Query 027439
Match_columns 223
No_of_seqs 169 out of 1703
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 09:57:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027439.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027439hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15359 type III secretion sy 99.5 2.5E-13 5.3E-18 109.2 10.9 94 127-222 32-125 (144)
2 KOG0553 TPR repeat-containing 99.5 9.8E-14 2.1E-18 123.4 9.1 90 131-222 93-182 (304)
3 PRK10370 formate-dependent nit 99.4 1.7E-12 3.7E-17 109.8 11.4 96 126-222 80-177 (198)
4 TIGR02552 LcrH_SycD type III s 99.4 5.7E-12 1.2E-16 97.9 10.7 94 127-222 25-118 (135)
5 PLN03088 SGT1, suppressor of 99.3 8.1E-12 1.8E-16 114.4 11.9 92 129-222 12-103 (356)
6 PRK11189 lipoprotein NlpI; Pro 99.3 1.4E-11 3.1E-16 109.7 12.0 94 127-222 72-165 (296)
7 COG3063 PilF Tfp pilus assembl 99.2 4.1E-11 8.8E-16 103.7 9.9 89 127-217 43-131 (250)
8 PRK15363 pathogenicity island 99.2 8.9E-11 1.9E-15 96.4 11.3 87 131-219 47-133 (157)
9 PRK10370 formate-dependent nit 99.2 2E-10 4.3E-15 97.2 12.6 90 132-222 52-143 (198)
10 PF13414 TPR_11: TPR repeat; P 99.2 8.6E-11 1.9E-15 81.7 8.6 68 151-220 1-69 (69)
11 COG3063 PilF Tfp pilus assembl 99.2 4.1E-11 8.9E-16 103.6 8.2 95 125-222 75-172 (250)
12 cd00189 TPR Tetratricopeptide 99.2 1.1E-10 2.3E-15 80.4 8.8 93 127-221 8-100 (100)
13 PRK12370 invasion protein regu 99.2 3.5E-10 7.5E-15 108.9 12.5 89 132-222 317-405 (553)
14 TIGR02795 tol_pal_ybgF tol-pal 99.2 6E-10 1.3E-14 83.5 11.2 94 127-222 10-109 (119)
15 TIGR00990 3a0801s09 mitochondr 99.1 3.3E-10 7.1E-15 109.9 11.6 95 126-222 338-432 (615)
16 KOG4626 O-linked N-acetylgluco 99.1 3.2E-10 6.9E-15 109.3 10.7 98 122-221 289-386 (966)
17 KOG1126 DNA-binding cell divis 99.1 3.8E-11 8.2E-16 115.6 4.1 96 125-222 427-522 (638)
18 PF12895 Apc3: Anaphase-promot 99.1 3.1E-10 6.8E-15 82.4 7.1 81 132-215 2-84 (84)
19 KOG4626 O-linked N-acetylgluco 99.1 1.8E-10 4E-15 110.9 7.4 96 125-222 394-489 (966)
20 TIGR00990 3a0801s09 mitochondr 99.1 7.5E-10 1.6E-14 107.4 11.8 94 127-222 373-466 (615)
21 PRK09782 bacteriophage N4 rece 99.1 6.9E-10 1.5E-14 113.5 11.7 95 126-222 616-710 (987)
22 PRK15359 type III secretion sy 99.1 1E-09 2.2E-14 88.2 9.3 82 136-222 10-91 (144)
23 PF13432 TPR_16: Tetratricopep 99.0 9.4E-10 2E-14 75.8 7.7 63 158-222 2-64 (65)
24 KOG0548 Molecular co-chaperone 99.0 7.5E-10 1.6E-14 104.8 9.0 95 126-222 365-459 (539)
25 PRK12370 invasion protein regu 99.0 1.7E-09 3.6E-14 104.2 11.5 92 126-219 345-436 (553)
26 PRK02603 photosystem I assembl 99.0 2.1E-09 4.7E-14 88.0 10.5 95 126-222 42-153 (172)
27 TIGR02521 type_IV_pilW type IV 99.0 3E-09 6.5E-14 86.5 11.1 91 126-218 38-128 (234)
28 CHL00033 ycf3 photosystem I as 99.0 3.9E-09 8.3E-14 86.0 11.0 95 126-222 42-153 (168)
29 TIGR02552 LcrH_SycD type III s 99.0 3.5E-09 7.7E-14 82.1 9.6 82 140-223 4-85 (135)
30 KOG0543 FKBP-type peptidyl-pro 99.0 3E-09 6.5E-14 98.2 10.2 96 125-222 214-324 (397)
31 PF13429 TPR_15: Tetratricopep 99.0 5.5E-10 1.2E-14 97.7 5.0 97 125-223 152-248 (280)
32 TIGR02521 type_IV_pilW type IV 99.0 7.2E-09 1.6E-13 84.2 11.3 95 126-222 72-168 (234)
33 COG4235 Cytochrome c biogenesi 99.0 5E-09 1.1E-13 93.5 10.7 97 125-222 162-260 (287)
34 PF13432 TPR_16: Tetratricopep 98.9 1.3E-09 2.8E-14 75.1 4.7 61 127-188 5-65 (65)
35 KOG1125 TPR repeat-containing 98.9 1.3E-09 2.8E-14 103.9 6.3 95 125-221 436-530 (579)
36 PRK15179 Vi polysaccharide bio 98.9 5.8E-09 1.3E-13 103.3 11.0 91 130-222 97-187 (694)
37 PRK15174 Vi polysaccharide exp 98.9 9.6E-09 2.1E-13 101.0 11.4 92 129-222 222-317 (656)
38 PRK15174 Vi polysaccharide exp 98.9 1E-08 2.2E-13 100.9 11.5 95 126-222 253-351 (656)
39 KOG1126 DNA-binding cell divis 98.9 2.2E-09 4.7E-14 103.6 6.6 96 125-222 461-556 (638)
40 PRK09782 bacteriophage N4 rece 98.9 1.6E-08 3.4E-13 103.7 13.0 87 133-222 590-676 (987)
41 PRK11189 lipoprotein NlpI; Pro 98.9 1.4E-08 3.1E-13 90.5 11.3 96 125-223 104-200 (296)
42 PF13414 TPR_11: TPR repeat; P 98.9 2.9E-09 6.3E-14 73.9 4.4 59 126-185 10-69 (69)
43 COG5010 TadD Flp pilus assembl 98.9 1.5E-08 3.2E-13 88.9 9.6 92 128-221 109-200 (257)
44 PF14559 TPR_19: Tetratricopep 98.9 8.8E-09 1.9E-13 71.2 6.6 65 131-196 3-67 (68)
45 TIGR03302 OM_YfiO outer membra 98.8 1.6E-08 3.4E-13 85.8 9.5 94 127-222 41-148 (235)
46 TIGR02917 PEP_TPR_lipo putativ 98.8 2.3E-08 5E-13 96.5 11.3 94 126-222 777-870 (899)
47 PRK11447 cellulose synthase su 98.8 3.2E-08 6.9E-13 102.8 12.0 53 168-221 475-527 (1157)
48 PRK10803 tol-pal system protei 98.8 6.5E-08 1.4E-12 85.6 12.3 91 130-222 154-250 (263)
49 PRK10049 pgaA outer membrane p 98.8 3.8E-08 8.3E-13 98.3 11.8 94 126-222 56-149 (765)
50 KOG4648 Uncharacterized conser 98.8 9.3E-09 2E-13 93.9 6.5 96 125-222 103-198 (536)
51 TIGR02917 PEP_TPR_lipo putativ 98.8 4.3E-08 9.2E-13 94.7 11.4 95 126-222 132-226 (899)
52 PRK10049 pgaA outer membrane p 98.8 4.1E-08 9E-13 98.0 11.6 94 127-222 367-460 (765)
53 PF13371 TPR_9: Tetratricopept 98.8 3.5E-08 7.5E-13 69.1 7.5 68 127-195 3-70 (73)
54 PRK11447 cellulose synthase su 98.8 4.5E-08 9.8E-13 101.7 11.2 95 125-221 609-703 (1157)
55 PRK11788 tetratricopeptide rep 98.7 8.4E-08 1.8E-12 86.5 11.2 94 127-222 188-282 (389)
56 PRK15179 Vi polysaccharide bio 98.7 6.3E-08 1.4E-12 96.1 10.9 90 128-219 129-218 (694)
57 KOG1155 Anaphase-promoting com 98.7 3.9E-08 8.5E-13 92.3 8.9 93 128-222 339-431 (559)
58 PLN02789 farnesyltranstransfer 98.7 1.1E-07 2.3E-12 86.4 10.4 87 134-222 87-175 (320)
59 TIGR03302 OM_YfiO outer membra 98.7 1.1E-07 2.5E-12 80.5 9.8 96 126-222 77-199 (235)
60 PRK11788 tetratricopeptide rep 98.7 1.2E-07 2.6E-12 85.6 10.2 93 127-221 149-246 (389)
61 KOG0547 Translocase of outer m 98.7 3.7E-08 8E-13 93.0 7.0 95 125-221 400-494 (606)
62 PLN02789 farnesyltranstransfer 98.7 1.4E-07 3.1E-12 85.6 10.6 91 131-223 49-142 (320)
63 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 9.1E-08 2E-12 90.0 9.4 70 147-218 69-141 (453)
64 KOG4234 TPR repeat-containing 98.7 1.5E-07 3.2E-12 80.7 9.6 94 127-222 103-201 (271)
65 PF13371 TPR_9: Tetratricopept 98.7 1.2E-07 2.6E-12 66.3 7.6 57 165-222 6-62 (73)
66 PRK15331 chaperone protein Sic 98.7 1.2E-07 2.7E-12 78.4 8.8 85 131-217 49-133 (165)
67 KOG2076 RNA polymerase III tra 98.7 1.5E-07 3.2E-12 93.7 10.7 91 131-223 151-241 (895)
68 PF06552 TOM20_plant: Plant sp 98.6 2E-07 4.4E-12 78.2 9.4 87 135-222 7-113 (186)
69 KOG0548 Molecular co-chaperone 98.6 1.2E-07 2.6E-12 90.1 8.9 92 129-222 12-103 (539)
70 KOG0547 Translocase of outer m 98.6 1.1E-07 2.3E-12 90.0 8.1 84 127-212 123-206 (606)
71 KOG1155 Anaphase-promoting com 98.6 2E-07 4.2E-12 87.7 9.6 93 125-219 370-462 (559)
72 cd05804 StaR_like StaR_like; a 98.6 2.3E-07 5E-12 82.8 9.4 92 127-220 122-217 (355)
73 PRK11906 transcriptional regul 98.6 4E-07 8.6E-12 85.8 11.2 87 133-221 318-404 (458)
74 PF14559 TPR_19: Tetratricopep 98.6 9.4E-08 2E-12 65.9 4.8 56 166-222 3-58 (68)
75 KOG1173 Anaphase-promoting com 98.6 3.2E-07 6.8E-12 87.8 9.8 96 125-222 420-522 (611)
76 COG4235 Cytochrome c biogenesi 98.5 1.1E-06 2.3E-11 78.7 11.3 89 133-222 136-226 (287)
77 PRK15363 pathogenicity island 98.5 7.1E-07 1.5E-11 73.4 9.3 76 145-222 26-102 (157)
78 PF09976 TPR_21: Tetratricopep 98.5 5.9E-07 1.3E-11 71.6 8.5 86 128-216 57-145 (145)
79 PF13429 TPR_15: Tetratricopep 98.5 5.2E-07 1.1E-11 78.9 8.6 95 125-221 116-212 (280)
80 KOG3060 Uncharacterized conser 98.5 1.3E-06 2.8E-11 77.0 10.1 86 136-222 137-224 (289)
81 COG4783 Putative Zn-dependent 98.5 9.7E-07 2.1E-11 83.3 9.9 96 125-222 312-407 (484)
82 PF12688 TPR_5: Tetratrico pep 98.5 3.2E-06 7E-11 66.6 11.3 89 128-218 10-104 (120)
83 COG5010 TadD Flp pilus assembl 98.4 1.8E-06 3.9E-11 75.9 9.6 89 132-222 79-167 (257)
84 KOG4642 Chaperone-dependent E3 98.4 1.4E-06 3E-11 76.3 8.5 90 127-218 18-107 (284)
85 KOG1128 Uncharacterized conser 98.4 1.5E-06 3.3E-11 85.2 9.5 97 125-223 491-587 (777)
86 PRK11906 transcriptional regul 98.4 2.3E-06 5E-11 80.7 10.5 89 133-222 272-371 (458)
87 KOG4162 Predicted calmodulin-b 98.4 1.5E-06 3.2E-11 85.6 9.4 95 126-222 691-787 (799)
88 cd00189 TPR Tetratricopeptide 98.4 3.2E-06 7E-11 57.6 8.2 66 155-222 2-67 (100)
89 TIGR00540 hemY_coli hemY prote 98.4 4.3E-06 9.3E-11 77.6 11.5 83 133-218 313-399 (409)
90 PLN03088 SGT1, suppressor of 98.4 1.5E-06 3.3E-11 79.7 8.4 74 126-200 43-116 (356)
91 PF13424 TPR_12: Tetratricopep 98.3 7.3E-07 1.6E-11 63.3 4.9 66 151-218 3-75 (78)
92 PRK14574 hmsH outer membrane p 98.3 2.3E-06 4.9E-11 86.5 10.1 94 126-222 109-202 (822)
93 TIGR00540 hemY_coli hemY prote 98.3 2.1E-06 4.5E-11 79.7 9.2 95 127-222 271-370 (409)
94 PRK14574 hmsH outer membrane p 98.3 3.1E-06 6.8E-11 85.5 10.9 88 131-222 46-135 (822)
95 CHL00033 ycf3 photosystem I as 98.3 4.5E-06 9.8E-11 67.8 9.9 90 131-222 11-105 (168)
96 KOG0624 dsRNA-activated protei 98.3 1E-06 2.2E-11 80.7 6.4 91 130-222 49-139 (504)
97 KOG1125 TPR repeat-containing 98.3 2.7E-06 5.8E-11 81.6 9.3 86 134-221 409-496 (579)
98 KOG0553 TPR repeat-containing 98.3 1.2E-06 2.6E-11 78.5 6.4 77 128-206 124-200 (304)
99 KOG0550 Molecular chaperone (D 98.3 1.5E-06 3.2E-11 80.9 7.0 89 130-220 260-352 (486)
100 KOG0543 FKBP-type peptidyl-pro 98.3 3.7E-06 8E-11 77.9 9.6 90 128-218 266-355 (397)
101 cd05804 StaR_like StaR_like; a 98.3 6E-06 1.3E-10 73.7 10.2 86 134-221 95-180 (355)
102 PRK10153 DNA-binding transcrip 98.3 7.6E-06 1.6E-10 78.9 11.5 85 135-222 400-486 (517)
103 PRK10747 putative protoheme IX 98.3 1.1E-05 2.4E-10 74.7 12.1 84 133-219 308-391 (398)
104 TIGR02795 tol_pal_ybgF tol-pal 98.2 1.4E-05 3.1E-10 59.5 9.7 68 153-222 2-72 (119)
105 KOG2076 RNA polymerase III tra 98.2 8.1E-06 1.7E-10 81.6 10.5 94 125-220 179-272 (895)
106 COG4783 Putative Zn-dependent 98.2 8.7E-06 1.9E-10 76.9 10.2 85 126-212 347-431 (484)
107 PRK10153 DNA-binding transcrip 98.2 8.3E-06 1.8E-10 78.6 10.2 88 133-221 356-452 (517)
108 KOG3060 Uncharacterized conser 98.2 7.6E-06 1.7E-10 72.2 8.9 94 127-222 94-187 (289)
109 COG1729 Uncharacterized protei 98.2 2E-05 4.3E-10 69.8 11.2 91 130-222 152-248 (262)
110 PRK02603 photosystem I assembl 98.2 1.9E-05 4.2E-10 64.5 10.4 71 150-222 32-105 (172)
111 KOG1174 Anaphase-promoting com 98.2 1.2E-05 2.5E-10 75.3 9.7 85 135-222 420-504 (564)
112 PRK10747 putative protoheme IX 98.2 2.3E-05 5E-10 72.6 11.8 88 130-219 129-217 (398)
113 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 1.4E-05 2.9E-10 74.8 10.1 88 131-223 181-268 (395)
114 PF13512 TPR_18: Tetratricopep 98.2 3.9E-05 8.3E-10 62.2 11.4 90 131-222 22-132 (142)
115 COG2956 Predicted N-acetylgluc 98.1 1.1E-05 2.4E-10 73.3 8.5 93 127-221 149-246 (389)
116 KOG1173 Anaphase-promoting com 98.1 5.3E-06 1.1E-10 79.6 6.6 90 132-223 393-489 (611)
117 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 6.1E-06 1.3E-10 77.8 7.0 59 125-184 81-142 (453)
118 PRK10866 outer membrane biogen 98.1 5.3E-05 1.1E-09 66.2 11.7 91 130-222 43-157 (243)
119 PRK14720 transcript cleavage f 98.1 1.1E-05 2.3E-10 82.0 8.2 82 133-218 97-178 (906)
120 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 3.8E-05 8.3E-10 71.8 11.0 89 125-215 206-294 (395)
121 KOG1840 Kinesin light chain [C 98.0 1.3E-05 2.9E-10 77.0 7.6 92 125-218 205-312 (508)
122 PF13525 YfiO: Outer membrane 98.0 2.9E-05 6.3E-10 65.6 8.9 93 129-222 15-123 (203)
123 KOG0376 Serine-threonine phosp 98.0 4.3E-06 9.4E-11 78.9 3.6 92 129-222 14-105 (476)
124 PF13431 TPR_17: Tetratricopep 98.0 6.8E-06 1.5E-10 50.5 3.3 32 142-174 2-33 (34)
125 PF13428 TPR_14: Tetratricopep 98.0 1.6E-05 3.5E-10 51.1 5.3 42 154-196 2-43 (44)
126 PF09976 TPR_21: Tetratricopep 98.0 0.00015 3.2E-09 57.7 11.7 82 132-215 24-111 (145)
127 PRK14720 transcript cleavage f 98.0 5.1E-05 1.1E-09 77.2 10.7 82 125-223 122-203 (906)
128 PF13431 TPR_17: Tetratricopep 97.9 9.5E-06 2.1E-10 49.9 3.2 34 176-210 1-34 (34)
129 PRK10803 tol-pal system protei 97.9 8.8E-05 1.9E-09 65.7 10.7 70 152-222 141-213 (263)
130 KOG4555 TPR repeat-containing 97.9 0.00013 2.8E-09 59.1 10.4 85 133-219 57-145 (175)
131 KOG1840 Kinesin light chain [C 97.9 2.3E-05 4.9E-10 75.4 6.9 92 125-218 247-354 (508)
132 KOG1129 TPR repeat-containing 97.9 8.8E-06 1.9E-10 74.3 3.8 92 126-219 297-388 (478)
133 PF04733 Coatomer_E: Coatomer 97.9 2.8E-05 6.1E-10 69.7 7.1 87 134-222 182-269 (290)
134 KOG2002 TPR-containing nuclear 97.9 7.5E-05 1.6E-09 75.4 10.4 72 126-197 206-279 (1018)
135 KOG2002 TPR-containing nuclear 97.9 3.5E-05 7.7E-10 77.7 8.0 95 126-222 314-413 (1018)
136 KOG2003 TPR repeat-containing 97.9 6.3E-05 1.4E-09 71.3 8.7 93 128-222 499-591 (840)
137 KOG0550 Molecular chaperone (D 97.9 2.9E-05 6.2E-10 72.5 6.2 96 125-222 175-282 (486)
138 PF07719 TPR_2: Tetratricopept 97.8 5.6E-05 1.2E-09 45.0 5.3 33 189-222 2-34 (34)
139 KOG2003 TPR repeat-containing 97.8 9E-05 2E-09 70.3 9.0 93 128-222 601-693 (840)
140 KOG1127 TPR repeat-containing 97.8 8.1E-05 1.8E-09 75.5 9.2 91 131-221 14-106 (1238)
141 COG2956 Predicted N-acetylgluc 97.8 0.00012 2.7E-09 66.7 9.0 89 131-221 192-281 (389)
142 COG4785 NlpI Lipoprotein NlpI, 97.8 5.7E-05 1.2E-09 65.8 6.6 93 128-222 74-166 (297)
143 PF13424 TPR_12: Tetratricopep 97.8 1.7E-05 3.8E-10 56.1 2.7 57 126-183 12-75 (78)
144 KOG0545 Aryl-hydrocarbon recep 97.8 0.00015 3.2E-09 64.2 8.8 90 130-221 189-296 (329)
145 PRK15331 chaperone protein Sic 97.8 0.00016 3.4E-09 60.0 8.4 74 148-223 32-105 (165)
146 PF12688 TPR_5: Tetratrico pep 97.8 0.00024 5.2E-09 55.9 9.1 66 154-221 2-70 (120)
147 PF00515 TPR_1: Tetratricopept 97.7 8.3E-05 1.8E-09 44.6 4.6 32 154-186 2-33 (34)
148 KOG1129 TPR repeat-containing 97.7 0.00023 5E-09 65.2 9.0 96 124-222 228-323 (478)
149 PF00515 TPR_1: Tetratricopept 97.7 9.4E-05 2E-09 44.4 4.5 34 188-222 1-34 (34)
150 KOG1128 Uncharacterized conser 97.7 9.1E-05 2E-09 73.0 6.6 94 128-223 433-553 (777)
151 PF07719 TPR_2: Tetratricopept 97.6 0.00015 3.2E-09 43.1 5.1 34 153-187 1-34 (34)
152 PF05843 Suf: Suppressor of fo 97.6 0.0003 6.4E-09 62.5 8.8 86 134-220 16-101 (280)
153 KOG1156 N-terminal acetyltrans 97.6 0.00016 3.5E-09 70.5 7.5 89 132-222 54-142 (700)
154 KOG1156 N-terminal acetyltrans 97.6 0.00027 5.7E-09 69.1 8.8 89 128-218 84-172 (700)
155 KOG4162 Predicted calmodulin-b 97.6 0.00043 9.4E-09 68.7 10.4 87 135-223 460-547 (799)
156 KOG0551 Hsp90 co-chaperone CNS 97.6 0.0002 4.3E-09 65.5 7.3 95 123-219 85-183 (390)
157 KOG1174 Anaphase-promoting com 97.6 0.00026 5.7E-09 66.4 8.2 95 125-221 238-366 (564)
158 KOG0624 dsRNA-activated protei 97.6 0.00063 1.4E-08 62.8 10.4 88 133-222 169-256 (504)
159 PF12895 Apc3: Anaphase-promot 97.6 5E-05 1.1E-09 54.8 2.8 52 167-220 2-55 (84)
160 PF12569 NARP1: NMDA receptor- 97.5 0.00056 1.2E-08 66.1 10.0 87 127-215 202-288 (517)
161 PF03704 BTAD: Bacterial trans 97.5 0.0024 5.1E-08 50.4 12.0 84 133-218 20-125 (146)
162 PF04733 Coatomer_E: Coatomer 97.5 0.00016 3.4E-09 64.9 5.8 94 127-222 139-234 (290)
163 PRK10866 outer membrane biogen 97.5 0.00095 2.1E-08 58.3 10.3 69 152-222 31-102 (243)
164 PF05843 Suf: Suppressor of fo 97.4 0.001 2.3E-08 59.0 9.7 88 132-221 49-139 (280)
165 COG0457 NrfG FOG: TPR repeat [ 97.4 0.0031 6.7E-08 48.1 10.7 92 128-221 139-234 (291)
166 KOG0495 HAT repeat protein [RN 97.4 0.00094 2E-08 65.7 9.3 89 132-222 664-752 (913)
167 PF13428 TPR_14: Tetratricopep 97.4 0.00016 3.5E-09 46.4 2.8 36 126-161 8-43 (44)
168 KOG0495 HAT repeat protein [RN 97.3 0.00076 1.7E-08 66.4 8.3 95 126-222 692-786 (913)
169 PF06552 TOM20_plant: Plant sp 97.3 0.00076 1.7E-08 56.8 7.2 62 134-195 50-121 (186)
170 KOG1308 Hsp70-interacting prot 97.3 8.2E-05 1.8E-09 68.0 1.2 87 132-220 127-213 (377)
171 KOG2396 HAT (Half-A-TPR) repea 97.3 0.0021 4.6E-08 61.5 10.5 86 136-222 88-173 (568)
172 PF14938 SNAP: Soluble NSF att 97.3 0.0015 3.3E-08 57.7 8.8 96 125-221 120-228 (282)
173 KOG1070 rRNA processing protei 97.2 0.0012 2.6E-08 69.2 8.6 93 127-221 1538-1632(1710)
174 KOG1127 TPR repeat-containing 97.2 0.0013 2.7E-08 67.2 8.5 90 127-218 570-659 (1238)
175 COG4700 Uncharacterized protei 97.2 0.0032 7E-08 53.9 9.6 88 132-221 102-192 (251)
176 COG0457 NrfG FOG: TPR repeat [ 97.2 0.0072 1.6E-07 46.1 10.9 90 130-221 178-268 (291)
177 PF13181 TPR_8: Tetratricopept 97.1 0.00098 2.1E-08 39.7 4.4 31 190-221 3-33 (34)
178 PF13525 YfiO: Outer membrane 97.1 0.0048 1E-07 52.0 10.0 69 152-222 4-75 (203)
179 COG3071 HemY Uncharacterized e 97.1 0.0072 1.6E-07 56.3 11.2 83 133-218 308-390 (400)
180 PF14938 SNAP: Soluble NSF att 97.1 0.00091 2E-08 59.2 5.2 83 134-218 89-184 (282)
181 COG3118 Thioredoxin domain-con 97.0 0.011 2.5E-07 53.2 11.7 88 131-220 146-267 (304)
182 COG4105 ComL DNA uptake lipopr 96.9 0.0079 1.7E-07 53.1 10.0 90 132-222 47-149 (254)
183 PF12569 NARP1: NMDA receptor- 96.9 0.0054 1.2E-07 59.4 9.3 66 155-222 196-261 (517)
184 PF13181 TPR_8: Tetratricopept 96.8 0.0026 5.7E-08 37.8 4.3 33 154-187 2-34 (34)
185 KOG3785 Uncharacterized conser 96.8 0.0015 3.2E-08 60.7 4.5 94 126-221 64-183 (557)
186 PF13512 TPR_18: Tetratricopep 96.8 0.015 3.2E-07 47.2 9.8 68 153-222 10-80 (142)
187 KOG4507 Uncharacterized conser 96.7 0.0052 1.1E-07 60.1 7.8 91 130-222 618-709 (886)
188 PLN03081 pentatricopeptide (PP 96.7 0.0066 1.4E-07 60.0 8.9 90 125-218 468-557 (697)
189 KOG2796 Uncharacterized conser 96.7 0.0042 9.1E-08 55.7 6.2 90 131-222 224-319 (366)
190 KOG1130 Predicted G-alpha GTPa 96.7 0.0036 7.7E-08 59.1 6.0 96 121-218 197-304 (639)
191 KOG2053 Mitochondrial inherita 96.6 0.012 2.6E-07 59.6 9.7 88 132-221 22-109 (932)
192 KOG2376 Signal recognition par 96.6 0.016 3.4E-07 56.6 9.9 86 131-221 24-142 (652)
193 KOG3824 Huntingtin interacting 96.6 0.0065 1.4E-07 55.6 6.8 63 133-196 130-192 (472)
194 KOG4648 Uncharacterized conser 96.6 0.0053 1.2E-07 56.9 6.3 62 156-219 100-161 (536)
195 COG3071 HemY Uncharacterized e 96.5 0.016 3.4E-07 54.0 9.1 88 130-222 274-361 (400)
196 PF13174 TPR_6: Tetratricopept 96.5 0.006 1.3E-07 35.6 4.2 31 190-221 2-32 (33)
197 KOG2610 Uncharacterized conser 96.5 0.012 2.6E-07 54.4 8.0 85 129-215 147-235 (491)
198 COG1729 Uncharacterized protei 96.5 0.016 3.6E-07 51.4 8.7 65 156-222 144-211 (262)
199 PLN03077 Protein ECB2; Provisi 96.5 0.016 3.4E-07 58.7 9.7 80 133-216 639-718 (857)
200 KOG1310 WD40 repeat protein [G 96.5 0.0086 1.9E-07 58.0 7.2 89 133-222 388-478 (758)
201 PF08424 NRDE-2: NRDE-2, neces 96.4 0.054 1.2E-06 49.1 11.7 82 140-222 6-98 (321)
202 PLN03218 maturation of RBCL 1; 96.4 0.032 6.9E-07 58.4 11.3 86 129-217 552-642 (1060)
203 PRK10941 hypothetical protein; 96.4 0.018 3.9E-07 51.3 8.3 56 166-222 193-248 (269)
204 KOG3824 Huntingtin interacting 96.3 0.0073 1.6E-07 55.3 5.5 56 166-222 128-183 (472)
205 KOG3081 Vesicle coat complex C 96.3 0.04 8.6E-07 49.3 10.0 86 134-221 188-274 (299)
206 PF14561 TPR_20: Tetratricopep 96.3 0.06 1.3E-06 40.1 9.4 76 138-215 7-84 (90)
207 KOG4234 TPR repeat-containing 96.3 0.01 2.2E-07 51.4 5.9 67 130-197 145-211 (271)
208 KOG3785 Uncharacterized conser 96.2 0.014 3E-07 54.4 7.0 83 131-215 34-117 (557)
209 PF13176 TPR_7: Tetratricopept 96.2 0.0098 2.1E-07 36.4 4.2 25 156-181 2-26 (36)
210 PLN03081 pentatricopeptide (PP 96.2 0.017 3.8E-07 57.0 7.9 86 127-218 267-354 (697)
211 PF10300 DUF3808: Protein of u 96.2 0.04 8.6E-07 52.6 10.1 85 133-219 247-335 (468)
212 KOG1915 Cell cycle control pro 96.2 0.022 4.7E-07 54.7 8.1 92 128-221 82-173 (677)
213 KOG1915 Cell cycle control pro 96.2 0.025 5.4E-07 54.3 8.5 88 131-220 449-538 (677)
214 PF04184 ST7: ST7 protein; In 96.2 0.023 5E-07 54.6 8.3 85 133-221 182-291 (539)
215 smart00028 TPR Tetratricopepti 96.2 0.0095 2.1E-07 32.6 3.6 31 155-186 3-33 (34)
216 PLN03218 maturation of RBCL 1; 96.1 0.053 1.2E-06 56.8 11.6 91 125-219 513-609 (1060)
217 PF13281 DUF4071: Domain of un 96.1 0.041 9E-07 51.3 9.8 93 129-222 151-259 (374)
218 KOG4555 TPR repeat-containing 96.1 0.024 5.2E-07 46.1 7.1 57 162-220 52-108 (175)
219 COG4785 NlpI Lipoprotein NlpI, 96.1 0.01 2.2E-07 52.0 5.2 92 129-223 109-201 (297)
220 PLN03077 Protein ECB2; Provisi 96.1 0.035 7.5E-07 56.2 10.0 86 133-222 603-690 (857)
221 PF14561 TPR_20: Tetratricopep 96.1 0.018 3.9E-07 42.9 6.0 48 173-221 7-54 (90)
222 PF14853 Fis1_TPR_C: Fis1 C-te 96.1 0.031 6.8E-07 37.8 6.6 40 155-195 3-42 (53)
223 COG2976 Uncharacterized protei 96.1 0.044 9.6E-07 46.9 8.7 87 132-221 102-191 (207)
224 PRK04841 transcriptional regul 96.0 0.038 8.2E-07 55.7 9.5 90 127-218 460-560 (903)
225 PF10300 DUF3808: Protein of u 96.0 0.028 6E-07 53.7 8.1 93 125-218 273-376 (468)
226 COG4700 Uncharacterized protei 96.0 0.09 1.9E-06 45.2 10.2 85 134-221 71-156 (251)
227 PRK10941 hypothetical protein; 96.0 0.065 1.4E-06 47.8 9.9 66 130-196 192-257 (269)
228 KOG4340 Uncharacterized conser 95.9 0.041 9E-07 50.3 8.3 83 131-215 22-104 (459)
229 COG4976 Predicted methyltransf 95.9 0.015 3.3E-07 51.1 5.4 57 131-188 7-63 (287)
230 PF09986 DUF2225: Uncharacteri 95.9 0.13 2.8E-06 44.3 11.1 85 132-218 90-194 (214)
231 smart00028 TPR Tetratricopepti 95.9 0.017 3.6E-07 31.6 3.9 33 189-222 2-34 (34)
232 PF13281 DUF4071: Domain of un 95.9 0.039 8.4E-07 51.5 8.2 87 134-223 241-339 (374)
233 PF13174 TPR_6: Tetratricopept 95.7 0.027 5.9E-07 32.7 4.4 32 155-187 2-33 (33)
234 PF13176 TPR_7: Tetratricopept 95.7 0.023 5E-07 34.8 4.1 28 190-218 1-28 (36)
235 COG5191 Uncharacterized conser 95.7 0.014 3E-07 53.5 4.3 81 141-222 95-175 (435)
236 PF03704 BTAD: Bacterial trans 95.6 0.034 7.3E-07 43.7 5.9 52 130-182 73-124 (146)
237 COG4976 Predicted methyltransf 95.6 0.017 3.6E-07 50.9 4.3 56 166-222 7-62 (287)
238 PRK04841 transcriptional regul 95.5 0.07 1.5E-06 53.8 9.3 88 129-218 501-602 (903)
239 PF04184 ST7: ST7 protein; In 95.5 0.15 3.2E-06 49.2 10.8 90 131-221 271-378 (539)
240 KOG2396 HAT (Half-A-TPR) repea 95.5 0.12 2.6E-06 49.9 10.1 67 133-199 119-185 (568)
241 KOG2376 Signal recognition par 95.5 0.1 2.3E-06 51.0 9.7 84 130-218 90-204 (652)
242 PF14853 Fis1_TPR_C: Fis1 C-te 95.4 0.041 9E-07 37.2 5.0 32 190-222 3-34 (53)
243 KOG1941 Acetylcholine receptor 95.4 0.035 7.7E-07 51.8 6.1 94 123-218 126-235 (518)
244 KOG2047 mRNA splicing factor [ 95.4 0.057 1.2E-06 53.4 7.8 90 130-220 488-581 (835)
245 KOG1586 Protein required for f 95.3 0.086 1.9E-06 46.6 7.9 93 125-219 80-184 (288)
246 KOG0530 Protein farnesyltransf 95.3 0.15 3.2E-06 45.8 9.2 90 132-222 56-146 (318)
247 KOG1130 Predicted G-alpha GTPa 95.2 0.083 1.8E-06 50.2 8.0 92 125-218 241-344 (639)
248 KOG1070 rRNA processing protei 95.1 0.11 2.3E-06 55.3 9.0 91 127-219 1572-1664(1710)
249 COG3914 Spy Predicted O-linked 95.1 0.19 4.1E-06 49.2 10.1 90 132-222 80-175 (620)
250 KOG3081 Vesicle coat complex C 95.1 0.14 3E-06 45.9 8.5 88 132-222 150-240 (299)
251 KOG4642 Chaperone-dependent E3 95.0 0.025 5.4E-07 50.0 3.5 59 161-221 18-76 (284)
252 PF10373 EST1_DNA_bind: Est1 D 94.9 0.12 2.6E-06 44.6 7.6 62 138-200 1-62 (278)
253 PF04781 DUF627: Protein of un 94.9 0.13 2.9E-06 40.0 7.0 90 128-218 5-107 (111)
254 KOG2796 Uncharacterized conser 94.6 0.27 5.9E-06 44.4 9.0 93 127-223 260-359 (366)
255 KOG3364 Membrane protein invol 94.5 0.27 5.8E-06 40.0 8.1 70 152-222 31-104 (149)
256 PF09613 HrpB1_HrpK: Bacterial 94.5 0.49 1.1E-05 39.2 9.8 72 133-206 24-95 (160)
257 KOG1585 Protein required for f 94.5 0.3 6.5E-06 43.6 9.0 92 124-218 36-139 (308)
258 PF08424 NRDE-2: NRDE-2, neces 94.4 0.82 1.8E-05 41.4 12.2 84 134-218 46-131 (321)
259 PF13374 TPR_10: Tetratricopep 94.4 0.11 2.4E-06 31.5 4.6 29 154-183 3-31 (42)
260 KOG2610 Uncharacterized conser 94.2 0.25 5.5E-06 45.9 8.3 88 133-222 117-208 (491)
261 COG4105 ComL DNA uptake lipopr 94.2 0.46 1E-05 42.1 9.6 67 154-222 35-104 (254)
262 PF13374 TPR_10: Tetratricopep 94.0 0.17 3.7E-06 30.6 4.8 29 189-218 3-31 (42)
263 KOG1941 Acetylcholine receptor 93.9 0.1 2.2E-06 48.8 5.2 91 126-218 169-275 (518)
264 KOG0376 Serine-threonine phosp 93.9 0.078 1.7E-06 50.6 4.4 69 128-197 47-115 (476)
265 KOG4340 Uncharacterized conser 93.5 0.21 4.6E-06 45.8 6.4 66 151-218 142-207 (459)
266 KOG0529 Protein geranylgeranyl 93.2 0.61 1.3E-05 44.0 9.1 89 134-223 90-183 (421)
267 smart00386 HAT HAT (Half-A-TPR 93.0 0.28 6.1E-06 27.9 4.5 27 134-160 2-28 (33)
268 KOG2053 Mitochondrial inherita 92.9 0.7 1.5E-05 47.3 9.5 74 131-207 55-128 (932)
269 PF12862 Apc5: Anaphase-promot 92.5 1.3 2.9E-05 32.6 8.6 27 191-218 44-70 (94)
270 KOG1586 Protein required for f 92.5 0.45 9.7E-06 42.2 6.7 53 166-218 85-143 (288)
271 smart00386 HAT HAT (Half-A-TPR 92.3 0.4 8.6E-06 27.2 4.5 30 168-197 1-30 (33)
272 COG5191 Uncharacterized conser 92.1 0.16 3.4E-06 46.7 3.5 65 133-197 121-185 (435)
273 KOG1914 mRNA cleavage and poly 92.1 0.92 2E-05 44.4 8.9 72 143-217 10-81 (656)
274 PF04910 Tcf25: Transcriptiona 92.1 1.7 3.7E-05 40.3 10.5 74 146-221 33-135 (360)
275 PF12968 DUF3856: Domain of Un 92.0 3.1 6.7E-05 33.4 10.3 84 133-218 23-129 (144)
276 KOG0551 Hsp90 co-chaperone CNS 91.8 0.41 8.8E-06 44.3 5.9 68 153-222 81-152 (390)
277 PF07720 TPR_3: Tetratricopept 91.6 0.72 1.6E-05 28.6 5.2 30 191-221 4-35 (36)
278 KOG1308 Hsp70-interacting prot 91.6 0.034 7.3E-07 51.3 -1.3 55 167-222 127-181 (377)
279 PF10602 RPN7: 26S proteasome 91.5 0.92 2E-05 37.7 7.4 91 126-217 43-141 (177)
280 COG3898 Uncharacterized membra 91.5 2 4.2E-05 40.9 10.1 83 132-217 133-216 (531)
281 KOG0545 Aryl-hydrocarbon recep 91.4 0.52 1.1E-05 42.2 6.0 65 126-191 237-301 (329)
282 PF11207 DUF2989: Protein of u 90.9 1.9 4E-05 37.1 8.7 71 136-209 123-198 (203)
283 TIGR02561 HrpB1_HrpK type III 90.9 1.9 4.1E-05 35.4 8.4 73 132-206 23-95 (153)
284 COG3629 DnrI DNA-binding trans 90.7 1.9 4E-05 38.9 8.9 81 134-218 136-216 (280)
285 PF04910 Tcf25: Transcriptiona 90.7 1.9 4E-05 40.0 9.3 88 132-220 116-224 (360)
286 KOG3364 Membrane protein invol 90.6 0.8 1.7E-05 37.3 5.9 63 132-195 48-112 (149)
287 COG0790 FOG: TPR repeat, SEL1 90.4 3.8 8.1E-05 35.7 10.6 82 134-219 128-221 (292)
288 KOG1550 Extracellular protein 90.4 1.2 2.6E-05 43.5 8.1 85 132-218 262-357 (552)
289 KOG1550 Extracellular protein 90.4 2.7 5.9E-05 41.0 10.5 80 134-219 308-394 (552)
290 KOG2471 TPR repeat-containing 90.2 0.18 3.8E-06 48.8 2.1 44 155-199 337-380 (696)
291 KOG0529 Protein geranylgeranyl 90.2 2.8 6.1E-05 39.6 10.0 87 136-223 46-145 (421)
292 COG2912 Uncharacterized conser 90.2 0.88 1.9E-05 40.7 6.3 59 163-222 190-248 (269)
293 COG0790 FOG: TPR repeat, SEL1 89.8 3.8 8.3E-05 35.6 10.2 81 134-220 170-268 (292)
294 KOG2471 TPR repeat-containing 89.8 1.3 2.8E-05 43.1 7.4 76 125-218 289-364 (696)
295 KOG4814 Uncharacterized conser 89.8 2.6 5.6E-05 42.2 9.7 85 132-218 367-457 (872)
296 PF02259 FAT: FAT domain; Int 89.7 4 8.7E-05 36.0 10.3 67 154-221 253-341 (352)
297 COG3898 Uncharacterized membra 89.7 3.4 7.3E-05 39.3 9.9 52 169-221 244-295 (531)
298 KOG1258 mRNA processing protei 89.6 3 6.5E-05 41.0 10.0 89 133-222 59-147 (577)
299 KOG2300 Uncharacterized conser 89.6 1.7 3.7E-05 42.1 8.1 87 134-220 24-120 (629)
300 COG2912 Uncharacterized conser 89.5 1.6 3.4E-05 39.1 7.4 63 133-196 195-257 (269)
301 KOG0530 Protein farnesyltransf 89.1 3.3 7.2E-05 37.3 9.1 84 134-219 93-177 (318)
302 PF09613 HrpB1_HrpK: Bacterial 89.0 3.8 8.2E-05 33.9 8.8 55 166-221 22-76 (160)
303 KOG2047 mRNA splicing factor [ 88.8 1.3 2.9E-05 44.2 6.9 89 130-220 436-542 (835)
304 PF07721 TPR_4: Tetratricopept 88.6 0.61 1.3E-05 26.4 2.8 23 190-213 3-25 (26)
305 PF07720 TPR_3: Tetratricopept 88.3 1.8 4E-05 26.7 5.1 33 154-187 2-36 (36)
306 KOG3617 WD40 and TPR repeat-co 87.9 2.4 5.1E-05 43.8 8.1 57 125-182 918-995 (1416)
307 PF08631 SPO22: Meiosis protei 87.9 9.8 0.00021 33.5 11.4 89 131-221 5-119 (278)
308 KOG1258 mRNA processing protei 87.5 5 0.00011 39.5 10.0 89 131-221 309-398 (577)
309 PF10516 SHNi-TPR: SHNi-TPR; 87.4 1.1 2.4E-05 28.2 3.7 29 189-218 2-30 (38)
310 PF02259 FAT: FAT domain; Int 86.9 5.3 0.00011 35.2 9.2 89 131-221 158-290 (352)
311 PF12862 Apc5: Anaphase-promot 86.7 3.9 8.5E-05 30.1 7.0 52 132-184 11-71 (94)
312 PF11846 DUF3366: Domain of un 86.5 3.3 7E-05 34.3 7.2 49 171-221 128-176 (193)
313 KOG2422 Uncharacterized conser 86.5 7.3 0.00016 38.5 10.4 88 132-220 355-450 (665)
314 KOG3617 WD40 and TPR repeat-co 85.6 3.6 7.9E-05 42.5 8.0 84 132-217 813-940 (1416)
315 KOG1914 mRNA cleavage and poly 84.9 7.5 0.00016 38.3 9.5 83 133-217 33-115 (656)
316 PLN03138 Protein TOC75; Provis 83.4 0.89 1.9E-05 46.3 2.8 17 171-187 164-180 (796)
317 PF10602 RPN7: 26S proteasome 83.3 9 0.00019 31.8 8.4 63 154-218 37-102 (177)
318 KOG1585 Protein required for f 82.2 12 0.00026 33.6 9.0 81 133-215 85-176 (308)
319 PF07079 DUF1347: Protein of u 82.2 4.8 0.0001 38.9 6.9 50 163-215 472-521 (549)
320 PF09986 DUF2225: Uncharacteri 82.1 9.6 0.00021 32.7 8.4 61 135-196 141-208 (214)
321 COG4907 Predicted membrane pro 81.6 1 2.3E-05 43.1 2.4 10 19-28 502-511 (595)
322 KOG3973 Uncharacterized conser 81.4 1.3 2.8E-05 41.1 2.8 25 94-118 351-375 (465)
323 PF10345 Cohesin_load: Cohesin 81.2 21 0.00045 35.1 11.4 81 136-218 38-128 (608)
324 PF10579 Rapsyn_N: Rapsyn N-te 81.0 16 0.00035 26.8 7.9 54 162-217 15-71 (80)
325 PF07721 TPR_4: Tetratricopept 80.5 2.4 5.1E-05 23.9 2.8 25 154-179 2-26 (26)
326 COG3947 Response regulator con 79.6 9.7 0.00021 34.9 7.7 59 156-216 282-340 (361)
327 KOG4507 Uncharacterized conser 79.6 5.8 0.00013 39.5 6.7 64 133-197 656-719 (886)
328 KOG0546 HSP90 co-chaperone CPR 79.2 1.1 2.4E-05 41.6 1.7 91 130-222 233-342 (372)
329 PRK13184 pknD serine/threonine 77.7 11 0.00024 39.4 8.4 91 130-222 486-585 (932)
330 TIGR02561 HrpB1_HrpK type III 77.5 16 0.00035 30.0 7.8 53 166-219 22-74 (153)
331 COG2976 Uncharacterized protei 77.1 26 0.00057 30.2 9.3 57 156-215 92-152 (207)
332 PF15015 NYD-SP12_N: Spermatog 77.0 7.6 0.00016 37.3 6.5 81 130-212 187-285 (569)
333 cd02680 MIT_calpain7_2 MIT: do 76.4 5.1 0.00011 29.0 4.1 20 165-184 17-36 (75)
334 COG4455 ImpE Protein of avirul 76.1 7.8 0.00017 34.2 5.9 63 132-195 14-76 (273)
335 COG3629 DnrI DNA-binding trans 76.0 8.7 0.00019 34.6 6.4 54 129-183 163-216 (280)
336 PF00244 14-3-3: 14-3-3 protei 75.9 4.7 0.0001 35.1 4.6 47 136-182 143-197 (236)
337 PF02184 HAT: HAT (Half-A-TPR) 75.6 5.8 0.00012 24.2 3.6 25 135-160 3-27 (32)
338 cd02682 MIT_AAA_Arch MIT: doma 75.4 7 0.00015 28.3 4.6 27 164-190 16-49 (75)
339 PLN03138 Protein TOC75; Provis 75.4 5.1 0.00011 41.0 5.3 15 138-152 166-180 (796)
340 COG3118 Thioredoxin domain-con 75.1 30 0.00064 31.6 9.5 69 145-215 228-298 (304)
341 PF10516 SHNi-TPR: SHNi-TPR; 75.1 5.9 0.00013 24.9 3.7 30 154-184 2-31 (38)
342 PF11846 DUF3366: Domain of un 74.7 14 0.00031 30.4 7.1 51 134-186 126-176 (193)
343 KOG2300 Uncharacterized conser 74.6 30 0.00065 33.9 9.9 82 133-219 381-475 (629)
344 COG4455 ImpE Protein of avirul 74.2 14 0.00031 32.6 7.0 54 167-221 14-67 (273)
345 smart00101 14_3_3 14-3-3 homol 74.1 39 0.00084 29.8 9.9 48 170-217 144-199 (244)
346 COG3914 Spy Predicted O-linked 73.8 14 0.00031 36.5 7.7 85 136-222 48-135 (620)
347 TIGR02996 rpt_mate_G_obs repea 73.4 7.8 0.00017 25.0 3.9 32 176-208 4-35 (42)
348 PF08631 SPO22: Meiosis protei 73.2 14 0.0003 32.5 7.0 52 166-218 5-65 (278)
349 COG2909 MalT ATP-dependent tra 72.4 32 0.00069 35.7 10.0 86 132-218 428-526 (894)
350 cd02681 MIT_calpain7_1 MIT: do 71.6 7.8 0.00017 28.0 4.1 26 157-183 10-35 (76)
351 PF02184 HAT: HAT (Half-A-TPR) 70.8 9.4 0.0002 23.2 3.7 27 169-196 2-28 (32)
352 PF14863 Alkyl_sulf_dimr: Alky 70.7 16 0.00036 29.4 6.3 59 140-200 58-116 (141)
353 PF04781 DUF627: Protein of un 70.7 8.8 0.00019 29.9 4.5 48 136-184 61-108 (111)
354 PHA02537 M terminase endonucle 70.2 55 0.0012 28.6 9.9 20 202-221 191-210 (230)
355 PF11817 Foie-gras_1: Foie gra 70.0 50 0.0011 28.6 9.7 81 134-216 153-245 (247)
356 KOG3807 Predicted membrane pro 69.9 30 0.00065 32.6 8.4 84 133-220 198-306 (556)
357 PF08311 Mad3_BUB1_I: Mad3/BUB 69.7 50 0.0011 25.7 8.8 73 136-216 43-126 (126)
358 KOG2422 Uncharacterized conser 69.2 63 0.0014 32.3 10.8 89 132-221 251-374 (665)
359 KOG4279 Serine/threonine prote 69.0 10 0.00022 38.9 5.6 89 133-223 301-400 (1226)
360 cd02683 MIT_1 MIT: domain cont 68.5 13 0.00028 26.8 4.7 43 136-187 4-46 (77)
361 COG5107 RNA14 Pre-mRNA 3'-end 68.4 26 0.00057 34.1 7.9 49 167-216 445-493 (660)
362 PRK15490 Vi polysaccharide bio 68.4 21 0.00045 35.4 7.5 77 134-214 23-99 (578)
363 COG4941 Predicted RNA polymera 68.4 24 0.00052 33.0 7.5 86 133-221 310-397 (415)
364 KOG0546 HSP90 co-chaperone CPR 67.4 7.4 0.00016 36.3 4.0 67 133-200 289-355 (372)
365 KOG2581 26S proteasome regulat 67.2 23 0.00049 33.9 7.2 72 150-222 205-280 (493)
366 cd02682 MIT_AAA_Arch MIT: doma 66.8 14 0.0003 26.8 4.5 15 133-147 20-34 (75)
367 COG5107 RNA14 Pre-mRNA 3'-end 66.3 55 0.0012 32.0 9.6 87 132-220 445-533 (660)
368 KOG4814 Uncharacterized conser 65.8 22 0.00049 35.8 7.1 65 155-222 357-427 (872)
369 PRK15180 Vi polysaccharide bio 65.4 7.4 0.00016 38.1 3.7 87 133-221 303-423 (831)
370 PF09205 DUF1955: Domain of un 65.1 63 0.0014 26.5 8.4 79 133-217 70-148 (161)
371 COG4649 Uncharacterized protei 65.1 34 0.00074 29.3 7.2 50 167-217 145-195 (221)
372 PF04053 Coatomer_WDAD: Coatom 64.9 11 0.00024 36.0 4.8 30 185-215 344-373 (443)
373 smart00745 MIT Microtubule Int 63.4 15 0.00033 25.7 4.3 20 164-183 18-37 (77)
374 PF08311 Mad3_BUB1_I: Mad3/BUB 63.2 31 0.00067 27.0 6.4 44 137-181 81-126 (126)
375 COG3947 Response regulator con 63.2 10 0.00022 34.8 4.0 55 125-180 285-339 (361)
376 PF00244 14-3-3: 14-3-3 protei 62.8 32 0.0007 29.8 7.0 48 171-218 143-198 (236)
377 PF04190 DUF410: Protein of un 62.5 25 0.00054 30.9 6.4 64 150-214 46-115 (260)
378 PF09797 NatB_MDM20: N-acetylt 62.4 64 0.0014 29.4 9.3 46 169-215 198-243 (365)
379 smart00101 14_3_3 14-3-3 homol 61.2 23 0.0005 31.2 5.9 48 135-182 144-199 (244)
380 cd02677 MIT_SNX15 MIT: domain 61.0 14 0.0003 26.6 3.7 19 165-183 17-35 (75)
381 smart00299 CLH Clathrin heavy 61.0 73 0.0016 24.4 8.3 45 132-178 20-64 (140)
382 PF09670 Cas_Cas02710: CRISPR- 61.0 1.3E+02 0.0027 28.1 11.0 51 132-182 144-197 (379)
383 PF04190 DUF410: Protein of un 60.8 1.2E+02 0.0025 26.7 10.3 67 151-218 88-170 (260)
384 PF07079 DUF1347: Protein of u 60.7 59 0.0013 31.7 8.7 82 130-214 17-104 (549)
385 PF12854 PPR_1: PPR repeat 60.7 25 0.00055 20.8 4.3 26 188-214 7-32 (34)
386 KOG1310 WD40 repeat protein [G 60.2 17 0.00037 35.9 5.2 55 133-188 425-479 (758)
387 PF11207 DUF2989: Protein of u 60.2 90 0.002 26.9 9.1 51 169-221 121-172 (203)
388 cd02678 MIT_VPS4 MIT: domain c 59.2 26 0.00056 24.7 4.9 13 136-148 4-16 (75)
389 TIGR03504 FimV_Cterm FimV C-te 58.8 22 0.00048 22.9 4.0 23 158-181 4-26 (44)
390 cd02679 MIT_spastin MIT: domai 58.6 24 0.00052 25.7 4.6 17 167-183 21-37 (79)
391 PF10345 Cohesin_load: Cohesin 58.6 71 0.0015 31.4 9.4 87 131-219 72-169 (608)
392 COG1747 Uncharacterized N-term 58.3 65 0.0014 32.0 8.7 82 132-218 79-160 (711)
393 PF04212 MIT: MIT (microtubule 58.0 28 0.00061 23.9 4.8 18 165-182 16-33 (69)
394 cd02680 MIT_calpain7_2 MIT: do 57.9 24 0.00053 25.5 4.5 42 134-186 2-43 (75)
395 smart00671 SEL1 Sel1-like repe 57.5 19 0.00041 20.7 3.4 13 204-216 20-32 (36)
396 PF12968 DUF3856: Domain of Un 57.3 41 0.00089 27.1 6.0 50 167-217 22-83 (144)
397 PF10579 Rapsyn_N: Rapsyn N-te 56.0 35 0.00077 25.1 5.1 55 125-181 13-70 (80)
398 PF13041 PPR_2: PPR repeat fam 55.6 34 0.00074 21.6 4.6 24 194-218 9-32 (50)
399 KOG2758 Translation initiation 54.7 59 0.0013 30.4 7.4 80 136-218 112-196 (432)
400 KOG0128 RNA-binding protein SA 54.7 1.6E+02 0.0035 30.6 11.1 83 134-217 94-178 (881)
401 TIGR02996 rpt_mate_G_obs repea 54.0 34 0.00074 22.1 4.2 34 140-174 3-36 (42)
402 PRK13184 pknD serine/threonine 52.1 75 0.0016 33.4 8.6 86 134-221 534-623 (932)
403 PF15015 NYD-SP12_N: Spermatog 51.7 66 0.0014 31.2 7.4 75 125-200 234-311 (569)
404 cd02681 MIT_calpain7_1 MIT: do 51.4 36 0.00078 24.6 4.5 40 136-184 4-43 (76)
405 PF04212 MIT: MIT (microtubule 50.7 35 0.00075 23.4 4.3 43 135-186 2-44 (69)
406 cd02677 MIT_SNX15 MIT: domain 49.6 94 0.002 22.2 7.0 69 135-216 3-71 (75)
407 PF01535 PPR: PPR repeat; Int 48.5 31 0.00067 18.8 3.2 15 202-216 13-27 (31)
408 TIGR03504 FimV_Cterm FimV C-te 48.2 40 0.00086 21.7 3.9 24 193-217 4-27 (44)
409 KOG4014 Uncharacterized conser 47.9 57 0.0012 28.3 5.8 83 134-219 50-142 (248)
410 cd02656 MIT MIT: domain contai 47.8 42 0.00091 23.4 4.4 17 170-186 29-45 (75)
411 cd02684 MIT_2 MIT: domain cont 47.8 52 0.0011 23.4 4.9 14 135-148 3-16 (75)
412 PRK15180 Vi polysaccharide bio 47.4 1.3E+02 0.0028 29.9 8.7 48 167-215 302-349 (831)
413 PF09205 DUF1955: Domain of un 46.9 98 0.0021 25.4 6.8 50 133-183 100-149 (161)
414 KOG0128 RNA-binding protein SA 46.5 1.3E+02 0.0029 31.2 9.0 86 132-218 126-219 (881)
415 KOG0276 Vesicle coat complex C 45.2 64 0.0014 32.5 6.4 45 167-217 650-694 (794)
416 PF04053 Coatomer_WDAD: Coatom 44.5 97 0.0021 29.6 7.6 33 149-182 343-375 (443)
417 KOG3783 Uncharacterized conser 43.5 67 0.0015 31.6 6.3 82 136-219 250-333 (546)
418 PF09797 NatB_MDM20: N-acetylt 42.9 90 0.002 28.4 6.9 46 134-180 198-243 (365)
419 KOG4151 Myosin assembly protei 42.8 30 0.00064 35.3 3.9 95 127-222 61-160 (748)
420 cd02683 MIT_1 MIT: domain cont 42.8 58 0.0012 23.4 4.5 27 156-183 9-35 (77)
421 TIGR00756 PPR pentatricopeptid 42.7 59 0.0013 17.8 4.0 16 202-217 13-28 (35)
422 KOG0921 Dosage compensation co 42.6 21 0.00046 37.5 2.8 13 35-47 1126-1138(1282)
423 KOG1839 Uncharacterized protei 42.1 39 0.00084 36.4 4.7 81 136-218 955-1044(1236)
424 PF05918 API5: Apoptosis inhib 41.3 8.8 0.00019 37.8 0.0 12 8-19 455-466 (556)
425 COG3107 LppC Putative lipoprot 41.2 1.7E+02 0.0036 29.1 8.5 80 135-215 44-125 (604)
426 KOG0890 Protein kinase of the 39.8 1.3E+02 0.0029 34.7 8.4 81 135-219 1645-1732(2382)
427 PF09670 Cas_Cas02710: CRISPR- 39.4 2.4E+02 0.0053 26.2 9.2 59 158-218 136-198 (379)
428 PF10255 Paf67: RNA polymerase 39.2 58 0.0013 30.9 5.1 49 132-182 135-192 (404)
429 KOG1497 COP9 signalosome, subu 38.6 1.6E+02 0.0035 27.5 7.6 88 126-216 110-211 (399)
430 PF10255 Paf67: RNA polymerase 38.4 26 0.00057 33.2 2.7 50 167-217 135-192 (404)
431 PF13226 DUF4034: Domain of un 38.3 2.1E+02 0.0046 25.7 8.3 61 137-197 61-142 (277)
432 KOG3783 Uncharacterized conser 38.2 2.3E+02 0.0051 28.0 9.0 61 158-219 454-521 (546)
433 COG5536 BET4 Protein prenyltra 36.7 1.8E+02 0.004 26.6 7.6 88 136-223 49-144 (328)
434 PF15297 CKAP2_C: Cytoskeleton 36.6 1.1E+02 0.0023 28.6 6.2 63 136-199 120-186 (353)
