 786 HNNCGIEIYYQTDMQSTSEN-MFLELFCQIISEPCFNTLRTKEQLGYIVFSGPRRANGIQ 844
Query: 193 MYGDLIWQS---HKDASRAESYFDQAVKAAPD 221
+I H SR E++ KA D
Sbjct: 845 GLRFIIQSEKPPHYLESRVEAFLITMEKAIED 876
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
Length = 1019
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLS 192
H N ++YYQ +Q+ N + L + + + E + L+ +E + P N +
Sbjct: 786 HNNCGIEIYYQTDMQSTSEN-MFLELFCQIISEPCFNTLRTKEQLGYIVFSGPRRANGIQ 844
Query: 193 MYGDLIWQS---HKDASRAESYFDQAVKAAPD 221
+I H SR E++ KA D
Sbjct: 845 GLRFIIQSEKPPHYLESRVEAFLITMEKAIED 876
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin)
Length = 978
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLS 192
H N ++YYQ +Q+ N + L + + + E + L+ +E + P N +
Sbjct: 745 HNNCGIEIYYQTDMQSTSEN-MFLELFCQIISEPCFNTLRTKEQLGYIVFSGPRRANGIQ 803
Query: 193 MYGDLIWQS---HKDASRAESYFDQAVKAAPD 221
+I H SR E++ KA D
Sbjct: 804 GLRFIIQSEKPPHYLESRVEAFLITMEKAIED 835
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND 187
YYQK ++ DP N N + +GD +A EY +A+ + PN+
Sbjct: 31 YYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNN 76
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 141 YYQKMIQADPRNPLLLSNYAR-FLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIW 199
YYQK ++ DPR+ N + K +GD +A EY +A+ + P G+ +
Sbjct: 23 YYQKALELDPRSAEAWYNLGNAYYK--QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80
Query: 200 QSHKDASRAESYFDQAVKAAP 220
+ D A Y+ +A++ P
Sbjct: 81 K-QGDYDEAIEYYQKALELDP 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,789,232
Number of Sequences: 62578
Number of extensions: 187095
Number of successful extensions: 385
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 24
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)