435 PF05053 Menin: Menin; InterP 36.6 1.9E+02 0.0042 28.9 8.2 65 152-218 276-347 (618)
436 PF12583 TPPII_N: Tripeptidyl 36.2 54 0.0012 26.5 3.7 24 172-195 94-117 (139)
437 cd02678 MIT_VPS4 MIT: domain c 35.3 91 0.002 21.9 4.5 27 156-183 9-35 (75)
438 PF13812 PPR_3: Pentatricopept 35.3 83 0.0018 17.5 4.4 20 197-217 10-29 (34)
439 PF01239 PPTA: Protein prenylt 35.3 89 0.0019 17.8 4.7 24 174-197 3-26 (31)
440 smart00745 MIT Microtubule Int 34.8 1.5E+02 0.0034 20.4 6.8 44 134-186 4-47 (77)
441 PF08260 Kinin: Insect kinin p 34.2 18 0.00039 15.3 0.4 6 9-14 2-7 (8)
442 PF13041 PPR_2: PPR repeat fam 34.0 1.2E+02 0.0026 18.9 6.7 31 153-184 3-33 (50)
443 PF13226 DUF4034: Domain of un 33.6 2.4E+02 0.0051 25.4 7.8 93 131-223 12-133 (277)
444 cd02656 MIT MIT: domain contai 33.5 1E+02 0.0023 21.3 4.6 20 164-183 16-35 (75)
445 KOG1839 Uncharacterized protei 33.2 57 0.0012 35.2 4.3 91 127-219 981-1087(1236)
446 PF08238 Sel1: Sel1 repeat; I 32.8 1E+02 0.0022 17.8 5.1 13 170-182 24-36 (39)
447 KOG0739 AAA+-type ATPase [Post 32.6 2.7E+02 0.0058 26.1 8.0 47 135-190 7-53 (439)
448 KOG1463 26S proteasome regulat 32.5 2.7E+02 0.006 26.2 8.1 93 128-220 218-318 (411)
449 PRK15326 type III secretion sy 32.5 2E+02 0.0044 21.1 6.8 31 167-197 20-50 (80)
450 KOG0890 Protein kinase of the 32.4 90 0.0019 35.9 5.8 78 132-211 1462-1540(2382)
451 PTZ00009 heat shock 70 kDa pro 32.4 37 0.0008 33.9 2.8 10 103-112 618-627 (653)
452 KOG0276 Vesicle coat complex C 31.7 3E+02 0.0066 28.0 8.7 64 150-215 663-747 (794)
453 PF11266 DUF3066: Protein of u 30.5 1.8E+02 0.004 24.9 6.2 58 136-197 23-80 (219)
454 cd00280 TRFH Telomeric Repeat 30.1 3.6E+02 0.0077 23.2 9.1 65 135-200 85-156 (200)
455 PF00637 Clathrin: Region in C 30.1 22 0.00048 27.4 0.6 78 129-214 17-95 (143)
456 KOG1464 COP9 signalosome, subu 29.9 1.7E+02 0.0036 27.0 6.2 50 132-182 40-93 (440)
457 PRK14983 aldehyde decarbonylas 29.6 2.6E+02 0.0057 24.2 7.0 65 136-208 33-97 (231)
458 PF07219 HemY_N: HemY protein 29.3 2.5E+02 0.0053 21.1 7.0 28 166-194 71-98 (108)
459 KOG0985 Vesicle coat protein c 28.7 1.1E+02 0.0024 33.0 5.4 60 152-218 1103-1162(1666)
460 KOG0739 AAA+-type ATPase [Post 28.7 3.4E+02 0.0073 25.5 8.0 44 166-218 22-71 (439)
461 KOG3262 H/ACA small nucleolar 28.6 83 0.0018 26.9 3.8 14 99-112 6-19 (215)
462 PF11817 Foie-gras_1: Foie gra 27.9 1.3E+02 0.0028 26.0 5.2 57 124-181 183-245 (247)
463 PF05053 Menin: Menin; InterP 27.9 1.4E+02 0.003 29.8 5.7 46 136-182 296-346 (618)
464 TIGR02710 CRISPR-associated pr 27.1 2.9E+02 0.0063 26.0 7.5 48 166-214 142-196 (380)
465 KOG3616 Selective LIM binding 27.1 1.4E+02 0.0029 31.3 5.6 78 122-211 768-846 (1636)
466 PF12753 Nro1: Nuclear pore co 27.0 90 0.002 29.6 4.2 13 170-182 334-346 (404)
467 COG1747 Uncharacterized N-term 27.0 2E+02 0.0043 28.7 6.5 29 167-195 218-246 (711)
468 PF14689 SPOB_a: Sensor_kinase 26.3 1.7E+02 0.0036 19.9 4.5 15 202-216 36-50 (62)
469 KOG1464 COP9 signalosome, subu 25.9 2.1E+02 0.0046 26.4 6.1 50 167-217 40-93 (440)
470 PF14863 Alkyl_sulf_dimr: Alky 25.6 1.6E+02 0.0035 23.7 4.9 34 131-164 82-115 (141)
471 KOG1811 Predicted Zn2+-binding 25.4 1.8E+02 0.0038 29.7 5.9 48 168-219 570-617 (1141)
472 PRK11619 lytic murein transgly 24.9 4.9E+02 0.011 26.2 9.1 51 166-217 324-374 (644)
473 COG2909 MalT ATP-dependent tra 24.5 4.7E+02 0.01 27.5 8.9 69 153-223 415-492 (894)
474 KOG1524 WD40 repeat-containing 24.3 2.4E+02 0.0051 28.2 6.5 77 131-214 585-669 (737)
475 KOG2034 Vacuolar sorting prote 24.3 92 0.002 32.5 3.9 45 166-215 370-415 (911)
476 PF14852 Fis1_TPR_N: Fis1 N-te 24.3 1.1E+02 0.0025 18.6 3.0 11 171-181 21-31 (35)
477 PF10952 DUF2753: Protein of u 24.0 1.7E+02 0.0036 23.6 4.6 52 130-182 12-78 (140)
478 KOG0985 Vesicle coat protein c 23.9 6.2E+02 0.013 27.7 9.6 69 134-216 1063-1131(1666)
479 KOG2041 WD40 repeat protein [G 23.9 1.6E+02 0.0034 30.6 5.3 11 133-143 748-758 (1189)
480 KOG3024 Uncharacterized conser 23.8 3.3E+02 0.0072 24.9 6.9 58 157-215 89-153 (312)
481 TIGR02710 CRISPR-associated pr 22.8 6.5E+02 0.014 23.7 10.5 47 132-178 143-195 (380)
482 KOG2581 26S proteasome regulat 22.6 1.4E+02 0.0031 28.7 4.5 56 132-188 222-281 (493)
483 KOG4014 Uncharacterized conser 22.2 2.8E+02 0.0061 24.1 5.9 68 150-218 31-102 (248)
484 PTZ00009 heat shock 70 kDa pro 21.9 67 0.0014 32.1 2.4 18 96-113 614-632 (653)
485 PF02064 MAS20: MAS20 protein 21.5 2.3E+02 0.005 22.3 4.9 33 158-191 68-100 (121)
486 KOG0105 Alternative splicing f 21.3 1.9E+02 0.0041 25.0 4.7 19 130-148 124-142 (241)
487 PF05944 Phage_term_smal: Phag 21.2 2.3E+02 0.0049 22.6 4.9 26 162-188 57-82 (132)
488 PRK06341 single-stranded DNA-b 20.8 86 0.0019 26.0 2.5 17 99-115 120-136 (166)
489 PF07980 SusD: SusD family; I 20.3 2.1E+02 0.0046 23.8 4.9 26 153-179 133-158 (266)
490 smart00777 Mad3_BUB1_I Mad3/BU 20.2 1.7E+02 0.0037 23.0 4.0 43 136-179 80-124 (125)
491 KOG2114 Vacuolar assembly/sort 20.2 1.3E+02 0.0029 31.3 4.0 53 163-216 343-395 (933)
492 PRK15490 Vi polysaccharide bio 20.1 1.6E+02 0.0035 29.3 4.6 52 126-180 49-100 (578)
493 smart00777 Mad3_BUB1_I Mad3/BU 20.1 4.4E+02 0.0095 20.7 7.9 80 129-214 36-124 (125)
494 KOG0889 Histone acetyltransfer 20.0 1.4E+02 0.003 35.8 4.6 89 126-217 2819-2914(3550)
No 1
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.49 E-value=2.5e-13 Score=109.18 Aligned_cols=94 Identities=12% Similarity=0.068 Sum_probs=87.1
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e 206 (223)
..+...|++++|+.+|++++.++|.+..++.++|.++. ..|++++|+..|+++++++|+++.+++.+|.++.. .|+++
T Consensus 32 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~-~g~~~ 109 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM-MGEPG 109 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHH
Confidence 34456789999999999999999999999999996666 58999999999999999999999999999987777 99999
Q ss_pred HHHHHHHHHHHhCCCC
Q 027439 207 RAESYFDQAVKAAPDD 222 (223)
Q Consensus 207 eAi~~fekAL~l~Pdn 222 (223)
+|+..|+++++++|++
T Consensus 110 eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 110 LAREAFQTAIKMSYAD 125 (144)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 9999999999999986
No 2
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=9.8e-14 Score=123.39 Aligned_cols=90 Identities=20% Similarity=0.278 Sum_probs=85.0
Q ss_pred CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 027439 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES 210 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~ 210 (223)
.+++|.+|+..|.+||+++|.|+.+|.|+|.+|. +++.|+.|++.|+.||.+||+...+|.++|.+++. +|++++|++
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~-~gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA-LGKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc-cCcHHHHHH
Confidence 3579999999999999999999999999997666 69999999999999999999999999999987777 999999999
Q ss_pred HHHHHHHhCCCC
Q 027439 211 YFDQAVKAAPDD 222 (223)
Q Consensus 211 ~fekAL~l~Pdn 222 (223)
.|+|||+++|+|
T Consensus 171 aykKaLeldP~N 182 (304)
T KOG0553|consen 171 AYKKALELDPDN 182 (304)
T ss_pred HHHhhhccCCCc
Confidence 999999999986
No 3
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.42 E-value=1.7e-12 Score=109.79 Aligned_cols=96 Identities=16% Similarity=0.219 Sum_probs=83.8
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGD--LLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK 203 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gd--yeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G 203 (223)
|++|...+++++|+.+|+++++++|+++.++.++|.+++...++ +++|.++++++++.+|+++.+++.+|..++. .|
T Consensus 80 g~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~-~g 158 (198)
T PRK10370 80 GEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM-QA 158 (198)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-cC
Confidence 45667788999999999999999999999999999776555676 5999999999999999999999999988887 99
Q ss_pred CHHHHHHHHHHHHHhCCCC
Q 027439 204 DASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 204 ~~eeAi~~fekAL~l~Pdn 222 (223)
++++|+.+|+++++++|.+
T Consensus 159 ~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 159 DYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred CHHHHHHHHHHHHhhCCCC
Confidence 9999999999999988754
No 4
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.37 E-value=5.7e-12 Score=97.89 Aligned_cols=94 Identities=14% Similarity=0.073 Sum_probs=87.0
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e 206 (223)
..|...+++++|+.+|++++..+|.++.++.++|.+++ .++++++|+.+|++++..+|+++.+++.+|.+++. .|+++
T Consensus 25 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~ 102 (135)
T TIGR02552 25 YNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ-MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA-LGEPE 102 (135)
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-cCCHH
Confidence 44566789999999999999999999999999997776 58999999999999999999999999999988887 99999
Q ss_pred HHHHHHHHHHHhCCCC
Q 027439 207 RAESYFDQAVKAAPDD 222 (223)
Q Consensus 207 eAi~~fekAL~l~Pdn 222 (223)
+|+.+|+++++++|++
T Consensus 103 ~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 103 SALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999999999976
No 5
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.35 E-value=8.1e-12 Score=114.40 Aligned_cols=92 Identities=18% Similarity=0.205 Sum_probs=86.0
Q ss_pred ccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439 129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208 (223)
Q Consensus 129 Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA 208 (223)
+...++|++|+.+|+++++++|+++.++.++|.++. .++++++|+..+++|+.++|+++.+++.+|.+++. .|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~-~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANI-KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-LEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hCCHHHH
Confidence 445689999999999999999999999999997666 58999999999999999999999999999988887 9999999
Q ss_pred HHHHHHHHHhCCCC
Q 027439 209 ESYFDQAVKAAPDD 222 (223)
Q Consensus 209 i~~fekAL~l~Pdn 222 (223)
+.+|+++++++|++
T Consensus 90 ~~~~~~al~l~P~~ 103 (356)
T PLN03088 90 KAALEKGASLAPGD 103 (356)
T ss_pred HHHHHHHHHhCCCC
Confidence 99999999999986
No 6
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.33 E-value=1.4e-11 Score=109.68 Aligned_cols=94 Identities=11% Similarity=0.045 Sum_probs=86.8
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e 206 (223)
..|...|++++|+..|+++++++|+++.+++++|.++. ..+++++|+..|+++++++|++..++..+|.+++. .|+++
T Consensus 72 ~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~ 149 (296)
T PRK11189 72 VLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY-GGRYE 149 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHH
Confidence 35566789999999999999999999999999996555 68999999999999999999999999999988887 99999
Q ss_pred HHHHHHHHHHHhCCCC
Q 027439 207 RAESYFDQAVKAAPDD 222 (223)
Q Consensus 207 eAi~~fekAL~l~Pdn 222 (223)
+|+..|+++++++|++
T Consensus 150 eA~~~~~~al~~~P~~ 165 (296)
T PRK11189 150 LAQDDLLAFYQDDPND 165 (296)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 9999999999999986
No 7
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.24 E-value=4.1e-11 Score=103.66 Aligned_cols=89 Identities=21% Similarity=0.268 Sum_probs=78.9
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e 206 (223)
--|...||+..|.+.++++|+.||++..+|..+| ++|.+.|+.+.|.+.|++|+.++|++++++.+||+++.. +|+++
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A-~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~-qg~~~ 120 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRA-HYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA-QGRPE 120 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH-HHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-CCChH
Confidence 3456678999999999999999999999999999 677788999999999999999999999999999998888 88999
Q ss_pred HHHHHHHHHHH
Q 027439 207 RAESYFDQAVK 217 (223)
Q Consensus 207 eAi~~fekAL~ 217 (223)
+|..+|++|+.
T Consensus 121 eA~q~F~~Al~ 131 (250)
T COG3063 121 EAMQQFERALA 131 (250)
T ss_pred HHHHHHHHHHh
Confidence 99999999876
No 8
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.24 E-value=8.9e-11 Score=96.39 Aligned_cols=87 Identities=9% Similarity=-0.044 Sum_probs=80.5
Q ss_pred CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 027439 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES 210 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~ 210 (223)
..|++++|+..|+.+..+||.+...|.+||.++. .+++|++|+..|.+|+.++|+|+..+++.|.+++. .|+.+.|+.
T Consensus 47 ~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q-~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~-lG~~~~A~~ 124 (157)
T PRK15363 47 EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ-AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA-CDNVCYAIK 124 (157)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-cCCHHHHHH
Confidence 3579999999999999999999999999995555 68999999999999999999999999999987777 999999999
Q ss_pred HHHHHHHhC
Q 027439 211 YFDQAVKAA 219 (223)
Q Consensus 211 ~fekAL~l~ 219 (223)
.|+.|+..-
T Consensus 125 aF~~Ai~~~ 133 (157)
T PRK15363 125 ALKAVVRIC 133 (157)
T ss_pred HHHHHHHHh
Confidence 999999763
No 9
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.22 E-value=2e-10 Score=97.19 Aligned_cols=90 Identities=12% Similarity=0.189 Sum_probs=82.4
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHH
Q 027439 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD--ASRAE 209 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~--~eeAi 209 (223)
.++.++++..|+++++.+|+|+..|..+|.++. ..+++++|+..|++|++++|+++.++..+|.+++...|+ +++|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~-~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYL-WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 568899999999999999999999999996665 689999999999999999999999999999876554787 59999
Q ss_pred HHHHHHHHhCCCC
Q 027439 210 SYFDQAVKAAPDD 222 (223)
Q Consensus 210 ~~fekAL~l~Pdn 222 (223)
..|+++++++|++
T Consensus 131 ~~l~~al~~dP~~ 143 (198)
T PRK10370 131 EMIDKALALDANE 143 (198)
T ss_pred HHHHHHHHhCCCC
Confidence 9999999999986
No 10
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.21 E-value=8.6e-11 Score=81.74 Aligned_cols=68 Identities=26% Similarity=0.327 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 027439 151 RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK-DASRAESYFDQAVKAAP 220 (223)
Q Consensus 151 ~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G-~~eeAi~~fekAL~l~P 220 (223)
.++.+|..+|..++ .+++|++|+.+|+++++++|+++.++..+|.+++. .+ ++++|+..|+++++++|
T Consensus 1 e~a~~~~~~g~~~~-~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYF-QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHcCc
Confidence 36889999997777 58999999999999999999999999999988777 88 79999999999999998
No 11
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.21 E-value=4.1e-11 Score=103.63 Aligned_cols=95 Identities=24% Similarity=0.328 Sum_probs=85.2
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQS 201 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d---~~~l~~lA~ll~~~ 201 (223)
.+..|.+.|+.+.|.+.|++|+.++|++.++++|||.||+. +|+|++|..+|++|++ +|.. ...+-+++.+.++
T Consensus 75 ~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~-qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~- 151 (250)
T COG3063 75 RAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA-QGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALK- 151 (250)
T ss_pred HHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-CCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhh-
Confidence 45778889999999999999999999999999999999995 8999999999999998 5654 5678888866666
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q 027439 202 HKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 202 ~G~~eeAi~~fekAL~l~Pdn 222 (223)
.|+++.|..+|+++++++|++
T Consensus 152 ~gq~~~A~~~l~raL~~dp~~ 172 (250)
T COG3063 152 AGQFDQAEEYLKRALELDPQF 172 (250)
T ss_pred cCCchhHHHHHHHHHHhCcCC
Confidence 999999999999999999975
No 12
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.21 E-value=1.1e-10 Score=80.43 Aligned_cols=93 Identities=18% Similarity=0.225 Sum_probs=84.1
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e 206 (223)
..|...+++++|+..++++++..|.+..++..+|.++. ..+++++|+.+|++++...|.+..++..++.++.. .++++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYY-KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK-LGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-HHhHH
Confidence 34556789999999999999999999999999997666 47999999999999999999999999999988777 99999
Q ss_pred HHHHHHHHHHHhCCC
Q 027439 207 RAESYFDQAVKAAPD 221 (223)
Q Consensus 207 eAi~~fekAL~l~Pd 221 (223)
+|..++++++..+|+
T Consensus 86 ~a~~~~~~~~~~~~~ 100 (100)
T cd00189 86 EALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHccCCC
Confidence 999999999998874
No 13
>PRK12370 invasion protein regulator; Provisional
Probab=99.15 E-value=3.5e-10 Score=108.90 Aligned_cols=89 Identities=16% Similarity=0.167 Sum_probs=80.9
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 027439 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~ 211 (223)
.+++++|+.+++++++++|+++.++..+|.++. .++++++|+.+|++|++++|+++.++..+|.++.. .|++++|+..
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM-AGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHH
Confidence 356899999999999999999999999996555 58999999999999999999999999999988777 9999999999
Q ss_pred HHHHHHhCCCC
Q 027439 212 FDQAVKAAPDD 222 (223)
Q Consensus 212 fekAL~l~Pdn 222 (223)
|+++++++|++
T Consensus 395 ~~~Al~l~P~~ 405 (553)
T PRK12370 395 INECLKLDPTR 405 (553)
T ss_pred HHHHHhcCCCC
Confidence 99999999975
No 14
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.15 E-value=6e-10 Score=83.52 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=83.2
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQ 200 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d---~~~l~~lA~ll~~ 200 (223)
..+...+++++|+.+|+++++.+|++ ..++..+|.++. ..+++++|+.+|++++..+|++ +.++..++.++..
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 88 (119)
T TIGR02795 10 LLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY-AQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE 88 (119)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH
Confidence 44566789999999999999999987 568889997766 5899999999999999999885 6788999988777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC
Q 027439 201 SHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 201 ~~G~~eeAi~~fekAL~l~Pdn 222 (223)
.+++++|+.+|+++++..|++
T Consensus 89 -~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 89 -LGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred -hCChHHHHHHHHHHHHHCcCC
Confidence 999999999999999999986
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.14 E-value=3.3e-10 Score=109.87 Aligned_cols=95 Identities=20% Similarity=0.211 Sum_probs=79.3
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA 205 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ 205 (223)
|.+|...+++++|+.+|+++++++|.+..++.++|.++. .++++++|+.+|+++++++|+++.++..+|.+++. .|++
T Consensus 338 g~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~ 415 (615)
T TIGR00990 338 GTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNL-ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI-KGEF 415 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCH
Confidence 445566788888999999988888888888888886665 47888888888888888888888888888877777 8888
Q ss_pred HHHHHHHHHHHHhCCCC
Q 027439 206 SRAESYFDQAVKAAPDD 222 (223)
Q Consensus 206 eeAi~~fekAL~l~Pdn 222 (223)
++|+.+|+++++++|++
T Consensus 416 ~~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 416 AQAGKDYQKSIDLDPDF 432 (615)
T ss_pred HHHHHHHHHHHHcCccC
Confidence 88888888888888875
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.13 E-value=3.2e-10 Score=109.31 Aligned_cols=98 Identities=17% Similarity=0.303 Sum_probs=89.8
Q ss_pred CCCccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 027439 122 DGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS 201 (223)
Q Consensus 122 ~~~gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~ 201 (223)
.|-.+-.|..+|+.+-|+.+|+++++++|+.+.+++|+|+++.+ .|+..+|+.+|.+|+.++|++++++.++|+++.+
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd-~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E- 366 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD-KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE- 366 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh-ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-
Confidence 44466788889999999999999999999999999999999997 7999999999999999999999999999998888
Q ss_pred cCCHHHHHHHHHHHHHhCCC
Q 027439 202 HKDASRAESYFDQAVKAAPD 221 (223)
Q Consensus 202 ~G~~eeAi~~fekAL~l~Pd 221 (223)
++.+++|...|++|++.+|+
T Consensus 367 ~~~~e~A~~ly~~al~v~p~ 386 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALEVFPE 386 (966)
T ss_pred hccchHHHHHHHHHHhhChh
Confidence 99999999999999998885
No 17
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=3.8e-11 Score=115.61 Aligned_cols=96 Identities=20% Similarity=0.220 Sum_probs=87.3
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~ 204 (223)
.|.+|.-++|+++|+++|++|+++||..+.++.-+|.-+. .+.+|++|..+|++||..+|.+.++|+.+|.++.+ +++
T Consensus 427 ~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~-~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K-qek 504 (638)
T KOG1126|consen 427 LGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESI-ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK-QEK 504 (638)
T ss_pred hcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhh-hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec-cch
Confidence 6788888999999999999999999999999988884444 57899999999999999999999999999988777 999
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 027439 205 ASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 205 ~eeAi~~fekAL~l~Pdn 222 (223)
++.|+.+|++|+++||.|
T Consensus 505 ~e~Ae~~fqkA~~INP~n 522 (638)
T KOG1126|consen 505 LEFAEFHFQKAVEINPSN 522 (638)
T ss_pred hhHHHHHHHhhhcCCccc
Confidence 999999999999999976
No 18
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.09 E-value=3.1e-10 Score=82.43 Aligned_cols=81 Identities=19% Similarity=0.311 Sum_probs=71.5
Q ss_pred CCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 027439 132 NHGNNSTDLYYQKMIQADPR--NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE 209 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~--n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi 209 (223)
+++|++|+.+|+++++.+|. +..++..+|.+++ +.++|++|+.++++ +..+|.+...++.+|.+++. +|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~-~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~-l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYF-QQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK-LGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHH-HTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH-HCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH-hCCHHHHH
Confidence 46899999999999999995 5677888998888 58999999999999 88899999999999988888 99999999
Q ss_pred HHHHHH
Q 027439 210 SYFDQA 215 (223)
Q Consensus 210 ~~fekA 215 (223)
..|++|
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999986
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.09 E-value=1.8e-10 Score=110.93 Aligned_cols=96 Identities=22% Similarity=0.239 Sum_probs=86.8
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~ 204 (223)
-+.+|.++|++++|+.+|++++++.|..++++.|+|..+.+ .|+...|+.+|.+||.++|..++++.++|.++-. .|+
T Consensus 394 La~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke-~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kD-sGn 471 (966)
T KOG4626|consen 394 LASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKE-MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKD-SGN 471 (966)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHH-hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhc-cCC
Confidence 45677788999999999999999999999999999988885 7999999999999999999999999999965544 999
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 027439 205 ASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 205 ~eeAi~~fekAL~l~Pdn 222 (223)
..+|++.|+.||++.||.
T Consensus 472 i~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 472 IPEAIQSYRTALKLKPDF 489 (966)
T ss_pred cHHHHHHHHHHHccCCCC
Confidence 999999999999999873
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.09 E-value=7.5e-10 Score=107.35 Aligned_cols=94 Identities=13% Similarity=0.186 Sum_probs=74.0
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e 206 (223)
.+|...+++++|+.+|+++++++|+++.++.++|.+++ ..+++++|+.+|++++.++|++..++..+|.+++. +|+++
T Consensus 373 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~-~g~~~ 450 (615)
T TIGR00990 373 SMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK-EGSIA 450 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH-CCCHH
Confidence 44555678888888888888888888888888886555 47888888888888888888888888888877666 88888
Q ss_pred HHHHHHHHHHHhCCCC
Q 027439 207 RAESYFDQAVKAAPDD 222 (223)
Q Consensus 207 eAi~~fekAL~l~Pdn 222 (223)
+|+.+|++++..+|++
T Consensus 451 eA~~~~~~al~~~P~~ 466 (615)
T TIGR00990 451 SSMATFRRCKKNFPEA 466 (615)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 8888888888877764
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.08 E-value=6.9e-10 Score=113.52 Aligned_cols=95 Identities=14% Similarity=0.164 Sum_probs=78.9
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA 205 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ 205 (223)
|.++...+++++|+.+|+++++++|+++.++.++|.++. ..+++++|+.+|++|++++|+++.++..+|.++.. .|++
T Consensus 616 A~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~-~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~-lGd~ 693 (987)
T PRK09782 616 ATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALW-DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR-LDDM 693 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCH
Confidence 345566788888888888888888888888888886666 47888888888888888888888888888877766 8888
Q ss_pred HHHHHHHHHHHHhCCCC
Q 027439 206 SRAESYFDQAVKAAPDD 222 (223)
Q Consensus 206 eeAi~~fekAL~l~Pdn 222 (223)
++|+.+|+++++++|++
T Consensus 694 ~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 694 AATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 88888888888888875
No 22
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.06 E-value=1e-09 Score=88.19 Aligned_cols=82 Identities=11% Similarity=0.114 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027439 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQA 215 (223)
Q Consensus 136 ~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekA 215 (223)
.--+.+|+++++++|++ +.++|..+. ..|++++|+.+|++++.++|++..++..+|.++.. .|++++|+..|+++
T Consensus 10 ~~~~~~~~~al~~~p~~---~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~~A 84 (144)
T PRK15359 10 KIPEDILKQLLSVDPET---VYASGYASW-QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYGHA 84 (144)
T ss_pred CCHHHHHHHHHHcCHHH---HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHH
Confidence 33568999999999996 456786676 48999999999999999999999999999988888 99999999999999
Q ss_pred HHhCCCC
Q 027439 216 VKAAPDD 222 (223)
Q Consensus 216 L~l~Pdn 222 (223)
++++|++
T Consensus 85 l~l~p~~ 91 (144)
T PRK15359 85 LMLDASH 91 (144)
T ss_pred HhcCCCC
Confidence 9999976
No 23
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.05 E-value=9.4e-10 Score=75.80 Aligned_cols=63 Identities=24% Similarity=0.435 Sum_probs=51.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 158 NYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 158 nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
.+|..++ ..++|++|+.+|+++++.+|+++.++..+|.+++. +|++++|+.+|+++++++|+|
T Consensus 2 ~~a~~~~-~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALY-QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHH-HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCC
Confidence 4565555 47889999999999999999999999999988887 899999999999999888876
No 24
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=7.5e-10 Score=104.80 Aligned_cols=95 Identities=20% Similarity=0.214 Sum_probs=87.3
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA 205 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ 205 (223)
|..++..+||..|+.+|.+||+.+|+++.+|.|+|. ++..++.+..|+..|+++++++|++...+.+-|.+++. ..+|
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAa-c~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~-mk~y 442 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAA-CYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA-MKEY 442 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHH-HHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HHHH
Confidence 345567789999999999999999999999999995 44479999999999999999999999999999988777 9999
Q ss_pred HHHHHHHHHHHHhCCCC
Q 027439 206 SRAESYFDQAVKAAPDD 222 (223)
Q Consensus 206 eeAi~~fekAL~l~Pdn 222 (223)
++|++.|+++++++|++
T Consensus 443 dkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 443 DKALEAYQEALELDPSN 459 (539)
T ss_pred HHHHHHHHHHHhcCchh
Confidence 99999999999999975
No 25
>PRK12370 invasion protein regulator; Provisional
Probab=99.03 E-value=1.7e-09 Score=104.17 Aligned_cols=92 Identities=13% Similarity=0.056 Sum_probs=82.1
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA 205 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ 205 (223)
|.++...+++++|+++|+++++++|+++.++.++|.++. ..|++++|+.+++++++++|+++.++..++.+++. .|++
T Consensus 345 g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~-~g~~ 422 (553)
T PRK12370 345 GLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLF-MAGQLEEALQTINECLKLDPTRAAAGITKLWITYY-HTGI 422 (553)
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-ccCH
Confidence 445566789999999999999999999999999997666 58999999999999999999998887777767777 8999
Q ss_pred HHHHHHHHHHHHhC
Q 027439 206 SRAESYFDQAVKAA 219 (223)
Q Consensus 206 eeAi~~fekAL~l~ 219 (223)
++|+..+++++..+
T Consensus 423 eeA~~~~~~~l~~~ 436 (553)
T PRK12370 423 DDAIRLGDELRSQH 436 (553)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999875
No 26
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.03 E-value=2.1e-09 Score=88.03 Aligned_cols=95 Identities=19% Similarity=0.324 Sum_probs=81.7
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH 202 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~ 202 (223)
|..|...+++++|+.+|++++++.|+. ..++.++|.++. ..+++++|+.++++++..+|++...+..++.++.. .
T Consensus 42 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~ 119 (172)
T PRK02603 42 GMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-SNGEHDKALEYYHQALELNPKQPSALNNIAVIYHK-R 119 (172)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-c
Confidence 455667789999999999999987763 578999995555 68999999999999999999999999999987766 7
Q ss_pred CC--------------HHHHHHHHHHHHHhCCCC
Q 027439 203 KD--------------ASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 203 G~--------------~eeAi~~fekAL~l~Pdn 222 (223)
++ +++|+.++++++..+|+|
T Consensus 120 g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 120 GEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred CChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 76 678889999999989986
No 27
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.03 E-value=3e-09 Score=86.47 Aligned_cols=91 Identities=26% Similarity=0.386 Sum_probs=80.2
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA 205 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ 205 (223)
+..|...+++++|+..|+++++.+|.+..++..+|.++. ..+++++|+++++++++.+|++..++..++.++.. .|++
T Consensus 38 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~g~~ 115 (234)
T TIGR02521 38 ALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQ-QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ-QGKY 115 (234)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cccH
Confidence 455666789999999999999999999999999996655 58999999999999999999999999999987777 8999
Q ss_pred HHHHHHHHHHHHh
Q 027439 206 SRAESYFDQAVKA 218 (223)
Q Consensus 206 eeAi~~fekAL~l 218 (223)
++|+.+|++++..
T Consensus 116 ~~A~~~~~~~~~~ 128 (234)
T TIGR02521 116 EQAMQQFEQAIED 128 (234)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998874
No 28
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.01 E-value=3.9e-09 Score=85.98 Aligned_cols=95 Identities=20% Similarity=0.257 Sum_probs=78.4
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIW--- 199 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~--- 199 (223)
|.++..++++++|+.+|++++.+.|+. +.++.++|.++. ..+++++|+.+|++|+.++|.+...+..++.++.
T Consensus 42 g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 42 GMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 445566789999999999999997763 458999995555 6899999999999999999999999999998877
Q ss_pred ----HHcCCHH-------HHHHHHHHHHHhCCCC
Q 027439 200 ----QSHKDAS-------RAESYFDQAVKAAPDD 222 (223)
Q Consensus 200 ----~~~G~~e-------eAi~~fekAL~l~Pdn 222 (223)
. .|+++ +|+.+|++++..+|++
T Consensus 121 ~~~~~-~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 121 EQAIE-QGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHH-cccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 5 67766 6666677778888864
No 29
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.99 E-value=3.5e-09 Score=82.07 Aligned_cols=82 Identities=15% Similarity=0.056 Sum_probs=76.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 027439 140 LYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAA 219 (223)
Q Consensus 140 ~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~ 219 (223)
+.|+++++.+|++..+...+|..++ ..+++++|.+++++++..+|+++.++..+|.+++. .+++++|+.+|+++++.+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLY-QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence 6799999999999999999997666 58999999999999999999999999999988888 899999999999999999
Q ss_pred CCCC
Q 027439 220 PDDW 223 (223)
Q Consensus 220 Pdn~ 223 (223)
|+++
T Consensus 82 p~~~ 85 (135)
T TIGR02552 82 PDDP 85 (135)
T ss_pred CCCh
Confidence 9864
No 30
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=3e-09 Score=98.15 Aligned_cols=96 Identities=17% Similarity=0.139 Sum_probs=84.5
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPRN---------------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN 189 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n---------------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~ 189 (223)
=|..|++.++|..|...|++++..-+.. ..++.|+| +++.++++|.+|+..|.++|+++|+|..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA-~c~lKl~~~~~Ai~~c~kvLe~~~~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLA-ACYLKLKEYKEAIESCNKVLELDPNNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHH-HHHHhhhhHHHHHHHHHHHHhcCCCchh
Confidence 4567788899999999999999864321 34688999 4555799999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 190 VLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 190 ~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
+++..|.++.. .++|+.|+..|++|++++|+|
T Consensus 293 ALyRrG~A~l~-~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 293 ALYRRGQALLA-LGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred HHHHHHHHHHh-hccHHHHHHHHHHHHHhCCCc
Confidence 99999999888 999999999999999999997
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.97 E-value=5.5e-10 Score=97.70 Aligned_cols=97 Identities=23% Similarity=0.262 Sum_probs=74.9
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~ 204 (223)
-+.+|...|++++|+.+|+++++.+|+|..++..++.++. ..++++++.+.+.+.....|+|+.++..+|.+++. .|+
T Consensus 152 ~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~-lg~ 229 (280)
T PF13429_consen 152 LAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLI-DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ-LGR 229 (280)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH-HT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc-ccc
Confidence 3456677788999999999999999999998888886555 46888888888888877778888888888877776 888
Q ss_pred HHHHHHHHHHHHHhCCCCC
Q 027439 205 ASRAESYFDQAVKAAPDDW 223 (223)
Q Consensus 205 ~eeAi~~fekAL~l~Pdn~ 223 (223)
+++|+.+|+++++.+|+|+
T Consensus 230 ~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 230 YEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHHHHHHHHHHHSTT-H
T ss_pred ccccccccccccccccccc
Confidence 8888888888888888763
No 32
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.97 E-value=7.2e-09 Score=84.22 Aligned_cols=95 Identities=21% Similarity=0.307 Sum_probs=63.7
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcC
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNVLSMYGDLIWQSHK 203 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld--P~d~~~l~~lA~ll~~~~G 203 (223)
+.+|...+++++|+++|+++++.+|.+..++.+++.++. ..+++++|+.+|++++... +.....+..++.+++. .|
T Consensus 72 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g 149 (234)
T TIGR02521 72 ALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC-QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK-AG 149 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH-cC
Confidence 345556677888888888888888877777777775554 4677777777777776642 3445566666655555 67
Q ss_pred CHHHHHHHHHHHHHhCCCC
Q 027439 204 DASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 204 ~~eeAi~~fekAL~l~Pdn 222 (223)
++++|+.+|+++++.+|++
T Consensus 150 ~~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 150 DFDKAEKYLTRALQIDPQR 168 (234)
T ss_pred CHHHHHHHHHHHHHhCcCC
Confidence 7777777777776666653
No 33
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=5e-09 Score=93.45 Aligned_cols=97 Identities=20% Similarity=0.210 Sum_probs=87.5
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG--DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH 202 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~g--dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~ 202 (223)
-|+.|..++++..|...|++++++.|+|+.++..||.+++...+ ...+|..++++++.+||+|..+++.+|..++. .
T Consensus 162 Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe-~ 240 (287)
T COG4235 162 LGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFE-Q 240 (287)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-c
Confidence 46778889999999999999999999999999999999886443 46889999999999999999999999988888 9
Q ss_pred CCHHHHHHHHHHHHHhCCCC
Q 027439 203 KDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 203 G~~eeAi~~fekAL~l~Pdn 222 (223)
|+|.+|+..|++.+...|.|
T Consensus 241 g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 241 GDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred ccHHHHHHHHHHHHhcCCCC
Confidence 99999999999999998764
No 34
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.93 E-value=1.3e-09 Score=75.13 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=54.5
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG 188 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~ 188 (223)
..|...+++++|+.+|+++++.+|+++.++..+|.++. .+|++++|+.+|+++++++|+++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence 45667789999999999999999999999999997777 58999999999999999999986
No 35
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=1.3e-09 Score=103.90 Aligned_cols=95 Identities=15% Similarity=0.055 Sum_probs=85.1
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~ 204 (223)
-|-+|-..++|++|+.||+.||..+|+|...|+.||..+. .-.+.++|+..|+||+++.|.+..+++++|..+.. +|.
T Consensus 436 LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA-N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN-lG~ 513 (579)
T KOG1125|consen 436 LGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA-NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN-LGA 513 (579)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc-CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh-hhh
Confidence 4556777889999999999999999999999999996665 35689999999999999999999999999966666 999
Q ss_pred HHHHHHHHHHHHHhCCC
Q 027439 205 ASRAESYFDQAVKAAPD 221 (223)
Q Consensus 205 ~eeAi~~fekAL~l~Pd 221 (223)
|++|+.+|-.||.+.+.
T Consensus 514 ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 514 YKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 99999999999988654
No 36
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.93 E-value=5.8e-09 Score=103.33 Aligned_cols=91 Identities=9% Similarity=0.050 Sum_probs=83.0
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 027439 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE 209 (223)
Q Consensus 130 ~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi 209 (223)
...|.+++|+..++++++++|++..++.+++.++. +++++++|+..+++++..+|+++.+++.+|.++.. .|++++|+
T Consensus 97 ~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~-~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~-~g~~~~A~ 174 (694)
T PRK15179 97 EAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVK-RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDE-IGQSEQAD 174 (694)
T ss_pred HHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-hcchHHHH
Confidence 44589999999999999999999999999998888 58999999999999999999999999999977776 99999999
Q ss_pred HHHHHHHHhCCCC
Q 027439 210 SYFDQAVKAAPDD 222 (223)
Q Consensus 210 ~~fekAL~l~Pdn 222 (223)
.+|+++++.+|++
T Consensus 175 ~~y~~~~~~~p~~ 187 (694)
T PRK15179 175 ACFERLSRQHPEF 187 (694)
T ss_pred HHHHHHHhcCCCc
Confidence 9999999988763
No 37
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.90 E-value=9.6e-09 Score=101.03 Aligned_cols=92 Identities=12% Similarity=0.106 Sum_probs=51.6
Q ss_pred ccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439 129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLK----AEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (223)
Q Consensus 129 Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyee----A~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~ 204 (223)
+...+++++|+..|+++++.+|+++.++.++|..+. ..|++++ |+.+|+++++++|+++.++..+|.++.. .|+
T Consensus 222 l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~-~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~ 299 (656)
T PRK15174 222 LCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYY-QSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR-TGQ 299 (656)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCC
Confidence 334455556666666666555655555555554444 3455553 5555555555555555555555555554 555
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 027439 205 ASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 205 ~eeAi~~fekAL~l~Pdn 222 (223)
+++|+.+|+++++++|++
T Consensus 300 ~~eA~~~l~~al~l~P~~ 317 (656)
T PRK15174 300 NEKAIPLLQQSLATHPDL 317 (656)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 555555555555555543
No 38
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.90 E-value=1e-08 Score=100.86 Aligned_cols=95 Identities=18% Similarity=0.142 Sum_probs=76.2
Q ss_pred cccccCCCChHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 027439 126 GSWDPNNHGNNS----TDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS 201 (223)
Q Consensus 126 g~~Y~~~gd~~e----A~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~ 201 (223)
|..|...+++++ |+.+|+++++++|+++.++.++|.++. .++++++|+.++++++.++|+++.++..++.++..
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~- 330 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALI-RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ- 330 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Confidence 344555667764 788888888888888888888886666 47888888888888888888888888888877666
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q 027439 202 HKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 202 ~G~~eeAi~~fekAL~l~Pdn 222 (223)
.|++++|+..|++++..+|++
T Consensus 331 ~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 331 VGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred CCCHHHHHHHHHHHHHhCccc
Confidence 888888888888888888764
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=2.2e-09 Score=103.62 Aligned_cols=96 Identities=18% Similarity=0.235 Sum_probs=81.5
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~ 204 (223)
.|+-+....+|+.|..+|+.|+..+|.+-.+|+-+|.++. ++++++.|+-+|++|++++|.+..++..++.++.. .|+
T Consensus 461 lGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~-Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~-~k~ 538 (638)
T KOG1126|consen 461 LGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL-KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ-LKR 538 (638)
T ss_pred cCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee-ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-hhh
Confidence 5566666788999999999999999999999999995555 68899999999999999999998888888876666 899
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 027439 205 ASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 205 ~eeAi~~fekAL~l~Pdn 222 (223)
.++|+.+|++|+.++|.|
T Consensus 539 ~d~AL~~~~~A~~ld~kn 556 (638)
T KOG1126|consen 539 KDKALQLYEKAIHLDPKN 556 (638)
T ss_pred hhHHHHHHHHHHhcCCCC
Confidence 999999999999988865
No 40
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.90 E-value=1.6e-08 Score=103.66 Aligned_cols=87 Identities=18% Similarity=0.270 Sum_probs=81.7
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF 212 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~f 212 (223)
|++++|+.+|+++++++|+ +.++.++|.++. +.+++++|+.+|+++++++|+++.++..+|.++.. .|++++|+..|
T Consensus 590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~-~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~~eeAi~~l 666 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPS-ANAYVARATIYR-QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SGDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 8999999999999999996 999999996666 68999999999999999999999999999988887 99999999999
Q ss_pred HHHHHhCCCC
Q 027439 213 DQAVKAAPDD 222 (223)
Q Consensus 213 ekAL~l~Pdn 222 (223)
++|++++|++
T Consensus 667 ~~AL~l~P~~ 676 (987)
T PRK09782 667 ERAHKGLPDD 676 (987)
T ss_pred HHHHHhCCCC
Confidence 9999999986
No 41
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.90 E-value=1.4e-08 Score=90.45 Aligned_cols=96 Identities=16% Similarity=0.152 Sum_probs=78.1
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~ 204 (223)
-|..|...+++++|++.|+++++++|++..++.++|.+++ ..+++++|++.|+++++++|+++... .+..++.. .++
T Consensus 104 lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~-~~~ 180 (296)
T PRK11189 104 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY-YGGRYELAQDDLLAFYQDDPNDPYRA-LWLYLAES-KLD 180 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHc-cCC
Confidence 3456677899999999999999999999999999997777 58999999999999999999998432 22223334 789
Q ss_pred HHHHHHHHHHHHHh-CCCCC
Q 027439 205 ASRAESYFDQAVKA-APDDW 223 (223)
Q Consensus 205 ~eeAi~~fekAL~l-~Pdn~ 223 (223)
+++|+..|++++.. +|+.|
T Consensus 181 ~~~A~~~l~~~~~~~~~~~~ 200 (296)
T PRK11189 181 PKQAKENLKQRYEKLDKEQW 200 (296)
T ss_pred HHHHHHHHHHHHhhCCcccc
Confidence 99999999887655 44444
No 42
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.86 E-value=2.9e-09 Score=73.95 Aligned_cols=59 Identities=24% Similarity=0.264 Sum_probs=53.4
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCC
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG-DLLKAEEYCARAILMSP 185 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~g-dyeeA~~~~ekAL~ldP 185 (223)
|..|...+++++|+.+|+++++++|+++.++.++|.++. .++ ++++|+++|+++++++|
T Consensus 10 g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~-~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 10 GQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYM-KLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHcCc
Confidence 345667889999999999999999999999999996666 578 79999999999999998
No 43
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.85 E-value=1.5e-08 Score=88.89 Aligned_cols=92 Identities=14% Similarity=0.089 Sum_probs=83.1
Q ss_pred cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 027439 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (223)
Q Consensus 128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee 207 (223)
....+|+|.+|+..++++..++|+|..+|+.+| +.+.+.|+++.|...|.+|+++.|+++.++.+++..++. .|+++.
T Consensus 109 ~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg-aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-~gd~~~ 186 (257)
T COG5010 109 NQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG-AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL-RGDLED 186 (257)
T ss_pred HHHHhcchHHHHHHHHHHhccCCCChhhhhHHH-HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-cCCHHH
Confidence 334578999999999999999999999999999 555579999999999999999999999999999988888 999999
Q ss_pred HHHHHHHHHHhCCC
Q 027439 208 AESYFDQAVKAAPD 221 (223)
Q Consensus 208 Ai~~fekAL~l~Pd 221 (223)
|..++.++....+.
T Consensus 187 A~~lll~a~l~~~a 200 (257)
T COG5010 187 AETLLLPAYLSPAA 200 (257)
T ss_pred HHHHHHHHHhCCCC
Confidence 99999999776553
No 44
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.85 E-value=8.8e-09 Score=71.18 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=57.9
Q ss_pred CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027439 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGD 196 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ 196 (223)
..+++++|+.+|+++++.+|+|..++..+|.++. ..|++++|...+++++..+|+++.++..++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3579999999999999999999999999997777 5899999999999999999999888887774
No 45
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.85 E-value=1.6e-08 Score=85.78 Aligned_cols=94 Identities=17% Similarity=0.200 Sum_probs=81.8
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPRNP---LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN---VLSMYGDLIWQ 200 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~---~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~---~l~~lA~ll~~ 200 (223)
..|...+++++|+..|+++++.+|+++ .++..+|.+++ ..+++++|+..|+++++.+|+++. +++.++.+++.
T Consensus 41 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~ 119 (235)
T TIGR03302 41 KEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYY-KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYN 119 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHH
Confidence 345567899999999999999999886 57789997666 589999999999999999998887 68888877766
Q ss_pred Hc--------CCHHHHHHHHHHHHHhCCCC
Q 027439 201 SH--------KDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 201 ~~--------G~~eeAi~~fekAL~l~Pdn 222 (223)
. +++++|+..|++++..+|++
T Consensus 120 -~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 148 (235)
T TIGR03302 120 -QIDRVDRDQTAAREAFEAFQELIRRYPNS 148 (235)
T ss_pred -hcccccCCHHHHHHHHHHHHHHHHHCCCC
Confidence 4 78999999999999999986
No 46
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.84 E-value=2.3e-08 Score=96.51 Aligned_cols=94 Identities=24% Similarity=0.366 Sum_probs=71.3
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA 205 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ 205 (223)
+.+|...+++++|+.+|+++++.+|+++.++.+++..+. ..++ ++|+.++++++.+.|+++.++..+|.+++. .|++
T Consensus 777 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~ 853 (899)
T TIGR02917 777 AELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL-ELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE-KGEA 853 (899)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCH
Confidence 345555677788888888888888888877777775444 4666 778888888888888888888788877666 8888
Q ss_pred HHHHHHHHHHHHhCCCC
Q 027439 206 SRAESYFDQAVKAAPDD 222 (223)
Q Consensus 206 eeAi~~fekAL~l~Pdn 222 (223)
++|+.+|+++++.+|++
T Consensus 854 ~~A~~~~~~a~~~~~~~ 870 (899)
T TIGR02917 854 DRALPLLRKAVNIAPEA 870 (899)
T ss_pred HHHHHHHHHHHhhCCCC
Confidence 88888888888887764
No 47
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.81 E-value=3.2e-08 Score=102.78 Aligned_cols=53 Identities=15% Similarity=0.228 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439 168 GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD 221 (223)
Q Consensus 168 gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd 221 (223)
+++++|+++|+++++++|+++.+++.+|.+++. .|++++|+..|+++++.+|+
T Consensus 475 g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~-~G~~~~A~~~l~~al~~~P~ 527 (1157)
T PRK11447 475 GKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ-AGQRSQADALMRRLAQQKPN 527 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCC
Confidence 444445555555555555555444444444444 45555555555555444443
No 48
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.81 E-value=6.5e-08 Score=85.59 Aligned_cols=91 Identities=15% Similarity=0.268 Sum_probs=81.1
Q ss_pred cCCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcC
Q 027439 130 PNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN---DGNVLSMYGDLIWQSHK 203 (223)
Q Consensus 130 ~~~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~---d~~~l~~lA~ll~~~~G 203 (223)
...++|++|+..|++.++..|++ +.+++.+|.+++ ..++|++|+..|++++...|+ .+++++.+|.++.. .|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~-~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~-~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY-NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD-KG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH-cC
Confidence 34589999999999999999998 578999997777 589999999999999998887 47888888977777 99
Q ss_pred CHHHHHHHHHHHHHhCCCC
Q 027439 204 DASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 204 ~~eeAi~~fekAL~l~Pdn 222 (223)
++++|+.+|+++++..|+.
T Consensus 232 ~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 232 DTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred CHHHHHHHHHHHHHHCcCC
Confidence 9999999999999999874
No 49
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.80 E-value=3.8e-08 Score=98.26 Aligned_cols=94 Identities=16% Similarity=0.085 Sum_probs=84.9
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA 205 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ 205 (223)
+.+|...+++++|+++|+++++++|.++.++..++.++. ..+++++|+.+++++++.+|+++. +..+|.++.. .|++
T Consensus 56 A~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~-~g~~ 132 (765)
T PRK10049 56 AVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR-AGRH 132 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-CCCH
Confidence 345566789999999999999999999999999996665 589999999999999999999999 9999977777 9999
Q ss_pred HHHHHHHHHHHHhCCCC
Q 027439 206 SRAESYFDQAVKAAPDD 222 (223)
Q Consensus 206 eeAi~~fekAL~l~Pdn 222 (223)
++|+..|+++++++|++
T Consensus 133 ~~Al~~l~~al~~~P~~ 149 (765)
T PRK10049 133 WDELRAMTQALPRAPQT 149 (765)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 99999999999999986
No 50
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.79 E-value=9.3e-09 Score=93.94 Aligned_cols=96 Identities=18% Similarity=0.109 Sum_probs=88.0
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~ 204 (223)
-|.-|+.+|.|++|+.||.+++.++|.|+..+.|+|.+|+ +++.|..|+.-|..|+.+|.....++...+.+-.. +|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYl-k~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~-Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYL-KQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES-LGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHH-HHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH-Hhh
Confidence 3456888999999999999999999999999999996666 68999999999999999999999999999977666 999
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 027439 205 ASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 205 ~eeAi~~fekAL~l~Pdn 222 (223)
..+|...++.+|++.|++
T Consensus 181 ~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhHHHHHhhCccc
Confidence 999999999999999975
No 51
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.79 E-value=4.3e-08 Score=94.69 Aligned_cols=95 Identities=17% Similarity=0.214 Sum_probs=80.8
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA 205 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ 205 (223)
|..|...+++++|+..|+++++.+|++..++..+|..+. ..+++++|+..++++++.+|++..++..++.+++. .|++
T Consensus 132 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~ 209 (899)
T TIGR02917 132 GLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLAL-AENRFDEARALIDEVLTADPGNVDALLLKGDLLLS-LGNI 209 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh-cCCH
Confidence 455566788999999999999999999888888886666 47899999999999999999998888888877777 8999
Q ss_pred HHHHHHHHHHHHhCCCC
Q 027439 206 SRAESYFDQAVKAAPDD 222 (223)
Q Consensus 206 eeAi~~fekAL~l~Pdn 222 (223)
++|+..|++++..+|++
T Consensus 210 ~~A~~~~~~a~~~~p~~ 226 (899)
T TIGR02917 210 ELALAAYRKAIALRPNN 226 (899)
T ss_pred HHHHHHHHHHHhhCCCC
Confidence 99999999998888865
No 52
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.79 E-value=4.1e-08 Score=98.00 Aligned_cols=94 Identities=19% Similarity=0.187 Sum_probs=86.4
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e 206 (223)
..+...+++++|+++|+++++..|+++.++.++|.++. ..+++++|++.+++|++++|++..++..+|.++.. .++++
T Consensus 367 ~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~-~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~-~~~~~ 444 (765)
T PRK10049 367 QVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ-ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD-LQEWR 444 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH-hCCHH
Confidence 35566789999999999999999999999999996555 68999999999999999999999999999987776 99999
Q ss_pred HHHHHHHHHHHhCCCC
Q 027439 207 RAESYFDQAVKAAPDD 222 (223)
Q Consensus 207 eAi~~fekAL~l~Pdn 222 (223)
+|+..++++++..|+|
T Consensus 445 ~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 445 QMDVLTDDVVAREPQD 460 (765)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 9999999999999987
No 53
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.77 E-value=3.5e-08 Score=69.08 Aligned_cols=68 Identities=22% Similarity=0.245 Sum_probs=57.0
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG 195 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA 195 (223)
..|...++|++|+++++++++++|+++..+..+|.+++ ..|++++|++.|+++++.+|+++.+....+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 35667789999999999999999999999999996666 589999999999999999998887776554
No 54
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.76 E-value=4.5e-08 Score=101.66 Aligned_cols=95 Identities=17% Similarity=0.170 Sum_probs=86.9
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~ 204 (223)
-+.+|...+++++|+.+|+++++.+|+++.++.+++.++. ..+++++|+++|++++..+|+++.++..+|.++.. .|+
T Consensus 609 La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~-~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~-~g~ 686 (1157)
T PRK11447 609 LADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDI-AQGDLAAARAQLAKLPATANDSLNTQRRVALAWAA-LGD 686 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHh-CCC
Confidence 4567788899999999999999999999999999997666 58999999999999999999999999999987777 999
Q ss_pred HHHHHHHHHHHHHhCCC
Q 027439 205 ASRAESYFDQAVKAAPD 221 (223)
Q Consensus 205 ~eeAi~~fekAL~l~Pd 221 (223)
+++|+.+|++++...|+
T Consensus 687 ~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 687 TAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHHHHHHHHHHhhhCcc
Confidence 99999999999988654
No 55
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.75 E-value=8.4e-08 Score=86.51 Aligned_cols=94 Identities=17% Similarity=0.145 Sum_probs=70.0
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCH
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND-GNVLSMYGDLIWQSHKDA 205 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d-~~~l~~lA~ll~~~~G~~ 205 (223)
..|...+++++|+.+|+++++.+|++..++..+|.++. ..+++++|++++++++..+|++ ..++..++.++.. .|++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~g~~ 265 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLAL-AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA-LGDE 265 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH-cCCH
Confidence 34455678888888888888888888888888885555 4788888888888888877765 3456667766666 7888
Q ss_pred HHHHHHHHHHHHhCCCC
Q 027439 206 SRAESYFDQAVKAAPDD 222 (223)
Q Consensus 206 eeAi~~fekAL~l~Pdn 222 (223)
++|+..++++++..|++
T Consensus 266 ~~A~~~l~~~~~~~p~~ 282 (389)
T PRK11788 266 AEGLEFLRRALEEYPGA 282 (389)
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 88888888887777753
No 56
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.74 E-value=6.3e-08 Score=96.05 Aligned_cols=90 Identities=11% Similarity=0.021 Sum_probs=82.2
Q ss_pred cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 027439 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (223)
Q Consensus 128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee 207 (223)
...+.+++++|+..++++++.+|+++.+++.+|.++. ..|+|++|+++|++++..+|++++++..+|.++.. .|+.++
T Consensus 129 ~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~-~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~-~G~~~~ 206 (694)
T PRK15179 129 GVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD-EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR-RGALWR 206 (694)
T ss_pred HHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHH
Confidence 3345689999999999999999999999999997666 58999999999999999999999999999976666 999999
Q ss_pred HHHHHHHHHHhC
Q 027439 208 AESYFDQAVKAA 219 (223)
Q Consensus 208 Ai~~fekAL~l~ 219 (223)
|...|++|++..
T Consensus 207 A~~~~~~a~~~~ 218 (694)
T PRK15179 207 ARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHHhh
Confidence 999999999874
No 57
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=3.9e-08 Score=92.34 Aligned_cols=93 Identities=17% Similarity=0.194 Sum_probs=63.2
Q ss_pred cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 027439 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (223)
Q Consensus 128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee 207 (223)
.|.-.++.++|+.+|++|+++||....+|.-+|--+. ..++...|+..|++|++++|.|..+|+.+|.++-. .+.+.=
T Consensus 339 YYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyv-EmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-m~Mh~Y 416 (559)
T KOG1155|consen 339 YYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYV-EMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-MKMHFY 416 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHH-HhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-hcchHH
Confidence 3444456677777777777777777777777774333 35677777777777777777777777777755444 666666
Q ss_pred HHHHHHHHHHhCCCC
Q 027439 208 AESYFDQAVKAAPDD 222 (223)
Q Consensus 208 Ai~~fekAL~l~Pdn 222 (223)
|+.+|++|.++-|+|
T Consensus 417 aLyYfqkA~~~kPnD 431 (559)
T KOG1155|consen 417 ALYYFQKALELKPND 431 (559)
T ss_pred HHHHHHHHHhcCCCc
Confidence 777777777776665
No 58
>PLN02789 farnesyltranstransferase
Probab=98.70 E-value=1.1e-07 Score=86.44 Aligned_cols=87 Identities=9% Similarity=0.074 Sum_probs=74.2
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 027439 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDL--LKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdy--eeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~ 211 (223)
++++++.+++++++.+|++..+|..++.++. ..++. ++++.+++++++.+|+|..+|...++++.. .+++++|+++
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~-~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~-l~~~~eeL~~ 164 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAE-KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT-LGGWEDELEY 164 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHH-HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hhhHHHHHHH
Confidence 5788999999999999999999998885554 46653 778889999999999999999999988777 8889999999
Q ss_pred HHHHHHhCCCC
Q 027439 212 FDQAVKAAPDD 222 (223)
Q Consensus 212 fekAL~l~Pdn 222 (223)
++++++.+|+|
T Consensus 165 ~~~~I~~d~~N 175 (320)
T PLN02789 165 CHQLLEEDVRN 175 (320)
T ss_pred HHHHHHHCCCc
Confidence 99999998876
No 59
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.69 E-value=1.1e-07 Score=80.49 Aligned_cols=96 Identities=14% Similarity=0.016 Sum_probs=79.5
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH-------hCCHHHHHHHHHHHHHhCCCCHHHH----
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPL---LLSNYARFLKEA-------RGDLLKAEEYCARAILMSPNDGNVL---- 191 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~---~l~nlA~~l~~~-------~gdyeeA~~~~ekAL~ldP~d~~~l---- 191 (223)
|.+|...+++++|+..|+++++.+|+++. ++..+|.+++.. .+++++|++.|++++..+|++..++
T Consensus 77 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 156 (235)
T TIGR03302 77 AYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK 156 (235)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 35667788999999999999999998876 688888766642 1689999999999999999987553
Q ss_pred -------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 192 -------------SMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 192 -------------~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
..+|.+++. .|++++|+..|+++++..|++
T Consensus 157 ~~~~~~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~ 199 (235)
T TIGR03302 157 RMDYLRNRLAGKELYVARFYLK-RGAYVAAINRFETVVENYPDT 199 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCC
Confidence 245666666 999999999999999998763
No 60
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.68 E-value=1.2e-07 Score=85.55 Aligned_cols=93 Identities=16% Similarity=0.150 Sum_probs=69.8
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPRNP-----LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS 201 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~-----~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~ 201 (223)
.+|...+++++|+++|+++++.+|.+. .++..+|..+. .++++++|+.+|+++++.+|++..++..++.++..
T Consensus 149 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 226 (389)
T PRK11788 149 EIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL-ARGDLDAARALLKKALAADPQCVRASILLGDLALA- 226 (389)
T ss_pred HHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH-
Confidence 345556788888888888887777653 24556665444 47888888888888888888888888888877766
Q ss_pred cCCHHHHHHHHHHHHHhCCC
Q 027439 202 HKDASRAESYFDQAVKAAPD 221 (223)
Q Consensus 202 ~G~~eeAi~~fekAL~l~Pd 221 (223)
.|++++|+.+|+++++.+|+
T Consensus 227 ~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 227 QGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred CCCHHHHHHHHHHHHHHChh
Confidence 88888888888888877765
No 61
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=3.7e-08 Score=93.02 Aligned_cols=95 Identities=17% Similarity=0.215 Sum_probs=73.2
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~ 204 (223)
=|+.+.-.++|++|++-|+++++++|.|+..+.+++..+| +++++++++..|+.+++..|+-+.++..+|.++.. +++
T Consensus 400 RgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Y-r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD-qqq 477 (606)
T KOG0547|consen 400 RGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALY-RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD-QQQ 477 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh-HHh
Confidence 3444455577888888888888888888888888885556 57788888888888888888888888888877777 788
Q ss_pred HHHHHHHHHHHHHhCCC
Q 027439 205 ASRAESYFDQAVKAAPD 221 (223)
Q Consensus 205 ~eeAi~~fekAL~l~Pd 221 (223)
|++|+++|++|+.+.|.
T Consensus 478 Fd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 478 FDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 88888888888887765
No 62
>PLN02789 farnesyltranstransferase
Probab=98.68 E-value=1.4e-07 Score=85.56 Aligned_cols=91 Identities=9% Similarity=0.068 Sum_probs=81.1
Q ss_pred CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH--HH
Q 027439 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG-DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA--SR 207 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~g-dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~--ee 207 (223)
..+.+++|+..+.++|+++|++..+|..++.++.. ++ ++++|+.+++++++.+|++..+|...+.++.. .++. ++
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~-L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~-l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEA-LDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK-LGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHH-cchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH-cCchhhHH
Confidence 34678999999999999999999999999977774 66 68999999999999999999999999988766 6763 78
Q ss_pred HHHHHHHHHHhCCCCC
Q 027439 208 AESYFDQAVKAAPDDW 223 (223)
Q Consensus 208 Ai~~fekAL~l~Pdn~ 223 (223)
++.+++++++.+|+|+
T Consensus 127 el~~~~kal~~dpkNy 142 (320)
T PLN02789 127 ELEFTRKILSLDAKNY 142 (320)
T ss_pred HHHHHHHHHHhCcccH
Confidence 9999999999999874
No 63
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.67 E-value=9.1e-08 Score=89.97 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=59.5
Q ss_pred HhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439 147 QADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV---LSMYGDLIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 147 eldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~---l~~lA~ll~~~~G~~eeAi~~fekAL~l 218 (223)
..+|+++..++|+|..|+ .+++|++|+..|++||+++|++..+ |+++|.++.. +|++++|+.+|++|+++
T Consensus 69 ~~dP~~a~a~~NLG~AL~-~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LGr~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLF-SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-REEGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 368999999999997777 4899999999999999999998854 8889966555 89999999999999887
No 64
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=1.5e-07 Score=80.71 Aligned_cols=94 Identities=19% Similarity=0.213 Sum_probs=82.1
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPRN-----PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS 201 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~n-----~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~ 201 (223)
.-.+.+|+|++|..-|.+||++.|.. ...|.|.|.++. +++..+.|+..|.+||+++|.+..++.+.|.+|-+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~i-Kl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek- 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALI-KLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK- 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHH-HhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh-
Confidence 34566789999999999999999976 356788884444 68999999999999999999999999999977666
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q 027439 202 HKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 202 ~G~~eeAi~~fekAL~l~Pdn 222 (223)
...|++|++-|+++++.+|.+
T Consensus 181 ~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcch
Confidence 899999999999999999964
No 65
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.66 E-value=1.2e-07 Score=66.31 Aligned_cols=57 Identities=23% Similarity=0.295 Sum_probs=53.9
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 165 EARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 165 ~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
..+++|++|++++++++.++|+++..+..+|.+++. .|++++|+..|+++++..|++
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELDPDDPELWLQRARCLFQ-LGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHHCCCc
Confidence 368999999999999999999999999999988888 999999999999999999975
No 66
>PRK15331 chaperone protein SicA; Provisional
Probab=98.66 E-value=1.2e-07 Score=78.41 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=78.2
Q ss_pred CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 027439 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES 210 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~ 210 (223)
..|++++|+.+|+-+...+|.|..+|..||. +++.+++|++|+..|..|..++++||...+..|.+++. .|+.+.|+.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa-~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~-l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAA-VCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL-MRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH-hCCHHHHHH
Confidence 3589999999999999999999999999995 55568999999999999999999999999999977666 999999999
Q ss_pred HHHHHHH
Q 027439 211 YFDQAVK 217 (223)
Q Consensus 211 ~fekAL~ 217 (223)
.|+.++.
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 9999987
No 67
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.66 E-value=1.5e-07 Score=93.70 Aligned_cols=91 Identities=24% Similarity=0.427 Sum_probs=84.5
Q ss_pred CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 027439 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES 210 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~ 210 (223)
..|++++|...+.++|+++|.++.+|..+|.++- .+|+.+++..++-.|--++|.|...|..++...-. +|++.+|+-
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyE-qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~-~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYE-QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ-LGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-cccHHHHHH
Confidence 3499999999999999999999999999995554 68999999999999999999999999999977666 999999999
Q ss_pred HHHHHHHhCCCCC
Q 027439 211 YFDQAVKAAPDDW 223 (223)
Q Consensus 211 ~fekAL~l~Pdn~ 223 (223)
+|.||++.+|.||
T Consensus 229 cy~rAI~~~p~n~ 241 (895)
T KOG2076|consen 229 CYSRAIQANPSNW 241 (895)
T ss_pred HHHHHHhcCCcch
Confidence 9999999999997
No 68
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.64 E-value=2e-07 Score=78.16 Aligned_cols=87 Identities=20% Similarity=0.235 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---
Q 027439 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG----------DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS--- 201 (223)
Q Consensus 135 ~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~g----------dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~--- 201 (223)
|+.|.+.++..+..||.+++.+++.|-+|.+ +. -+++|+.=|++||.++|+..+++..+|.++...
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLE-LAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLE-LAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH-HHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHH-HHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 6889999999999999999999999988764 32 357888889999999999999999999886441
Q ss_pred -------cCCHHHHHHHHHHHHHhCCCC
Q 027439 202 -------HKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 202 -------~G~~eeAi~~fekAL~l~Pdn 222 (223)
...|++|..+|++|+..+|+|
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 123788999999999999986
No 69
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.2e-07 Score=90.08 Aligned_cols=92 Identities=16% Similarity=0.188 Sum_probs=85.2
Q ss_pred ccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439 129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208 (223)
Q Consensus 129 Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA 208 (223)
..+.+||+.|+.+|.++|.++|.|...+.|...++. .+++|++|..--.+.++++|+=+..|...|..++- +|+|++|
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a-~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~-lg~~~eA 89 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYA-SLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG-LGDYEEA 89 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHH-HHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh-cccHHHH
Confidence 356789999999999999999999999999985555 58999999999999999999999999999988888 9999999
Q ss_pred HHHHHHHHHhCCCC
Q 027439 209 ESYFDQAVKAAPDD 222 (223)
Q Consensus 209 i~~fekAL~l~Pdn 222 (223)
+..|.+.|+.+|+|
T Consensus 90 ~~ay~~GL~~d~~n 103 (539)
T KOG0548|consen 90 ILAYSEGLEKDPSN 103 (539)
T ss_pred HHHHHHHhhcCCch
Confidence 99999999999987
No 70
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=1.1e-07 Score=90.01 Aligned_cols=84 Identities=24% Similarity=0.197 Sum_probs=75.0
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e 206 (223)
.-++.++.|++|++||.+||++.|+.+.++.|++ ++|...|++++.++.|.+|++++|+...++++.|.++-. +|++.
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNra-AcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~-lg~~~ 200 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRA-ACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ-LGKFD 200 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHH-HHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh-hccHH
Confidence 3345568999999999999999999999999999 666679999999999999999999999999999977666 99999
Q ss_pred HHHHHH
Q 027439 207 RAESYF 212 (223)
Q Consensus 207 eAi~~f 212 (223)
+|+.-.
T Consensus 201 eal~D~ 206 (606)
T KOG0547|consen 201 EALFDV 206 (606)
T ss_pred HHHHhh
Confidence 997544
No 71
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2e-07 Score=87.73 Aligned_cols=93 Identities=14% Similarity=0.164 Sum_probs=84.3
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~ 204 (223)
.||-|....+...|+..|++|++++|.+-.+|..+|..+- ..+-..=|+.+|++|++..|+|..+|..+|.++-+ .++
T Consensus 370 mGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe-im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k-l~~ 447 (559)
T KOG1155|consen 370 MGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE-IMKMHFYALYYFQKALELKPNDSRLWVALGECYEK-LNR 447 (559)
T ss_pred hhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH-HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-hcc
Confidence 3567777889999999999999999999999999997776 47889999999999999999999999999987766 999
Q ss_pred HHHHHHHHHHHHHhC
Q 027439 205 ASRAESYFDQAVKAA 219 (223)
Q Consensus 205 ~eeAi~~fekAL~l~ 219 (223)
.++|+..|.+|+..+
T Consensus 448 ~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 448 LEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999998764
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.60 E-value=2.3e-07 Score=82.79 Aligned_cols=92 Identities=8% Similarity=0.025 Sum_probs=79.0
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHc
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN----VLSMYGDLIWQSH 202 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~----~l~~lA~ll~~~~ 202 (223)
.++...|++++|+..++++++++|+++.++..+|.+++. .+++++|+.++++++...|.++. .+..++.++.. .
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~-~ 199 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE-R 199 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH-C
Confidence 456678999999999999999999999999999987775 89999999999999999875443 34568877666 9
Q ss_pred CCHHHHHHHHHHHHHhCC
Q 027439 203 KDASRAESYFDQAVKAAP 220 (223)
Q Consensus 203 G~~eeAi~~fekAL~l~P 220 (223)
|++++|+..|++++...|
T Consensus 200 G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 200 GDYEAALAIYDTHIAPSA 217 (355)
T ss_pred CCHHHHHHHHHHHhcccc
Confidence 999999999999976655
No 73
>PRK11906 transcriptional regulator; Provisional
Probab=98.59 E-value=4e-07 Score=85.84 Aligned_cols=87 Identities=8% Similarity=0.051 Sum_probs=81.2
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF 212 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~f 212 (223)
.+..+|..+.+++++++|.|+.++..+|..+.. .++++.|...|++|+.++|+.+.+++..|++++. .|+.++|++.+
T Consensus 318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~-~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~-~G~~~~a~~~i 395 (458)
T PRK11906 318 LAAQKALELLDYVSDITTVDGKILAIMGLITGL-SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH-NEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 477899999999999999999999999966664 6889999999999999999999999999998888 99999999999
Q ss_pred HHHHHhCCC
Q 027439 213 DQAVKAAPD 221 (223)
Q Consensus 213 ekAL~l~Pd 221 (223)
+++++++|.
T Consensus 396 ~~alrLsP~ 404 (458)
T PRK11906 396 DKSLQLEPR 404 (458)
T ss_pred HHHhccCch
Confidence 999999984
No 74
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.57 E-value=9.4e-08 Score=65.94 Aligned_cols=56 Identities=20% Similarity=0.339 Sum_probs=52.0
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 166 ~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
..++|++|+++|++++..+|++..++..++.+++. .|++++|...+++++..+|++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGGGTTH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCH
Confidence 47999999999999999999999999999999888 999999999999999998873
No 75
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=3.2e-07 Score=87.82 Aligned_cols=96 Identities=20% Similarity=0.244 Sum_probs=80.7
Q ss_pred ccccccCCCChHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQA----DPR---NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL 197 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLel----dP~---n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l 197 (223)
-|-++...+.|.+|+.+|+.+++. .+. =...+.|+| ..+.+++.|++|+.+|++||.+.|.++.++...|.+
T Consensus 420 lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLG-H~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~i 498 (611)
T KOG1173|consen 420 LGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLG-HAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYI 498 (611)
T ss_pred hhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHH-HHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 334445567999999999999943 222 234589999 555579999999999999999999999999999977
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 198 IWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 198 l~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
+.. +|+++.|+++|.|||.++|+|
T Consensus 499 y~l-lgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 499 YHL-LGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHH-hcChHHHHHHHHHHHhcCCcc
Confidence 776 999999999999999999987
No 76
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.1e-06 Score=78.70 Aligned_cols=89 Identities=13% Similarity=0.146 Sum_probs=81.0
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH--HHHHH
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA--SRAES 210 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~--eeAi~ 210 (223)
...++.+.-++.-++.||+|+.-|..||.++. .++++..|+..|.+|+++.|++++++..||.+++...+.. .+|..
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym-~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYM-ALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 45888999999999999999999999997776 6899999999999999999999999999999988866644 48999
Q ss_pred HHHHHHHhCCCC
Q 027439 211 YFDQAVKAAPDD 222 (223)
Q Consensus 211 ~fekAL~l~Pdn 222 (223)
.|++++.++|+|
T Consensus 215 ll~~al~~D~~~ 226 (287)
T COG4235 215 LLRQALALDPAN 226 (287)
T ss_pred HHHHHHhcCCcc
Confidence 999999999986
No 77
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.51 E-value=7.1e-07 Score=73.41 Aligned_cols=76 Identities=14% Similarity=0.076 Sum_probs=67.8
Q ss_pred HHHhC-CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 145 MIQAD-PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 145 aLeld-P~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
...++ ++....++.+|..++ ..|++++|+.+|+-+..++|.+...|+.+|.++.. .|++++|+..|.+|+.++|+|
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly-~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-~g~~~~AI~aY~~A~~L~~dd 102 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLM-EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA-QKHWGEAIYAYGRAAQIKIDA 102 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCC
Confidence 34567 778888889996677 58999999999999999999999999999966666 999999999999999999987
No 78
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.51 E-value=5.9e-07 Score=71.64 Aligned_cols=86 Identities=17% Similarity=0.195 Sum_probs=69.7
Q ss_pred cccCCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439 128 WDPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (223)
Q Consensus 128 ~Y~~~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~ 204 (223)
.+...+++++|+..|++++...|++ ..+..++|.++. .+++|++|+..++. +.-.+-.+.++...|+++.. .|+
T Consensus 57 ~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~-~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~-~g~ 133 (145)
T PF09976_consen 57 AAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL-QQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLA-QGD 133 (145)
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHH-CCC
Confidence 3445689999999999999987665 457788897776 48999999999976 34455567888899998888 999
Q ss_pred HHHHHHHHHHHH
Q 027439 205 ASRAESYFDQAV 216 (223)
Q Consensus 205 ~eeAi~~fekAL 216 (223)
+++|+..|++||
T Consensus 134 ~~~A~~~y~~Al 145 (145)
T PF09976_consen 134 YDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHhC
Confidence 999999999885
No 79
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.49 E-value=5.2e-07 Score=78.88 Aligned_cols=95 Identities=19% Similarity=0.176 Sum_probs=73.0
Q ss_pred ccccccCCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQAD--PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH 202 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeld--P~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~ 202 (223)
...+|...++++++...++++.+.. +.++.+|..+|.++. +.|+.++|+++|++|++++|+|+.++..+++++.. .
T Consensus 116 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~ 193 (280)
T PF13429_consen 116 ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE-QLGDPDKALRDYRKALELDPDDPDARNALAWLLID-M 193 (280)
T ss_dssp --H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-T
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-C
Confidence 3445566789999999999988765 678999999996555 68999999999999999999999999999988877 8
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 027439 203 KDASRAESYFDQAVKAAPD 221 (223)
Q Consensus 203 G~~eeAi~~fekAL~l~Pd 221 (223)
|+++++...+++..+..|+
T Consensus 194 ~~~~~~~~~l~~~~~~~~~ 212 (280)
T PF13429_consen 194 GDYDEAREALKRLLKAAPD 212 (280)
T ss_dssp CHHHHHHHHHHHHHHH-HT
T ss_pred CChHHHHHHHHHHHHHCcC
Confidence 9999988888777766543
No 80
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=1.3e-06 Score=76.96 Aligned_cols=86 Identities=14% Similarity=0.211 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHH
Q 027439 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK--DASRAESYFD 213 (223)
Q Consensus 136 ~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G--~~eeAi~~fe 213 (223)
-+|++.+.+-++..+.+..+|..++..+. -.++|++|..++++.+.++|.++..+..+|+++|...| +++-|..+|.
T Consensus 137 l~aIk~ln~YL~~F~~D~EAW~eLaeiY~-~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~ 215 (289)
T KOG3060|consen 137 LEAIKELNEYLDKFMNDQEAWHELAEIYL-SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYE 215 (289)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444444445555566778988986665 47999999999999999999999999999999888333 6678999999
Q ss_pred HHHHhCCCC
Q 027439 214 QAVKAAPDD 222 (223)
Q Consensus 214 kAL~l~Pdn 222 (223)
++++++|.+
T Consensus 216 ~alkl~~~~ 224 (289)
T KOG3060|consen 216 RALKLNPKN 224 (289)
T ss_pred HHHHhChHh
Confidence 999999854
No 81
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=9.7e-07 Score=83.26 Aligned_cols=96 Identities=17% Similarity=0.150 Sum_probs=86.4
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~ 204 (223)
++-.+...+++++|+..++..++..|+|+.++...+..+. ..++.++|.+.+++++.++|+.+.+..++|.++++ .|+
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~-~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~-~g~ 389 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILL-EANKAKEAIERLKKALALDPNSPLLQLNLAQALLK-GGK 389 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh-cCC
Confidence 3444556689999999999999999999999988886666 58999999999999999999999999999999888 999
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 027439 205 ASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 205 ~eeAi~~fekAL~l~Pdn 222 (223)
+++|+.++++.+..+|+|
T Consensus 390 ~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 390 PQEAIRILNRYLFNDPED 407 (484)
T ss_pred hHHHHHHHHHHhhcCCCC
Confidence 999999999999998876
No 82
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.45 E-value=3.2e-06 Score=66.56 Aligned_cols=89 Identities=12% Similarity=0.096 Sum_probs=75.7
Q ss_pred cccCCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHH
Q 027439 128 WDPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN---DGNVLSMYGDLIWQS 201 (223)
Q Consensus 128 ~Y~~~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~---d~~~l~~lA~ll~~~ 201 (223)
.|...|+.++|+.+|+++++..... ..++.++|..+. .+|++++|+..+++++...|+ +..+...++.+++.
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~- 87 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN- 87 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH-
Confidence 3456789999999999999976554 567889997777 589999999999999999898 77788888877777
Q ss_pred cCCHHHHHHHHHHHHHh
Q 027439 202 HKDASRAESYFDQAVKA 218 (223)
Q Consensus 202 ~G~~eeAi~~fekAL~l 218 (223)
.|++++|+..+..++.-
T Consensus 88 ~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 88 LGRPKEALEWLLEALAE 104 (120)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887753
No 83
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.40 E-value=1.8e-06 Score=75.88 Aligned_cols=89 Identities=21% Similarity=0.239 Sum_probs=78.0
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 027439 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~ 211 (223)
.|+-+.+..+..+....+|.+..++..+++... ++|+|.+|+..+++|..++|+|+.+|..+|.++-+ .|+++.|...
T Consensus 79 ~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~-~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq-~Gr~~~Ar~a 156 (257)
T COG5010 79 RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQI-RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ-LGRFDEARRA 156 (257)
T ss_pred cccccchHHHHhhhhccCcccHHHHHHHHHHHH-HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH-ccChhHHHHH
Confidence 345667777788888888999888888997777 68999999999999999999999999999966555 9999999999
Q ss_pred HHHHHHhCCCC
Q 027439 212 FDQAVKAAPDD 222 (223)
Q Consensus 212 fekAL~l~Pdn 222 (223)
|.|++++.|++
T Consensus 157 y~qAl~L~~~~ 167 (257)
T COG5010 157 YRQALELAPNE 167 (257)
T ss_pred HHHHHHhccCC
Confidence 99999998874
No 84
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.4e-06 Score=76.31 Aligned_cols=90 Identities=19% Similarity=0.129 Sum_probs=80.9
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e 206 (223)
.-|+....|..|+.+|-++|.++|..+.++.|.|.++. +.++++.+..-|.+|++++||....++.++..... ...|+
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchl-k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~-s~~~~ 95 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHL-KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ-SKGYD 95 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHH-HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh-hcccc
Confidence 44555678999999999999999999999999996665 58999999999999999999999999999977777 89999
Q ss_pred HHHHHHHHHHHh
Q 027439 207 RAESYFDQAVKA 218 (223)
Q Consensus 207 eAi~~fekAL~l 218 (223)
+|+..+++|..+
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 999999999655
No 85
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=1.5e-06 Score=85.20 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=88.2
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~ 204 (223)
+|+....+++|.++.++++..++++|-....|+++| ++..+.++++.|+++|.+++.++|++..+|.+++.++.. .++
T Consensus 491 ~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G-~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~-~~~ 568 (777)
T KOG1128|consen 491 LALLILSNKDFSEADKHLERSLEINPLQLGTWFGLG-CAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR-LKK 568 (777)
T ss_pred hccccccchhHHHHHHHHHHHhhcCccchhHHHhcc-HHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH-Hhh
Confidence 445555678999999999999999999999999999 555579999999999999999999999999999987777 999
Q ss_pred HHHHHHHHHHHHHhCCCCC
Q 027439 205 ASRAESYFDQAVKAAPDDW 223 (223)
Q Consensus 205 ~eeAi~~fekAL~l~Pdn~ 223 (223)
..+|...+++|++.+-++|
T Consensus 569 k~ra~~~l~EAlKcn~~~w 587 (777)
T KOG1128|consen 569 KKRAFRKLKEALKCNYQHW 587 (777)
T ss_pred hHHHHHHHHHHhhcCCCCC
Confidence 9999999999999998877
No 86
>PRK11906 transcriptional regulator; Provisional
Probab=98.38 E-value=2.3e-06 Score=80.72 Aligned_cols=89 Identities=15% Similarity=0.069 Sum_probs=78.3
Q ss_pred CChHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 027439 133 HGNNSTDLYYQKMI---QADPRNPLLLSNYARFLKEA--------RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS 201 (223)
Q Consensus 133 gd~~eA~~~y~~aL---eldP~n~~~l~nlA~~l~~~--------~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~ 201 (223)
.+.++|..+|.+++ +++|+.+.++..+|.++..+ ..+..+|.++.++|++++|+|+.++..+|.+.+.
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~- 350 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL- 350 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-
Confidence 35578999999999 99999999999999665543 2346789999999999999999999999988888
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q 027439 202 HKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 202 ~G~~eeAi~~fekAL~l~Pdn 222 (223)
.++++.|+..|++|+.++||.
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~ 371 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDI 371 (458)
T ss_pred hcchhhHHHHHHHHhhcCCcc
Confidence 888999999999999999984
No 87
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.38 E-value=1.5e-06 Score=85.63 Aligned_cols=95 Identities=16% Similarity=0.197 Sum_probs=85.1
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEE--YCARAILMSPNDGNVLSMYGDLIWQSHK 203 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~--~~ekAL~ldP~d~~~l~~lA~ll~~~~G 203 (223)
|.++...+.+++|.++|..++.+||+++.+...+|.++. +.|+-.-|+. ++..|+++||.++.+|+.+|.++-. .|
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll-e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~-~G 768 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL-ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK-LG 768 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cc
Confidence 456667789999999999999999999999999997776 5788777777 9999999999999999999987666 99
Q ss_pred CHHHHHHHHHHHHHhCCCC
Q 027439 204 DASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 204 ~~eeAi~~fekAL~l~Pdn 222 (223)
+.++|.+.|+-|+++++.+
T Consensus 769 d~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 769 DSKQAAECFQAALQLEESN 787 (799)
T ss_pred chHHHHHHHHHHHhhccCC
Confidence 9999999999999997653
No 88
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.36 E-value=3.2e-06 Score=57.61 Aligned_cols=66 Identities=20% Similarity=0.331 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 155 LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 155 ~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
++.++|..+. ..+++++|+..+++++...|++..++..++.++.. .+++++|+.+|++++...|.+
T Consensus 2 ~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~ 67 (100)
T cd00189 2 ALLNLGNLYY-KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDN 67 (100)
T ss_pred HHHHHHHHHH-HHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcc
Confidence 4678886666 47999999999999999999999999999988877 899999999999999988865
No 89
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.35 E-value=4.3e-06 Score=77.59 Aligned_cols=83 Identities=16% Similarity=0.200 Sum_probs=55.9
Q ss_pred CChHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHhCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439 133 HGNNSTDLYYQKMIQADPRNP--LLLSNYARFLKEARGDLLKAEEYCA--RAILMSPNDGNVLSMYGDLIWQSHKDASRA 208 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~--~~l~nlA~~l~~~~gdyeeA~~~~e--kAL~ldP~d~~~l~~lA~ll~~~~G~~eeA 208 (223)
++.+.+++.++++++.+|+|+ .++..+|+.++ +.+++++|.++|+ ++++.+|++.. +..+|.+++. .|+.++|
T Consensus 313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~-~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~-~g~~~~A 389 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLM-KHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQ-AGDKAEA 389 (409)
T ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH-HcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHH-cCCHHHH
Confidence 355667777777777777777 66667775554 4677777777777 46666665444 4467766666 7777777
Q ss_pred HHHHHHHHHh
Q 027439 209 ESYFDQAVKA 218 (223)
Q Consensus 209 i~~fekAL~l 218 (223)
.++|++++..
T Consensus 390 ~~~~~~~l~~ 399 (409)
T TIGR00540 390 AAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHH
Confidence 7777776543
No 90
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.35 E-value=1.5e-06 Score=79.71 Aligned_cols=74 Identities=9% Similarity=-0.009 Sum_probs=65.9
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~ 200 (223)
+.+|...+++++|+.+++++++++|+++.++.++|.+++ .+++|++|+.+|+++++++|+++.+...++.+...
T Consensus 43 a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~-~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 43 AQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM-KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 456677899999999999999999999999999997666 58999999999999999999999998888866433
No 91
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.35 E-value=7.3e-07 Score=63.27 Aligned_cols=66 Identities=21% Similarity=0.348 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439 151 RNPLLLSNYARFLKEARGDLLKAEEYCARAILMS----PN---DGNVLSMYGDLIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 151 ~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld----P~---d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l 218 (223)
+-+.++.++|.++. .+++|++|+.+|++++.+. ++ -..++..+|.++.. .|++++|+.+|++++++
T Consensus 3 ~~a~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYR-ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 34677899996666 6999999999999999762 22 25668888877777 99999999999999976
No 92
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.35 E-value=2.3e-06 Score=86.54 Aligned_cols=94 Identities=18% Similarity=0.088 Sum_probs=69.9
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA 205 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ 205 (223)
+..|...+++++|+++|+++++.+|+|+.++..++..+. ..+++++|++.+++++..+|++... ..++.++.. .+++
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~-~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~-~~~~ 185 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQA-DAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA-TDRN 185 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh-cchH
Confidence 345666788888888888888888888888877764444 4688888888888888888875554 444544444 5677
Q ss_pred HHHHHHHHHHHHhCCCC
Q 027439 206 SRAESYFDQAVKAAPDD 222 (223)
Q Consensus 206 eeAi~~fekAL~l~Pdn 222 (223)
.+|+..|+++++.+|++
T Consensus 186 ~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 186 YDALQASSEAVRLAPTS 202 (822)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 67888888888888875
No 93
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.34 E-value=2.1e-06 Score=79.70 Aligned_cols=95 Identities=13% Similarity=0.052 Sum_probs=76.9
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHcC
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLL-SNYARFLKEARGDLLKAEEYCARAILMSPNDG--NVLSMYGDLIWQSHK 203 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l-~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~--~~l~~lA~ll~~~~G 203 (223)
..+...|++++|++.++++++..|++.... ..+-.+.....++.+++++.++++++.+|+|+ .++..+|++++. .|
T Consensus 271 ~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~-~~ 349 (409)
T TIGR00540 271 EHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK-HG 349 (409)
T ss_pred HHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH-cc
Confidence 455667899999999999999999998531 01111222224788999999999999999999 999999999988 99
Q ss_pred CHHHHHHHHH--HHHHhCCCC
Q 027439 204 DASRAESYFD--QAVKAAPDD 222 (223)
Q Consensus 204 ~~eeAi~~fe--kAL~l~Pdn 222 (223)
++++|+++|+ ++++..|++
T Consensus 350 ~~~~A~~~le~a~a~~~~p~~ 370 (409)
T TIGR00540 350 EFIEAADAFKNVAACKEQLDA 370 (409)
T ss_pred cHHHHHHHHHHhHHhhcCCCH
Confidence 9999999999 577778864
No 94
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.34 E-value=3.1e-06 Score=85.51 Aligned_cols=88 Identities=13% Similarity=0.095 Sum_probs=51.0
Q ss_pred CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHHcCCHHHH
Q 027439 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMY--GDLIWQSHKDASRA 208 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~l--A~ll~~~~G~~eeA 208 (223)
+.|+++.|+..|+++++.+|.++.....++.++. ..|++++|+.+|++++ +|.+...+..+ |.++.. .|++++|
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~-~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~-~gdyd~A 121 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAG-WAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRN-EKRWDQA 121 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHH-HcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHH-cCCHHHH
Confidence 4567778888888888888877533225543333 3566666666666666 33333333333 433333 5666666
Q ss_pred HHHHHHHHHhCCCC
Q 027439 209 ESYFDQAVKAAPDD 222 (223)
Q Consensus 209 i~~fekAL~l~Pdn 222 (223)
++.|+++++.+|+|
T Consensus 122 iely~kaL~~dP~n 135 (822)
T PRK14574 122 LALWQSSLKKDPTN 135 (822)
T ss_pred HHHHHHHHhhCCCC
Confidence 66666666666654
No 95
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.34 E-value=4.5e-06 Score=67.84 Aligned_cols=90 Identities=11% Similarity=0.093 Sum_probs=73.9
Q ss_pred CCCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCH
Q 027439 131 NNHGNNSTDLYYQKMIQADPRN--PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDA 205 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLeldP~n--~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d---~~~l~~lA~ll~~~~G~~ 205 (223)
...+|..+...+.+.++.++.+ ..++.++|.++. .++++++|+.+|++|+.+.|+. +.++..+|.++.. .|++
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g~~ 88 (168)
T CHL00033 11 IDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQ-SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NGEH 88 (168)
T ss_pred cccccccchhhhhHhccCCchhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cCCH
Confidence 3456788888887777777766 667789995555 5899999999999999997763 4589999977777 9999
Q ss_pred HHHHHHHHHHHHhCCCC
Q 027439 206 SRAESYFDQAVKAAPDD 222 (223)
Q Consensus 206 eeAi~~fekAL~l~Pdn 222 (223)
++|+.+|++++.++|++
T Consensus 89 ~eA~~~~~~Al~~~~~~ 105 (168)
T CHL00033 89 TKALEYYFQALERNPFL 105 (168)
T ss_pred HHHHHHHHHHHHhCcCc
Confidence 99999999999998863
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.32 E-value=1e-06 Score=80.71 Aligned_cols=91 Identities=19% Similarity=0.211 Sum_probs=84.2
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 027439 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE 209 (223)
Q Consensus 130 ~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi 209 (223)
...+++..|+..|..|++.||+|-.+++.+|..+. ..|+-..|+.-+.+.|++.|+..-+..-.|.++++ +|++++|+
T Consensus 49 la~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yL-AmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK-~Gele~A~ 126 (504)
T KOG0624|consen 49 LARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYL-AMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK-QGELEQAE 126 (504)
T ss_pred HHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh-cccHHHHH
Confidence 44578999999999999999999999999996666 58999999999999999999999999999988888 99999999
Q ss_pred HHHHHHHHhCCCC
Q 027439 210 SYFDQAVKAAPDD 222 (223)
Q Consensus 210 ~~fekAL~l~Pdn 222 (223)
.-|+++|+.+|++
T Consensus 127 ~DF~~vl~~~~s~ 139 (504)
T KOG0624|consen 127 ADFDQVLQHEPSN 139 (504)
T ss_pred HHHHHHHhcCCCc
Confidence 9999999999965
No 97
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.32 E-value=2.7e-06 Score=81.64 Aligned_cols=86 Identities=17% Similarity=0.239 Sum_probs=76.7
Q ss_pred ChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 027439 134 GNNSTDLYYQKMIQADP--RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP--~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~ 211 (223)
.+..-.++|-++...+| .++++...|| ++|...++|++|+.+|+.||..+|+|...|..||..+-. ..+.++|+..
T Consensus 409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG-VLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIsA 486 (579)
T KOG1125|consen 409 HLAHIQELFLEAARQLPTKIDPDVQSGLG-VLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAISA 486 (579)
T ss_pred HHHHHHHHHHHHHHhCCCCCChhHHhhhH-HHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHHH
Confidence 56777888999999999 7999999999 555568999999999999999999999999999966555 7789999999
Q ss_pred HHHHHHhCCC
Q 027439 212 FDQAVKAAPD 221 (223)
Q Consensus 212 fekAL~l~Pd 221 (223)
|+||+++.|.
T Consensus 487 Y~rALqLqP~ 496 (579)
T KOG1125|consen 487 YNRALQLQPG 496 (579)
T ss_pred HHHHHhcCCC
Confidence 9999999985
No 98
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=1.2e-06 Score=78.47 Aligned_cols=77 Identities=12% Similarity=0.018 Sum_probs=66.4
Q ss_pred cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (223)
Q Consensus 128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e 206 (223)
.|.+.|.|+.|++-++.+|.+||....+|.+||.+++ .+|+|++|++.|++||+++|++..+..++-.+-.+ .++..
T Consensus 124 Ay~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~-~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~-l~e~~ 200 (304)
T KOG0553|consen 124 AYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL-ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK-LNEPK 200 (304)
T ss_pred HHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH-ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH-hcCCC
Confidence 4566799999999999999999999999999997777 58999999999999999999999888888855444 44433
No 99
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1.5e-06 Score=80.94 Aligned_cols=89 Identities=18% Similarity=0.153 Sum_probs=79.9
Q ss_pred cCCCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439 130 PNNHGNNSTDLYYQKMIQADPRN----PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA 205 (223)
Q Consensus 130 ~~~gd~~eA~~~y~~aLeldP~n----~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ 205 (223)
.++|.|..|.++|.++|.++|.| +..|.|+|.+.. ++++..+|+.-|..|+.+||....++...|.++.. ++++
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~-rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~-le~~ 337 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI-RLGRLREAISDCNEALKIDSSYIKALLRRANCHLA-LEKW 337 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc-ccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH-HHHH
Confidence 35689999999999999999987 466888995555 79999999999999999999999999999988877 9999
Q ss_pred HHHHHHHHHHHHhCC
Q 027439 206 SRAESYFDQAVKAAP 220 (223)
Q Consensus 206 eeAi~~fekAL~l~P 220 (223)
++|++.|++|.+...
T Consensus 338 e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 338 EEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999999998753
No 100
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=3.7e-06 Score=77.91 Aligned_cols=90 Identities=12% Similarity=0.094 Sum_probs=77.1
Q ss_pred cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 027439 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (223)
Q Consensus 128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee 207 (223)
+|.+.++|.+|+..++++|+++|+|..++++.|.++.. .++|+.|+..|++|++++|+|..+..-+..+..+.....++
T Consensus 266 c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~-~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 266 CYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLA-LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK 344 (397)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh-hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 44556899999999999999999999999999988885 89999999999999999999999998888665553344456
Q ss_pred HHHHHHHHHHh
Q 027439 208 AESYFDQAVKA 218 (223)
Q Consensus 208 Ai~~fekAL~l 218 (223)
..++|.+++..
T Consensus 345 ekk~y~~mF~k 355 (397)
T KOG0543|consen 345 EKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhc
Confidence 68888888765
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.28 E-value=6e-06 Score=73.68 Aligned_cols=86 Identities=15% Similarity=0.115 Sum_probs=71.1
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027439 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFD 213 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fe 213 (223)
....+.+.++.....+|....++..+|.++. .+|++++|+..++++++++|+++.++..++.+++. .|++++|+.+|+
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~ 172 (355)
T cd05804 95 MRDHVARVLPLWAPENPDYWYLLGMLAFGLE-EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFME 172 (355)
T ss_pred CchhHHHHHhccCcCCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 3344555555555667777777888885555 58999999999999999999999999999999888 999999999999
Q ss_pred HHHHhCCC
Q 027439 214 QAVKAAPD 221 (223)
Q Consensus 214 kAL~l~Pd 221 (223)
+++...|.
T Consensus 173 ~~l~~~~~ 180 (355)
T cd05804 173 SWRDTWDC 180 (355)
T ss_pred hhhhccCC
Confidence 99988763
No 102
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.27 E-value=7.6e-06 Score=78.87 Aligned_cols=85 Identities=13% Similarity=0.068 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 027439 135 NNSTDLYYQKMIQA--DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF 212 (223)
Q Consensus 135 ~~eA~~~y~~aLel--dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~f 212 (223)
..++....++++.+ +|.++.++..+| ......+++++|+.++++|+.++| +..+|..+|.++.. .|++++|++.|
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala-~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~-~G~~~eA~~~~ 476 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILA-VQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL-KGDNRLAADAY 476 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 34555666666653 788888888888 444458999999999999999999 58899999988877 99999999999
Q ss_pred HHHHHhCCCC
Q 027439 213 DQAVKAAPDD 222 (223)
Q Consensus 213 ekAL~l~Pdn 222 (223)
++|+.++|.+
T Consensus 477 ~~A~~L~P~~ 486 (517)
T PRK10153 477 STAFNLRPGE 486 (517)
T ss_pred HHHHhcCCCC
Confidence 9999999973
No 103
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.27 E-value=1.1e-05 Score=74.70 Aligned_cols=84 Identities=14% Similarity=0.194 Sum_probs=73.5
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF 212 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~f 212 (223)
++++++++.+++.++.+|+|+..+..+|..+. +.+++++|.++|+++++.+|++.. +..++.++.. +|+.++|..+|
T Consensus 308 ~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~-~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~-~g~~~~A~~~~ 384 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLM-KHGEWQEASLAFRAALKQRPDAYD-YAWLADALDR-LHKPEEAAAMR 384 (398)
T ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHH-cCCHHHHHHHH
Confidence 58899999999999999999999999997777 589999999999999999997655 4468877777 99999999999
Q ss_pred HHHHHhC
Q 027439 213 DQAVKAA 219 (223)
Q Consensus 213 ekAL~l~ 219 (223)
++++.+-
T Consensus 385 ~~~l~~~ 391 (398)
T PRK10747 385 RDGLMLT 391 (398)
T ss_pred HHHHhhh
Confidence 9998753
No 104
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.22 E-value=1.4e-05 Score=59.50 Aligned_cols=68 Identities=18% Similarity=0.151 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 153 ~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d---~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
+.++...|..+. .++++++|+..|++++..+|++ +.+++.+|.+++. .+++++|+.+|++++...|++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 2 EEAYYDAALLVL-KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred cHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHCCCC
Confidence 356678886666 5899999999999999999987 5788899988888 999999999999999998874
No 105
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.22 E-value=8.1e-06 Score=81.59 Aligned_cols=94 Identities=20% Similarity=0.219 Sum_probs=87.3
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~ 204 (223)
-|.+|+..||.+++..+.-.|-.++|.+...|..++ -+...++.+.+|.-+|.|||.++|.+.......+.++.+ .|+
T Consensus 179 L~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~la-dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~-~G~ 256 (895)
T KOG2076|consen 179 LGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLA-DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQK-TGD 256 (895)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHH-HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-hCh
Confidence 688899999999999999999999999999999999 455568999999999999999999999999999976666 999
Q ss_pred HHHHHHHHHHHHHhCC
Q 027439 205 ASRAESYFDQAVKAAP 220 (223)
Q Consensus 205 ~eeAi~~fekAL~l~P 220 (223)
+.+|.+.|++++++.|
T Consensus 257 ~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 257 LKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHHHHHHhhCC
Confidence 9999999999999988
No 106
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=8.7e-06 Score=76.94 Aligned_cols=85 Identities=20% Similarity=0.171 Sum_probs=71.3
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA 205 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ 205 (223)
+.++...++.++|++.+++++.++|+...++.+||..|.. .|++.+|+.++.+.+..+|+|+..|..+|..+-. +|+.
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~-~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~-~g~~ 424 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLK-GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE-LGNR 424 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH-hCch
Confidence 3445566899999999999999999999999999988884 8999999999999999999999999999987544 4444
Q ss_pred HHHHHHH
Q 027439 206 SRAESYF 212 (223)
Q Consensus 206 eeAi~~f 212 (223)
.+|...+
T Consensus 425 ~~a~~A~ 431 (484)
T COG4783 425 AEALLAR 431 (484)
T ss_pred HHHHHHH
Confidence 4444333
No 107
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.21 E-value=8.3e-06 Score=78.59 Aligned_cols=88 Identities=7% Similarity=0.001 Sum_probs=71.4
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh-------CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcC
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR-------GDLLKAEEYCARAILM--SPNDGNVLSMYGDLIWQSHK 203 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~-------gdyeeA~~~~ekAL~l--dP~d~~~l~~lA~ll~~~~G 203 (223)
+++.+|+.+|+++++++|+++.++..++.++..+. .+..+|.+..++++.+ +|.++.++..+|.+... .|
T Consensus 356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~-~g 434 (517)
T PRK10153 356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALV-KG 434 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh-cC
Confidence 45779999999999999999999998885554321 1345677777787774 78889999989866665 89
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 027439 204 DASRAESYFDQAVKAAPD 221 (223)
Q Consensus 204 ~~eeAi~~fekAL~l~Pd 221 (223)
++++|..+|++|+.++|+
T Consensus 435 ~~~~A~~~l~rAl~L~ps 452 (517)
T PRK10153 435 KTDEAYQAINKAIDLEMS 452 (517)
T ss_pred CHHHHHHHHHHHHHcCCC
Confidence 999999999999999984
No 108
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=7.6e-06 Score=72.17 Aligned_cols=94 Identities=16% Similarity=0.198 Sum_probs=84.1
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e 206 (223)
-.++..+.+++|+++|+..++.||.|..++-.--.++. .+|+.-+|++.+..-++..++|.++|.-++++++. .++|+
T Consensus 94 m~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk-a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~-~~~f~ 171 (289)
T KOG3060|consen 94 MLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK-AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS-EGDFE 171 (289)
T ss_pred HHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-HhHHH
Confidence 34566789999999999999999999988876664555 58999999999999999999999999999999888 99999
Q ss_pred HHHHHHHHHHHhCCCC
Q 027439 207 RAESYFDQAVKAAPDD 222 (223)
Q Consensus 207 eAi~~fekAL~l~Pdn 222 (223)
+|...|++.+-++|-+
T Consensus 172 kA~fClEE~ll~~P~n 187 (289)
T KOG3060|consen 172 KAAFCLEELLLIQPFN 187 (289)
T ss_pred HHHHHHHHHHHcCCCc
Confidence 9999999999998864
No 109
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.18 E-value=2e-05 Score=69.82 Aligned_cols=91 Identities=20% Similarity=0.207 Sum_probs=81.2
Q ss_pred cCCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcC
Q 027439 130 PNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHK 203 (223)
Q Consensus 130 ~~~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d---~~~l~~lA~ll~~~~G 203 (223)
...++|..|+..|+.-++..|+. +.+++.||..+| .+++|+.|...|..++.-.|+. ++.++.+|.++.. ++
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y-~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~-l~ 229 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLY-AQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR-LG 229 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHH-hcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH-hc
Confidence 34589999999999999999986 578899998888 5899999999999999988765 5789999988888 99
Q ss_pred CHHHHHHHHHHHHHhCCCC
Q 027439 204 DASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 204 ~~eeAi~~fekAL~l~Pdn 222 (223)
+.++|...|+++++..|+.
T Consensus 230 ~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 230 NTDEACATLQQVIKRYPGT 248 (262)
T ss_pred CHHHHHHHHHHHHHHCCCC
Confidence 9999999999999998863
No 110
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.18 E-value=1.9e-05 Score=64.53 Aligned_cols=71 Identities=17% Similarity=0.271 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 150 PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 150 P~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d---~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
+.++.++.++|..+. ..+++++|+.+|++++.+.|+. ..++..+|.++.. .|++++|+.+|++++...|++
T Consensus 32 ~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 32 AKEAFVYYRDGMSAQ-ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred hhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCccc
Confidence 355677899996555 5899999999999999987764 4689999987777 999999999999999998875
No 111
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.2e-05 Score=75.29 Aligned_cols=85 Identities=14% Similarity=0.328 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 027439 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQ 214 (223)
Q Consensus 135 ~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fek 214 (223)
.++|.++|+++++++|....+...+|..+. +.|+++.++.++++++...|+ ...+..+|+++.. ...+++|+.+|.+
T Consensus 420 rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~-~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A-~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 420 REKAKKFAEKSLKINPIYTPAVNLIAELCQ-VEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRA-QNEPQKAMEYYYK 496 (564)
T ss_pred HHHHHHHHHhhhccCCccHHHHHHHHHHHH-hhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHH-hhhHHHHHHHHHH
Confidence 489999999999999999999999995555 789999999999999999884 5678899998888 8999999999999
Q ss_pred HHHhCCCC
Q 027439 215 AVKAAPDD 222 (223)
Q Consensus 215 AL~l~Pdn 222 (223)
||.++|+|
T Consensus 497 ALr~dP~~ 504 (564)
T KOG1174|consen 497 ALRQDPKS 504 (564)
T ss_pred HHhcCccc
Confidence 99999986
No 112
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.16 E-value=2.3e-05 Score=72.60 Aligned_cols=88 Identities=13% Similarity=0.110 Sum_probs=73.6
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNY-ARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208 (223)
Q Consensus 130 ~~~gd~~eA~~~y~~aLeldP~n~~~l~nl-A~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA 208 (223)
...|+++.|..+|+++.+.+|++..+...+ +. ++...+++++|...++++++.+|+++.++..++.++.. .|++++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~-l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~-~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVR-IQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR-TGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH-HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHhHHHH
Confidence 456899999999999999999986544333 54 44468999999999999999999999999999988777 8999999
Q ss_pred HHHHHHHHHhC
Q 027439 209 ESYFDQAVKAA 219 (223)
Q Consensus 209 i~~fekAL~l~ 219 (223)
++.+.++.+..
T Consensus 207 ~~~l~~l~k~~ 217 (398)
T PRK10747 207 LDILPSMAKAH 217 (398)
T ss_pred HHHHHHHHHcC
Confidence 98888887654
No 113
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.16 E-value=1.4e-05 Score=74.79 Aligned_cols=88 Identities=17% Similarity=0.231 Sum_probs=60.0
Q ss_pred CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 027439 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES 210 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~ 210 (223)
..+.+++|+..|++..+.+|.. ...+|+++. ..++..+|++.+.+++..+|.+...+...|.++.. .++++.|+.
T Consensus 181 ~t~~~~~ai~lle~L~~~~pev---~~~LA~v~l-~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~lAL~ 255 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPEV---AVLLARVYL-LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYELALE 255 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCcH---HHHHHHHHH-hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHH
Confidence 3456777777777777777652 233554444 35666777777777777777777777777766666 777777777
Q ss_pred HHHHHHHhCCCCC
Q 027439 211 YFDQAVKAAPDDW 223 (223)
Q Consensus 211 ~fekAL~l~Pdn~ 223 (223)
..++|+.+.|++|
T Consensus 256 iAk~av~lsP~~f 268 (395)
T PF09295_consen 256 IAKKAVELSPSEF 268 (395)
T ss_pred HHHHHHHhCchhH
Confidence 7777777777664
No 114
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.15 E-value=3.9e-05 Score=62.23 Aligned_cols=90 Identities=19% Similarity=0.172 Sum_probs=75.5
Q ss_pred CCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHcCC
Q 027439 131 NNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN---VLSMYGDLIWQSHKD 204 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~---~l~~lA~ll~~~~G~ 204 (223)
..++|++|++.|+.+....|.. ..+...++.+++ ..++|++|+..+++.|+++|+++. +++..|...+. +..
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy-~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~-~~~ 99 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYY-KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE-QDE 99 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH-Hhh
Confidence 4589999999999999988876 467788897777 489999999999999999998864 56777755665 554
Q ss_pred ---------------HHHHHHHHHHHHHhCCCC
Q 027439 205 ---------------ASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 205 ---------------~eeAi~~fekAL~l~Pdn 222 (223)
..+|+..|++++..-|+.
T Consensus 100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 100 GSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred hHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 779999999999999974
No 115
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.12 E-value=1.1e-05 Score=73.35 Aligned_cols=93 Identities=11% Similarity=0.117 Sum_probs=74.2
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPRN-----PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS 201 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~n-----~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~ 201 (223)
.+|+...+|++|+..-++..++.+.+ +.++..||..+. ...++++|+..+.+|+..||+...+-..+|.+...
T Consensus 149 ~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~-~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~- 226 (389)
T COG2956 149 NIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL-ASSDVDRARELLKKALQADKKCVRASIILGRVELA- 226 (389)
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh-
Confidence 45666778888888888888887765 344556664444 35788889999999999999998888888988887
Q ss_pred cCCHHHHHHHHHHHHHhCCC
Q 027439 202 HKDASRAESYFDQAVKAAPD 221 (223)
Q Consensus 202 ~G~~eeAi~~fekAL~l~Pd 221 (223)
.|+|+.|++.++++++.||+
T Consensus 227 ~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 227 KGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred ccchHHHHHHHHHHHHhChH
Confidence 89999999999999888875
No 116
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=5.3e-06 Score=79.60 Aligned_cols=90 Identities=16% Similarity=0.295 Sum_probs=67.9
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CCC---HHHHHHHHHHHHHHcCC
Q 027439 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS----PND---GNVLSMYGDLIWQSHKD 204 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld----P~d---~~~l~~lA~ll~~~~G~ 204 (223)
.++++-|.++|.+|+.+.|.++.+++.+|-+.| ..+.|.+|+.+|+.+++.- +.- ...+.++|-++.+ ++.
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay-~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk-l~~ 470 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPSDPLVLHELGVVAY-TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK-LNK 470 (611)
T ss_pred hccHHHHHHHHHHHHhcCCCcchhhhhhhheee-hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH-Hhh
Confidence 467788888888888888888888888885555 4688888888888888322 211 1236677765555 888
Q ss_pred HHHHHHHHHHHHHhCCCCC
Q 027439 205 ASRAESYFDQAVKAAPDDW 223 (223)
Q Consensus 205 ~eeAi~~fekAL~l~Pdn~ 223 (223)
+++|+.+|+++|.+.|.||
T Consensus 471 ~~eAI~~~q~aL~l~~k~~ 489 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLSPKDA 489 (611)
T ss_pred HHHHHHHHHHHHHcCCCch
Confidence 9999999999999888875
No 117
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.11 E-value=6.1e-06 Score=77.81 Aligned_cols=59 Identities=14% Similarity=0.007 Sum_probs=51.4
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLL---LSNYARFLKEARGDLLKAEEYCARAILMS 184 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~---l~nlA~~l~~~~gdyeeA~~~~ekAL~ld 184 (223)
-|..|...++|++|+.+|+++++++|+++.+ |+|+| +++..+|++++|++++++|+++.
T Consensus 81 LG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLA-caya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 81 LGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKA-CCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhc
Confidence 3456677899999999999999999999854 99999 55557999999999999999984
No 118
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.07 E-value=5.3e-05 Score=66.17 Aligned_cols=91 Identities=20% Similarity=0.138 Sum_probs=72.5
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcC
Q 027439 130 PNNHGNNSTDLYYQKMIQADPRNPLLL---SNYARFLKEARGDLLKAEEYCARAILMSPNDG---NVLSMYGDLIWQSHK 203 (223)
Q Consensus 130 ~~~gd~~eA~~~y~~aLeldP~n~~~l---~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~---~~l~~lA~ll~~~~G 203 (223)
...++|++|++.|++++...|..+.+. .++|.+++ +.++|++|+..++++++.+|+++ .+++..|.+.+. .+
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy-~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~-~~ 120 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA-LD 120 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh-cc
Confidence 446899999999999999999987654 78897777 58999999999999999999875 456666644322 21
Q ss_pred ---------------C---HHHHHHHHHHHHHhCCCC
Q 027439 204 ---------------D---ASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 204 ---------------~---~eeAi~~fekAL~l~Pdn 222 (223)
| ..+|+..|++.++..|+.
T Consensus 121 ~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S 157 (243)
T PRK10866 121 DSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS 157 (243)
T ss_pred hhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC
Confidence 1 347889999999999874
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.07 E-value=1.1e-05 Score=81.98 Aligned_cols=82 Identities=13% Similarity=0.041 Sum_probs=64.2
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF 212 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~f 212 (223)
.++ .++++|-..+...+.+..++..+| .+|..++++++|...|+++++++|+|+.++.++|..+-. . ++++|+.++
T Consensus 97 ~~~-~~ve~~~~~i~~~~~~k~Al~~LA-~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKW-AIVEHICDKILLYGENKLALRTLA-EAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE-E-DKEKAITYL 172 (906)
T ss_pred cch-hHHHHHHHHHHhhhhhhHHHHHHH-HHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-h-hHHHHHHHH
Confidence 355 666666666666888888888888 444467888888888888888888888888888876666 5 888888888
Q ss_pred HHHHHh
Q 027439 213 DQAVKA 218 (223)
Q Consensus 213 ekAL~l 218 (223)
.+|++.
T Consensus 173 ~KAV~~ 178 (906)
T PRK14720 173 KKAIYR 178 (906)
T ss_pred HHHHHH
Confidence 888775
No 120
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.06 E-value=3.8e-05 Score=71.80 Aligned_cols=89 Identities=16% Similarity=0.110 Sum_probs=78.9
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~ 204 (223)
-+++|...++..+|+..++++++.+|.+...+...|.++.. +++++.|+++.++|+.+.|++...|..+|.+|.. .|+
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~-~~d 283 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYELALEIAKKAVELSPSEFETWYQLAECYIQ-LGD 283 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-cCC
Confidence 34444455788899999999999999999999999988884 7999999999999999999999999999988888 999
Q ss_pred HHHHHHHHHHH
Q 027439 205 ASRAESYFDQA 215 (223)
Q Consensus 205 ~eeAi~~fekA 215 (223)
++.|+..++-+
T Consensus 284 ~e~ALlaLNs~ 294 (395)
T PF09295_consen 284 FENALLALNSC 294 (395)
T ss_pred HHHHHHHHhcC
Confidence 99999877643
No 121
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.03 E-value=1.3e-05 Score=76.97 Aligned_cols=92 Identities=13% Similarity=0.159 Sum_probs=75.7
Q ss_pred ccccccCCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CCCH
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQA--------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--------PNDG 188 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLel--------dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld--------P~d~ 188 (223)
-+..|...++|+.|+..++++++. .|.-.....++|.++. .+++|.+|+.+|++|+.+- |.-+
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~-~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va 283 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYR-SLGKYDEAVNLYEEALTIREEVFGEDHPAVA 283 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 345667789999999999999998 5555566666995444 6899999999999999863 4445
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439 189 NVLSMYGDLIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 189 ~~l~~lA~ll~~~~G~~eeAi~~fekAL~l 218 (223)
.++.++|.+++. .|++++|..++++|+.+
T Consensus 284 ~~l~nLa~ly~~-~GKf~EA~~~~e~Al~I 312 (508)
T KOG1840|consen 284 ATLNNLAVLYYK-QGKFAEAEEYCERALEI 312 (508)
T ss_pred HHHHHHHHHHhc-cCChHHHHHHHHHHHHH
Confidence 778899988887 99999999999999876
No 122
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.03 E-value=2.9e-05 Score=65.60 Aligned_cols=93 Identities=20% Similarity=0.241 Sum_probs=71.2
Q ss_pred ccCCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHc
Q 027439 129 DPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG---NVLSMYGDLIWQSH 202 (223)
Q Consensus 129 Y~~~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~---~~l~~lA~ll~~~~ 202 (223)
+...|+|.+|+..|++++...|.. +.+...+|.+++ ..++|++|+..+++.+...|+++ .+++.+|.+.+...
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y-~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~ 93 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY-KQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQI 93 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhC
Confidence 345689999999999999998876 567889997777 58999999999999999999875 56778887655422
Q ss_pred ----------CCHHHHHHHHHHHHHhCCCC
Q 027439 203 ----------KDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 203 ----------G~~eeAi~~fekAL~l~Pdn 222 (223)
....+|+..|+..++..|+.
T Consensus 94 ~~~~~~~~D~~~~~~A~~~~~~li~~yP~S 123 (203)
T PF13525_consen 94 PGILRSDRDQTSTRKAIEEFEELIKRYPNS 123 (203)
T ss_dssp HHHH-TT---HHHHHHHHHHHHHHHH-TTS
T ss_pred ccchhcccChHHHHHHHHHHHHHHHHCcCc
Confidence 23458999999999999974
No 123
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.00 E-value=4.3e-06 Score=78.89 Aligned_cols=92 Identities=18% Similarity=0.173 Sum_probs=83.4
Q ss_pred ccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439 129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208 (223)
Q Consensus 129 Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA 208 (223)
+..-++|+.|+..|.+||+++|+++.++.+.+ ..+.+.++|..|+.-+.+||+++|.....+...|.++.. .+++.+|
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa-~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~-l~~~~~A 91 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRA-LAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA-LGEFKKA 91 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhh-hhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh-HHHHHHH
Confidence 34457999999999999999999999999999 444468999999999999999999999999999977777 9999999
Q ss_pred HHHHHHHHHhCCCC
Q 027439 209 ESYFDQAVKAAPDD 222 (223)
Q Consensus 209 i~~fekAL~l~Pdn 222 (223)
+..|++...+.|++
T Consensus 92 ~~~l~~~~~l~Pnd 105 (476)
T KOG0376|consen 92 LLDLEKVKKLAPND 105 (476)
T ss_pred HHHHHHhhhcCcCc
Confidence 99999999999975
No 124
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.00 E-value=6.8e-06 Score=50.52 Aligned_cols=32 Identities=31% Similarity=0.463 Sum_probs=15.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHH
Q 027439 142 YQKMIQADPRNPLLLSNYARFLKEARGDLLKAE 174 (223)
Q Consensus 142 y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~ 174 (223)
|+++|+++|+|+.+|++||.++. ..|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~-~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYL-NQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHH-HCcCHHhhc
Confidence 44455555555555555553333 244444443
No 125
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.00 E-value=1.6e-05 Score=51.10 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027439 154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGD 196 (223)
Q Consensus 154 ~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ 196 (223)
.++..+|.++. .+|++++|++.|+++++.+|+|+.++..++.
T Consensus 2 ~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 56788996666 5899999999999999999999999998874
No 126
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.98 E-value=0.00015 Score=57.75 Aligned_cols=82 Identities=15% Similarity=0.147 Sum_probs=69.7
Q ss_pred CCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCH
Q 027439 132 NHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDA 205 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d---~~~l~~lA~ll~~~~G~~ 205 (223)
.++...+...+++.++.+|+. ..+...+|..++. .+++++|...|++++...|++ ..+...+|.+++. .|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~-~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE-QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCH
Confidence 468888999999999999999 5667778877774 899999999999999988665 3567788988887 9999
Q ss_pred HHHHHHHHHH
Q 027439 206 SRAESYFDQA 215 (223)
Q Consensus 206 eeAi~~fekA 215 (223)
++|+..++++
T Consensus 102 d~Al~~L~~~ 111 (145)
T PF09976_consen 102 DEALATLQQI 111 (145)
T ss_pred HHHHHHHHhc
Confidence 9999999763
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.96 E-value=5.1e-05 Score=77.17 Aligned_cols=82 Identities=22% Similarity=0.285 Sum_probs=72.6
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~ 204 (223)
-|.+|.+.+++++|.+.|+++++++|+|+.++++||+++.. . +.++|++++.+|+.. ++. .++
T Consensus 122 LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-~-dL~KA~~m~~KAV~~--------------~i~-~kq 184 (906)
T PRK14720 122 LAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE-E-DKEKAITYLKKAIYR--------------FIK-KKQ 184 (906)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-h-hHHHHHHHHHHHHHH--------------HHh-hhc
Confidence 45677788999999999999999999999999999977775 4 999999999999997 444 678
Q ss_pred HHHHHHHHHHHHHhCCCCC
Q 027439 205 ASRAESYFDQAVKAAPDDW 223 (223)
Q Consensus 205 ~eeAi~~fekAL~l~Pdn~ 223 (223)
+..+..++++.++.+|+++
T Consensus 185 ~~~~~e~W~k~~~~~~~d~ 203 (906)
T PRK14720 185 YVGIEEIWSKLVHYNSDDF 203 (906)
T ss_pred chHHHHHHHHHHhcCcccc
Confidence 9999999999999999864
No 128
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.94 E-value=9.5e-06 Score=49.87 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=31.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 027439 176 YCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES 210 (223)
Q Consensus 176 ~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~ 210 (223)
+|++||+++|+|+.+|..+|.++.. .|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~-~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLN-QGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHH-CcCHHhhcC
Confidence 4899999999999999999988887 999999973
No 129
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.94 E-value=8.8e-05 Score=65.71 Aligned_cols=70 Identities=20% Similarity=0.151 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 152 n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d---~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
+....+..|..+....++|++|+..|++.+...|++ +.+++.+|.+++. .|++++|+.+|+++++..|++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s 213 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKS 213 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCC
Confidence 345556666555445689999999999999999998 5899999999988 999999999999999998874
No 130
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.93 E-value=0.00013 Score=59.09 Aligned_cols=85 Identities=14% Similarity=0.176 Sum_probs=72.2
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHH
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG----NVLSMYGDLIWQSHKDASRA 208 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~----~~l~~lA~ll~~~~G~~eeA 208 (223)
++.+.|++.|.+++.+-|.++.+|+|.|..+.. +++.++|++-+.+|+++..+.. .++.-.|. +|...|+.+.|
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~-lyRl~g~dd~A 134 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALRL-QGDDEEALDDLNKALELAGDQTRTACQAFVQRGL-LYRLLGNDDAA 134 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHHH-cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HHHHhCchHHH
Confidence 378999999999999999999999999988886 7999999999999999976543 34455564 45559999999
Q ss_pred HHHHHHHHHhC
Q 027439 209 ESYFDQAVKAA 219 (223)
Q Consensus 209 i~~fekAL~l~ 219 (223)
..-|+.|-++.
T Consensus 135 R~DFe~AA~LG 145 (175)
T KOG4555|consen 135 RADFEAAAQLG 145 (175)
T ss_pred HHhHHHHHHhC
Confidence 99999987663
No 131
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.92 E-value=2.3e-05 Score=75.40 Aligned_cols=92 Identities=20% Similarity=0.271 Sum_probs=72.8
Q ss_pred ccccccCCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCH---
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQA--------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS-----PNDG--- 188 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLel--------dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld-----P~d~--- 188 (223)
-|.+|...++|.+|+.+|++|+.+ +|.-+.++.+||..++ ..|+|++|..+|++|+++. .+.+
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~-~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY-KQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 456777789999999999999975 4555678999995555 6899999999999999874 2233
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439 189 NVLSMYGDLIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 189 ~~l~~lA~ll~~~~G~~eeAi~~fekAL~l 218 (223)
..+..++.++.. .+++++|+.+|++++++
T Consensus 326 ~~l~~~~~~~~~-~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 326 AQLSELAAILQS-MNEYEEAKKLLQKALKI 354 (508)
T ss_pred HHHHHHHHHHHH-hcchhHHHHHHHHHHHH
Confidence 445555644555 99999999999999876
No 132
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.91 E-value=8.8e-06 Score=74.35 Aligned_cols=92 Identities=13% Similarity=0.083 Sum_probs=73.0
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA 205 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ 205 (223)
+++|+..+++++|.++|+++++++|.|.++....|.-++ ..++.+-|+.+|++.+.+.-.+++.+.++|-+++. .+++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yf-Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y-aqQ~ 374 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYF-YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY-AQQI 374 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccc-cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh-hcch
Confidence 577777888888888888888888888888777775455 36788888888888888888888888888866655 7888
Q ss_pred HHHHHHHHHHHHhC
Q 027439 206 SRAESYFDQAVKAA 219 (223)
Q Consensus 206 eeAi~~fekAL~l~ 219 (223)
+-++.-|++|+...
T Consensus 375 D~~L~sf~RAlsta 388 (478)
T KOG1129|consen 375 DLVLPSFQRALSTA 388 (478)
T ss_pred hhhHHHHHHHHhhc
Confidence 88888888887653
No 133
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.91 E-value=2.8e-05 Score=69.68 Aligned_cols=87 Identities=21% Similarity=0.222 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH-HHHHHHH
Q 027439 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA-SRAESYF 212 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~-eeAi~~f 212 (223)
.+.+|.-.|++..+..+.++.+++.+|. +...+++|++|+..+++|+..+|++++++.++..+... .|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~-~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~-~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAV-CHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLH-LGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHH-HHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH-TT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-hCCChhHHHHHH
Confidence 5666677777766666666777767773 33356777777777777777777777777777755455 5655 5566666
Q ss_pred HHHHHhCCCC
Q 027439 213 DQAVKAAPDD 222 (223)
Q Consensus 213 ekAL~l~Pdn 222 (223)
.++...+|++
T Consensus 260 ~qL~~~~p~h 269 (290)
T PF04733_consen 260 SQLKQSNPNH 269 (290)
T ss_dssp HHCHHHTTTS
T ss_pred HHHHHhCCCC
Confidence 6666666653
No 134
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.90 E-value=7.5e-05 Score=75.43 Aligned_cols=72 Identities=14% Similarity=0.050 Sum_probs=45.0
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR--GDLLKAEEYCARAILMSPNDGNVLSMYGDL 197 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~--gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l 197 (223)
|+++...++.+.|+..+++++++||.++.++..||.+-...+ ..|.+|+.++.+|...+|+||.++..+|..
T Consensus 206 g~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~ 279 (1018)
T KOG2002|consen 206 GHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANH 279 (1018)
T ss_pred hhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Confidence 366666677777777777777777777766666664332211 235666666666666666666666555544
No 135
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.89 E-value=3.5e-05 Score=77.71 Aligned_cols=95 Identities=20% Similarity=0.284 Sum_probs=56.1
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRN-PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK- 203 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n-~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G- 203 (223)
|+.|...|||++|-++|.++++.+|++ ...+..+|..+. ++++++.|+.+|++.++.+|++..++..+|-++.. .+
T Consensus 314 gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i-~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~-~~~ 391 (1018)
T KOG2002|consen 314 GRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI-KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAH-SAK 391 (1018)
T ss_pred HHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH-HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHh-hhh
Confidence 445555666666666666666666666 555555664444 35666666666666666666666666666643332 21
Q ss_pred ---CHHHHHHHHHHHHHhCCCC
Q 027439 204 ---DASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 204 ---~~eeAi~~fekAL~l~Pdn 222 (223)
..++|..++.++++..|.|
T Consensus 392 ~~~~~d~a~~~l~K~~~~~~~d 413 (1018)
T KOG2002|consen 392 KQEKRDKASNVLGKVLEQTPVD 413 (1018)
T ss_pred hhHHHHHHHHHHHHHHhccccc
Confidence 3456666666666655543
No 136
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.86 E-value=6.3e-05 Score=71.32 Aligned_cols=93 Identities=20% Similarity=0.208 Sum_probs=73.0
Q ss_pred cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 027439 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (223)
Q Consensus 128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee 207 (223)
.-..+||+++|.+.|++++.-+.....+++|.| .-+..+++.++|+++|-+...+--++..++..+|.++-. ..+...
T Consensus 499 ~~f~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~-led~aq 576 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL-LEDPAQ 576 (840)
T ss_pred eeeecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhCHHH
Confidence 345578999999999999988888888888888 444567888888888888777777788888888876555 788888
Q ss_pred HHHHHHHHHHhCCCC
Q 027439 208 AESYFDQAVKAAPDD 222 (223)
Q Consensus 208 Ai~~fekAL~l~Pdn 222 (223)
|+++|-++..+-|+|
T Consensus 577 aie~~~q~~slip~d 591 (840)
T KOG2003|consen 577 AIELLMQANSLIPND 591 (840)
T ss_pred HHHHHHHhcccCCCC
Confidence 888888887776664
No 137
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=2.9e-05 Score=72.51 Aligned_cols=96 Identities=13% Similarity=0.091 Sum_probs=83.0
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH------------HH
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV------------LS 192 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~------------l~ 192 (223)
++.++.-.+++++|...--..+++++.|..++.-.+.++|. ..+.++|+.+|++++.++|+.... +.
T Consensus 175 ka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy-~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 175 KAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYY-NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccccccc-ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH
Confidence 44566667899999999999999999999999999988885 899999999999999999987543 33
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 193 MYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 193 ~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
.-|+-.++ +|++.+|.+.|..||.++|+|
T Consensus 254 ~~gN~~fk-~G~y~~A~E~Yteal~idP~n 282 (486)
T KOG0550|consen 254 ERGNDAFK-NGNYRKAYECYTEALNIDPSN 282 (486)
T ss_pred hhhhhHhh-ccchhHHHHHHHHhhcCCccc
Confidence 34444788 999999999999999999986
No 138
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.83 E-value=5.6e-05 Score=45.01 Aligned_cols=33 Identities=21% Similarity=0.435 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 189 NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 189 ~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
.+++.+|.+++. .|++++|+++|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcCC
Confidence 344555554444 555555555555555555543
No 139
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.82 E-value=9e-05 Score=70.29 Aligned_cols=93 Identities=15% Similarity=0.095 Sum_probs=61.4
Q ss_pred cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 027439 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (223)
Q Consensus 128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee 207 (223)
+|.+.||-.+|.+|+-..++..|-|..+.-.+|. +|....-.++|+.+|++|-.+.|+......+.|. +++..|+|++
T Consensus 601 lydqegdksqafq~~ydsyryfp~nie~iewl~a-yyidtqf~ekai~y~ekaaliqp~~~kwqlmias-c~rrsgnyqk 678 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAA-YYIDTQFSEKAINYFEKAALIQPNQSKWQLMIAS-CFRRSGNYQK 678 (840)
T ss_pred HhhcccchhhhhhhhhhcccccCcchHHHHHHHH-HHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHH-HHHhcccHHH
Confidence 3334444444444444444444444444444442 2222334589999999999999988777777775 4555999999
Q ss_pred HHHHHHHHHHhCCCC
Q 027439 208 AESYFDQAVKAAPDD 222 (223)
Q Consensus 208 Ai~~fekAL~l~Pdn 222 (223)
|++.|+..-...|+|
T Consensus 679 a~d~yk~~hrkfped 693 (840)
T KOG2003|consen 679 AFDLYKDIHRKFPED 693 (840)
T ss_pred HHHHHHHHHHhCccc
Confidence 999999998888876
No 140
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.82 E-value=8.1e-05 Score=75.54 Aligned_cols=91 Identities=22% Similarity=0.155 Sum_probs=78.6
Q ss_pred CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHHH
Q 027439 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ--SHKDASRA 208 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~--~~G~~eeA 208 (223)
.+.+|++|++..+++++.||+|-.++..+|.++....++.++|.++|-.|.+++|++.-+|..++.++-. .--+++++
T Consensus 14 ~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ld~~ 93 (1238)
T KOG1127|consen 14 RNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDLDRA 93 (1238)
T ss_pred hhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhhhHh
Confidence 4679999999999999999999999999998888633449999999999999999999999999976544 23468899
Q ss_pred HHHHHHHHHhCCC
Q 027439 209 ESYFDQAVKAAPD 221 (223)
Q Consensus 209 i~~fekAL~l~Pd 221 (223)
-..|++++...++
T Consensus 94 ~~~yq~~~l~le~ 106 (1238)
T KOG1127|consen 94 AKCYQRAVLILEN 106 (1238)
T ss_pred HHHHHHHHHhhhh
Confidence 9999999887664
No 141
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.79 E-value=0.00012 Score=66.67 Aligned_cols=89 Identities=19% Similarity=0.203 Sum_probs=76.8
Q ss_pred CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHH
Q 027439 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG-NVLSMYGDLIWQSHKDASRAE 209 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~-~~l~~lA~ll~~~~G~~eeAi 209 (223)
...+.++|...+.+|++.||+++.+-..+|++.. .+|+|++|++.++++++.||+.. .++-.+..+ |...|+.++.+
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~-~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~-Y~~lg~~~~~~ 269 (389)
T COG2956 192 ASSDVDRARELLKKALQADKKCVRASIILGRVEL-AKGDYQKAVEALERVLEQNPEYLSEVLEMLYEC-YAQLGKPAEGL 269 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHH-hccchHHHHHHHHHHHHhChHHHHHHHHHHHHH-HHHhCCHHHHH
Confidence 3468899999999999999999999999997776 58999999999999999999864 666666654 44499999999
Q ss_pred HHHHHHHHhCCC
Q 027439 210 SYFDQAVKAAPD 221 (223)
Q Consensus 210 ~~fekAL~l~Pd 221 (223)
..+.++.+..++
T Consensus 270 ~fL~~~~~~~~g 281 (389)
T COG2956 270 NFLRRAMETNTG 281 (389)
T ss_pred HHHHHHHHccCC
Confidence 999999887664
No 142
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.79 E-value=5.7e-05 Score=65.76 Aligned_cols=93 Identities=12% Similarity=0.091 Sum_probs=78.0
Q ss_pred cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 027439 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (223)
Q Consensus 128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee 207 (223)
+|.+.|-++-|.--|.+++.+.|+-+.+++-+|.++. ..++|+.|.+.|.-.+++||.+.-++.+.|..+|- -|+++-
T Consensus 74 lYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~-~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~gR~~L 151 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRYKL 151 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHH-hcccchHHHHHhhhHhccCCcchHHHhccceeeee-cCchHh
Confidence 4555667778888889999999999999999995555 47999999999999999999988888888866666 899999
Q ss_pred HHHHHHHHHHhCCCC
Q 027439 208 AESYFDQAVKAAPDD 222 (223)
Q Consensus 208 Ai~~fekAL~l~Pdn 222 (223)
|.+.|.+-.+.+|+|
T Consensus 152 Aq~d~~~fYQ~D~~D 166 (297)
T COG4785 152 AQDDLLAFYQDDPND 166 (297)
T ss_pred hHHHHHHHHhcCCCC
Confidence 999999988888876
No 143
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.77 E-value=1.7e-05 Score=56.10 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=46.1
Q ss_pred cccccCCCChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQAD-------PRNPLLLSNYARFLKEARGDLLKAEEYCARAILM 183 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeld-------P~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l 183 (223)
|.+|...+++++|+.+|++++++. |.-+.++.++|.++. ..|++++|++++++++++
T Consensus 12 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 12 ARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY-RLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Confidence 456778899999999999999752 223667999996666 589999999999999986
No 144
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00015 Score=64.18 Aligned_cols=90 Identities=16% Similarity=0.220 Sum_probs=76.4
Q ss_pred cCCCChHHHHHHHHHHHH--------hCCCCH----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 027439 130 PNNHGNNSTDLYYQKMIQ--------ADPRNP----------LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVL 191 (223)
Q Consensus 130 ~~~gd~~eA~~~y~~aLe--------ldP~n~----------~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l 191 (223)
+..++|.+|...|+.|+- ..|..+ ..+.||+.++. ..++|-++++.|...+..+|.|..++
T Consensus 189 fk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L-~~~e~yevleh~seiL~~~~~nvKA~ 267 (329)
T KOG0545|consen 189 FKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL-KKEEYYEVLEHCSEILRHHPGNVKAY 267 (329)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh-hHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 345799999999999875 245443 45779997776 47999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439 192 SMYGDLIWQSHKDASRAESYFDQAVKAAPD 221 (223)
Q Consensus 192 ~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd 221 (223)
+..|.+... .=+.++|.+-|+++|+++|.
T Consensus 268 frRakAhaa-~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 268 FRRAKAHAA-VWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHHHHHh-hcCHHHHHHHHHHHHhcChh
Confidence 999988776 67899999999999999984
No 145
>PRK15331 chaperone protein SicA; Provisional
Probab=97.75 E-value=0.00016 Score=60.01 Aligned_cols=74 Identities=14% Similarity=0.016 Sum_probs=64.0
Q ss_pred hCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Q 027439 148 ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDW 223 (223)
Q Consensus 148 ldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn~ 223 (223)
+.++.......+|.-+| ..|++++|+.+|+-+...+|.+++.+..+|.++.. +++|++|+..|-.|..++++|.
T Consensus 32 is~~~le~iY~~Ay~~y-~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-~k~y~~Ai~~Y~~A~~l~~~dp 105 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFY-NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-KKQFQKACDLYAVAFTLLKNDY 105 (165)
T ss_pred CCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcccCCC
Confidence 34555666778887777 48999999999999999999999999999977666 9999999999999999988763
No 146
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.75 E-value=0.00024 Score=55.92 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439 154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD 221 (223)
Q Consensus 154 ~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d---~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd 221 (223)
.+++++| +.+...|+.++|+.+|++|+....+. ..++..+|..+.. .|++++|+..+++++...|+
T Consensus 2 ~~~~~~A-~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 2 RALYELA-WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LGRYDEALALLEEALEEFPD 70 (120)
T ss_pred chHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCC
Confidence 4577888 45557899999999999999986655 4677888877777 99999999999999998887
No 147
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.70 E-value=8.3e-05 Score=44.63 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 027439 154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPN 186 (223)
Q Consensus 154 ~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~ 186 (223)
.+|.++|.++. .++++++|+.+|++|++++|+
T Consensus 2 ~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYF-QLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcC
Confidence 34555554333 355666666666666665554
No 148
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.00023 Score=65.23 Aligned_cols=96 Identities=11% Similarity=0.011 Sum_probs=75.9
Q ss_pred CccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 027439 124 RWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK 203 (223)
Q Consensus 124 ~gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G 203 (223)
+.|++|...|-+.+|++.++..++..|. ++.+.-++++|. +..+...|+..+.+.+...|.|...+...|.++-. .+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~-ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea-m~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQ-RIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA-ME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHH-HhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH-HH
Confidence 4678888889999999999998888776 555556775554 57788888888888888888888888888877666 78
Q ss_pred CHHHHHHHHHHHHHhCCCC
Q 027439 204 DASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 204 ~~eeAi~~fekAL~l~Pdn 222 (223)
++++|.++|+.+++.+|.|
T Consensus 305 ~~~~a~~lYk~vlk~~~~n 323 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPIN 323 (478)
T ss_pred hHHHHHHHHHHHHhcCCcc
Confidence 8888888888888887765
No 149
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.67 E-value=9.4e-05 Score=44.40 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 188 GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 188 ~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
+.+|..+|.+++. ++++++|+..|++|++++|+|
T Consensus 1 a~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQ-LGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHH-hCCchHHHHHHHHHHHHCcCC
Confidence 4678999988887 999999999999999999975
No 150
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.66 E-value=9.1e-05 Score=73.03 Aligned_cols=94 Identities=15% Similarity=0.124 Sum_probs=73.8
Q ss_pred cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH---------------------------HHHhCCHHHHHHHHHHH
Q 027439 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFL---------------------------KEARGDLLKAEEYCARA 180 (223)
Q Consensus 128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l---------------------------~~~~gdyeeA~~~~ekA 180 (223)
+|...|+..+|..+..+-++ .|.++..|..+|.++ ..++++|+++.+++++.
T Consensus 433 CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~s 511 (777)
T KOG1128|consen 433 CYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERS 511 (777)
T ss_pred HHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHH
Confidence 34445666777777777677 455555555555442 11357899999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Q 027439 181 ILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDW 223 (223)
Q Consensus 181 L~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn~ 223 (223)
++++|-....|+.+|-+.++ .++++.|..+|.+.+.++|+++
T Consensus 512 l~~nplq~~~wf~~G~~ALq-lek~q~av~aF~rcvtL~Pd~~ 553 (777)
T KOG1128|consen 512 LEINPLQLGTWFGLGCAALQ-LEKEQAAVKAFHRCVTLEPDNA 553 (777)
T ss_pred hhcCccchhHHHhccHHHHH-HhhhHHHHHHHHHHhhcCCCch
Confidence 99999999999999987777 9999999999999999999985
No 151
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.65 E-value=0.00015 Score=43.12 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 027439 153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND 187 (223)
Q Consensus 153 ~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d 187 (223)
+.++..+|.+++ .++++++|+++|+++++++|+|
T Consensus 1 a~~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYY-QLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCcCC
Confidence 467889997666 5899999999999999999986
No 152
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.62 E-value=0.0003 Score=62.51 Aligned_cols=86 Identities=17% Similarity=0.259 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027439 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFD 213 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fe 213 (223)
..+.|...|.+|.+..+-+..+|..+|..-+...++.+.|..+|+++++..|++..+|..|.+.+.. .++.+.|+..|+
T Consensus 16 g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~-~~d~~~aR~lfe 94 (280)
T PF05843_consen 16 GIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK-LNDINNARALFE 94 (280)
T ss_dssp HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hCcHHHHHHHHH
Confidence 4677788888887666666777777774434324566668888888888888888888888877766 778888888888
Q ss_pred HHHHhCC
Q 027439 214 QAVKAAP 220 (223)
Q Consensus 214 kAL~l~P 220 (223)
+++..-|
T Consensus 95 r~i~~l~ 101 (280)
T PF05843_consen 95 RAISSLP 101 (280)
T ss_dssp HHCCTSS
T ss_pred HHHHhcC
Confidence 8775533
No 153
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.61 E-value=0.00016 Score=70.53 Aligned_cols=89 Identities=10% Similarity=0.043 Sum_probs=67.9
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 027439 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~ 211 (223)
.|+-++|..+.+.+++.|+.....|..+| .++...++|++|+++|+.|+.++|+|-.+|..++.+ ..+.++++-....
T Consensus 54 lg~~~ea~~~vr~glr~d~~S~vCwHv~g-l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslL-Q~QmRd~~~~~~t 131 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLKSHVCWHVLG-LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLL-QIQMRDYEGYLET 131 (700)
T ss_pred ccchHHHHHHHHHHhccCcccchhHHHHH-HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHHHHhhhhHHHH
Confidence 46778888888888888888888888888 444346788888888888888888888888888844 4447888888877
Q ss_pred HHHHHHhCCCC
Q 027439 212 FDQAVKAAPDD 222 (223)
Q Consensus 212 fekAL~l~Pdn 222 (223)
-.+.+++.|.+
T Consensus 132 r~~LLql~~~~ 142 (700)
T KOG1156|consen 132 RNQLLQLRPSQ 142 (700)
T ss_pred HHHHHHhhhhh
Confidence 77887777653
No 154
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.60 E-value=0.00027 Score=69.07 Aligned_cols=89 Identities=10% Similarity=0.084 Sum_probs=71.7
Q ss_pred cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 027439 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (223)
Q Consensus 128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee 207 (223)
+|....+|++|++||+.|+.++|+|..+|..++ .+..+.++|+-...--.+.++++|.+-..|..+|...+. .|++..
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDls-lLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L-~g~y~~ 161 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIEKDNLQILRDLS-LLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL-LGEYKM 161 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HHHHHH
Confidence 345567889999999999999999999888888 455457888888888888888888888888888877777 888888
Q ss_pred HHHHHHHHHHh
Q 027439 208 AESYFDQAVKA 218 (223)
Q Consensus 208 Ai~~fekAL~l 218 (223)
|...++...+.
T Consensus 162 A~~il~ef~~t 172 (700)
T KOG1156|consen 162 ALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHHHh
Confidence 88777665543
No 155
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.60 E-value=0.00043 Score=68.65 Aligned_cols=87 Identities=17% Similarity=0.242 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027439 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM-SPNDGNVLSMYGDLIWQSHKDASRAESYFD 213 (223)
Q Consensus 135 ~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l-dP~d~~~l~~lA~ll~~~~G~~eeAi~~fe 213 (223)
..++++.++++++.+|.|+.+.+.++..+. .+++.+.|.+++++++++ .-+++.+|..+|-++-. .+++.+|+...+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq~A-~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa-~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQYA-EQRQLTSALDYAREALALNRGDSAKAWHLLALVLSA-QKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHH-HHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence 467999999999999999999999996555 479999999999999999 55678899999955555 999999999999
Q ss_pred HHHHhCCCCC
Q 027439 214 QAVKAAPDDW 223 (223)
Q Consensus 214 kAL~l~Pdn~ 223 (223)
.+++..|+|+
T Consensus 538 ~al~E~~~N~ 547 (799)
T KOG4162|consen 538 AALEEFGDNH 547 (799)
T ss_pred HHHHHhhhhh
Confidence 9999988864
No 156
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0002 Score=65.48 Aligned_cols=95 Identities=13% Similarity=0.107 Sum_probs=80.9
Q ss_pred CCccccccCCCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 027439 123 GRWGSWDPNNHGNNSTDLYYQKMIQADPR----NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLI 198 (223)
Q Consensus 123 ~~gg~~Y~~~gd~~eA~~~y~~aLeldP~----n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll 198 (223)
..-|.-|.+..+|..|+.+|.+.|+..-. |+..|.|+|.+.+ ..++|-.|+.-|.+|+.++|.+..++++-|.++
T Consensus 85 KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~-~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 85 KEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQL-YLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 34566777788999999999999987544 4567899996666 489999999999999999999999999999888
Q ss_pred HHHcCCHHHHHHHHHHHHHhC
Q 027439 199 WQSHKDASRAESYFDQAVKAA 219 (223)
Q Consensus 199 ~~~~G~~eeAi~~fekAL~l~ 219 (223)
+. +.++.+|..+++..++++
T Consensus 164 ~e-Le~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 164 LE-LERFAEAVNWCEEGLQID 183 (390)
T ss_pred HH-HHHHHHHHHHHhhhhhhh
Confidence 88 999999999888877664
No 157
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00026 Score=66.43 Aligned_cols=95 Identities=20% Similarity=0.235 Sum_probs=80.2
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH----------------------------------HHHhCCH
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFL----------------------------------KEARGDL 170 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l----------------------------------~~~~gdy 170 (223)
-+.+|...|++++|+..|+++.-+||++....-.||..+ +. .++|
T Consensus 238 lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~-~K~~ 316 (564)
T KOG1174|consen 238 LGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYD-EKKF 316 (564)
T ss_pred HhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhh-hhhH
Confidence 567888889999999999999999999887766666332 22 3567
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439 171 LKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD 221 (223)
Q Consensus 171 eeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd 221 (223)
..|+.+-+|+|..+|++..++..-|.++.. .++.++|+-.|+.|..+.|-
T Consensus 317 ~rAL~~~eK~I~~~~r~~~alilKG~lL~~-~~R~~~A~IaFR~Aq~Lap~ 366 (564)
T KOG1174|consen 317 ERALNFVEKCIDSEPRNHEALILKGRLLIA-LERHTQAVIAFRTAQMLAPY 366 (564)
T ss_pred HHHHHHHHHHhccCcccchHHHhccHHHHh-ccchHHHHHHHHHHHhcchh
Confidence 889999999999999999999999988777 99999999999999888774
No 158
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.58 E-value=0.00063 Score=62.81 Aligned_cols=88 Identities=17% Similarity=0.175 Sum_probs=83.1
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF 212 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~f 212 (223)
||...|++.....+++.|-++.++..+|.++. ..++..+|+.-+..+-++..++...++.++.++|. .|+.+.++...
T Consensus 169 GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i-~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~-vgd~~~sL~~i 246 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEIQPWDASLRQARAKCYI-AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT-VGDAENSLKEI 246 (504)
T ss_pred CchhhHHHHHHHHHhcCcchhHHHHHHHHHHH-hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh-hhhHHHHHHHH
Confidence 48899999999999999999999999997666 58999999999999999999999999999999999 99999999999
Q ss_pred HHHHHhCCCC
Q 027439 213 DQAVKAAPDD 222 (223)
Q Consensus 213 ekAL~l~Pdn 222 (223)
+..|+++|++
T Consensus 247 RECLKldpdH 256 (504)
T KOG0624|consen 247 RECLKLDPDH 256 (504)
T ss_pred HHHHccCcch
Confidence 9999999985
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.58 E-value=5e-05 Score=54.81 Aligned_cols=52 Identities=17% Similarity=0.325 Sum_probs=44.1
Q ss_pred hCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 027439 167 RGDLLKAEEYCARAILMSPN--DGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAP 220 (223)
Q Consensus 167 ~gdyeeA~~~~ekAL~ldP~--d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~P 220 (223)
+++|++|+.+++++++.+|. +..+++.+|.+++. .|++++|+.++++ +..++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~ 55 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDP 55 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCC
Confidence 68999999999999999995 46677778999999 9999999999988 55444
No 160
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.53 E-value=0.00056 Score=66.12 Aligned_cols=87 Identities=22% Similarity=0.126 Sum_probs=76.4
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e 206 (223)
..|...|++++|+++.+++|+..|..++.+...|+++. +.|++++|.+..+.|-.+|+.|-.+-...+..+++ .|+.+
T Consensus 202 qhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK-h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR-a~~~e 279 (517)
T PF12569_consen 202 QHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK-HAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR-AGRIE 279 (517)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH-CCCHH
Confidence 33456799999999999999999999999999998888 58999999999999999999988888777766666 99999
Q ss_pred HHHHHHHHH
Q 027439 207 RAESYFDQA 215 (223)
Q Consensus 207 eAi~~fekA 215 (223)
+|+..+..-
T Consensus 280 ~A~~~~~~F 288 (517)
T PF12569_consen 280 EAEKTASLF 288 (517)
T ss_pred HHHHHHHhh
Confidence 999877654
No 161
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.53 E-value=0.0024 Score=50.42 Aligned_cols=84 Identities=13% Similarity=0.108 Sum_probs=62.6
Q ss_pred CChHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 027439 133 HGNNSTDLYYQKMIQADPRN----------------------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV 190 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n----------------------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~ 190 (223)
++.+.++..+++++.+...+ ..++..++..+. ..+++++|+..+++++..+|-+-.+
T Consensus 20 ~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~l~~dP~~E~~ 98 (146)
T PF03704_consen 20 GDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALL-EAGDYEEALRLLQRALALDPYDEEA 98 (146)
T ss_dssp T-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHhcCCCCHHH
Confidence 47788888888888864321 233455554444 5799999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439 191 LSMYGDLIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 191 l~~lA~ll~~~~G~~eeAi~~fekAL~l 218 (223)
+..+-.++.. .|++.+|+..|++....
T Consensus 99 ~~~lm~~~~~-~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 99 YRLLMRALAA-QGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 9999988888 99999999999987543
No 162
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.53 E-value=0.00016 Score=64.87 Aligned_cols=94 Identities=16% Similarity=0.024 Sum_probs=73.8
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG--DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~g--dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~ 204 (223)
.+|...++++.|.+.++++.+.+.+...+...-|++.. ..| .+.+|..+|+......+..+.++..+|.+... +|+
T Consensus 139 qi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l-~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-~~~ 216 (290)
T PF04733_consen 139 QILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNL-ATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-LGH 216 (290)
T ss_dssp HHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHH-HHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-CT-
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH-HhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCC
Confidence 45566789999999999999998887776666664333 444 69999999999888888899999999977666 999
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 027439 205 ASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 205 ~eeAi~~fekAL~l~Pdn 222 (223)
+++|...+++|+..+|+|
T Consensus 217 ~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 217 YEEAEELLEEALEKDPND 234 (290)
T ss_dssp HHHHHHHHHHHCCC-CCH
T ss_pred HHHHHHHHHHHHHhccCC
Confidence 999999999999888864
No 163
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.51 E-value=0.00095 Score=58.29 Aligned_cols=69 Identities=13% Similarity=0.011 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVL---SMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 152 n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l---~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
.+..+...|..++ ..++|++|++.|++++...|..+.+. ..+|.+++. .+++++|+.+|++.++..|++
T Consensus 31 ~~~~~Y~~A~~~~-~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~ 102 (243)
T PRK10866 31 PPSEIYATAQQKL-QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTH 102 (243)
T ss_pred CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCC
Confidence 4444556665555 47999999999999999999987665 788888888 999999999999999999986
No 164
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.43 E-value=0.001 Score=59.03 Aligned_cols=88 Identities=17% Similarity=0.249 Sum_probs=74.3
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHH
Q 027439 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG---NVLSMYGDLIWQSHKDASRA 208 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~---~~l~~lA~ll~~~~G~~eeA 208 (223)
.++.+.|...|+++++..|.+..+|..|..++. ..++.+.|..+|++++..-|.+. .+|..+...-.. .|+.+..
T Consensus 49 ~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~-~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~-~Gdl~~v 126 (280)
T PF05843_consen 49 NKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI-KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESK-YGDLESV 126 (280)
T ss_dssp CS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHH-HS-HHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH-cCCHHHH
Confidence 467777999999999999999999999998888 58999999999999999877665 578888877777 8999999
Q ss_pred HHHHHHHHHhCCC
Q 027439 209 ESYFDQAVKAAPD 221 (223)
Q Consensus 209 i~~fekAL~l~Pd 221 (223)
...++++.+..|+
T Consensus 127 ~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 127 RKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhh
Confidence 9999999998776
No 165
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.38 E-value=0.0031 Score=48.14 Aligned_cols=92 Identities=23% Similarity=0.280 Sum_probs=64.5
Q ss_pred cccCCCChHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcC
Q 027439 128 WDPNNHGNNSTDLYYQKMIQADP---RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN-DGNVLSMYGDLIWQSHK 203 (223)
Q Consensus 128 ~Y~~~gd~~eA~~~y~~aLeldP---~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~-d~~~l~~lA~ll~~~~G 203 (223)
.|...+++++|..+|++++..+| .....+..++..+. ..+++++|+..+.+++...++ ....+..++..+.. .+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLE-ALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK-LG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHH-HhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH-cc
Confidence 45566788888888888877666 34444445553333 357888888888888888887 57777777766555 77
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 027439 204 DASRAESYFDQAVKAAPD 221 (223)
Q Consensus 204 ~~eeAi~~fekAL~l~Pd 221 (223)
+++.|+..+.+++...|.
T Consensus 217 ~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 217 KYEEALEYYEKALELDPD 234 (291)
T ss_pred cHHHHHHHHHHHHhhCcc
Confidence 788888888888777664
No 166
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.37 E-value=0.00094 Score=65.74 Aligned_cols=89 Identities=15% Similarity=0.096 Sum_probs=74.8
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 027439 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~ 211 (223)
+++.++|+.+++++++..|+...+|.++|.++. ..++.+.|.+.|...++..|+.+..|..++.+--+ .|+.-+|...
T Consensus 664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e-~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk-~~~~~rAR~i 741 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEE-QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK-DGQLVRARSI 741 (913)
T ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHH-HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH-hcchhhHHHH
Confidence 467889999999999999999999999996655 47888888888888888888888888888876555 7788888888
Q ss_pred HHHHHHhCCCC
Q 027439 212 FDQAVKAAPDD 222 (223)
Q Consensus 212 fekAL~l~Pdn 222 (223)
++++...||.|
T Consensus 742 ldrarlkNPk~ 752 (913)
T KOG0495|consen 742 LDRARLKNPKN 752 (913)
T ss_pred HHHHHhcCCCc
Confidence 88888888875
No 167
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.37 E-value=0.00016 Score=46.39 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=33.0
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYAR 161 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~ 161 (223)
++.|...|++++|+++|+++++.+|+|+.+|..+|.
T Consensus 8 a~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 8 ARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 567888999999999999999999999999998873
No 168
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.35 E-value=0.00076 Score=66.37 Aligned_cols=95 Identities=19% Similarity=0.200 Sum_probs=85.4
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA 205 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ 205 (223)
|++|++.++.+.|.+.|...++..|+....|..++ -+-++.+...+|...++++...||++...|.-.-.+-+. .|+.
T Consensus 692 GQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa-kleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR-~gn~ 769 (913)
T KOG0495|consen 692 GQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA-KLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELR-AGNK 769 (913)
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH-HHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHH-cCCH
Confidence 35777888999999999999999999999999999 566678899999999999999999999998777766677 9999
Q ss_pred HHHHHHHHHHHHhCCCC
Q 027439 206 SRAESYFDQAVKAAPDD 222 (223)
Q Consensus 206 eeAi~~fekAL~l~Pdn 222 (223)
+.|...+.|||+.-|++
T Consensus 770 ~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 770 EQAELLMAKALQECPSS 786 (913)
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 99999999999998864
No 169
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.33 E-value=0.00076 Score=56.81 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----------hCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027439 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA----------RGDLLKAEEYCARAILMSPNDGNVLSMYG 195 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~----------~gdyeeA~~~~ekAL~ldP~d~~~l~~lA 195 (223)
-+++|+.-|+++|.++|+...++.++|+++... ..-|++|..+|++|+..+|+|...+..+-
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 468899999999999999999999999887541 12379999999999999999987665554
No 170
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.30 E-value=8.2e-05 Score=68.04 Aligned_cols=87 Identities=15% Similarity=0.094 Sum_probs=77.6
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 027439 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~ 211 (223)
.|.++.|++.|..+|+++|..+.++...+.++. .++....|++-|..|++++|+...-+-..+.+... +|++++|..+
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~l-kl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl-lg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFL-KLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL-LGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceee-eccCCchhhhhhhhhhccCcccccccchhhHHHHH-hhchHHHHHH
Confidence 478999999999999999999999999997766 58999999999999999999988777777766666 9999999999
Q ss_pred HHHHHHhCC
Q 027439 212 FDQAVKAAP 220 (223)
Q Consensus 212 fekAL~l~P 220 (223)
|..|.+++-
T Consensus 205 l~~a~kld~ 213 (377)
T KOG1308|consen 205 LALACKLDY 213 (377)
T ss_pred HHHHHhccc
Confidence 999998853
No 171
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.29 E-value=0.0021 Score=61.49 Aligned_cols=86 Identities=15% Similarity=0.228 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027439 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQA 215 (223)
Q Consensus 136 ~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekA 215 (223)
..-..+|++|+...+.++.+|.++..++. +.+.+.+-...|.+++...|+++++|..-|.-.+..+-+.+.|.+.|.++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~k-k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCK-KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 55678899999999999999999997766 45779999999999999999999999988887888666799999999999
Q ss_pred HHhCCCC
Q 027439 216 VKAAPDD 222 (223)
Q Consensus 216 L~l~Pdn 222 (223)
|..+|++
T Consensus 167 LR~npds 173 (568)
T KOG2396|consen 167 LRFNPDS 173 (568)
T ss_pred hhcCCCC
Confidence 9999975
No 172
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.26 E-value=0.0015 Score=57.73 Aligned_cols=96 Identities=14% Similarity=0.036 Sum_probs=67.5
Q ss_pred ccccccCC-CChHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC----CHHH--H
Q 027439 125 WGSWDPNN-HGNNSTDLYYQKMIQADP--RN----PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN----DGNV--L 191 (223)
Q Consensus 125 gg~~Y~~~-gd~~eA~~~y~~aLeldP--~n----~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~----d~~~--l 191 (223)
.|.+|+.. +++++|+++|++|+++.. +. ..++.++|.++. ..++|++|+.+|+++....-+ ...+ +
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~-~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA-RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 35677777 899999999999998632 22 345678885555 689999999999999885422 1222 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439 192 SMYGDLIWQSHKDASRAESYFDQAVKAAPD 221 (223)
Q Consensus 192 ~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd 221 (223)
+..+.+++...||+..|...|++....+|.
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 334556666699999999999999888774
No 173
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.22 E-value=0.0012 Score=69.23 Aligned_cols=93 Identities=22% Similarity=0.294 Sum_probs=83.2
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCC
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN--DGNVLSMYGDLIWQSHKD 204 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~--d~~~l~~lA~ll~~~~G~ 204 (223)
..|+..+.+++|.++|+++++..-....+|..|+.++. ++.+-++|...+++|++.=|. +..+....|.+.|+ .|+
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl-~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk-~GD 1615 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLL-RQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK-YGD 1615 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHh-cccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh-cCC
Confidence 35667789999999999999998888999999998888 577889999999999999998 78888999988898 999
Q ss_pred HHHHHHHHHHHHHhCCC
Q 027439 205 ASRAESYFDQAVKAAPD 221 (223)
Q Consensus 205 ~eeAi~~fekAL~l~Pd 221 (223)
.++++.+|+-.+...|.
T Consensus 1616 aeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred chhhHHHHHHHHhhCcc
Confidence 99999999999988774
No 174
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.22 E-value=0.0013 Score=67.21 Aligned_cols=90 Identities=13% Similarity=0.087 Sum_probs=75.4
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e 206 (223)
-.|..-+++.+|+..|+-+++.+|.+...|..+|.+|. ..|+|.-|.+.|.||..++|.+..+.+.-|.+... .|+|.
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~-~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd-~GkYk 647 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYP-ESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD-NGKYK 647 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHH-hcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH-hhhHH
Confidence 34556678889999999999999999999999997777 47999999999999999999988888888855555 89999
Q ss_pred HHHHHHHHHHHh
Q 027439 207 RAESYFDQAVKA 218 (223)
Q Consensus 207 eAi~~fekAL~l 218 (223)
+|+..++..++.
T Consensus 648 eald~l~~ii~~ 659 (1238)
T KOG1127|consen 648 EALDALGLIIYA 659 (1238)
T ss_pred HHHHHHHHHHHH
Confidence 999988887654
No 175
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.20 E-value=0.0032 Score=53.91 Aligned_cols=88 Identities=14% Similarity=0.120 Sum_probs=69.8
Q ss_pred CCChHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHH
Q 027439 132 NHGNNSTDLYYQKMIQ-ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN--DGNVLSMYGDLIWQSHKDASRA 208 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLe-ldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~--d~~~l~~lA~ll~~~~G~~eeA 208 (223)
.|++.+|+..|++++. +.-+++..+..+|+..+. .+++..|...+++..+.+|. .++.+..++.++-. .|++..|
T Consensus 102 lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa-~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa-~g~~a~A 179 (251)
T COG4700 102 LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA-IQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA-QGKYADA 179 (251)
T ss_pred hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh-hccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh-cCCchhH
Confidence 4688888888888884 667778888888888885 78888888888888888875 45666677777766 8888888
Q ss_pred HHHHHHHHHhCCC
Q 027439 209 ESYFDQAVKAAPD 221 (223)
Q Consensus 209 i~~fekAL~l~Pd 221 (223)
...|+.++...|+
T Consensus 180 esafe~a~~~ypg 192 (251)
T COG4700 180 ESAFEVAISYYPG 192 (251)
T ss_pred HHHHHHHHHhCCC
Confidence 8888888887664
No 176
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.20 E-value=0.0072 Score=46.06 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=78.9
Q ss_pred cCCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439 130 PNNHGNNSTDLYYQKMIQADPR-NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208 (223)
Q Consensus 130 ~~~gd~~eA~~~y~~aLeldP~-n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA 208 (223)
...++++.|+..+.++++..+. ....+..++..+. ..+++++|...+.+++...|.....+..++..+. ..+.+++|
T Consensus 178 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 255 (291)
T COG0457 178 EALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL-KLGKYEEALEYYEKALELDPDNAEALYNLALLLL-ELGRYEEA 255 (291)
T ss_pred HHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH-HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH-HcCCHHHH
Confidence 3456899999999999999999 6888999996666 5789999999999999999987778888887777 58899999
Q ss_pred HHHHHHHHHhCCC
Q 027439 209 ESYFDQAVKAAPD 221 (223)
Q Consensus 209 i~~fekAL~l~Pd 221 (223)
...+.+++...|.
T Consensus 256 ~~~~~~~~~~~~~ 268 (291)
T COG0457 256 LEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHhCcc
Confidence 9999999988774
No 177
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.14 E-value=0.00098 Score=39.68 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439 190 VLSMYGDLIWQSHKDASRAESYFDQAVKAAPD 221 (223)
Q Consensus 190 ~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd 221 (223)
++..+|.++.. .|++++|+.+|+++++++|+
T Consensus 3 ~~~~lg~~y~~-~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQ-LGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHH-TTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC
Confidence 44555544444 55555555555555555553
No 178
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.12 E-value=0.0048 Score=52.01 Aligned_cols=69 Identities=19% Similarity=0.169 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 152 n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d---~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
.+..+...|...+ ..|+|.+|+..|++++...|.. +.+++.+|.+++. .+++++|+..|++.++..|++
T Consensus 4 ~~~~lY~~a~~~~-~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-~~~y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 4 TAEALYQKALEAL-QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-QGDYEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp -HHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCC
Confidence 3556677886666 4899999999999999998875 5778899999998 999999999999999999975
No 179
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.06 E-value=0.0072 Score=56.26 Aligned_cols=83 Identities=22% Similarity=0.195 Sum_probs=70.6
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF 212 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~f 212 (223)
+++..-++..++.++..|+++..+..+|..++ +++.+.+|..+++.|+...|. ...+..+|.++-. .|+.++|.+.+
T Consensus 308 ~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~-k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~-~g~~~~A~~~r 384 (400)
T COG3071 308 GDPEPLIKAAEKWLKQHPEDPLLLSTLGRLAL-KNKLWGKASEALEAALKLRPS-ASDYAELADALDQ-LGEPEEAEQVR 384 (400)
T ss_pred CCchHHHHHHHHHHHhCCCChhHHHHHHHHHH-HhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHH-cCChHHHHHHH
Confidence 46788888999999999999999999996555 689999999999999999884 5556678877766 99999999999
Q ss_pred HHHHHh
Q 027439 213 DQAVKA 218 (223)
Q Consensus 213 ekAL~l 218 (223)
+.++.+
T Consensus 385 ~e~L~~ 390 (400)
T COG3071 385 REALLL 390 (400)
T ss_pred HHHHHH
Confidence 999855
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.06 E-value=0.00091 Score=59.18 Aligned_cols=83 Identities=20% Similarity=0.223 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHH
Q 027439 134 GNNSTDLYYQKMIQAD--PRN----PLLLSNYARFLKEAR-GDLLKAEEYCARAILMSPN--D----GNVLSMYGDLIWQ 200 (223)
Q Consensus 134 d~~eA~~~y~~aLeld--P~n----~~~l~nlA~~l~~~~-gdyeeA~~~~ekAL~ldP~--d----~~~l~~lA~ll~~ 200 (223)
++++|+.+|++++++. -++ +.++.++|.++. .. +++++|+++|++|+++... . ...+..+|.++..
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye-~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYE-EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR 167 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC-CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 6777777777777652 222 345666674443 34 6888888888888776321 1 2344556655555
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 027439 201 SHKDASRAESYFDQAVKA 218 (223)
Q Consensus 201 ~~G~~eeAi~~fekAL~l 218 (223)
.++|++|+..|+++...
T Consensus 168 -l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 168 -LGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp -TT-HHHHHHHHHHHHHT
T ss_pred -hCCHHHHHHHHHHHHHH
Confidence 77888888888877654
No 181
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.011 Score=53.22 Aligned_cols=88 Identities=17% Similarity=0.137 Sum_probs=73.1
Q ss_pred CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHH--------------------------------
Q 027439 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCA-------------------------------- 178 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~e-------------------------------- 178 (223)
..+++.+|...|..++..+|.+..+...|+.++.. .|+.+.|...+.
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~-~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~ 224 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLA-AGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD 224 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH-cCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 45799999999999999999999999999977764 677766555443
Q ss_pred --HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 027439 179 --RAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAP 220 (223)
Q Consensus 179 --kAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~P 220 (223)
+.+..+|+|.++.+.+|..+.. .|+.++|.+.+-..+..+.
T Consensus 225 l~~~~aadPdd~~aa~~lA~~~~~-~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 225 LQRRLAADPDDVEAALALADQLHL-VGRNEAALEHLLALLRRDR 267 (304)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcc
Confidence 3445689999999999988777 9999999999988887753
No 182
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.95 E-value=0.0079 Score=53.14 Aligned_cols=90 Identities=20% Similarity=0.230 Sum_probs=69.8
Q ss_pred CCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHc---
Q 027439 132 NHGNNSTDLYYQKMIQADPRNP---LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV---LSMYGDLIWQSH--- 202 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~n~---~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~---l~~lA~ll~~~~--- 202 (223)
.|++++|+..|+.+....|..+ .+...++.+++ +.++|++|+...++.+.+.|+++++ ++..+...+...
T Consensus 47 ~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y-k~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~ 125 (254)
T COG4105 47 KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY-KNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDV 125 (254)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcc
Confidence 5899999999999999988774 67778887777 5899999999999999999987654 444443333211
Q ss_pred -CC---HHHHHHHHHHHHHhCCCC
Q 027439 203 -KD---ASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 203 -G~---~eeAi~~fekAL~l~Pdn 222 (223)
.| ..+|+..|+..++..|+.
T Consensus 126 ~rDq~~~~~A~~~f~~~i~ryPnS 149 (254)
T COG4105 126 TRDQSAARAAFAAFKELVQRYPNS 149 (254)
T ss_pred ccCHHHHHHHHHHHHHHHHHCCCC
Confidence 22 337888889999998874
No 183
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.89 E-value=0.0054 Score=59.35 Aligned_cols=66 Identities=24% Similarity=0.209 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 155 LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 155 ~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
+++.+|.++. ..|++++|++++++||+..|..++.+...|.++-. .|++++|..+++.|-.+|+.|
T Consensus 196 ~~~~lAqhyd-~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh-~G~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 196 TLYFLAQHYD-YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH-AGDLKEAAEAMDEARELDLAD 261 (517)
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhCChhh
Confidence 4456675444 68999999999999999999999999999987766 999999999999999998765
No 184
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.82 E-value=0.0026 Score=37.76 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 027439 154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPND 187 (223)
Q Consensus 154 ~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d 187 (223)
.+|..+|.++. .++++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYE-QLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCC
Confidence 56889996666 5899999999999999999954
No 185
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.0015 Score=60.65 Aligned_cols=94 Identities=12% Similarity=0.067 Sum_probs=65.5
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHH--------------HhCCC-----
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAI--------------LMSPN----- 186 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL--------------~ldP~----- 186 (223)
+.+|...|||++|...|..+.+.+.-+..++.++| +++..+|.|.+|...-.+|- +++..
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLA-cc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLA-CCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccCCCCcccchhHH-HHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 35667778999999999999888888888889999 44445889988877655432 12110
Q ss_pred -------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439 187 -------DGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD 221 (223)
Q Consensus 187 -------d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd 221 (223)
..+-...+|.+.|. .-.|++|++.|++++.-+|+
T Consensus 143 fh~~LqD~~EdqLSLAsvhYm-R~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYM-RMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHH-HHHHHHHHHHHHHHHhcChh
Confidence 01112335555666 56788999999999887764
No 186
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.80 E-value=0.015 Score=47.21 Aligned_cols=68 Identities=15% Similarity=0.094 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 153 ~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d---~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
+..+.+-|.... ..++|.+|++.|+.+....|-. ..+...++.++++ .+++++|+..+++-++++|.+
T Consensus 10 ~~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 10 PQELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred HHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCC
Confidence 445566675555 4799999999999999988764 5778889999999 999999999999999999975
No 187
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.75 E-value=0.0052 Score=60.10 Aligned_cols=91 Identities=20% Similarity=0.169 Sum_probs=78.9
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439 130 PNNHGNNSTDLYYQKMIQADPRNPLL-LSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208 (223)
Q Consensus 130 ~~~gd~~eA~~~y~~aLeldP~n~~~-l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA 208 (223)
...|+...|++|+..|+-..|....+ +.++|..+.. -+-...|-.++.+++.++-..|-.++.+|.+++. +++.+.|
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~-~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~-l~~i~~a 695 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIH-YGLHLDATKLLLQALAINSSEPLTFLSLGNAYLA-LKNISGA 695 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHH-hhhhccHHHHHHHHHhhcccCchHHHhcchhHHH-HhhhHHH
Confidence 34568899999999999999876543 5688877764 6778899999999999998889999999998888 9999999
Q ss_pred HHHHHHHHHhCCCC
Q 027439 209 ESYFDQAVKAAPDD 222 (223)
Q Consensus 209 i~~fekAL~l~Pdn 222 (223)
++.|++|++++|++
T Consensus 696 ~~~~~~a~~~~~~~ 709 (886)
T KOG4507|consen 696 LEAFRQALKLTTKC 709 (886)
T ss_pred HHHHHHHHhcCCCC
Confidence 99999999999875
No 188
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.74 E-value=0.0066 Score=60.02 Aligned_cols=90 Identities=8% Similarity=-0.037 Sum_probs=69.7
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~ 204 (223)
-.+.|.+.|++++|.+.++++ ...| +..+|..+...+. ..++++.|...++++++++|++...+..+.+++.. .|+
T Consensus 468 li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~-~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~-~G~ 543 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACR-IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS-SGR 543 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHH-HcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHh-CCC
Confidence 334455667888888888764 2334 3566777776666 47899999999999999999988888888887777 999
Q ss_pred HHHHHHHHHHHHHh
Q 027439 205 ASRAESYFDQAVKA 218 (223)
Q Consensus 205 ~eeAi~~fekAL~l 218 (223)
+++|.+.+++..+.
T Consensus 544 ~~~A~~v~~~m~~~ 557 (697)
T PLN03081 544 QAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999887654
No 189
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.0042 Score=55.69 Aligned_cols=90 Identities=16% Similarity=0.220 Sum_probs=71.2
Q ss_pred CCCChHHHHHHHHHHHHh----C--CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439 131 NNHGNNSTDLYYQKMIQA----D--PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLel----d--P~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~ 204 (223)
+.||.+.|..+|+++-+. + .++..++.+.+ +++...++|..|...|.+.+..||.++.+..+.|- +....|+
T Consensus 224 Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a-~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKAL-cllYlg~ 301 (366)
T KOG2796|consen 224 QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA-FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKAL-CLLYLGK 301 (366)
T ss_pred hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh-hheecccchHHHHHHHhhccccCCCchhhhchHHH-HHHHHHH
Confidence 346888899998854433 2 34456677777 66667889999999999999999999999888884 4445899
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 027439 205 ASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 205 ~eeAi~~fekAL~l~Pdn 222 (223)
..+|++.++++++..|..
T Consensus 302 l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 302 LKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHhccCCcc
Confidence 999999999999998864
No 190
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.68 E-value=0.0036 Score=59.12 Aligned_cols=96 Identities=11% Similarity=0.018 Sum_probs=73.7
Q ss_pred CCCCccccccCCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCC--CH
Q 027439 121 GDGRWGSWDPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILM----SPN--DG 188 (223)
Q Consensus 121 ~~~~gg~~Y~~~gd~~eA~~~y~~aLeldP~n------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l----dP~--d~ 188 (223)
.+|.-|..|.-.|||++|+..-+.-+++.... -.++.|+|+++.. +++|+.|+++|.+++.+ ... .+
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif-lg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF-LGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh-hcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 35556777888899999999988877764332 3568899977775 89999999999987554 332 34
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439 189 NVLSMYGDLIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 189 ~~l~~lA~ll~~~~G~~eeAi~~fekAL~l 218 (223)
...+.+|+.++. ..++++|++|+++-|++
T Consensus 276 QscYSLgNtytl-l~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 276 QSCYSLGNTYTL-LKEVQKAITYHQRHLAI 304 (639)
T ss_pred HHHHHhhhHHHH-HHHHHHHHHHHHHHHHH
Confidence 456778888888 89999999999997765
No 191
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.64 E-value=0.012 Score=59.60 Aligned_cols=88 Identities=13% Similarity=0.035 Sum_probs=77.0
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 027439 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~ 211 (223)
.++|.+|.+...+.++..|+...+..--|..+. ++|++++|..+++..-...++|...+..+-.++.. .+++++|...
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~-r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d-~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLF-RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD-LGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH-HhhhhHHHHH
Confidence 368999999999999999999888777774455 78999999988888888889999999888866666 9999999999
Q ss_pred HHHHHHhCCC
Q 027439 212 FDQAVKAAPD 221 (223)
Q Consensus 212 fekAL~l~Pd 221 (223)
|+++++.+|+
T Consensus 100 Ye~~~~~~P~ 109 (932)
T KOG2053|consen 100 YERANQKYPS 109 (932)
T ss_pred HHHHHhhCCc
Confidence 9999999986
No 192
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.016 Score=56.58 Aligned_cols=86 Identities=13% Similarity=0.102 Sum_probs=63.7
Q ss_pred CCCChHHHHHHHHHHHHhCCCCHHHHH---------------------------------HHHHHHHHHhCCHHHHHHHH
Q 027439 131 NNHGNNSTDLYYQKMIQADPRNPLLLS---------------------------------NYARFLKEARGDLLKAEEYC 177 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLeldP~n~~~l~---------------------------------nlA~~l~~~~gdyeeA~~~~ 177 (223)
.+++|++|++...+.+...|++..++. .-|++.| +++..++|+..+
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Y-rlnk~Dealk~~ 102 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEY-RLNKLDEALKTL 102 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHH-HcccHHHHHHHH
Confidence 467899999999999999888765432 2333333 355556666555
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439 178 ARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD 221 (223)
Q Consensus 178 ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd 221 (223)
+ -.++.+..++...|-++|+ +++|++|++.|+..++.+-+
T Consensus 103 ~---~~~~~~~~ll~L~AQvlYr-l~~ydealdiY~~L~kn~~d 142 (652)
T KOG2376|consen 103 K---GLDRLDDKLLELRAQVLYR-LERYDEALDIYQHLAKNNSD 142 (652)
T ss_pred h---cccccchHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCc
Confidence 5 3467777788899999999 99999999999999876543
No 193
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.57 E-value=0.0065 Score=55.56 Aligned_cols=63 Identities=16% Similarity=0.357 Sum_probs=39.5
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGD 196 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ 196 (223)
|+.++|..+|+.|++++|.++.++..+|.+.- +.++.-+|-++|-+|+.++|.+..++.+.+.
T Consensus 130 Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E-~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 130 GKLEKAMTLFEHALALAPTNPQILIEMGQFRE-MHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHH-hhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 55666666666666666666666666664444 3466666666666666666666666555443
No 194
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.56 E-value=0.0053 Score=56.85 Aligned_cols=62 Identities=15% Similarity=0.103 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 027439 156 LSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAA 219 (223)
Q Consensus 156 l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~ 219 (223)
+-..|+-++ ++|.|++|+.+|.+++.++|.|+..+.+.|.+|++ .++|..|...++.|+.++
T Consensus 100 iKE~GN~yF-KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk-~K~FA~AE~DC~~AiaLd 161 (536)
T KOG4648|consen 100 IKERGNTYF-KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK-QKSFAQAEEDCEAAIALD 161 (536)
T ss_pred HHHhhhhhh-hccchhHHHHHhhhhhccCCCCccchhhHHHHHHH-HHHHHHHHHhHHHHHHhh
Confidence 346676666 58999999999999999999999999999988887 999999999999998876
No 195
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.51 E-value=0.016 Score=54.03 Aligned_cols=88 Identities=17% Similarity=0.138 Sum_probs=72.5
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 027439 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE 209 (223)
Q Consensus 130 ~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi 209 (223)
...++.++|.+..+++++..-+.- ....++ .+ +-+++.+-++..++.++..|+++..+..+|.++++ ++.+.+|.
T Consensus 274 i~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~-~l--~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k-~~~w~kA~ 348 (400)
T COG3071 274 IRLGDHDEAQEIIEDALKRQWDPR-LCRLIP-RL--RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK-NKLWGKAS 348 (400)
T ss_pred HHcCChHHHHHHHHHHHHhccChh-HHHHHh-hc--CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH-hhHHHHHH
Confidence 345789999999999998765544 222233 22 35899999999999999999999999999999998 99999999
Q ss_pred HHHHHHHHhCCCC
Q 027439 210 SYFDQAVKAAPDD 222 (223)
Q Consensus 210 ~~fekAL~l~Pdn 222 (223)
.+|+.|+...|+.
T Consensus 349 ~~leaAl~~~~s~ 361 (400)
T COG3071 349 EALEAALKLRPSA 361 (400)
T ss_pred HHHHHHHhcCCCh
Confidence 9999999987763
No 196
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.49 E-value=0.006 Score=35.62 Aligned_cols=31 Identities=26% Similarity=0.390 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439 190 VLSMYGDLIWQSHKDASRAESYFDQAVKAAPD 221 (223)
Q Consensus 190 ~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd 221 (223)
+++.+|.++.. .|++++|+.+|+++++..|+
T Consensus 2 a~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYK-LGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHH-HCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHH-ccCHHHHHHHHHHHHHHCcC
Confidence 34455544444 55555555555555555554
No 197
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.012 Score=54.43 Aligned_cols=85 Identities=15% Similarity=0.104 Sum_probs=67.0
Q ss_pred ccCCCChHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439 129 DPNNHGNNSTDLYYQKMIQA-DPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (223)
Q Consensus 129 Y~~~gd~~eA~~~y~~aLel-dP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~ 204 (223)
|+.+|+...-...+++.+-. +|+- ..+...|+ |.....|-|++|++..++|+++||.|..+....+-++-. +++
T Consensus 147 ~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gmya-FgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem-~~r 224 (491)
T KOG2610|consen 147 HFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYA-FGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEM-NGR 224 (491)
T ss_pred HHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHH-hhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHh-cch
Confidence 34456666677777777765 5555 56677777 544458999999999999999999999999999977776 999
Q ss_pred HHHHHHHHHHH
Q 027439 205 ASRAESYFDQA 215 (223)
Q Consensus 205 ~eeAi~~fekA 215 (223)
+.++.+++++-
T Consensus 225 ~Keg~eFM~~t 235 (491)
T KOG2610|consen 225 HKEGKEFMYKT 235 (491)
T ss_pred hhhHHHHHHhc
Confidence 99999888764
No 198
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.48 E-value=0.016 Score=51.43 Aligned_cols=65 Identities=29% Similarity=0.313 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 156 LSNYARFLKEARGDLLKAEEYCARAILMSPND---GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 156 l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d---~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
.++.|.-++ ..++|..|+..|..-+...|+. +++++.||.++|. +|++++|...|.++++..|+.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg~y~~Aa~~f~~~~k~~P~s 211 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QGDYEDAAYIFARVVKDYPKS 211 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cccchHHHHHHHHHHHhCCCC
Confidence 445564555 3799999999999999999986 5889999999999 999999999999999988764
No 199
>PLN03077 Protein ECB2; Provisional
Probab=96.48 E-value=0.016 Score=58.65 Aligned_cols=80 Identities=10% Similarity=0.045 Sum_probs=36.8
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF 212 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~f 212 (223)
|++++|.++++++ ...|+ +.+|..+-..+. ..++.+.|+...+++++++|++...+..+++++.. .|++++|.+..
T Consensus 639 G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~-~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~-~g~~~~a~~vr 714 (857)
T PLN03077 639 GKLTEAYNFINKM-PITPD-PAVWGALLNACR-IHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD-AGKWDEVARVR 714 (857)
T ss_pred CCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHH-HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH-CCChHHHHHHH
Confidence 3444444444433 12232 333333333333 23444555555555555555555555555554444 55555555555
Q ss_pred HHHH
Q 027439 213 DQAV 216 (223)
Q Consensus 213 ekAL 216 (223)
+..-
T Consensus 715 ~~M~ 718 (857)
T PLN03077 715 KTMR 718 (857)
T ss_pred HHHH
Confidence 4443
No 200
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.46 E-value=0.0086 Score=57.96 Aligned_cols=89 Identities=22% Similarity=0.134 Sum_probs=77.3
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA--RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES 210 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~--~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~ 210 (223)
.....|+..|.+++..-|....++.++|.++..+ .++.-.|+.-|..|+++||-...+++.++.+++. .+++.+|+.
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e-l~r~~eal~ 466 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE-LTRYLEALS 466 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH-HhhHHHhhh
Confidence 3566799999999999999999999999776643 2677889999999999999999999999999998 999999998
Q ss_pred HHHHHHHhCCCC
Q 027439 211 YFDQAVKAAPDD 222 (223)
Q Consensus 211 ~fekAL~l~Pdn 222 (223)
.-..+...+|.|
T Consensus 467 ~~~alq~~~Ptd 478 (758)
T KOG1310|consen 467 CHWALQMSFPTD 478 (758)
T ss_pred hHHHHhhcCchh
Confidence 887777777743
No 201
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.38 E-value=0.054 Score=49.08 Aligned_cols=82 Identities=12% Similarity=0.108 Sum_probs=50.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439 140 LYYQKMIQADPRNPLLLSNYARFLKEARG-----------DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208 (223)
Q Consensus 140 ~~y~~aLeldP~n~~~l~nlA~~l~~~~g-----------dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA 208 (223)
.-|++.++.+|.|..+|..+..+--.... -.+..+.+|++|++.+|++..++..|-.++.+ .-+.++.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~-~~~~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEK-VWDSEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHH
Confidence 45666677777777777777644321110 13455666777777777777666666655555 5566666
Q ss_pred HHHHHHHHHhCCCC
Q 027439 209 ESYFDQAVKAAPDD 222 (223)
Q Consensus 209 i~~fekAL~l~Pdn 222 (223)
...+++++..+|++
T Consensus 85 ~~~we~~l~~~~~~ 98 (321)
T PF08424_consen 85 AKKWEELLFKNPGS 98 (321)
T ss_pred HHHHHHHHHHCCCC
Confidence 67777777766654
No 202
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.36 E-value=0.032 Score=58.41 Aligned_cols=86 Identities=15% Similarity=0.070 Sum_probs=39.1
Q ss_pred ccCCCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcC
Q 027439 129 DPNNHGNNSTDLYYQKMIQA----DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS-PNDGNVLSMYGDLIWQSHK 203 (223)
Q Consensus 129 Y~~~gd~~eA~~~y~~aLel----dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld-P~d~~~l~~lA~ll~~~~G 203 (223)
|.+.+++++|.+.|+++.+. .|+ ..+++.+...+. +.|++++|.++|++..+.+ +.+..++..+...+.+ .|
T Consensus 552 ~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~-k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k-~G 628 (1060)
T PLN03218 552 CGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACA-NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ-KG 628 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-cC
Confidence 33444555555555555432 233 233333332333 3455555555555555543 2233444444433443 55
Q ss_pred CHHHHHHHHHHHHH
Q 027439 204 DASRAESYFDQAVK 217 (223)
Q Consensus 204 ~~eeAi~~fekAL~ 217 (223)
++++|+..|++..+
T Consensus 629 ~~deAl~lf~eM~~ 642 (1060)
T PLN03218 629 DWDFALSIYDDMKK 642 (1060)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555554443
No 203
>PRK10941 hypothetical protein; Provisional
Probab=96.36 E-value=0.018 Score=51.31 Aligned_cols=56 Identities=18% Similarity=0.109 Sum_probs=38.1
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 166 ~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
+.+++++|..+.++.+.++|+++.-+...|.++.+ .+.+..|+.-++.-++.-|++
T Consensus 193 ~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q-L~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 193 EEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ-LDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCCc
Confidence 46677777777777777777777666667755444 777777777777777666653
No 204
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.31 E-value=0.0073 Score=55.25 Aligned_cols=56 Identities=21% Similarity=0.383 Sum_probs=51.4
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 166 ~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
+.|+.++|..+|+.|+.+.|++++++..+|.+.-. .++.-+|-.+|-|||.++|.|
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~n 183 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGN 183 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCc
Confidence 47999999999999999999999999999966555 889999999999999999976
No 205
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.04 Score=49.33 Aligned_cols=86 Identities=19% Similarity=0.190 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH-HHHH
Q 027439 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA-ESYF 212 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA-i~~f 212 (223)
.+..|.-+|++.-+..|-++..++..|.+.. .+++|++|+..++.|+.-++++++++.++-.+... .|...++ .+++
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l-~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~-~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHL-QLGRYEEAESLLEEALDKDAKDPETLANLIVLALH-LGKDAEVTERNL 265 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHH-HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCChHHHHHHH
Confidence 4677777777777777777777777774444 57888888888888888888888888888766555 5544433 3344
Q ss_pred HHHHHhCCC
Q 027439 213 DQAVKAAPD 221 (223)
Q Consensus 213 ekAL~l~Pd 221 (223)
.+.....|+
T Consensus 266 ~QLk~~~p~ 274 (299)
T KOG3081|consen 266 SQLKLSHPE 274 (299)
T ss_pred HHHHhcCCc
Confidence 444444444
No 206
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.27 E-value=0.06 Score=40.13 Aligned_cols=76 Identities=13% Similarity=0.001 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027439 138 TDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND--GNVLSMYGDLIWQSHKDASRAESYFDQA 215 (223)
Q Consensus 138 A~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d--~~~l~~lA~ll~~~~G~~eeAi~~fekA 215 (223)
.+..+++.++.+|+|..+...+|..+. ..|++++|++.+-.++..++++ ..+...+-.++-. .|.-+.-...|++-
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~-~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~-lg~~~plv~~~RRk 84 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALL-AAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFEL-LGPGDPLVSEYRRK 84 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH-H-TT-HHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHH-cCCCChHHHHHHHH
Confidence 467789999999999999999997666 5899999999999999998765 5565555544444 67644444444443
No 207
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.26 E-value=0.01 Score=51.38 Aligned_cols=67 Identities=16% Similarity=0.020 Sum_probs=58.4
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027439 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL 197 (223)
Q Consensus 130 ~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l 197 (223)
.+.+.++.|+.-+.++|+++|.+..++.++| .+|.....|++|++-|.+.++.+|..-.+.-..+.+
T Consensus 145 iKl~k~e~aI~dcsKaiel~pty~kAl~RRA-eayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 145 IKLRKWESAIEDCSKAIELNPTYEKALERRA-EAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHhhhHHHHHHHHHhhHhcCchhHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 3457899999999999999999999999999 566678999999999999999999988777665554
No 208
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.014 Score=54.36 Aligned_cols=83 Identities=12% Similarity=-0.038 Sum_probs=66.3
Q ss_pred CCCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 027439 131 NNHGNNSTDLYYQKMIQADPRNP-LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAE 209 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLeldP~n~-~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi 209 (223)
.+.||..|+.+++-....+.... .+-..+|.+++ ++|+|++|...|+-+..-+.-+..++.++|-+++- +|.|.+|.
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~f-hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy-Lg~Y~eA~ 111 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF-HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY-LGQYIEAK 111 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHH-hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHH-HHHHHHHH
Confidence 45799999999998887665443 44455664444 69999999999999999877788999999966666 99999999
Q ss_pred HHHHHH
Q 027439 210 SYFDQA 215 (223)
Q Consensus 210 ~~fekA 215 (223)
..-.+|
T Consensus 112 ~~~~ka 117 (557)
T KOG3785|consen 112 SIAEKA 117 (557)
T ss_pred HHHhhC
Confidence 887765
No 209
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.22 E-value=0.0098 Score=36.44 Aligned_cols=25 Identities=40% Similarity=0.639 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Q 027439 156 LSNYARFLKEARGDLLKAEEYCARAI 181 (223)
Q Consensus 156 l~nlA~~l~~~~gdyeeA~~~~ekAL 181 (223)
+.++|.++. ..|+|++|+.+|++++
T Consensus 2 l~~Lg~~~~-~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYR-QQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHH-HCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence 344443333 3455555555555533
No 210
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.17 E-value=0.017 Score=57.05 Aligned_cols=86 Identities=8% Similarity=-0.058 Sum_probs=50.7
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCC
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM--SPNDGNVLSMYGDLIWQSHKD 204 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l--dP~d~~~l~~lA~ll~~~~G~ 204 (223)
+.|.+.|++++|.+.|+++ .+.|..+|+.+...+. +.|++++|+++|++.... .| |...+..+..++.. .|+
T Consensus 267 ~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~-~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~-~g~ 340 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYA-LHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSR-LAL 340 (697)
T ss_pred HHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh-ccc
Confidence 3456667777777777654 3345666666664444 467777777777766553 23 33344444444444 666
Q ss_pred HHHHHHHHHHHHHh
Q 027439 205 ASRAESYFDQAVKA 218 (223)
Q Consensus 205 ~eeAi~~fekAL~l 218 (223)
+++|...++.+++.
T Consensus 341 ~~~a~~i~~~m~~~ 354 (697)
T PLN03081 341 LEHAKQAHAGLIRT 354 (697)
T ss_pred hHHHHHHHHHHHHh
Confidence 66666666665554
No 211
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.17 E-value=0.04 Score=52.63 Aligned_cols=85 Identities=20% Similarity=0.157 Sum_probs=70.6
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHH
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG----NVLSMYGDLIWQSHKDASRA 208 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~----~~l~~lA~ll~~~~G~~eeA 208 (223)
.+.+.|.+++++..+..|+.+..+...|+.+. .+++.++|++.+++++.....-+ -.++-+++.+.. +.++++|
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~-~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLER-LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-QHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-HchHHHH
Confidence 47899999999999999999999999997777 58999999999999996544333 235566766666 8999999
Q ss_pred HHHHHHHHHhC
Q 027439 209 ESYFDQAVKAA 219 (223)
Q Consensus 209 i~~fekAL~l~ 219 (223)
..+|.+.++.+
T Consensus 325 ~~~f~~L~~~s 335 (468)
T PF10300_consen 325 AEYFLRLLKES 335 (468)
T ss_pred HHHHHHHHhcc
Confidence 99999998754
No 212
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.17 E-value=0.022 Score=54.75 Aligned_cols=92 Identities=18% Similarity=0.289 Sum_probs=79.8
Q ss_pred cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 027439 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (223)
Q Consensus 128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee 207 (223)
+-++++++..|...|++|+..+-.|..+|..|+.+-. +++....|...+.+|+.+=|.-...|+.|..+ -..+|+..-
T Consensus 82 wEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Em-knk~vNhARNv~dRAvt~lPRVdqlWyKY~ym-EE~LgNi~g 159 (677)
T KOG1915|consen 82 WEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEM-KNKQVNHARNVWDRAVTILPRVDQLWYKYIYM-EEMLGNIAG 159 (677)
T ss_pred HHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH-hhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH-HHHhcccHH
Confidence 4456789999999999999999999999999996655 57899999999999999999988889888844 444899999
Q ss_pred HHHHHHHHHHhCCC
Q 027439 208 AESYFDQAVKAAPD 221 (223)
Q Consensus 208 Ai~~fekAL~l~Pd 221 (223)
|...|++=+...|+
T Consensus 160 aRqiferW~~w~P~ 173 (677)
T KOG1915|consen 160 ARQIFERWMEWEPD 173 (677)
T ss_pred HHHHHHHHHcCCCc
Confidence 99999998887775
No 213
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.17 E-value=0.025 Score=54.32 Aligned_cols=88 Identities=19% Similarity=0.261 Sum_probs=72.2
Q ss_pred CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHcCCHHHH
Q 027439 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN--VLSMYGDLIWQSHKDASRA 208 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~--~l~~lA~ll~~~~G~~eeA 208 (223)
+.++++...++|++-|+..|.|-.+|..+|. +-..+|+.+.|..+|+-|+....-+.. +|..|-++-.. .+.+++|
T Consensus 449 qL~efDRcRkLYEkfle~~Pe~c~~W~kyaE-lE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~-~~E~eka 526 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLEFSPENCYAWSKYAE-LETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIE-EGEFEKA 526 (677)
T ss_pred HHhhHHHHHHHHHHHHhcChHhhHHHHHHHH-HHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhh-cchHHHH
Confidence 3578999999999999999999999999994 444689999999999999997544432 34444444556 8999999
Q ss_pred HHHHHHHHHhCC
Q 027439 209 ESYFDQAVKAAP 220 (223)
Q Consensus 209 i~~fekAL~l~P 220 (223)
..+|++.|+..+
T Consensus 527 R~LYerlL~rt~ 538 (677)
T KOG1915|consen 527 RALYERLLDRTQ 538 (677)
T ss_pred HHHHHHHHHhcc
Confidence 999999998765
No 214
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.17 E-value=0.023 Score=54.57 Aligned_cols=85 Identities=14% Similarity=0.096 Sum_probs=65.1
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---------------------C----
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN---------------------D---- 187 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~---------------------d---- 187 (223)
.+..+.+++-++|++++|+.+.+|.-+|. +......+|+++|+||++.... +
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAE---EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~ 258 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAE---EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL 258 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhccc---ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence 57888999999999999999999877773 1123567888888887774210 1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439 188 GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD 221 (223)
Q Consensus 188 ~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd 221 (223)
..+...+|.++++ .|+.++|++.|+..++.+|.
T Consensus 259 ~y~KrRLAmCark-lGr~~EAIk~~rdLlke~p~ 291 (539)
T PF04184_consen 259 VYAKRRLAMCARK-LGRLREAIKMFRDLLKEFPN 291 (539)
T ss_pred hhhHHHHHHHHHH-hCChHHHHHHHHHHHhhCCc
Confidence 3345667877777 99999999999999988875
No 215
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.15 E-value=0.0095 Score=32.62 Aligned_cols=31 Identities=32% Similarity=0.402 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 027439 155 LLSNYARFLKEARGDLLKAEEYCARAILMSPN 186 (223)
Q Consensus 155 ~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~ 186 (223)
++.++|.++. ..+++++|+.+++++++++|+
T Consensus 3 ~~~~~a~~~~-~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYL-KLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHH-HHhhHHHHHHHHHHHHccCCC
Confidence 3445553333 345555555555555555553
No 216
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.15 E-value=0.053 Score=56.77 Aligned_cols=91 Identities=10% Similarity=0.004 Sum_probs=68.2
Q ss_pred ccccccCCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHH
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQA--DPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL----MSPNDGNVLSMYGDLI 198 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLel--dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~----ldP~d~~~l~~lA~ll 198 (223)
--+.|.+.+++++|..+|+++.+. .|+ ..+|+.+...+. +.+++++|.+++++... +.|+ ..++..+...+
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~-k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay 589 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACG-QSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKAC 589 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHH
Confidence 345566778999999999998765 354 666777775666 57999999999998876 3454 55666666666
Q ss_pred HHHcCCHHHHHHHHHHHHHhC
Q 027439 199 WQSHKDASRAESYFDQAVKAA 219 (223)
Q Consensus 199 ~~~~G~~eeAi~~fekAL~l~ 219 (223)
.+ .|++++|++.|+++.+.+
T Consensus 590 ~k-~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 590 AN-AGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HH-CCCHHHHHHHHHHHHHcC
Confidence 66 899999999999888764
No 217
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.15 E-value=0.041 Score=51.26 Aligned_cols=93 Identities=14% Similarity=0.134 Sum_probs=72.9
Q ss_pred ccCCCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHH---hCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHH--
Q 027439 129 DPNNHGNNSTDLYYQKMIQA----DPRNPLLLSNYARFLKEA---RGDLLKAEEYCAR-AILMSPNDGNVLSMYGDLI-- 198 (223)
Q Consensus 129 Y~~~gd~~eA~~~y~~aLel----dP~n~~~l~nlA~~l~~~---~gdyeeA~~~~ek-AL~ldP~d~~~l~~lA~ll-- 198 (223)
|...+||+.-+.+.+.+-.+ -++...+...||-++. + .|+.++|+..+.. .....+.+++++..+|.++
T Consensus 151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALn-Rrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALN-RRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD 229 (374)
T ss_pred hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHh-hcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 44567999999999887777 5667778888885565 5 6899999999999 5556678999999999873
Q ss_pred -HHH-----cCCHHHHHHHHHHHHHhCCCC
Q 027439 199 -WQS-----HKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 199 -~~~-----~G~~eeAi~~fekAL~l~Pdn 222 (223)
|.. ....++|+.+|.|+.+++|+-
T Consensus 230 ~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 230 LFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 332 224779999999999999764
No 218
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.13 E-value=0.024 Score=46.12 Aligned_cols=57 Identities=23% Similarity=0.271 Sum_probs=51.2
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 027439 162 FLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAP 220 (223)
Q Consensus 162 ~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~P 220 (223)
.+.+ -++.+.|++.|.+++.+-|..+.++.+.|..+.. +|+.++|++-+++|+++.-
T Consensus 52 alaE-~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~~~e~ALdDLn~AleLag 108 (175)
T KOG4555|consen 52 ALAE-AGDLDGALELFGQALCLAPERASAYNNRAQALRL-QGDDEEALDDLNKALELAG 108 (175)
T ss_pred HHHh-ccchHHHHHHHHHHHHhcccchHhhccHHHHHHH-cCChHHHHHHHHHHHHhcC
Confidence 3443 6999999999999999999999999999988777 9999999999999998853
No 219
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.13 E-value=0.01 Score=52.03 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=69.7
Q ss_pred ccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439 129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208 (223)
Q Consensus 129 Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA 208 (223)
+-..++|+.|.+.|+-.+++||.+-.++.|+|..+|. -|+|+-|.+-+.+....||+||.-- .+- .+....-+..+|
T Consensus 109 l~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~gR~~LAq~d~~~fYQ~D~~DPfR~-LWL-Yl~E~k~dP~~A 185 (297)
T COG4785 109 LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRYKLAQDDLLAFYQDDPNDPFRS-LWL-YLNEQKLDPKQA 185 (297)
T ss_pred HHhcccchHHHHHhhhHhccCCcchHHHhccceeeee-cCchHhhHHHHHHHHhcCCCChHHH-HHH-HHHHhhCCHHHH
Confidence 3445899999999999999999999999999988875 6999999999999999999998321 111 123335677788
Q ss_pred HHHHH-HHHHhCCCCC
Q 027439 209 ESYFD-QAVKAAPDDW 223 (223)
Q Consensus 209 i~~fe-kAL~l~Pdn~ 223 (223)
...+. ++...+.+.|
T Consensus 186 ~tnL~qR~~~~d~e~W 201 (297)
T COG4785 186 KTNLKQRAEKSDKEQW 201 (297)
T ss_pred HHHHHHHHHhccHhhh
Confidence 76654 4544454444
No 220
>PLN03077 Protein ECB2; Provisional
Probab=96.13 E-value=0.035 Score=56.20 Aligned_cols=86 Identities=15% Similarity=0.152 Sum_probs=38.3
Q ss_pred CChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 027439 133 HGNNSTDLYYQKMIQADP--RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES 210 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP--~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~ 210 (223)
|++++|..+|+++.+..+ -+...+..+...+. +.|++++|++++++. .+.| |..+|..+-..+.. .++.+.|..
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~-r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~-~~~~e~~e~ 678 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG-RAGKLTEAYNFINKM-PITP-DPAVWGALLNACRI-HRHVELGEL 678 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH-hCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHH-cCChHHHHH
Confidence 344444444444442211 11233444443222 345555555555443 2334 23344444434433 555555555
Q ss_pred HHHHHHHhCCCC
Q 027439 211 YFDQAVKAAPDD 222 (223)
Q Consensus 211 ~fekAL~l~Pdn 222 (223)
..+++++++|++
T Consensus 679 ~a~~l~~l~p~~ 690 (857)
T PLN03077 679 AAQHIFELDPNS 690 (857)
T ss_pred HHHHHHhhCCCC
Confidence 555556666654
No 221
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.13 E-value=0.018 Score=42.92 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439 173 AEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD 221 (223)
Q Consensus 173 A~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd 221 (223)
.+..++++++.+|+|..+.+.+|..+.. .|++++|++.+..+++.+++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~-~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLA-AGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-TT
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcc
Confidence 4567899999999999999999988887 99999999999999988765
No 222
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.12 E-value=0.031 Score=37.82 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027439 155 LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG 195 (223)
Q Consensus 155 ~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA 195 (223)
.++.+|..++ +.++|++|..+++++++++|+|..+.....
T Consensus 3 ~lY~lAig~y-kl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 3 CLYYLAIGHY-KLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHH-HTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 3456665555 689999999999999999999998876555
No 223
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.05 E-value=0.044 Score=46.89 Aligned_cols=87 Identities=13% Similarity=0.124 Sum_probs=66.1
Q ss_pred CCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439 132 NHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA 208 (223)
.+++++|+..++.++...-+. ..+-.++|+++.. ++.+++|...+.....-+- .+.+....|+++.. .|+-++|
T Consensus 102 ~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q-~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~-kg~k~~A 178 (207)
T COG2976 102 ANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ-QKKADAALKTLDTIKEESW-AAIVAELRGDILLA-KGDKQEA 178 (207)
T ss_pred hccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH-hhhHHHHHHHHhccccccH-HHHHHHHhhhHHHH-cCchHHH
Confidence 478999999999988653332 3556788887775 8999999988876554221 23445678888888 9999999
Q ss_pred HHHHHHHHHhCCC
Q 027439 209 ESYFDQAVKAAPD 221 (223)
Q Consensus 209 i~~fekAL~l~Pd 221 (223)
+..|+++++.+++
T Consensus 179 r~ay~kAl~~~~s 191 (207)
T COG2976 179 RAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHHHccCC
Confidence 9999999998654
No 224
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.00 E-value=0.038 Score=55.69 Aligned_cols=90 Identities=11% Similarity=0.055 Sum_probs=68.5
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPRNP-----LLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMYG 195 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~-----~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d------~~~l~~lA 195 (223)
..+...+++++|..+++++++..+... .++..++.++. ..|++++|..++++++...... ..++..++
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~-~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH-CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 344567899999999999998655432 34566775555 5899999999999999764321 23456677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 027439 196 DLIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 196 ~ll~~~~G~~eeAi~~fekAL~l 218 (223)
.+++. .|++++|..+++++++.
T Consensus 539 ~~~~~-~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 539 EILFA-QGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHH-CCCHHHHHHHHHHHHHH
Confidence 77777 99999999999999875
No 225
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.99 E-value=0.028 Score=53.69 Aligned_cols=93 Identities=15% Similarity=0.086 Sum_probs=69.1
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPR----NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~----n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~ 200 (223)
-|+.+...++.++|++.|++++..... ....+..++.++. .+.+|++|..++.+.++.+.-..-.+..++.+++.
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~-~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM-FQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH-HHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 356666679999999999998853332 2455678885444 58999999999999999876655555555555666
Q ss_pred HcCCH-------HHHHHHHHHHHHh
Q 027439 201 SHKDA-------SRAESYFDQAVKA 218 (223)
Q Consensus 201 ~~G~~-------eeAi~~fekAL~l 218 (223)
..++. ++|..+|.++-.+
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hhccchhhhhhHHHHHHHHHHHHHH
Confidence 58888 8888888887554
No 226
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.98 E-value=0.09 Score=45.23 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=71.3
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 027439 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL-MSPNDGNVLSMYGDLIWQSHKDASRAESYF 212 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~-ldP~d~~~l~~lA~ll~~~~G~~eeAi~~f 212 (223)
|.+.+..-..+.++..|.+.. ...+|..+.+ .|++.+|+.+|++++. +..+|+..+..++...+. .+++..|...+
T Consensus 71 dP~R~~Rea~~~~~~ApTvqn-r~rLa~al~e-lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa-~~~~A~a~~tL 147 (251)
T COG4700 71 DPERHLREATEELAIAPTVQN-RYRLANALAE-LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA-IQEFAAAQQTL 147 (251)
T ss_pred ChhHHHHHHHHHHhhchhHHH-HHHHHHHHHH-hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh-hccHHHHHHHH
Confidence 566666667777777787665 4588877875 8999999999999987 567899999999999999 99999999999
Q ss_pred HHHHHhCCC
Q 027439 213 DQAVKAAPD 221 (223)
Q Consensus 213 ekAL~l~Pd 221 (223)
++..+.+|.
T Consensus 148 e~l~e~~pa 156 (251)
T COG4700 148 EDLMEYNPA 156 (251)
T ss_pred HHHhhcCCc
Confidence 999988775
No 227
>PRK10941 hypothetical protein; Provisional
Probab=95.98 E-value=0.065 Score=47.78 Aligned_cols=66 Identities=11% Similarity=0.027 Sum_probs=58.3
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027439 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGD 196 (223)
Q Consensus 130 ~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ 196 (223)
...++++.|..+.+.++.++|+++.-+..+| .++.+++.+..|..-++..++..|+++.+......
T Consensus 192 ~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRG-ll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 192 MEEKQMELALRASEALLQFDPEDPYEIRDRG-LIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHcCcHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 3458999999999999999999999999999 55557999999999999999999999988765543
No 228
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.92 E-value=0.041 Score=50.31 Aligned_cols=83 Identities=10% Similarity=-0.054 Sum_probs=73.3
Q ss_pred CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 027439 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES 210 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~ 210 (223)
...+|+.|++++.--.+.+|.+-..+..+|.++| +..+|..|..+|++.-.+.|........+|..+|. .+.+..|+.
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY-~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~-A~i~ADALr 99 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYY-RLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK-ACIYADALR 99 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-hcccHHHHH
Confidence 3468999999999999999999999999997777 57999999999999999999999888888888888 899999887
Q ss_pred HHHHH
Q 027439 211 YFDQA 215 (223)
Q Consensus 211 ~fekA 215 (223)
.....
T Consensus 100 V~~~~ 104 (459)
T KOG4340|consen 100 VAFLL 104 (459)
T ss_pred HHHHh
Confidence 66554
No 229
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.91 E-value=0.015 Score=51.14 Aligned_cols=57 Identities=12% Similarity=0.174 Sum_probs=52.4
Q ss_pred CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 027439 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG 188 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~ 188 (223)
..+|.+.|.++|.+++++-|.....|..+| .+.++-++++.|.+.|++.++++|.|.
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g-~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLG-EYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcc-hhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 457899999999999999999999999999 677788999999999999999999875
No 230
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.89 E-value=0.13 Score=44.26 Aligned_cols=85 Identities=19% Similarity=0.230 Sum_probs=62.0
Q ss_pred CCChHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHhCCC------CHHHH
Q 027439 132 NHGNNSTDLYYQKMIQA----DPRN---PLLLSNYARFLKEARGD-------LLKAEEYCARAILMSPN------DGNVL 191 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLel----dP~n---~~~l~nlA~~l~~~~gd-------yeeA~~~~ekAL~ldP~------d~~~l 191 (223)
..++++|++.|.-|+-. ...+ +.++..+| +++..+++ +.+|.+.|++|++.... ...++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlA-WlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLA-WLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 34789999988888742 2222 56677888 55544566 46778888888775432 25778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439 192 SMYGDLIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 192 ~~lA~ll~~~~G~~eeAi~~fekAL~l 218 (223)
+.+|.+.++ .|++++|+.+|.+++..
T Consensus 169 YLigeL~rr-lg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRR-LGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHH-hCCHHHHHHHHHHHHcC
Confidence 889988777 99999999999999865
No 231
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.88 E-value=0.017 Score=31.56 Aligned_cols=33 Identities=21% Similarity=0.423 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 189 NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 189 ~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
.++..+|.+++. .+++++|+..|+++++++|++
T Consensus 2 ~~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLK-LGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHH-HhhHHHHHHHHHHHHccCCCC
Confidence 467788877777 999999999999999998864
No 232
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.86 E-value=0.039 Score=51.46 Aligned_cols=87 Identities=20% Similarity=0.168 Sum_probs=62.4
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCC-HHHHHHHHH-----------HHHHhCCCCHHHHHHHHHHHHHH
Q 027439 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGD-LLKAEEYCA-----------RAILMSPNDGNVLSMYGDLIWQS 201 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gd-yeeA~~~~e-----------kAL~ldP~d~~~l~~lA~ll~~~ 201 (223)
..++|+..|+++++++|+. ..-.|+|..+.. .|. ++...++-+ +-..-.-.+.+.+..++.+...
T Consensus 241 ~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~-~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL- 317 (374)
T PF13281_consen 241 SLDKAIEWYRKGFEIEPDY-YSGINAATLLML-AGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVL- 317 (374)
T ss_pred HHHHHHHHHHHHHcCCccc-cchHHHHHHHHH-cCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH-
Confidence 4899999999999999654 445688855553 453 332222111 1122234567777888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCC
Q 027439 202 HKDASRAESYFDQAVKAAPDDW 223 (223)
Q Consensus 202 ~G~~eeAi~~fekAL~l~Pdn~ 223 (223)
.+++++|++++++++++.|..|
T Consensus 318 ~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 318 AGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cCCHHHHHHHHHHHhhcCCcch
Confidence 9999999999999999999988
No 233
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.70 E-value=0.027 Score=32.73 Aligned_cols=32 Identities=34% Similarity=0.350 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 027439 155 LLSNYARFLKEARGDLLKAEEYCARAILMSPND 187 (223)
Q Consensus 155 ~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d 187 (223)
++.++|.++. ..+++++|+..|++++...|+.
T Consensus 2 a~~~~a~~~~-~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYY-KLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHH-HHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHH-HccCHHHHHHHHHHHHHHCcCC
Confidence 5678996666 5899999999999999999974
No 234
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.68 E-value=0.023 Score=34.75 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439 190 VLSMYGDLIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 190 ~l~~lA~ll~~~~G~~eeAi~~fekAL~l 218 (223)
++..+|.++.. .|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~-~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQ-QGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 46788988777 99999999999996644
No 235
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.67 E-value=0.014 Score=53.46 Aligned_cols=81 Identities=9% Similarity=0.094 Sum_probs=52.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 027439 141 YYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAP 220 (223)
Q Consensus 141 ~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~P 220 (223)
.|.++-..-|+++.+|..++.+.. +.+.|.+--..|-+++...|.|.++|..-+..-+...++++.|+..|++++..+|
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~-k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~ 173 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVI-KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS 173 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence 344555556777777777774333 4567777777777777777777777765444433336777777777777777766
Q ss_pred CC
Q 027439 221 DD 222 (223)
Q Consensus 221 dn 222 (223)
++
T Consensus 174 ~~ 175 (435)
T COG5191 174 RS 175 (435)
T ss_pred CC
Confidence 53
No 236
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.60 E-value=0.034 Score=43.75 Aligned_cols=52 Identities=17% Similarity=0.078 Sum_probs=43.3
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027439 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL 182 (223)
Q Consensus 130 ~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ 182 (223)
...+++++|+..+++++..+|.+-.++..+-.++. ..|++.+|++.|++...
T Consensus 73 ~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~-~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 73 LEAGDYEEALRLLQRALALDPYDEEAYRLLMRALA-AQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 34689999999999999999999999999987777 58999999999988754
No 237
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.57 E-value=0.017 Score=50.90 Aligned_cols=56 Identities=18% Similarity=0.278 Sum_probs=51.4
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 166 ~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
..+|.+.|.+.|.+|+++-|.....|+.++...-+ .|+++.|.+.|++.++++|+|
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ek-ag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEK-AGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhh-cccHHHHHHHHHHHHcCCccc
Confidence 36899999999999999999999999999965555 999999999999999999986
No 238
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.53 E-value=0.07 Score=53.76 Aligned_cols=88 Identities=17% Similarity=0.143 Sum_probs=59.8
Q ss_pred ccCCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--------CHHHHHHH
Q 027439 129 DPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN--------DGNVLSMY 194 (223)
Q Consensus 129 Y~~~gd~~eA~~~y~~aLeldP~n------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~--------d~~~l~~l 194 (223)
+...|++++|..+++++++..... ..++.++|..++ ..|++++|..++++++.+-.. ...++..+
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF-AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 445678888888888888653321 234566775555 478888888888888775211 12334456
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 027439 195 GDLIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 195 A~ll~~~~G~~eeAi~~fekAL~l 218 (223)
+.+++. .|++++|...+++++..
T Consensus 580 a~~~~~-~G~~~~A~~~~~~al~~ 602 (903)
T PRK04841 580 AQLLWE-WARLDEAEQCARKGLEV 602 (903)
T ss_pred HHHHHH-hcCHHHHHHHHHHhHHh
Confidence 766777 78888888888888765
No 239
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.52 E-value=0.15 Score=49.18 Aligned_cols=90 Identities=14% Similarity=0.080 Sum_probs=67.9
Q ss_pred CCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCC---
Q 027439 131 NNHGNNSTDLYYQKMIQADPR--NPLLLSNYARFLKEARGDLLKAEEYCARAILM-SPNDGNVLSMYGDLIWQSHKD--- 204 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLeldP~--n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l-dP~d~~~l~~lA~ll~~~~G~--- 204 (223)
+.|+.++|++.|+.+++.+|. +..++.++..++.+ .++|.++...+.|--.+ -|+.+.+.++-|-+.++..++
T Consensus 271 klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe-lq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs 349 (539)
T PF04184_consen 271 KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE-LQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFS 349 (539)
T ss_pred HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh-cCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccC
Confidence 458999999999999998875 56789999988886 79999999998885433 256666666666443332332
Q ss_pred ------------HHHHHHHHHHHHHhCCC
Q 027439 205 ------------ASRAESYFDQAVKAAPD 221 (223)
Q Consensus 205 ------------~eeAi~~fekAL~l~Pd 221 (223)
...|++++.||++.||.
T Consensus 350 ~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 350 PEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred chhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 13578999999999984
No 240
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.51 E-value=0.12 Score=49.85 Aligned_cols=67 Identities=16% Similarity=0.221 Sum_probs=59.3
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIW 199 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~ 199 (223)
+.+.+--..|.+++..+|+++.+|..-|.+.++.+-+.+.|..++.+++..+|+.+.+|.-|-.+..
T Consensus 119 ~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL 185 (568)
T KOG2396|consen 119 KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMEL 185 (568)
T ss_pred cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Confidence 4578888999999999999999999999999987667999999999999999999999877766533
No 241
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.48 E-value=0.1 Score=51.03 Aligned_cols=84 Identities=12% Similarity=0.029 Sum_probs=64.9
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------------------------
Q 027439 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS------------------------- 184 (223)
Q Consensus 130 ~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld------------------------- 184 (223)
.+.+..++|+.+++ -.++.+..+..-.|.++| ++++|++|...|+..++.+
T Consensus 90 Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlY-rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q 165 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK---GLDRLDDKLLELRAQVLY-RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQ 165 (652)
T ss_pred HHcccHHHHHHHHh---cccccchHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHH
Confidence 45677888998888 566777777788898888 6999999999999775432
Q ss_pred -----CC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439 185 -----PN-DGNVLSMYGDLIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 185 -----P~-d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l 218 (223)
|. ..+.+++.|-++.. .|+|.+|++.+++|+.+
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~-~gky~qA~elL~kA~~~ 204 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIE-NGKYNQAIELLEKALRI 204 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHh-cccHHHHHHHHHHHHHH
Confidence 22 44567777755666 99999999999999543
No 242
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.43 E-value=0.041 Score=37.22 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 190 VLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 190 ~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
.++.+|..+++ .|+|++|+.+.+++|+++|+|
T Consensus 3 ~lY~lAig~yk-l~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 3 CLYYLAIGHYK-LGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHHTTS-
T ss_pred hHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCc
Confidence 45677877888 999999999999999999987
No 243
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.43 E-value=0.035 Score=51.80 Aligned_cols=94 Identities=14% Similarity=0.002 Sum_probs=71.4
Q ss_pred CCccccccCCCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC----C-----
Q 027439 123 GRWGSWDPNNHGNNSTDLYYQKMIQADPRNP------LLLSNYARFLKEARGDLLKAEEYCARAILMSPN----D----- 187 (223)
Q Consensus 123 ~~gg~~Y~~~gd~~eA~~~y~~aLeldP~n~------~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~----d----- 187 (223)
+-.++.+...+.|+++++.|+.|++...++. .++..++. +|-+.+|+++|..+..+|.++-.. |
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgs-lf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGS-LFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHH-HHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 3355556667889999999999998755443 46778884 555689999999999999887432 2
Q ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439 188 -GNVLSMYGDLIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 188 -~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l 218 (223)
..+++.++..+.+ +|+.-.|.++.+.|.++
T Consensus 205 r~~~lyhmaValR~-~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 205 RAMSLYHMAVALRL-LGRLGDAMECCEEAMKL 235 (518)
T ss_pred HHHHHHHHHHHHHH-hcccccHHHHHHHHHHH
Confidence 2456777855555 99999999999998765
No 244
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.42 E-value=0.057 Score=53.45 Aligned_cols=90 Identities=24% Similarity=0.336 Sum_probs=72.7
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHc--CCH
Q 027439 130 PNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNVLSMYGDLIWQSH--KDA 205 (223)
Q Consensus 130 ~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld--P~d~~~l~~lA~ll~~~~--G~~ 205 (223)
+..|-++...+.|++++++-=..+.+..|||.+|-. ..-|++|.+.|+|.|.+. |+-.++|..|-..+..+. ...
T Consensus 488 Es~gtfestk~vYdriidLriaTPqii~NyAmfLEe-h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~kl 566 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEE-HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKL 566 (835)
T ss_pred HHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCH
Confidence 344788889999999999999999999999966664 677899999999999987 556677776665544433 378
Q ss_pred HHHHHHHHHHHHhCC
Q 027439 206 SRAESYFDQAVKAAP 220 (223)
Q Consensus 206 eeAi~~fekAL~l~P 220 (223)
++|..+|+|||+.-|
T Consensus 567 EraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 567 ERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999998655
No 245
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.35 E-value=0.086 Score=46.60 Aligned_cols=93 Identities=12% Similarity=0.021 Sum_probs=57.0
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH-H-----HH
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLL------LSNYARFLKEARGDLLKAEEYCARAILMSPNDGN-V-----LS 192 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~------l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~-~-----l~ 192 (223)
.+.+|.+. +..+|+.++++++++..+-..+ +..+|.++-..+.++++|+.+|++|-+....+-. . +.
T Consensus 80 A~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~l 158 (288)
T KOG1586|consen 80 AANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLL 158 (288)
T ss_pred HHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHH
Confidence 34444443 7788888888888876554433 3356644433346888899999888776543321 1 22
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 027439 193 MYGDLIWQSHKDASRAESYFDQAVKAA 219 (223)
Q Consensus 193 ~lA~ll~~~~G~~eeAi~~fekAL~l~ 219 (223)
..|. +-...++|.+|+..|+++....
T Consensus 159 KvA~-yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 159 KVAQ-YAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 2222 2223778888998888876553
No 246
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.15 Score=45.78 Aligned_cols=90 Identities=18% Similarity=0.153 Sum_probs=73.3
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH-HHHH
Q 027439 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS-RAES 210 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e-eAi~ 210 (223)
++.-..|.++-+.+|.++|.|-.+|..+=.++.....+..+-++++.+.++-+|.|..+|...-.+.-. .|++. +-++
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~-l~d~s~rELe 134 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVEL-LGDPSFRELE 134 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHH-hcCcccchHH
Confidence 445678888899999999999999877776777666788888999999999999999999887755544 88888 8888
Q ss_pred HHHHHHHhCCCC
Q 027439 211 YFDQAVKAAPDD 222 (223)
Q Consensus 211 ~fekAL~l~Pdn 222 (223)
..++++..+..|
T Consensus 135 f~~~~l~~DaKN 146 (318)
T KOG0530|consen 135 FTKLMLDDDAKN 146 (318)
T ss_pred HHHHHHhccccc
Confidence 888888766554
No 247
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.24 E-value=0.083 Score=50.18 Aligned_cols=92 Identities=10% Similarity=0.033 Sum_probs=71.0
Q ss_pred ccccccCCCChHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------CCCHHHHH
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQA----DPR--NPLLLSNYARFLKEARGDLLKAEEYCARAILMS------PNDGNVLS 192 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLel----dP~--n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld------P~d~~~l~ 192 (223)
-|.+|.-.++|+.|+++|++++.+ ... .+...+.+|+.|+. ..+|++|+.|.++-+.+- -....+.+
T Consensus 241 lgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl-l~e~~kAI~Yh~rHLaIAqeL~DriGe~Racw 319 (639)
T KOG1130|consen 241 LGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL-LKEVQKAITYHQRHLAIAQELEDRIGELRACW 319 (639)
T ss_pred cchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 556777789999999999998754 222 24556788887885 789999999998866542 23456777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439 193 MYGDLIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 193 ~lA~ll~~~~G~~eeAi~~fekAL~l 218 (223)
.+|..+.. .|.+++|+.+.++.+++
T Consensus 320 SLgna~~a-lg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 320 SLGNAFNA-LGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHh-hhhHHHHHHHHHHHHHH
Confidence 88877766 99999999999998876
No 248
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.11 E-value=0.11 Score=55.33 Aligned_cols=91 Identities=13% Similarity=0.260 Sum_probs=80.3
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPR--NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~--n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~ 204 (223)
.....+.+-++|...+++|++.-|. +..+....|..-| +.||.+.+..+|+-.+..+|.-.++|..|.+.-.+ +++
T Consensus 1572 ~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF-k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik-~~~ 1649 (1710)
T KOG1070|consen 1572 DFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF-KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIK-HGD 1649 (1710)
T ss_pred HHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh-hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHc-cCC
Confidence 3444556678899999999999998 8899989996556 68999999999999999999999999999998888 999
Q ss_pred HHHHHHHHHHHHHhC
Q 027439 205 ASRAESYFDQAVKAA 219 (223)
Q Consensus 205 ~eeAi~~fekAL~l~ 219 (223)
.+-++..|+|++.+.
T Consensus 1650 ~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1650 IKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999764
No 249
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.19 Score=49.23 Aligned_cols=90 Identities=19% Similarity=0.174 Sum_probs=74.5
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH------HHHHHHHcCCH
Q 027439 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMY------GDLIWQSHKDA 205 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~l------A~ll~~~~G~~ 205 (223)
.++...+......++..||.+..++.+++..+-.....+.-++..++.+....|++..++... +...-. .++.
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~ 158 (620)
T COG3914 80 LADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKL-LGRT 158 (620)
T ss_pred cccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHH-hccH
Confidence 456678888899999999999999999997776544566777778888999999999888777 654444 8899
Q ss_pred HHHHHHHHHHHHhCCCC
Q 027439 206 SRAESYFDQAVKAAPDD 222 (223)
Q Consensus 206 eeAi~~fekAL~l~Pdn 222 (223)
.++..++++++...|.+
T Consensus 159 ~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 159 AEAELALERAVDLLPKY 175 (620)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 99999999999988764
No 250
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=0.14 Score=45.95 Aligned_cols=88 Identities=18% Similarity=0.086 Sum_probs=68.8
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-H--HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLK-E--ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~-~--~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA 208 (223)
...++-|++..+++.+++.+.. +.+||..+- . -...+.+|..+|+..-+..|..+..+...|.++.. ++++++|
T Consensus 150 ~~r~d~A~~~lk~mq~ided~t--LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~-~~~~eeA 226 (299)
T KOG3081|consen 150 MHRFDLAEKELKKMQQIDEDAT--LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ-LGRYEEA 226 (299)
T ss_pred HHHHHHHHHHHHHHHccchHHH--HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHH-hcCHHHH
Confidence 4677888888888888876643 334443332 1 12468999999999999778899999999977777 9999999
Q ss_pred HHHHHHHHHhCCCC
Q 027439 209 ESYFDQAVKAAPDD 222 (223)
Q Consensus 209 i~~fekAL~l~Pdn 222 (223)
...++.||..++++
T Consensus 227 e~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 227 ESLLEEALDKDAKD 240 (299)
T ss_pred HHHHHHHHhccCCC
Confidence 99999999988764
No 251
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.025 Score=49.97 Aligned_cols=59 Identities=15% Similarity=0.062 Sum_probs=52.3
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439 161 RFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD 221 (223)
Q Consensus 161 ~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd 221 (223)
+.|+ ...+|..|+.+|.+||.++|..+..+.+-|..+++ ..+++.+..-..+|++++||
T Consensus 18 nk~f-~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N 76 (284)
T KOG4642|consen 18 NKCF-IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPN 76 (284)
T ss_pred cccc-chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChH
Confidence 3455 36789999999999999999999999999976666 99999999999999999986
No 252
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.87 E-value=0.12 Score=44.59 Aligned_cols=62 Identities=24% Similarity=0.251 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027439 138 TDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200 (223)
Q Consensus 138 A~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~ 200 (223)
|+.+|++|+.+.|.+...++++| .+....++.-.|+.+|-|++...-..+.+..++..++-+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLA-vl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLA-VLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHH-HHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchh-hhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78999999999999999999999 555568999999999999998776678888888855443
No 253
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.87 E-value=0.13 Score=40.01 Aligned_cols=90 Identities=14% Similarity=0.084 Sum_probs=66.1
Q ss_pred cccCCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH---HhCC-------HHHHHHHHHHHHHhCCCCHHHHHHH
Q 027439 128 WDPNNHGNNSTDLYYQKMIQADPRNP---LLLSNYARFLKE---ARGD-------LLKAEEYCARAILMSPNDGNVLSMY 194 (223)
Q Consensus 128 ~Y~~~gd~~eA~~~y~~aLeldP~n~---~~l~nlA~~l~~---~~gd-------yeeA~~~~ekAL~ldP~d~~~l~~l 194 (223)
-+..+||+-+|+++.+.++...+++. .++..-|.+++. +..+ .--++++|.++..+.|+.+..++.+
T Consensus 5 ~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~l 84 (111)
T PF04781_consen 5 DYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFEL 84 (111)
T ss_pred HHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHH
Confidence 35567899999999999999988776 334344433322 1111 2568999999999999998888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 027439 195 GDLIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 195 A~ll~~~~G~~eeAi~~fekAL~l 218 (223)
|.-+-- ...|++++...+++|..
T Consensus 85 a~~l~s-~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 85 ASQLGS-VKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHhhh-HHHHHHHHHHHHHHhcc
Confidence 865444 55688888888888865
No 254
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.56 E-value=0.27 Score=44.35 Aligned_cols=93 Identities=19% Similarity=0.210 Sum_probs=66.9
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH---H---HHHHHHHHHH
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN---V---LSMYGDLIWQ 200 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~---~---l~~lA~ll~~ 200 (223)
-+|.-.++|..|...|.+.++.||.++.+.++-|.++. ..++..+|++..+.++++.|.... + +..+..++|.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll-Ylg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL~Ys 338 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL-YLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYELEYS 338 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHH-HHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHHhh
Confidence 34455679999999999999999999999999996666 489999999999999999997542 2 3344444554
Q ss_pred HcCCHHHHHHHHHHHH-HhCCCCC
Q 027439 201 SHKDASRAESYFDQAV-KAAPDDW 223 (223)
Q Consensus 201 ~~G~~eeAi~~fekAL-~l~Pdn~ 223 (223)
..-+.+.++ ..++ ...|++|
T Consensus 339 ~~~~~k~~l---~~~ia~~~~d~f 359 (366)
T KOG2796|consen 339 RSMQKKQAL---LEAVAGKEGDSF 359 (366)
T ss_pred hhhhHHHHH---HHHHhccCCCcc
Confidence 333333333 3333 3366665
No 255
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.52 E-value=0.27 Score=39.97 Aligned_cols=70 Identities=16% Similarity=0.155 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHH-hCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 152 NPLLLSNYARFLKE--ARGDLLKAEEYCARAIL-MSPNDG-NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 152 n~~~l~nlA~~l~~--~~gdyeeA~~~~ekAL~-ldP~d~-~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
.....++||+++-. ...+..+.+.+++..++ ..|..- +-++.+|.-+++ .++|++|+.|.+..++.+|+|
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR-lkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR-LKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH-HhhHHHHHHHHHHHHhhCCCc
Confidence 35667788866642 12466888889999986 555433 456667766787 999999999999999999886
No 256
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.48 E-value=0.49 Score=39.17 Aligned_cols=72 Identities=15% Similarity=0.092 Sum_probs=61.6
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e 206 (223)
++.++++..+..+--+.|..+.+-..-| .++.+.+++.+|+.+++.+.+..|..+.+--.++.+++. .++.+
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~-~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~-~~D~~ 95 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDG-WLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA-LGDPS 95 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHH-HHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH-cCChH
Confidence 4789999999999999999999988888 555578999999999999999999999888888866665 77654
No 257
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.46 E-value=0.3 Score=43.56 Aligned_cols=92 Identities=12% Similarity=0.057 Sum_probs=63.9
Q ss_pred CccccccCCCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCH-HHH
Q 027439 124 RWGSWDPNNHGNNSTDLYYQKMIQADPRNP------LLLSNYARFLKEARGDLLKAEEYCARAILMS-----PNDG-NVL 191 (223)
Q Consensus 124 ~gg~~Y~~~gd~~eA~~~y~~aLeldP~n~------~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld-----P~d~-~~l 191 (223)
..+..|..-++|++|..++.++++-..+|. ..+-..+ .+......+.+++.+|++|..+. |+-. .++
T Consensus 36 kAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaa-mLake~~klsEvvdl~eKAs~lY~E~GspdtAAmal 114 (308)
T KOG1585|consen 36 KAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAA-MLAKELSKLSEVVDLYEKASELYVECGSPDTAAMAL 114 (308)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHH
Confidence 345556667899999999999996555443 3344444 33334678999999999998875 4333 233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439 192 SMYGDLIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 192 ~~lA~ll~~~~G~~eeAi~~fekAL~l 218 (223)
-.-| -+.+ +-+.++|+.+|++++.+
T Consensus 115 eKAa-k~le-nv~Pd~AlqlYqralav 139 (308)
T KOG1585|consen 115 EKAA-KALE-NVKPDDALQLYQRALAV 139 (308)
T ss_pred HHHH-HHhh-cCCHHHHHHHHHHHHHH
Confidence 3333 3556 78999999999999876
No 258
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.42 E-value=0.82 Score=41.40 Aligned_cols=84 Identities=13% Similarity=0.142 Sum_probs=68.2
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cCCHHHHHHH
Q 027439 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS--HKDASRAESY 211 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~--~G~~eeAi~~ 211 (223)
-.+..+.+|++|++.+|++..++..|-.... +.-+-++..+-+++++..+|+++.+|..|-+..... .-.+.+.+..
T Consensus 46 ~~E~klsilerAL~~np~~~~L~l~~l~~~~-~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 46 LAERKLSILERALKHNPDSERLLLGYLEEGE-KVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 3467889999999999999999888876555 456888889999999999999999998888664442 2357788888
Q ss_pred HHHHHHh
Q 027439 212 FDQAVKA 218 (223)
Q Consensus 212 fekAL~l 218 (223)
|.+++..
T Consensus 125 y~~~l~~ 131 (321)
T PF08424_consen 125 YEKCLRA 131 (321)
T ss_pred HHHHHHH
Confidence 8888764
No 259
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.40 E-value=0.11 Score=31.50 Aligned_cols=29 Identities=28% Similarity=0.279 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 027439 154 LLLSNYARFLKEARGDLLKAEEYCARAILM 183 (223)
Q Consensus 154 ~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l 183 (223)
.++.++|.++. .++++++|+.++++++++
T Consensus 3 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYR-AQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHH-HCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hhhhcchhhHHHHHHHHH
Confidence 45677775555 467888888877777765
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.19 E-value=0.25 Score=45.88 Aligned_cols=88 Identities=15% Similarity=0.102 Sum_probs=74.2
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHcCCHHHH
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM-SPND---GNVLSMYGDLIWQSHKDASRA 208 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l-dP~d---~~~l~~lA~ll~~~~G~~eeA 208 (223)
|++.+|....++.++-.|.+..++..--.+++ .+|+.+.-...++|.+.. +|+. ..++..|+.-+.. .|-|++|
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~f-y~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-~g~y~dA 194 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHF-YNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-CGIYDDA 194 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHH-hccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH-hccchhH
Confidence 57788889999999999999988876665566 479999999999999988 7777 5666777755666 9999999
Q ss_pred HHHHHHHHHhCCCC
Q 027439 209 ESYFDQAVKAAPDD 222 (223)
Q Consensus 209 i~~fekAL~l~Pdn 222 (223)
.+.-++++++||.|
T Consensus 195 Ek~A~ralqiN~~D 208 (491)
T KOG2610|consen 195 EKQADRALQINRFD 208 (491)
T ss_pred HHHHHhhccCCCcc
Confidence 99999999999875
No 261
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.17 E-value=0.46 Score=42.10 Aligned_cols=67 Identities=15% Similarity=0.097 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG---NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 154 ~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~---~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
..|.+-|.... ..|++++|+..|+++....|..+ .+...++-++++ .+++++|+.++++-+.+.|.+
T Consensus 35 ~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~ 104 (254)
T COG4105 35 SELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTH 104 (254)
T ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCC
Confidence 33444443333 47999999999999999988765 667778877888 999999999999999999875
No 262
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.96 E-value=0.17 Score=30.62 Aligned_cols=29 Identities=10% Similarity=0.137 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439 189 NVLSMYGDLIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 189 ~~l~~lA~ll~~~~G~~eeAi~~fekAL~l 218 (223)
.++..+|.++.. .|++++|+.++++++++
T Consensus 3 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRA-QGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-hhhcchhhHHHHHHHHH
Confidence 467889988777 99999999999999876
No 263
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.89 E-value=0.1 Score=48.80 Aligned_cols=91 Identities=21% Similarity=0.236 Sum_probs=68.7
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCC----C------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------CCCHH
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPR----N------PLLLSNYARFLKEARGDLLKAEEYCARAILMS------PNDGN 189 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~----n------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld------P~d~~ 189 (223)
|.+|...+|+++|.-+..+|+++-.. + ..+++.++-.+. ++|+...|.++|++|.++. +-...
T Consensus 169 gslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR-~~G~LgdA~e~C~Ea~klal~~Gdra~~ar 247 (518)
T KOG1941|consen 169 GSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALR-LLGRLGDAMECCEEAMKLALQHGDRALQAR 247 (518)
T ss_pred HHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHhCChHHHHH
Confidence 44555678999999999999986432 1 245566774455 5899999999999997763 33445
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439 190 VLSMYGDLIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 190 ~l~~lA~ll~~~~G~~eeAi~~fekAL~l 218 (223)
-+..+|+++.. .|+.++|...|++|...
T Consensus 248 c~~~~aDIyR~-~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 248 CLLCFADIYRS-RGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHh-cccHhHHHHHHHHHHHH
Confidence 56778888777 99999999999998754
No 264
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=93.85 E-value=0.078 Score=50.62 Aligned_cols=69 Identities=16% Similarity=0.048 Sum_probs=61.3
Q ss_pred cccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027439 128 WDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL 197 (223)
Q Consensus 128 ~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l 197 (223)
.|.+.++|..|+.-+.+|++.+|....+|...|.++. ..+++.+|...|++...+.|+++.+...+..+
T Consensus 47 a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m-~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 47 AHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM-ALGEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred hheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH-hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 3455678999999999999999999999999986666 58999999999999999999999998887766
No 265
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.53 E-value=0.21 Score=45.78 Aligned_cols=66 Identities=11% Similarity=-0.003 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439 151 RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 151 ~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l 218 (223)
+++.+.++.|..+| +.++|+.|++-|+.|++...-++-+-+++|-++|. .++++.|+++....++.
T Consensus 142 n~Ad~~in~gClly-kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~-~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 142 NEADGQINLGCLLY-KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS-SRQYASALKHISEIIER 207 (459)
T ss_pred Cccchhccchheee-ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh-hhhHHHHHHHHHHHHHh
Confidence 56677788884445 57888888888888888888788787888877777 88888888877776654
No 266
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.21 E-value=0.61 Score=43.99 Aligned_cols=89 Identities=9% Similarity=0.137 Sum_probs=70.4
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC---HHHH
Q 027439 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARG--DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD---ASRA 208 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~g--dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~---~eeA 208 (223)
-.++-+.+...+++.+|+.-.+|+.+..++. ++. ++..=+++|++++++||.|...|...=.++-..... ..+-
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~-~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~E 168 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQ-KNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEE 168 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhH
Confidence 5677888999999999999999999996666 344 478889999999999999887766554443332333 6677
Q ss_pred HHHHHHHHHhCCCCC
Q 027439 209 ESYFDQAVKAAPDDW 223 (223)
Q Consensus 209 i~~fekAL~l~Pdn~ 223 (223)
+++.++++..++.||
T Consensus 169 l~ftt~~I~~nfSNY 183 (421)
T KOG0529|consen 169 LEFTTKLINDNFSNY 183 (421)
T ss_pred HHHHHHHHhccchhh
Confidence 889999998888775
No 267
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=93.04 E-value=0.28 Score=27.86 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=15.9
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027439 134 GNNSTDLYYQKMIQADPRNPLLLSNYA 160 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP~n~~~l~nlA 160 (223)
+++.|...|++++...|.++.+|..++
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445556666666666666666665555
No 268
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=92.88 E-value=0.7 Score=47.25 Aligned_cols=74 Identities=14% Similarity=0.022 Sum_probs=57.3
Q ss_pred CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 027439 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee 207 (223)
+.|..++|..+++......+++...+..+- ++|..++++++|+.+|++++..+|+ -..+..+-.++.+ .+.|.+
T Consensus 55 r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~-~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR-~~~yk~ 128 (932)
T KOG2053|consen 55 RLGKGDEALKLLEALYGLKGTDDLTLQFLQ-NVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVR-EKSYKK 128 (932)
T ss_pred HhcCchhHHHHHhhhccCCCCchHHHHHHH-HHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHH-HHHHHH
Confidence 457789999999888888888888887777 5555689999999999999999998 6666556555444 555543
No 269
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.54 E-value=1.3 Score=32.64 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439 191 LSMYGDLIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 191 l~~lA~ll~~~~G~~eeAi~~fekAL~l 218 (223)
+..+|.+... .|++++|+..++.|+++
T Consensus 44 ll~lA~~~~~-~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 44 LLNLAELHRR-FGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHH-hCCHHHHHHHHHHHHHH
Confidence 3334433333 45555555555555443
No 270
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.47 E-value=0.45 Score=42.19 Aligned_cols=53 Identities=17% Similarity=0.154 Sum_probs=41.3
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHH------HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439 166 ARGDLLKAEEYCARAILMSPNDGNVLS------MYGDLIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 166 ~~gdyeeA~~~~ekAL~ldP~d~~~l~------~lA~ll~~~~G~~eeAi~~fekAL~l 218 (223)
+..+.++|+.++++||++.-+-+.... .+|.++-....++++|+.+|++|-+-
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~ 143 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY 143 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 357999999999999999876554433 67766555457999999999998653
No 271
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=92.34 E-value=0.4 Score=27.20 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027439 168 GDLLKAEEYCARAILMSPNDGNVLSMYGDL 197 (223)
Q Consensus 168 gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l 197 (223)
+++++|...|++++...|.++.+|..++..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467899999999999999999999888854
No 272
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.07 E-value=0.16 Score=46.75 Aligned_cols=65 Identities=9% Similarity=0.074 Sum_probs=55.8
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL 197 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l 197 (223)
+-|.+--..|.+++..+|.|++.|..-+.+-+...++++.+..++.+++.++|++|.+|..+-.+
T Consensus 121 k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~ 185 (435)
T COG5191 121 KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM 185 (435)
T ss_pred HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence 56677778889999999999999987666666678999999999999999999999998776654
No 273
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=92.07 E-value=0.92 Score=44.40 Aligned_cols=72 Identities=17% Similarity=0.190 Sum_probs=53.7
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027439 143 QKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVK 217 (223)
Q Consensus 143 ~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~ 217 (223)
++-++.+|.|..+|..+-..+- .+.++++.+.|++.+...|..+.+|..+....+. .++|+.-...|.+.|.
T Consensus 10 ~~rie~nP~di~sw~~lire~q--t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~-skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQ--TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELA-SKDFESVEKLFSRCLV 81 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHc--cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Confidence 6677788888888877764333 3478888888888888888888888887777676 7778877777777664
No 274
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=92.05 E-value=1.7 Score=40.25 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=53.9
Q ss_pred HHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------------C------------CCC---HHHHHHHHH
Q 027439 146 IQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM--------------S------------PND---GNVLSMYGD 196 (223)
Q Consensus 146 LeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l--------------d------------P~d---~~~l~~lA~ 196 (223)
++.+|.+..++.+++.++. ++|+++.|.++++||+-. + +.| ..+++.+..
T Consensus 33 l~~~PyHidtLlqls~v~~-~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYR-QQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 3468899999999997666 589999988888888542 1 112 223344443
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439 197 LIWQSHKDASRAESYFDQAVKAAPD 221 (223)
Q Consensus 197 ll~~~~G~~eeAi~~fekAL~l~Pd 221 (223)
.+.+ .|-+..|.++.+-.+.++|+
T Consensus 112 ~L~~-RG~~rTAlE~~KlLlsLdp~ 135 (360)
T PF04910_consen 112 SLGR-RGCWRTALEWCKLLLSLDPD 135 (360)
T ss_pred HHHh-cCcHHHHHHHHHHHHhcCCC
Confidence 4455 89999999999999999987
No 275
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.98 E-value=3.1 Score=33.36 Aligned_cols=84 Identities=11% Similarity=0.048 Sum_probs=55.2
Q ss_pred CChHHHHHHHHHHHHhCC------------CCHHHHHHHHHHHHHHhCCHHHHH-------HHHHHHHHhCCCCHHHHH-
Q 027439 133 HGNNSTDLYYQKMIQADP------------RNPLLLSNYARFLKEARGDLLKAE-------EYCARAILMSPNDGNVLS- 192 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP------------~n~~~l~nlA~~l~~~~gdyeeA~-------~~~ekAL~ldP~d~~~l~- 192 (223)
+-|++|.+-|++++++.- .++..+..|+.++. .+++|++++ .||.+-=+++.+....|.
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~-~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa 101 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALA-GLGRYDECLQSADRALRYFNRRGELHQDEGKLWIA 101 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence 578999999999998632 13556777776666 589997655 455555567777665553
Q ss_pred ---HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439 193 ---MYGDLIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 193 ---~lA~ll~~~~G~~eeAi~~fekAL~l 218 (223)
..|..+-. .|+.++|+..|+++-++
T Consensus 102 aVfsra~Al~~-~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 102 AVFSRAVALEG-LGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cCChHHHHHHHHHHHHH
Confidence 33433444 99999999999998764
No 276
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.78 E-value=0.41 Score=44.27 Aligned_cols=68 Identities=10% Similarity=-0.049 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN----VLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 153 ~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~----~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
+.-+-.=|+.++ +.++|..|+..|.+.|+..-.|++ .+.+.|.+.+. .|+|..|+.-+.+|++++|.+
T Consensus 81 Aen~KeeGN~~f-K~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-l~NyRs~l~Dcs~al~~~P~h 152 (390)
T KOG0551|consen 81 AENYKEEGNEYF-KEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-LGNYRSALNDCSAALKLKPTH 152 (390)
T ss_pred HHHHHHHhHHHH-HhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhcCcch
Confidence 344556677777 478999999999999998766553 46667756565 899999999999999999975
No 277
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.64 E-value=0.72 Score=28.60 Aligned_cols=30 Identities=13% Similarity=0.038 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCC
Q 027439 191 LSMYGDLIWQSHKDASRAESYFD--QAVKAAPD 221 (223)
Q Consensus 191 l~~lA~ll~~~~G~~eeAi~~fe--kAL~l~Pd 221 (223)
+..+|..++. .|++++|+.+|+ -+..+++.
T Consensus 4 ~y~~a~~~y~-~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQ-KGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHH-HhhHHHHHHHHHHHHHHHhccc
Confidence 3444544444 555555555522 44444444
No 278
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.59 E-value=0.034 Score=51.27 Aligned_cols=55 Identities=22% Similarity=0.249 Sum_probs=52.0
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 167 ~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
.|.+++|++.|.+||+++|....++...+.++++ +++...|+..|..|+.++|+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk-l~kp~~airD~d~A~ein~Ds 181 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLK-LKKPNAAIRDCDFAIEINPDS 181 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeee-ccCCchhhhhhhhhhccCccc
Confidence 5899999999999999999999999999998888 999999999999999999873
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.51 E-value=0.92 Score=37.73 Aligned_cols=91 Identities=15% Similarity=0.057 Sum_probs=60.2
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHHH---HHHHHH
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMS--PNDGNVL---SMYGDL 197 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld--P~d~~~l---~~lA~l 197 (223)
|..|.+.||.++|+++|.++.+..... ...+.++-++... .+++..+..+..+|-.+- +.|.... ..+..+
T Consensus 43 ~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL 121 (177)
T PF10602_consen 43 ADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-FGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGL 121 (177)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 456777889999999999988765443 2344455544453 689999999988886653 2333322 223334
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 027439 198 IWQSHKDASRAESYFDQAVK 217 (223)
Q Consensus 198 l~~~~G~~eeAi~~fekAL~ 217 (223)
+....++|.+|-..|-.++.
T Consensus 122 ~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 122 ANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHhchHHHHHHHHHccCc
Confidence 45558899999888877653
No 280
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=91.51 E-value=2 Score=40.86 Aligned_cols=83 Identities=17% Similarity=0.122 Sum_probs=63.4
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 027439 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARF-LKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAES 210 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~-l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~ 210 (223)
.|+++.|.+.|+.++. +|..-.. .-.|.+ -.+++|+++.|..|-++|-+.-|.-+++....-..... .|+.+.|++
T Consensus 133 eG~~~~Ar~kfeAMl~-dPEtRll-GLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~-~gdWd~Alk 209 (531)
T COG3898 133 EGDYEDARKKFEAMLD-DPETRLL-GLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCA-AGDWDGALK 209 (531)
T ss_pred cCchHHHHHHHHHHhc-ChHHHHH-hHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHh-cCChHHHHH
Confidence 4899999999988764 4553332 233312 23467999999999999999999999887766666677 999999999
Q ss_pred HHHHHHH
Q 027439 211 YFDQAVK 217 (223)
Q Consensus 211 ~fekAL~ 217 (223)
+.++..+
T Consensus 210 Lvd~~~~ 216 (531)
T COG3898 210 LVDAQRA 216 (531)
T ss_pred HHHHHHH
Confidence 9987654
No 281
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.42 E-value=0.52 Score=42.16 Aligned_cols=65 Identities=9% Similarity=-0.003 Sum_probs=55.5
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVL 191 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l 191 (223)
..++...++|-++++.....+..+|.|..+++..|.+... -=+.++|.+-+.++++++|.-..+-
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa-~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAA-VWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-hcCHHHHHHHHHHHHhcChhhHHHH
Confidence 4455666899999999999999999999999999987764 4688999999999999999765543
No 282
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.93 E-value=1.9 Score=37.10 Aligned_cols=71 Identities=14% Similarity=0.090 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHHH
Q 027439 136 NSTDLYYQKMIQA-DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN----DGNVLSMYGDLIWQSHKDASRAE 209 (223)
Q Consensus 136 ~eA~~~y~~aLel-dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~----d~~~l~~lA~ll~~~~G~~eeAi 209 (223)
++|...|-++-.. .=+++.....+| .+|. ..|.++|+.++-+++++.+. |++++..++.+++. +++++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~-~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALA-TYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK-LKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-hcchhhhh
Confidence 5566555443221 225688888888 4443 68999999999999998755 48999999988888 99999885
No 283
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.91 E-value=1.9 Score=35.44 Aligned_cols=73 Identities=12% Similarity=0.004 Sum_probs=60.2
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 027439 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDAS 206 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~e 206 (223)
..+.++++..+..+--+-|+++.+-..-+ +++.+.+++.+|+.+++...+-.+..+..--.++.+++. ++|.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg-~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a-l~Dp~ 95 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDG-WLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA-KGDAE 95 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHH-HHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh-cCChH
Confidence 35788999999888889999999888888 555578999999999999999888878777777866666 77654
No 284
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.69 E-value=1.9 Score=38.86 Aligned_cols=81 Identities=19% Similarity=0.046 Sum_probs=63.7
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027439 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFD 213 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fe 213 (223)
+|..=+...++.++. ....++..++..+. ..++++.++..+++.++.+|-+-..+..+-.+++. .|+...|+..|+
T Consensus 136 ~f~~WV~~~R~~l~e--~~~~~l~~lae~~~-~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~-~g~~~~ai~~y~ 211 (280)
T COG3629 136 RFDEWVLEQRRALEE--LFIKALTKLAEALI-ACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV-NGRQSAAIRAYR 211 (280)
T ss_pred hHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCchHHHHHHH
Confidence 355555555555543 34567778886666 47999999999999999999999888877777777 999999999999
Q ss_pred HHHHh
Q 027439 214 QAVKA 218 (223)
Q Consensus 214 kAL~l 218 (223)
++-+.
T Consensus 212 ~l~~~ 216 (280)
T COG3629 212 QLKKT 216 (280)
T ss_pred HHHHH
Confidence 98764
No 285
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=90.69 E-value=1.9 Score=39.99 Aligned_cols=88 Identities=9% Similarity=0.078 Sum_probs=66.7
Q ss_pred CCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHcCCH
Q 027439 132 NHGNNSTDLYYQKMIQADPR-NPLLLSNYARFLKEARGDLLKAEEYCARAILMSP-----NDGNVLSMYGDLIWQSHKDA 205 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~-n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP-----~d~~~l~~lA~ll~~~~G~~ 205 (223)
.|.+..|.++.+-.+.+||. ++......-.++..+.++|+--+++++....... .-|+..+..|-+++. .++-
T Consensus 116 RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~-l~~~ 194 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR-LEKE 194 (360)
T ss_pred cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH-hcCc
Confidence 47899999999999999999 7776656666677777899888888887665211 123455666655666 6666
Q ss_pred ---------------HHHHHHHHHHHHhCC
Q 027439 206 ---------------SRAESYFDQAVKAAP 220 (223)
Q Consensus 206 ---------------eeAi~~fekAL~l~P 220 (223)
++|...+++|+...|
T Consensus 195 ~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 195 ESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred cccccccccccccchhHHHHHHHHHHHHhH
Confidence 899999999998876
No 286
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=90.64 E-value=0.8 Score=37.25 Aligned_cols=63 Identities=14% Similarity=0.131 Sum_probs=48.4
Q ss_pred CCChHHHHHHHHHHHH-hCCCCH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027439 132 NHGNNSTDLYYQKMIQ-ADPRNP-LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG 195 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLe-ldP~n~-~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA 195 (223)
..|..+-+.+++..++ ..|... ..++.+|-.++ +.++|++|..++...++.+|+|..+...--
T Consensus 48 ~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~y-RlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~ 112 (149)
T KOG3364|consen 48 TEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHY-RLKEYSKSLRYVDALLETEPNNRQALELKE 112 (149)
T ss_pred hHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHH-HHhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 3578889999999997 555543 44445553455 689999999999999999999998875443
No 287
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=90.44 E-value=3.8 Score=35.69 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=54.3
Q ss_pred ChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---
Q 027439 134 GNNSTDLYYQKMIQADPRN-PLLLSNYARFLKEARG--------DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS--- 201 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP~n-~~~l~nlA~~l~~~~g--------dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~--- 201 (223)
|..+|..+|+++.+..-.. ..+..+++.++. .+ +..+|...|.+|-... ++.+...++.++..-
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~--~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYL--SGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH--cChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCC
Confidence 7788888888888775554 344566664333 23 3347888888887765 667777777544331
Q ss_pred cCCHHHHHHHHHHHHHhC
Q 027439 202 HKDASRAESYFDQAVKAA 219 (223)
Q Consensus 202 ~G~~eeAi~~fekAL~l~ 219 (223)
..++++|+.+|++|-+..
T Consensus 204 ~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 227788888888887654
No 288
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.43 E-value=1.2 Score=43.47 Aligned_cols=85 Identities=20% Similarity=0.191 Sum_probs=54.2
Q ss_pred CCChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHH---hC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 027439 132 NHGNNSTDLYYQKMIQA-----DPRNPLLLSNYARFLKEA---RG-DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH 202 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLel-----dP~n~~~l~nlA~~l~~~---~g-dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~ 202 (223)
.+|.+.|+.+|+.+.+. .-.++.+...+|+++... .. ++..|..+|.+|-.+.. ++..+.+|.++..-.
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~ 339 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLYETGT 339 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCC
Confidence 46888899998888771 111444566777555531 12 67888888888877654 445556775544422
Q ss_pred --CCHHHHHHHHHHHHHh
Q 027439 203 --KDASRAESYFDQAVKA 218 (223)
Q Consensus 203 --G~~eeAi~~fekAL~l 218 (223)
.++.+|..+|..|.+.
T Consensus 340 ~~~d~~~A~~yy~~Aa~~ 357 (552)
T KOG1550|consen 340 KERDYRRAFEYYSLAAKA 357 (552)
T ss_pred ccccHHHHHHHHHHHHHc
Confidence 3466888888887643
No 289
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.39 E-value=2.7 Score=40.95 Aligned_cols=80 Identities=13% Similarity=0.091 Sum_probs=61.4
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----CHH
Q 027439 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR--GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK-----DAS 206 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~--gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G-----~~e 206 (223)
|+..|..+|.++-+....+..+ .+|.++.... .++.+|.++|.+|... .+..+.+.++.+ +. .| +..
T Consensus 308 d~~~A~~~~~~aA~~g~~~a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~-y~-~G~gv~r~~~ 381 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGNPDAQY--LLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALC-YE-LGLGVERNLE 381 (552)
T ss_pred cHHHHHHHHHHHHhcCCchHHH--HHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHH-HH-hCCCcCCCHH
Confidence 7899999999988887666654 6664444323 4678999999999884 567788888854 44 44 888
Q ss_pred HHHHHHHHHHHhC
Q 027439 207 RAESYFDQAVKAA 219 (223)
Q Consensus 207 eAi~~fekAL~l~ 219 (223)
+|..+|++|.+.+
T Consensus 382 ~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHHcc
Confidence 9999999999876
No 290
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.24 E-value=0.18 Score=48.85 Aligned_cols=44 Identities=16% Similarity=0.114 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 027439 155 LLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIW 199 (223)
Q Consensus 155 ~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~ 199 (223)
+++|.| +++...|+.-.|.++|.+|+...-.+|.+|.++|.++.
T Consensus 337 ilYNcG-~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 337 ILYNCG-LLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred hHHhhh-HHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 344444 22323455555555555555555555555555554443
No 291
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.22 E-value=2.8 Score=39.61 Aligned_cols=87 Identities=11% Similarity=0.134 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-
Q 027439 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARG-----------DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK- 203 (223)
Q Consensus 136 ~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~g-----------dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G- 203 (223)
++++++=.+.++.+|+...+|+..-.++..++- -.++-+.+.+.+++.+|+...+|....+++.. +.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~-~p~ 124 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQK-NPH 124 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-CCC
Confidence 568888888889999998888665544433222 24566778899999999999999999998876 44
Q ss_pred -CHHHHHHHHHHHHHhCCCCC
Q 027439 204 -DASRAESYFDQAVKAAPDDW 223 (223)
Q Consensus 204 -~~eeAi~~fekAL~l~Pdn~ 223 (223)
++..-+..++++++.+|.||
T Consensus 125 ~~~~~EL~lcek~L~~D~RNf 145 (421)
T KOG0529|consen 125 SDWNTELQLCEKALKQDPRNF 145 (421)
T ss_pred chHHHHHHHHHHHHhcCcccc
Confidence 36899999999999999887
No 292
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.17 E-value=0.88 Score=40.71 Aligned_cols=59 Identities=19% Similarity=0.037 Sum_probs=46.5
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 163 LKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 163 l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
.+.+.++++.|..+.++.+.++|+++.-+..-|-++.. .+.+.-|+..++..++.-|++
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~q-l~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQ-LGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHh-cCCchhhHHHHHHHHHhCCCc
Confidence 34456888888888888888888888888888865555 888888888888887777664
No 293
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=89.84 E-value=3.8 Score=35.63 Aligned_cols=81 Identities=20% Similarity=0.251 Sum_probs=63.1
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-------
Q 027439 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA---RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK------- 203 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~---~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G------- 203 (223)
+...|...|.++-... ++.+..++|.++..- ..++++|..+|.+|-+... ...++.++ +++. .|
T Consensus 170 ~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~-~g~g~~~~~ 243 (292)
T COG0790 170 DDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYL-NGEGVKKAA 243 (292)
T ss_pred HHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHh-cCCCchhhh
Confidence 4458999999988877 777788899544431 2489999999999999876 88888888 6676 56
Q ss_pred --------CHHHHHHHHHHHHHhCC
Q 027439 204 --------DASRAESYFDQAVKAAP 220 (223)
Q Consensus 204 --------~~eeAi~~fekAL~l~P 220 (223)
+...|..+++++-...+
T Consensus 244 ~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 244 FLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred hcccccCCCHHHHHHHHHHHHHcCC
Confidence 88889999988876543
No 294
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.81 E-value=1.3 Score=43.13 Aligned_cols=76 Identities=17% Similarity=0.145 Sum_probs=49.2
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD 204 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~ 204 (223)
.|-++.+.+.|.-+..+|.+|++ .+...+.+ | +..+ ..| .+ .......++++.|.+++. .|+
T Consensus 289 lGcIh~~~~~y~~~~~~F~kAL~------N~c~qL~~------g-~~~~-~~~--tl-s~nks~eilYNcG~~~Lh-~gr 350 (696)
T KOG2471|consen 289 LGCIHYQLGCYQASSVLFLKALR------NSCSQLRN------G-LKPA-KTF--TL-SQNKSMEILYNCGLLYLH-SGR 350 (696)
T ss_pred cceEeeehhhHHHHHHHHHHHHH------HHHHHHhc------c-CCCC-cce--eh-hcccchhhHHhhhHHHHh-cCC
Confidence 34556677899999999999997 11122221 1 0000 000 01 123457788999966666 999
Q ss_pred HHHHHHHHHHHHHh
Q 027439 205 ASRAESYFDQAVKA 218 (223)
Q Consensus 205 ~eeAi~~fekAL~l 218 (223)
.-.|.+.|++++..
T Consensus 351 Pl~AfqCf~~av~v 364 (696)
T KOG2471|consen 351 PLLAFQCFQKAVHV 364 (696)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999999876
No 295
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.78 E-value=2.6 Score=42.19 Aligned_cols=85 Identities=7% Similarity=-0.049 Sum_probs=60.7
Q ss_pred CCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 027439 132 NHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDA 205 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~n------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ 205 (223)
.++|..+++.|...++.-|.+ +....+++ ++|..+.+.++|.++++.|=+.+|.++--...+.-+... .+.-
T Consensus 367 ~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~-~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~-E~~S 444 (872)
T KOG4814|consen 367 MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQ-VCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA-EDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH-hcch
Confidence 368888888888888765543 44556666 556567888888888888888888887665555544444 7788
Q ss_pred HHHHHHHHHHHHh
Q 027439 206 SRAESYFDQAVKA 218 (223)
Q Consensus 206 eeAi~~fekAL~l 218 (223)
++|+....+....
T Consensus 445 e~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 445 EEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHhh
Confidence 8888877766543
No 296
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.66 E-value=4 Score=36.01 Aligned_cols=67 Identities=12% Similarity=0.032 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHh------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC----------------CHHHHHHH
Q 027439 154 LLLSNYARFLKEAR------GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK----------------DASRAESY 211 (223)
Q Consensus 154 ~~l~nlA~~l~~~~------gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G----------------~~eeAi~~ 211 (223)
.++..+|.++.. . .+++++...|.+|+.++|+...+++.+|..+..... -...|+..
T Consensus 253 ~~~l~~a~w~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~ 331 (352)
T PF02259_consen 253 KAFLLLAKWLDE-LYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEG 331 (352)
T ss_pred HHHHHHHHHHHh-hccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHH
Confidence 456677766654 5 788999999999999999999999999977433211 11358888
Q ss_pred HHHHHHhCCC
Q 027439 212 FDQAVKAAPD 221 (223)
Q Consensus 212 fekAL~l~Pd 221 (223)
|-+++...++
T Consensus 332 y~~al~~~~~ 341 (352)
T PF02259_consen 332 YLKALSLGSK 341 (352)
T ss_pred HHHHHhhCCC
Confidence 8888888765
No 297
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=89.66 E-value=3.4 Score=39.33 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439 169 DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD 221 (223)
Q Consensus 169 dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd 221 (223)
|...|...-.+++++.|+....-..-+..++. .|+..++-..++.+++.+|.
T Consensus 244 dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~-d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 244 DPASARDDALEANKLAPDLVPAAVVAARALFR-DGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred ChHHHHHHHHHHhhcCCccchHHHHHHHHHHh-ccchhhhhhHHHHHHhcCCC
Confidence 44445555556666777766666666666666 77777777777777777663
No 298
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.63 E-value=3 Score=41.00 Aligned_cols=89 Identities=12% Similarity=0.133 Sum_probs=76.2
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF 212 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~f 212 (223)
.+.+.+...|...+...|.---+|..+|..-+ +.+..+++++.|++++..-|-....|..|-..+-...++.+.-...|
T Consensus 59 ~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~-klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~f 137 (577)
T KOG1258|consen 59 EDVDALREVYDIFLSKYPLCYGYWKKFADYEY-KLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLF 137 (577)
T ss_pred hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 35578888899999999999999999996555 58999999999999999999999999888877777788999999999
Q ss_pred HHHHHhCCCC
Q 027439 213 DQAVKAAPDD 222 (223)
Q Consensus 213 ekAL~l~Pdn 222 (223)
++|+...--+
T Consensus 138 e~A~~~vG~d 147 (577)
T KOG1258|consen 138 ERAKSYVGLD 147 (577)
T ss_pred HHHHHhcccc
Confidence 9998765433
No 299
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.59 E-value=1.7 Score=42.14 Aligned_cols=87 Identities=15% Similarity=0.061 Sum_probs=70.6
Q ss_pred ChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHHcC
Q 027439 134 GNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMS---PND----GNVLSMYGDLIWQSHK 203 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld---P~d----~~~l~~lA~ll~~~~G 203 (223)
+...+++|++..+...|.. +....++|..++....+++.|..++++|+.+. |+. .++...++.++.....
T Consensus 24 kIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~ 103 (629)
T KOG2300|consen 24 KIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQ 103 (629)
T ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcC
Confidence 6789999999999888775 46678899888888899999999999998765 443 2456677777776555
Q ss_pred CHHHHHHHHHHHHHhCC
Q 027439 204 DASRAESYFDQAVKAAP 220 (223)
Q Consensus 204 ~~eeAi~~fekAL~l~P 220 (223)
.+..|...+++|+++..
T Consensus 104 s~~~~KalLrkaielsq 120 (629)
T KOG2300|consen 104 SFPPAKALLRKAIELSQ 120 (629)
T ss_pred CCchHHHHHHHHHHHhc
Confidence 88899999999998854
No 300
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=89.49 E-value=1.6 Score=39.13 Aligned_cols=63 Identities=11% Similarity=0.092 Sum_probs=55.9
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGD 196 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ 196 (223)
++++.|..+.++.+.++|.++.-+...| .+|.+++.+.-|++-++..++..|+++.+...-+.
T Consensus 195 ~~~~~al~~~~r~l~l~P~dp~eirDrG-liY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 195 LQWELALRVAERLLDLNPEDPYEIRDRG-LIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred hchHHHHHHHHHHHhhCCCChhhccCcH-HHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 7889999999999999999999999999 55557999999999999999999999987665553
No 301
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.09 E-value=3.3 Score=37.34 Aligned_cols=84 Identities=17% Similarity=0.173 Sum_probs=73.7
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 027439 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLL-KAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF 212 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdye-eA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~f 212 (223)
+..+-..++.+.++.+|.|-.+|..+- ++-+..+++. .-++++.+++..+..|..+|...-+++.. -+.++.-+++.
T Consensus 93 dL~~El~~l~eI~e~npKNYQvWHHRr-~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~-F~~~~~EL~y~ 170 (318)
T KOG0530|consen 93 DLNKELEYLDEIIEDNPKNYQVWHHRR-VIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRF-FKDYEDELAYA 170 (318)
T ss_pred HHHHHHHHHHHHHHhCccchhHHHHHH-HHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHH-HhhHHHHHHHH
Confidence 677888999999999999999998887 5555688887 88899999999999999999999988877 67799999999
Q ss_pred HHHHHhC
Q 027439 213 DQAVKAA 219 (223)
Q Consensus 213 ekAL~l~ 219 (223)
.+.++.+
T Consensus 171 ~~Lle~D 177 (318)
T KOG0530|consen 171 DELLEED 177 (318)
T ss_pred HHHHHHh
Confidence 9988775
No 302
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.00 E-value=3.8 Score=33.95 Aligned_cols=55 Identities=20% Similarity=0.099 Sum_probs=49.2
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439 166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD 221 (223)
Q Consensus 166 ~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd 221 (223)
+.++.++++.++...-.+.|+.+.+...-++++.. .|++.+|+..|+.+....|.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~-r~~w~dA~rlLr~l~~~~~~ 76 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV-RGDWDDALRLLRELEERAPG 76 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCCHHHHHHHHHHHhccCCC
Confidence 46899999999999999999999999999988887 99999999999998776654
No 303
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.76 E-value=1.3 Score=44.22 Aligned_cols=89 Identities=12% Similarity=0.152 Sum_probs=70.3
Q ss_pred cCCCChHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 027439 130 PNNHGNNSTDLYYQKMIQADPR------------------NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVL 191 (223)
Q Consensus 130 ~~~gd~~eA~~~y~~aLeldP~------------------n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l 191 (223)
...++++.|..++++|..+--. ...+|..|+. |-+-.|-++.-...|++.|.+.--.|.+.
T Consensus 436 lrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D-leEs~gtfestk~vYdriidLriaTPqii 514 (835)
T KOG2047|consen 436 LRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD-LEESLGTFESTKAVYDRIIDLRIATPQII 514 (835)
T ss_pred HhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH-HHHHhccHHHHHHHHHHHHHHhcCCHHHH
Confidence 3456788888888887764211 2356888884 44457999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 027439 192 SMYGDLIWQSHKDASRAESYFDQAVKAAP 220 (223)
Q Consensus 192 ~~lA~ll~~~~G~~eeAi~~fekAL~l~P 220 (223)
.+||.++-. +.-+++|.+.|+|.+.+.+
T Consensus 515 ~NyAmfLEe-h~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 515 INYAMFLEE-HKYFEESFKAYERGISLFK 542 (835)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHcCCccCC
Confidence 999976666 8889999999999887753
No 304
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.64 E-value=0.61 Score=26.36 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 027439 190 VLSMYGDLIWQSHKDASRAESYFD 213 (223)
Q Consensus 190 ~l~~lA~ll~~~~G~~eeAi~~fe 213 (223)
++..+|.+++. .|++++|+..++
T Consensus 3 a~~~la~~~~~-~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLA-QGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHh
Confidence 44455555555 566666655554
No 305
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.34 E-value=1.8 Score=26.75 Aligned_cols=33 Identities=15% Similarity=0.081 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHH--HHHHHHhCCCC
Q 027439 154 LLLSNYARFLKEARGDLLKAEEY--CARAILMSPND 187 (223)
Q Consensus 154 ~~l~nlA~~l~~~~gdyeeA~~~--~ekAL~ldP~d 187 (223)
+.+..+|..++ .++++++|+.+ |.-+..+++.|
T Consensus 2 e~~y~~a~~~y-~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFY-QKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhcccC
Confidence 45677886666 58999999999 55888888764
No 306
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=87.88 E-value=2.4 Score=43.78 Aligned_cols=57 Identities=21% Similarity=0.367 Sum_probs=43.6
Q ss_pred ccccccCCCChHHHHHHHHHHHH---------------------hCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQ---------------------ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL 182 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLe---------------------ldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ 182 (223)
||...++.|+++.|+.+|..|-. ....|..+.+.+|+ .|+..+++.+|+.+|.||-.
T Consensus 918 WgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR-~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 918 WGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLAR-MYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHH-HhhhhHHHHHHHHHHHHHHH
Confidence 77788888999999999987654 23456666778885 44467999999999988744
No 307
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.86 E-value=9.8 Score=33.51 Aligned_cols=89 Identities=11% Similarity=0.082 Sum_probs=53.8
Q ss_pred CCCChHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHh----CC---CC-------
Q 027439 131 NNHGNNSTDLYYQKMIQAD-PRNP-------LLLSNYARFLKEARG-DLLKAEEYCARAILM----SP---ND------- 187 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLeld-P~n~-------~~l~nlA~~l~~~~g-dyeeA~~~~ekAL~l----dP---~d------- 187 (223)
.++|++.|..+|.++-... ..++ ..+++.|..++. .+ +++.|+..+++|+++ .+ ..
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~-~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS-KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 3568899999998887655 3333 345555555553 57 899999998888877 21 11
Q ss_pred HHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCC
Q 027439 188 GNVLSMYGDLIWQSHKDAS---RAESYFDQAVKAAPD 221 (223)
Q Consensus 188 ~~~l~~lA~ll~~~~G~~e---eAi~~fekAL~l~Pd 221 (223)
..++..++.++.. .+.++ +|..+++.+....|+
T Consensus 84 ~~iL~~La~~~l~-~~~~~~~~ka~~~l~~l~~e~~~ 119 (278)
T PF08631_consen 84 LSILRLLANAYLE-WDTYESVEKALNALRLLESEYGN 119 (278)
T ss_pred HHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhCCC
Confidence 2345566655555 44443 455555555444443
No 308
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=87.53 E-value=5 Score=39.49 Aligned_cols=89 Identities=13% Similarity=0.152 Sum_probs=73.0
Q ss_pred CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHH
Q 027439 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS-PNDGNVLSMYGDLIWQSHKDASRAE 209 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld-P~d~~~l~~lA~ll~~~~G~~eeAi 209 (223)
..|+++...-.|++.+--.-....+|.+|+.++-. .++.+-|...+.++.++. |.-+.++..+|.+ -..+|++..|.
T Consensus 309 ~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~-~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f-~e~~~n~~~A~ 386 (577)
T KOG1258|consen 309 TLGDFSRVFILFERCLIPCALYDEFWIKYARWMES-SGDVSLANNVLARACKIHVKKTPIIHLLEARF-EESNGNFDDAK 386 (577)
T ss_pred hcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHH-cCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH-HHhhccHHHHH
Confidence 45899999999999999999999999999988875 699999998888887765 6666777777754 44489999999
Q ss_pred HHHHHHHHhCCC
Q 027439 210 SYFDQAVKAAPD 221 (223)
Q Consensus 210 ~~fekAL~l~Pd 221 (223)
..+++....-|+
T Consensus 387 ~~lq~i~~e~pg 398 (577)
T KOG1258|consen 387 VILQRIESEYPG 398 (577)
T ss_pred HHHHHHHhhCCc
Confidence 999998765553
No 309
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.36 E-value=1.1 Score=28.17 Aligned_cols=29 Identities=14% Similarity=0.406 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439 189 NVLSMYGDLIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 189 ~~l~~lA~ll~~~~G~~eeAi~~fekAL~l 218 (223)
+++..+|.+-.. ..+|+.|+.-|++++++
T Consensus 2 dv~~~Lgeisle-~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLE-NENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence 456777877777 78888888888888765
No 310
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.87 E-value=5.3 Score=35.24 Aligned_cols=89 Identities=15% Similarity=0.233 Sum_probs=61.0
Q ss_pred CCCChHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-C-C------------------
Q 027439 131 NNHGNNSTDLYYQKMIQADP----RNPLLLSNYARFLKEARGDLLKAEEYCARAILMS-P-N------------------ 186 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLeldP----~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld-P-~------------------ 186 (223)
..|.++.|..++.++...++ ..+.+....++.+.. .|+..+|+..++..+... . .
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~-~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA-QGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLE 236 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccc
Confidence 45788888888888887652 246667778877774 788889988888887711 1 0
Q ss_pred --------------CHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCC
Q 027439 187 --------------DGNVLSMYGDLIWQSH------KDASRAESYFDQAVKAAPD 221 (223)
Q Consensus 187 --------------d~~~l~~lA~ll~~~~------G~~eeAi~~fekAL~l~Pd 221 (223)
-..++..+|..+.. . +..++++..|++|++.+|+
T Consensus 237 ~~~~~~~~~~~~~~~a~~~l~~a~w~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~ 290 (352)
T PF02259_consen 237 VISSTNLDKESKELKAKAFLLLAKWLDE-LYSKLSSESSDEILKYYKEATKLDPS 290 (352)
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHh-hccccccccHHHHHHHHHHHHHhChh
Confidence 12334444444434 4 7788888999999888775
No 311
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=86.68 E-value=3.9 Score=30.07 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=39.3
Q ss_pred CCChHHHHHHHHHHHHhCC----CC-----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 027439 132 NHGNNSTDLYYQKMIQADP----RN-----PLLLSNYARFLKEARGDLLKAEEYCARAILMS 184 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP----~n-----~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld 184 (223)
.+||.+|.+.+.+.+.... .. ..++.++|.... ..|++++|+..+++|+.+-
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~-~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHR-RFGHYEEALQALEEAIRLA 71 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHH
Confidence 5799999888888776422 22 456778885555 5899999999999998874
No 312
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=86.54 E-value=3.3 Score=34.34 Aligned_cols=49 Identities=22% Similarity=0.269 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439 171 LKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD 221 (223)
Q Consensus 171 eeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd 221 (223)
+..++..++.++..| ++.++..++.++.. +|+.++|....+++..+.|.
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~-~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALAL-LGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCc
Confidence 445566677777777 67777888866666 88888888888888877773
No 313
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.52 E-value=7.3 Score=38.54 Aligned_cols=88 Identities=17% Similarity=0.172 Sum_probs=64.5
Q ss_pred CCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHHHHHHcC--
Q 027439 132 NHGNNSTDLYYQKMIQADPR-NPLLLSNYARFLKEARGDLLKAEEYCARA-----ILMSPNDGNVLSMYGDLIWQSHK-- 203 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~-n~~~l~nlA~~l~~~~gdyeeA~~~~ekA-----L~ldP~d~~~l~~lA~ll~~~~G-- 203 (223)
.|-+..|.++++-.+.++|. ++.+...+-.++..+..+|+=-+++++.. +.+-|+.+..+ .+|.++.....
T Consensus 355 RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~-AlA~f~l~~~~~~ 433 (665)
T KOG2422|consen 355 RGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSL-ALARFFLRKNEED 433 (665)
T ss_pred cCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHH-HHHHHHHhcCChh
Confidence 47888999999999999999 88887777777777778887777776665 44457655333 34444444233
Q ss_pred CHHHHHHHHHHHHHhCC
Q 027439 204 DASRAESYFDQAVKAAP 220 (223)
Q Consensus 204 ~~eeAi~~fekAL~l~P 220 (223)
..+.|...+++|+++.|
T Consensus 434 ~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 434 DRQSALNALLQALKHHP 450 (665)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 25789999999999887
No 314
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=85.61 E-value=3.6 Score=42.48 Aligned_cols=84 Identities=25% Similarity=0.323 Sum_probs=58.7
Q ss_pred CCChHHHHHHHHHHHHhCCCC------------------------HHHHHHHHHHHHHHhCCHHHHHHHHHHH-------
Q 027439 132 NHGNNSTDLYYQKMIQADPRN------------------------PLLLSNYARFLKEARGDLLKAEEYCARA------- 180 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~n------------------------~~~l~nlA~~l~~~~gdyeeA~~~~ekA------- 180 (223)
.+-.++|+.+|++.-+.|=-| -..|+++|..+-. .+|.+.|+++|+|+
T Consensus 813 LgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea-r~Di~~AleyyEK~~~hafev 891 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA-RRDIEAALEYYEKAGVHAFEV 891 (1416)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh-hccHHHHHHHHHhcCChHHHH
Confidence 466777777777654432111 2457899977775 68999999999964
Q ss_pred ---HHhCC----------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027439 181 ---ILMSP----------NDGNVLSMYGDLIWQSHKDASRAESYFDQAVK 217 (223)
Q Consensus 181 ---L~ldP----------~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~ 217 (223)
+.-+| .|+..|..+| .|+...|+.+.|+.+|..|-.
T Consensus 892 ~rmL~e~p~~~e~Yv~~~~d~~L~~WWg-qYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 892 FRMLKEYPKQIEQYVRRKRDESLYSWWG-QYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHhChHHHHHHHHhccchHHHHHHH-HHHhcccchHHHHHHHHHhhh
Confidence 22233 3566777777 577779999999999998853
No 315
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=84.88 E-value=7.5 Score=38.30 Aligned_cols=83 Identities=13% Similarity=0.155 Sum_probs=67.7
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF 212 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~f 212 (223)
+-++++.+.|++.+...|..+.+|..+....+ +.++|+..+.+|.|++.--= +.+.|..|-....+..++...+....
T Consensus 33 ~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El-~skdfe~VEkLF~RCLvkvL-nlDLW~lYl~YVR~~~~~~~~~r~~m 110 (656)
T KOG1914|consen 33 QPIDKVRETYEQLVNVFPSSPRAWKLYIEREL-ASKDFESVEKLFSRCLVKVL-NLDLWKLYLSYVRETKGKLFGYREKM 110 (656)
T ss_pred CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHh-hHhHHHHHHHHHHHHccCcchHHHHH
Confidence 47899999999999999999999999997777 47999999999999988533 57788888777777777777766666
Q ss_pred HHHHH
Q 027439 213 DQAVK 217 (223)
Q Consensus 213 ekAL~ 217 (223)
-+|.+
T Consensus 111 ~qAy~ 115 (656)
T KOG1914|consen 111 VQAYD 115 (656)
T ss_pred HHHHH
Confidence 55543
No 316
>PLN03138 Protein TOC75; Provisional
Probab=83.35 E-value=0.89 Score=46.32 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhCCCC
Q 027439 171 LKAEEYCARAILMSPND 187 (223)
Q Consensus 171 eeA~~~~ekAL~ldP~d 187 (223)
...++.+.+++.+.|..
T Consensus 164 ~~~e~~l~~~i~~kpG~ 180 (796)
T PLN03138 164 VGTEDSFFEMVTLRPGG 180 (796)
T ss_pred cchHHHHHHHHhcCCCC
Confidence 34556677777777763
No 317
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.27 E-value=9 Score=31.76 Aligned_cols=63 Identities=22% Similarity=0.173 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439 154 LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG---NVLSMYGDLIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 154 ~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~---~~l~~lA~ll~~~~G~~eeAi~~fekAL~l 218 (223)
.++..+|.++. +.|++++|++.|.++..-.-... +.+..+-.+.+. .+++.....++.||-.+
T Consensus 37 ~~~~~l~~~~~-~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYC-KIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-FGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHH-HhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHH
Confidence 56789997666 58999999999999888654433 334445555666 89999999999998654
No 318
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.23 E-value=12 Score=33.64 Aligned_cols=81 Identities=14% Similarity=0.071 Sum_probs=45.5
Q ss_pred CChHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH---H---HHHHHHHHHHH
Q 027439 133 HGNNSTDLYYQKMIQAD-----PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGN---V---LSMYGDLIWQS 201 (223)
Q Consensus 133 gd~~eA~~~y~~aLeld-----P~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~---~---l~~lA~ll~~~ 201 (223)
..+.+++.+|+++..+. |+.+..-...|.-+.+ +.+.++|+.+|++++.+--.+.. + +...+.++.+
T Consensus 85 ~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~le-nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr- 162 (308)
T KOG1585|consen 85 SKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALE-NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR- 162 (308)
T ss_pred HHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh-
Confidence 45566777777776652 3333222222222332 56788888888888776443322 2 2233333455
Q ss_pred cCCHHHHHHHHHHH
Q 027439 202 HKDASRAESYFDQA 215 (223)
Q Consensus 202 ~G~~eeAi~~fekA 215 (223)
..++.+|-..|.|-
T Consensus 163 l~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 163 LEKFTEAATAFLKE 176 (308)
T ss_pred hHHhhHHHHHHHHh
Confidence 77788887777663
No 319
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=82.15 E-value=4.8 Score=38.87 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=44.0
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027439 163 LKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQA 215 (223)
Q Consensus 163 l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekA 215 (223)
+| -+|+|.++.-+..=..++.| .+.++..+|-+++. +.+|++|-.++...
T Consensus 472 Ly-sqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e-~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 472 LY-SQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLME-NKRYQEAWEYLQKL 521 (549)
T ss_pred HH-hcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHH-HhhHHHHHHHHHhC
Confidence 45 37999999999999999999 89999999977777 99999999988754
No 320
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=82.07 E-value=9.6 Score=32.70 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHH
Q 027439 135 NNSTDLYYQKMIQADPR------NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG-NVLSMYGD 196 (223)
Q Consensus 135 ~~eA~~~y~~aLeldP~------n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~-~~l~~lA~ 196 (223)
+.+|...|+++++.... ...++..+| .+..+.|++++|.++|.+++...-... ..+..+|.
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLig-eL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIG-ELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 35688888888875533 245666777 555589999999999999998543222 24445553
No 321
>COG4907 Predicted membrane protein [Function unknown]
Probab=81.62 E-value=1 Score=43.15 Aligned_cols=10 Identities=30% Similarity=0.597 Sum_probs=5.8
Q ss_pred CCCCCccccc
Q 027439 19 KDSSPVPFTL 28 (223)
Q Consensus 19 ~~~~~~~~~~ 28 (223)
||.+||.|.+
T Consensus 502 ke~~pesI~~ 511 (595)
T COG4907 502 KEAKPESIHL 511 (595)
T ss_pred hhCCCcceeh
Confidence 4567775444
No 322
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=81.41 E-value=1.3 Score=41.09 Aligned_cols=25 Identities=44% Similarity=0.699 Sum_probs=15.0
Q ss_pred ceeeeccccCCCCCCCCCCCCCCCC
Q 027439 94 IGVLVGGGIYGGGGNMCGGGGGSDG 118 (223)
Q Consensus 94 ~~~~~g~g~~g~gg~~~g~~~g~~g 118 (223)
.++-.||+-+|.||.+.|.++|++|
T Consensus 351 ~~~eqgg~Rgg~Gg~~gGrGgGRGg 375 (465)
T KOG3973|consen 351 QVLEQGGSRGGSGGNWGGRGGGRGG 375 (465)
T ss_pred chhhccCCCCCCCCCCCCCCCCCCC
Confidence 4454565556666667776666643
No 323
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.21 E-value=21 Score=35.12 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--CCHHH----HHHHHHHHHHHcCCH
Q 027439 136 NSTDLYYQKMIQADPR----NPLLLSNYARFLKEARGDLLKAEEYCARAILMSP--NDGNV----LSMYGDLIWQSHKDA 205 (223)
Q Consensus 136 ~eA~~~y~~aLeldP~----n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP--~d~~~----l~~lA~ll~~~~G~~ 205 (223)
..|+.|++-+++..+- .+.++..||..|+....++++|+.+++|++.+.. +..+. .+.++.++.+ .+..
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~-~~~~ 116 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK-TNPK 116 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-cCHH
Confidence 4577777777742222 2567888888888777889999999999877763 33322 2234444444 3333
Q ss_pred HHHHHHHHHHHHh
Q 027439 206 SRAESYFDQAVKA 218 (223)
Q Consensus 206 eeAi~~fekAL~l 218 (223)
.|+.+++++++.
T Consensus 117 -~a~~~l~~~I~~ 128 (608)
T PF10345_consen 117 -AALKNLDKAIED 128 (608)
T ss_pred -HHHHHHHHHHHH
Confidence 388888887765
No 324
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.00 E-value=16 Score=26.84 Aligned_cols=54 Identities=11% Similarity=0.072 Sum_probs=37.3
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHHcCCHHHHHHHHHHHHH
Q 027439 162 FLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL---IWQSHKDASRAESYFDQAVK 217 (223)
Q Consensus 162 ~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l---l~~~~G~~eeAi~~fekAL~ 217 (223)
-+|. ..+.++|+..++++++..++.+.-+..+|.+ +.. .|+|.+++++-.+=+.
T Consensus 15 kLY~-~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e-~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 15 KLYH-QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHME-WGKYREMLAFALQQLE 71 (80)
T ss_pred HHhc-cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3553 6788889999999998888777666666654 333 6777777766555443
No 325
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.52 E-value=2.4 Score=23.87 Aligned_cols=25 Identities=36% Similarity=0.239 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 027439 154 LLLSNYARFLKEARGDLLKAEEYCAR 179 (223)
Q Consensus 154 ~~l~nlA~~l~~~~gdyeeA~~~~ek 179 (223)
.+..++|..+. .+|++++|+..+++
T Consensus 2 ~a~~~la~~~~-~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALL-AQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHhC
Confidence 35678897777 58999999998864
No 326
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.62 E-value=9.7 Score=34.93 Aligned_cols=59 Identities=17% Similarity=0.084 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027439 156 LSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAV 216 (223)
Q Consensus 156 l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL 216 (223)
++-.+.++. ..+.+.+|+.++++++.++|-+...+..+-.++.. .|+--.|+..|++.-
T Consensus 282 lgkva~~yl-e~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~-~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYL-EAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLAT-LGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHH-HcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-hccchhhhhHHHHHH
Confidence 334444444 47999999999999999999998888877766666 898778887777653
No 327
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.56 E-value=5.8 Score=39.54 Aligned_cols=64 Identities=9% Similarity=0.023 Sum_probs=53.5
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL 197 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l 197 (223)
+-...|-.++.+++.++-..+.++..+|+.+. .+.+.++|++.+++|+..+|+++..-..+-.+
T Consensus 656 ~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l-~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 656 GLHLDATKLLLQALAINSSEPLTFLSLGNAYL-ALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred hhhccHHHHHHHHHhhcccCchHHHhcchhHH-HHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 34456888999999999888999999997666 48999999999999999999999876555433
No 328
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=79.24 E-value=1.1 Score=41.56 Aligned_cols=91 Identities=14% Similarity=-0.011 Sum_probs=69.5
Q ss_pred cCCCChHHHHHHHHHHHHhCC-----------C--------CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 027439 130 PNNHGNNSTDLYYQKMIQADP-----------R--------NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV 190 (223)
Q Consensus 130 ~~~gd~~eA~~~y~~aLeldP-----------~--------n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~ 190 (223)
++.+++.+|..-|.++++.-. + -.....+++.+-. ..+.+..|...+..+++.++....+
T Consensus 233 ~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~l-k~~~~~~a~~~~~~~~~~~~s~tka 311 (372)
T KOG0546|consen 233 FKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGL-KVKGRGGARFRTNEALRDERSKTKA 311 (372)
T ss_pred hhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcc-cccCCCcceeccccccccChhhCcH
Confidence 345788888888888875311 1 1123445554433 4688999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 191 LSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 191 l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
++..+..+.. ..++++|++.++.+.+..|++
T Consensus 312 ~~Rr~~~~~~-~~~~~~a~~~~~~a~~~~p~d 342 (372)
T KOG0546|consen 312 HYRRGQAYKL-LKNYDEALEDLKKAKQKAPND 342 (372)
T ss_pred HHHHHhHHHh-hhchhhhHHHHHHhhccCcch
Confidence 9999977666 899999999999999988876
No 329
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=77.68 E-value=11 Score=39.40 Aligned_cols=91 Identities=10% Similarity=-0.033 Sum_probs=67.0
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHH---hC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027439 130 PNNHGNNSTDLYYQKMIQADPRNP---LLLSNYARFLKEA---RG---DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200 (223)
Q Consensus 130 ~~~gd~~eA~~~y~~aLeldP~n~---~~l~nlA~~l~~~---~g---dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~ 200 (223)
...+.|++|+..|++.-..-|... .+..+.|..+.++ .+ .+++|+..|++... .|.-|-=+..-|-+|..
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 564 (932)
T PRK13184 486 LAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALVYQR 564 (932)
T ss_pred HhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHHHHH
Confidence 445789999999999999998865 4455666444432 12 47888888887765 46666666667755555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC
Q 027439 201 SHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 201 ~~G~~eeAi~~fekAL~l~Pdn 222 (223)
++++++-++.|.-|++.-|++
T Consensus 565 -~~~~~~~~~~~~~~~~~~~~~ 585 (932)
T PRK13184 565 -LGEYNEEIKSLLLALKRYSQH 585 (932)
T ss_pred -hhhHHHHHHHHHHHHHhcCCC
Confidence 999999999999999987763
No 330
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.53 E-value=16 Score=30.04 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=47.2
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 027439 166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAA 219 (223)
Q Consensus 166 ~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~ 219 (223)
...+.++++.++...-.+.|+.+.+...-++++.. .|++.+|+..|+.+....
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~-rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIA-RGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHH-cCCHHHHHHHHHhhhccC
Confidence 36899999999999999999999999888888777 999999999999886544
No 331
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.13 E-value=26 Score=30.17 Aligned_cols=57 Identities=23% Similarity=0.128 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027439 156 LSNYARFLKEARGDLLKAEEYCARAILMSPNDG----NVLSMYGDLIWQSHKDASRAESYFDQA 215 (223)
Q Consensus 156 l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~----~~l~~lA~ll~~~~G~~eeAi~~fekA 215 (223)
...+|....+ .+++++|+..++.++.. |.|. -+-.++|.+.+. ++.+++|+..+...
T Consensus 92 aL~lAk~~ve-~~~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q-~~k~D~AL~~L~t~ 152 (207)
T COG2976 92 ALELAKAEVE-ANNLDKAEAQLKQALAQ-TKDENLKALAALRLARVQLQ-QKKADAALKTLDTI 152 (207)
T ss_pred HHHHHHHHHh-hccHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHH-hhhHHHHHHHHhcc
Confidence 3344544554 68999999999999974 4443 345677877777 99999999887754
No 332
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=76.96 E-value=7.6 Score=37.30 Aligned_cols=81 Identities=9% Similarity=-0.043 Sum_probs=59.0
Q ss_pred cCCCChHHHHHHHHHHHHhC--------CCCH----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 027439 130 PNNHGNNSTDLYYQKMIQAD--------PRNP----------LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVL 191 (223)
Q Consensus 130 ~~~gd~~eA~~~y~~aLeld--------P~n~----------~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l 191 (223)
...++|..|...|+.++++. |..+ .+-..+. .+|.+.++.+.|+....+.|.++|.+..-+
T Consensus 187 yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv-~CYL~~rkpdlALnh~hrsI~lnP~~frnH 265 (569)
T PF15015_consen 187 YRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLV-TCYLRMRKPDLALNHSHRSINLNPSYFRNH 265 (569)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHH-HhhhhcCCCchHHHHHhhhhhcCcchhhHH
Confidence 34468888888898888863 2221 1233444 456678999999999999999999999888
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 027439 192 SMYGDLIWQSHKDASRAESYF 212 (223)
Q Consensus 192 ~~lA~ll~~~~G~~eeAi~~f 212 (223)
..-| ++++.+.+|.+|-.-+
T Consensus 266 LrqA-avfR~LeRy~eAarSa 285 (569)
T PF15015_consen 266 LRQA-AVFRRLERYSEAARSA 285 (569)
T ss_pred HHHH-HHHHHHHHHHHHHHHH
Confidence 8888 4555588888775433
No 333
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=76.40 E-value=5.1 Score=29.01 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=16.6
Q ss_pred HHhCCHHHHHHHHHHHHHhC
Q 027439 165 EARGDLLKAEEYCARAILMS 184 (223)
Q Consensus 165 ~~~gdyeeA~~~~ekAL~ld 184 (223)
...++|++|..+|..|++..
T Consensus 17 D~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 17 DEKGNAEEAIELYTEAVELC 36 (75)
T ss_pred hHhhhHHHHHHHHHHHHHHH
Confidence 34689999999999998853
No 334
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.13 E-value=7.8 Score=34.24 Aligned_cols=63 Identities=21% Similarity=0.136 Sum_probs=49.5
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027439 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYG 195 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA 195 (223)
.+...+|+...+.-++.+|.+......|=..|. ..|++++|...|+-+-.+.|++..-...|-
T Consensus 14 ~~sL~dai~~a~~qVkakPtda~~RhflfqLlc-vaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr 76 (273)
T COG4455 14 DNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLC-VAGDWEKALAQLNLAATLSPQDTVGASLYR 76 (273)
T ss_pred hccHHHHHHHHHHHHhcCCccccchhHHHHHHh-hcchHHHHHHHHHHHhhcCcccchHHHHHH
Confidence 356788999999999999999887776665444 579999999999999999998764443333
No 335
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=75.97 E-value=8.7 Score=34.59 Aligned_cols=54 Identities=9% Similarity=-0.047 Sum_probs=46.6
Q ss_pred ccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 027439 129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM 183 (223)
Q Consensus 129 Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l 183 (223)
|...++++.++..+++.+..+|.+-..|..+-..++ +.|+...|+..|++.-..
T Consensus 163 ~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~-~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 163 LIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYL-VNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HcCCchHHHHHHHHHHHH
Confidence 344578999999999999999999999988886777 589999999999988774
No 336
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=75.93 E-value=4.7 Score=35.07 Aligned_cols=47 Identities=30% Similarity=0.350 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027439 136 NSTDLYYQKMIQ-----ADPRNPL---LLSNYARFLKEARGDLLKAEEYCARAIL 182 (223)
Q Consensus 136 ~eA~~~y~~aLe-----ldP~n~~---~l~nlA~~l~~~~gdyeeA~~~~ekAL~ 182 (223)
++|..+|++|++ +.|.++. +..|++.|+|+..++.++|.++.++|+.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 567777777775 3566653 3456776777777888888777776654
No 337
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=75.64 E-value=5.8 Score=24.17 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027439 135 NNSTDLYYQKMIQADPRNPLLLSNYA 160 (223)
Q Consensus 135 ~~eA~~~y~~aLeldP~n~~~l~nlA 160 (223)
++.|..+|++.+...|. +..|..+|
T Consensus 3 ~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred HHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 45555555555555443 44444444
No 338
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=75.42 E-value=7 Score=28.31 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=15.1
Q ss_pred HHHhCCHHHHHHHHH-------HHHHhCCCCHHH
Q 027439 164 KEARGDLLKAEEYCA-------RAILMSPNDGNV 190 (223)
Q Consensus 164 ~~~~gdyeeA~~~~e-------kAL~ldP~d~~~ 190 (223)
++..|++++|+.+|+ +++...||++.-
T Consensus 16 ~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k 49 (75)
T cd02682 16 AEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTR 49 (75)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHH
Confidence 344555555555555 555567876653
No 339
>PLN03138 Protein TOC75; Provisional
Probab=75.41 E-value=5.1 Score=41.02 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhCCCC
Q 027439 138 TDLYYQKMIQADPRN 152 (223)
Q Consensus 138 A~~~y~~aLeldP~n 152 (223)
.++.+.+++.+.|..
T Consensus 166 ~e~~l~~~i~~kpG~ 180 (796)
T PLN03138 166 TEDSFFEMVTLRPGG 180 (796)
T ss_pred hHHHHHHHHhcCCCC
Confidence 555566666666654
No 340
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.12 E-value=30 Score=31.59 Aligned_cols=69 Identities=17% Similarity=0.060 Sum_probs=50.5
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027439 145 MIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSP--NDGNVLSMYGDLIWQSHKDASRAESYFDQA 215 (223)
Q Consensus 145 aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP--~d~~~l~~lA~ll~~~~G~~eeAi~~fekA 215 (223)
.+..||+|..+...+|..+. ..|+++.|.+.+-..++.|- +|..+...+-.++.. .|.-+.+...|++=
T Consensus 228 ~~aadPdd~~aa~~lA~~~~-~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~-~g~~Dp~~~~~RRk 298 (304)
T COG3118 228 RLAADPDDVEAALALADQLH-LVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEA-FGPADPLVLAYRRK 298 (304)
T ss_pred HHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh-cCCCCHHHHHHHHH
Confidence 34468999999999997666 47999999999999988764 456677777766555 66444455555543
No 341
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=75.11 E-value=5.9 Score=24.86 Aligned_cols=30 Identities=13% Similarity=0.078 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 027439 154 LLLSNYARFLKEARGDLLKAEEYCARAILMS 184 (223)
Q Consensus 154 ~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld 184 (223)
.++..+|.+-.. ..+|++|+.-|++++++.
T Consensus 2 dv~~~Lgeisle-~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLE-NENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHH-hccHHHHHHHHHHHHHHH
Confidence 466778866664 799999999999999864
No 342
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.71 E-value=14 Score=30.44 Aligned_cols=51 Identities=24% Similarity=0.310 Sum_probs=42.5
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 027439 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN 186 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~ 186 (223)
..+..++..++.++..|+ +.++.+++.++. .+|+.++|....+++..+.|.
T Consensus 126 ~l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~-~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRPD-PNVYQRYALALA-LLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCc
Confidence 456677778888888885 777889996666 589999999999999999994
No 343
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.60 E-value=30 Score=33.89 Aligned_cols=82 Identities=18% Similarity=0.301 Sum_probs=58.6
Q ss_pred CChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHH
Q 027439 133 HGNNSTDLYYQKMIQADPRN---PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND----------GNVLSMYGDLIW 199 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n---~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d----------~~~l~~lA~ll~ 199 (223)
+.|+.|+..|..++++-..- +.+-.|+| +.|.+.++ ++.+|+-.-.+.|.| ..+++.+|-+.+
T Consensus 381 ~~~enAe~hf~~a~k~t~~~dl~a~~nlnlA-i~YL~~~~---~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf 456 (629)
T KOG2300|consen 381 NCYENAEFHFIEATKLTESIDLQAFCNLNLA-ISYLRIGD---AEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAF 456 (629)
T ss_pred chHHHHHHHHHHHHHhhhHHHHHHHHHHhHH-HHHHHhcc---HHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 58999999999999875432 34455677 44545444 445555555566663 456777887777
Q ss_pred HHcCCHHHHHHHHHHHHHhC
Q 027439 200 QSHKDASRAESYFDQAVKAA 219 (223)
Q Consensus 200 ~~~G~~eeAi~~fekAL~l~ 219 (223)
. ++++.||...+.+.++..
T Consensus 457 ~-qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 457 K-QNDLNEAKRFLRETLKMA 475 (629)
T ss_pred H-hccHHHHHHHHHHHHhhc
Confidence 7 999999999999998874
No 344
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.19 E-value=14 Score=32.60 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=30.9
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439 167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD 221 (223)
Q Consensus 167 ~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd 221 (223)
.+..++|+...+.-++.+|.|......|-.++.. .|++++|...++-+-++.|+
T Consensus 14 ~~sL~dai~~a~~qVkakPtda~~RhflfqLlcv-aGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 14 DNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCV-AGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred hccHHHHHHHHHHHHhcCCccccchhHHHHHHhh-cchHHHHHHHHHHHhhcCcc
Confidence 3555566666666666666665555555555444 56666666555555555554
No 345
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=74.09 E-value=39 Score=29.77 Aligned_cols=48 Identities=15% Similarity=0.057 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHH-----hCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027439 170 LLKAEEYCARAIL-----MSPNDGNVL---SMYGDLIWQSHKDASRAESYFDQAVK 217 (223)
Q Consensus 170 yeeA~~~~ekAL~-----ldP~d~~~l---~~lA~ll~~~~G~~eeAi~~fekAL~ 217 (223)
.++|.+.|++|++ +.|.+|--+ .+++.++|...++.++|...-++|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678889998876 458887543 45566788888999999877777654
No 346
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=73.76 E-value=14 Score=36.50 Aligned_cols=85 Identities=15% Similarity=-0.006 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH-HHHH
Q 027439 136 NSTDLYYQKMIQADPRNPLLLSNY--ARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA-ESYF 212 (223)
Q Consensus 136 ~eA~~~y~~aLeldP~n~~~l~nl--A~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA-i~~f 212 (223)
.-++..+..-+.++|.++.++... . .+..-.++...|.-....++..+|++..+..+++.++-. .+....+ ....
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~ls-i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~-~~~~~~~~~~~~ 125 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLS-ILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALEL-DGLQFLALADIS 125 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHH-hhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHH-hhhHHHHHHHHH
Confidence 446667777778899998875443 3 333345777889999999999999999999999988766 5544444 4444
Q ss_pred HHHHHhCCCC
Q 027439 213 DQAVKAAPDD 222 (223)
Q Consensus 213 ekAL~l~Pdn 222 (223)
+.++...|+|
T Consensus 126 ~~a~~~~~~~ 135 (620)
T COG3914 126 EIAEWLSPDN 135 (620)
T ss_pred HHHHhcCcch
Confidence 4477777765
No 347
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=73.38 E-value=7.8 Score=25.05 Aligned_cols=32 Identities=38% Similarity=0.518 Sum_probs=22.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439 176 YCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208 (223)
Q Consensus 176 ~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA 208 (223)
.+.+||..+|++...+..||+.+.. +|+..+|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e-~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDE-HGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHH-cCCHHHH
Confidence 4566777777777777777776666 7776554
No 348
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=73.20 E-value=14 Score=32.52 Aligned_cols=52 Identities=21% Similarity=0.226 Sum_probs=39.5
Q ss_pred HhCCHHHHHHHHHHHHHhC-CCCHHH-------HHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Q 027439 166 ARGDLLKAEEYCARAILMS-PNDGNV-------LSMYGDLIWQSHK-DASRAESYFDQAVKA 218 (223)
Q Consensus 166 ~~gdyeeA~~~~ekAL~ld-P~d~~~-------l~~lA~ll~~~~G-~~eeAi~~fekAL~l 218 (223)
+++|++.|..++.|+-.+. ..++.. +++.|.-++. .+ +++.|..++++|+++
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~-~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS-KKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHH
Confidence 4799999999999997655 444444 4444444566 77 999999999999876
No 349
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=72.41 E-value=32 Score=35.68 Aligned_cols=86 Identities=16% Similarity=0.183 Sum_probs=59.9
Q ss_pred CCChHHHHHHHHHHHHhCCC--CH------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHH
Q 027439 132 NHGNNSTDLYYQKMIQADPR--NP------LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG-----NVLSMYGDLI 198 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~--n~------~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~-----~~l~~lA~ll 198 (223)
.+++++|..+..++-..-+. .. ..+..+........+++++|+++++.++..=|.+. .++...+.+.
T Consensus 428 ~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~ 507 (894)
T COG2909 428 QHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAA 507 (894)
T ss_pred ccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHH
Confidence 46889999988887765443 11 11222222233346899999999999999887754 3455566555
Q ss_pred HHHcCCHHHHHHHHHHHHHh
Q 027439 199 WQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 199 ~~~~G~~eeAi~~fekAL~l 218 (223)
.. .|++++|..+.+++.+.
T Consensus 508 ~~-~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 508 HI-RGELTQALALMQQAEQM 526 (894)
T ss_pred HH-hchHHHHHHHHHHHHHH
Confidence 55 89999999999998876
No 350
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=71.59 E-value=7.8 Score=28.03 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 027439 157 SNYARFLKEARGDLLKAEEYCARAILM 183 (223)
Q Consensus 157 ~nlA~~l~~~~gdyeeA~~~~ekAL~l 183 (223)
...| +-.+..|+|++|+.+|..+++.
T Consensus 10 a~~A-ve~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 10 ARLA-VQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHH-HHHHHccCHHHHHHHHHHHHHH
Confidence 3444 3445689999999999999885
No 351
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=70.81 E-value=9.4 Score=23.24 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 027439 169 DLLKAEEYCARAILMSPNDGNVLSMYGD 196 (223)
Q Consensus 169 dyeeA~~~~ekAL~ldP~d~~~l~~lA~ 196 (223)
.++.|..+|++.+...| ++..|..+|.
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 57889999999999887 4777777774
No 352
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=70.72 E-value=16 Score=29.41 Aligned_cols=59 Identities=14% Similarity=0.107 Sum_probs=41.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027439 140 LYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200 (223)
Q Consensus 140 ~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~ 200 (223)
+.-++.+++--. .......|...+. .++|.-|.+++..++..+|+|..+....+.++-.
T Consensus 58 ~~A~~~v~l~GG-~d~vl~~A~~~~~-~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~ 116 (141)
T PF14863_consen 58 EEAKRYVELAGG-ADKVLERAQAALA-AGDYQWAAELLDHLVFADPDNEEARQLKADALEQ 116 (141)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHH-CT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 334444555433 4444566666664 7999999999999999999999999999988655
No 353
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=70.65 E-value=8.8 Score=29.92 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 027439 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS 184 (223)
Q Consensus 136 ~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld 184 (223)
-.++++|.++..+.|+.+..++.+|.-+-- ..-|++++.-+++++.+.
T Consensus 61 l~sve~~s~a~~Lsp~~A~~L~~la~~l~s-~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 61 LGSVECFSRAVELSPDSAHSLFELASQLGS-VKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHhHHHHHHHhccChhHHHHHHHHHHHhhh-HHHHHHHHHHHHHHhccc
Confidence 358999999999999999999999965543 467999999999998764
No 354
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=70.20 E-value=55 Score=28.64 Aligned_cols=20 Identities=10% Similarity=0.079 Sum_probs=17.7
Q ss_pred cCCHHHHHHHHHHHHHhCCC
Q 027439 202 HKDASRAESYFDQAVKAAPD 221 (223)
Q Consensus 202 ~G~~eeAi~~fekAL~l~Pd 221 (223)
.++...|+.++++|++++|+
T Consensus 191 ~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 191 AETLQLALALLQRAFQLNDK 210 (230)
T ss_pred cccHHHHHHHHHHHHHhCCC
Confidence 45788999999999999985
No 355
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=70.05 E-value=50 Score=28.58 Aligned_cols=81 Identities=14% Similarity=-0.075 Sum_probs=54.3
Q ss_pred ChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHH
Q 027439 134 GNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAILMSPND------GNVLSMYGDLIWQS 201 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP~n------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d------~~~l~~lA~ll~~~ 201 (223)
.-...++++.+|++..... ..+...+|..++ ..|++++|+++|+++....-.. ..++..+..+.+.
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~-~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~- 230 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYF-RLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKR- 230 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH-
Confidence 3456778888888754322 344567887777 5899999999999997765433 3344445544555
Q ss_pred cCCHHHHHHHHHHHH
Q 027439 202 HKDASRAESYFDQAV 216 (223)
Q Consensus 202 ~G~~eeAi~~fekAL 216 (223)
.|+.+..+.+.-+++
T Consensus 231 ~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 231 LGDVEDYLTTSLELL 245 (247)
T ss_pred hCCHHHHHHHHHHHh
Confidence 888888777665544
No 356
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=69.91 E-value=30 Score=32.57 Aligned_cols=84 Identities=10% Similarity=-0.002 Sum_probs=56.8
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---------------------CC--H-
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSP---------------------ND--G- 188 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP---------------------~d--~- 188 (223)
.+..+-++....++++||.-+.++.-+|.- ..-...+|+.++++|++.-. .| .
T Consensus 198 Rnp~~RI~~A~~ALeIN~eCA~AyvLLAEE---Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl 274 (556)
T KOG3807|consen 198 RNPPARIKAAYQALEINNECATAYVLLAEE---EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVL 274 (556)
T ss_pred cCcHHHHHHHHHHHhcCchhhhHHHhhhhh---hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchh
Confidence 355677888899999999999988777731 12356778888888776421 11 1
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 027439 189 -NVLSMYGDLIWQSHKDASRAESYFDQAVKAAP 220 (223)
Q Consensus 189 -~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~P 220 (223)
.+-..+|.+..+ +|+..+|++.|+...+..|
T Consensus 275 ~YIKRRLAMCARk-lGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 275 VYIKRRLAMCARK-LGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hHHHHHHHHHHHH-hhhHHHHHHHHHHHhhhcc
Confidence 122355644444 9999999999987765443
No 357
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=69.74 E-value=50 Score=25.73 Aligned_cols=73 Identities=7% Similarity=0.059 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCC
Q 027439 136 NSTDLYYQKMIQADPRN---------PLLLSNYARFLKEARGDLLKAEEYCARAIL--MSPNDGNVLSMYGDLIWQSHKD 204 (223)
Q Consensus 136 ~eA~~~y~~aLeldP~n---------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~--ldP~d~~~l~~lA~ll~~~~G~ 204 (223)
..-...++++++.-.++ ..+|..+|. -...+.+.|..+.. +.-..+..+..+|.++-. .++
T Consensus 43 ~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~-------~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~-~~~ 114 (126)
T PF08311_consen 43 SGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD-------LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEK-RGN 114 (126)
T ss_dssp HHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT-------TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHH-TT-
T ss_pred hHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH-------HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHH-cCC
Confidence 44556666666653332 334444442 22267777776655 456678888889976666 999
Q ss_pred HHHHHHHHHHHH
Q 027439 205 ASRAESYFDQAV 216 (223)
Q Consensus 205 ~eeAi~~fekAL 216 (223)
+++|.+.|++++
T Consensus 115 ~~~A~~I~~~Gi 126 (126)
T PF08311_consen 115 FKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC
Confidence 999999999875
No 358
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.20 E-value=63 Score=32.26 Aligned_cols=89 Identities=11% Similarity=0.105 Sum_probs=59.7
Q ss_pred CCChHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----------------
Q 027439 132 NHGNNSTDLYYQKMIQA------------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL----------------- 182 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLel------------dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~----------------- 182 (223)
+..|++|...|.-+++. .|.+...+.++|.++. .+||.+-|..+.+|+|=
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r-~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFR-FQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHH-HhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 35688888888777764 4667888999996555 58998777777766653
Q ss_pred ----hCCCCHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHhCCC
Q 027439 183 ----MSPNDGNVLSMYGDL--IWQSHKDASRAESYFDQAVKAAPD 221 (223)
Q Consensus 183 ----ldP~d~~~l~~lA~l--l~~~~G~~eeAi~~fekAL~l~Pd 221 (223)
+.|.|-..+..+-.. -..+.|-+..|.++++-.+.++|.
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~ 374 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPS 374 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc
Confidence 123333222211111 122378899999999999999886
No 359
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=69.02 E-value=10 Score=38.87 Aligned_cols=89 Identities=19% Similarity=0.198 Sum_probs=59.1
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHH------HHHH
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSP-----NDGNVLSMYGDL------IWQS 201 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP-----~d~~~l~~lA~l------l~~~ 201 (223)
+..+.|++.|+++++..|..... .|+|..+...-..|+...++-+-++.++. ..-.-+..|-++ -..
T Consensus 301 ~s~~~a~~WyrkaFeveP~~~sG-IN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVL- 378 (1226)
T KOG4279|consen 301 ESLNHAIEWYRKAFEVEPLEYSG-INLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVL- 378 (1226)
T ss_pred hhHHHHHHHHHHHhccCchhhcc-ccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhh-
Confidence 46688999999999999985544 47774444433456666666665555542 112222222222 233
Q ss_pred cCCHHHHHHHHHHHHHhCCCCC
Q 027439 202 HKDASRAESYFDQAVKAAPDDW 223 (223)
Q Consensus 202 ~G~~eeAi~~fekAL~l~Pdn~ 223 (223)
..+|.+|+.+-++.+++.|-.|
T Consensus 379 And~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 379 ANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred ccCHHHHHHHHHHHhccCCcee
Confidence 6899999999999999999887
No 360
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=68.53 E-value=13 Score=26.81 Aligned_cols=43 Identities=7% Similarity=0.101 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 027439 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND 187 (223)
Q Consensus 136 ~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d 187 (223)
..|+.+..+|++.|-. .++. ....-|.+|+++|.+++...||.
T Consensus 4 ~~a~~l~~~Ave~D~~-----g~y~----eAl~~Y~~aie~l~~~lk~e~d~ 46 (77)
T cd02683 4 LAAKEVLKRAVELDQE-----GRFQ----EALVCYQEGIDLLMQVLKGTKDE 46 (77)
T ss_pred HHHHHHHHHHHHHHHh-----ccHH----HHHHHHHHHHHHHHHHHhhCCCH
Confidence 4566666666554322 1111 11223455555555556666643
No 361
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=68.42 E-value=26 Score=34.14 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=25.3
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027439 167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAV 216 (223)
Q Consensus 167 ~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL 216 (223)
.+++.-|-..|+-.+...|+++..-..+-..+.. .++-..|.+.|++++
T Consensus 445 ~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~-inde~naraLFetsv 493 (660)
T COG5107 445 TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR-INDEENARALFETSV 493 (660)
T ss_pred cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCcHHHHHHHHHHhH
Confidence 4555555555555555555555444444433333 455555555555444
No 362
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=68.39 E-value=21 Score=35.40 Aligned_cols=77 Identities=12% Similarity=0.118 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027439 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFD 213 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fe 213 (223)
..+++.+..+.-+.-....+.....-|.++.+ -+..++|-++|++.+..+|+ +.+.-+|.-++. .|-..+|...++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~ 98 (578)
T PRK15490 23 KLAQAVALIDSELPTEALTSLAMLKKAEFLHD-VNETERAYALYETLIAQNND--EARYEYARRLYN-TGLAKDAQLILK 98 (578)
T ss_pred hHHHHHHHHHHhCCccchhHHHHHHHhhhhhh-hhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHh-hhhhhHHHHHHH
Confidence 34444444444333333344445555555554 46778888888888888877 455566666666 676777766665
Q ss_pred H
Q 027439 214 Q 214 (223)
Q Consensus 214 k 214 (223)
+
T Consensus 99 ~ 99 (578)
T PRK15490 99 K 99 (578)
T ss_pred H
Confidence 3
No 363
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=68.38 E-value=24 Score=33.00 Aligned_cols=86 Identities=17% Similarity=0.106 Sum_probs=59.3
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM--SPNDGNVLSMYGDLIWQSHKDASRAES 210 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l--dP~d~~~l~~lA~ll~~~~G~~eeAi~ 210 (223)
-||..-..+|+-...+.|.-... .|.+-.+.. ..-.+.++...+.+... =..+...+...++++-+ .|+.++|..
T Consensus 310 tDW~~I~aLYdaL~~~apSPvV~-LNRAVAla~-~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~r-Lgr~~eAr~ 386 (415)
T COG4941 310 TDWPAIDALYDALEQAAPSPVVT-LNRAVALAM-REGPAAGLAMVEALLARPRLDGYHLYHAARADLLAR-LGRVEEARA 386 (415)
T ss_pred CChHHHHHHHHHHHHhCCCCeEe-ehHHHHHHH-hhhHHhHHHHHHHhhcccccccccccHHHHHHHHHH-hCChHHHHH
Confidence 47777788888888888875544 466645554 34456666666666553 12234456667777666 999999999
Q ss_pred HHHHHHHhCCC
Q 027439 211 YFDQAVKAAPD 221 (223)
Q Consensus 211 ~fekAL~l~Pd 221 (223)
.|++|+.+.++
T Consensus 387 aydrAi~La~~ 397 (415)
T COG4941 387 AYDRAIALARN 397 (415)
T ss_pred HHHHHHHhcCC
Confidence 99999998765
No 364
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=67.41 E-value=7.4 Score=36.25 Aligned_cols=67 Identities=12% Similarity=0.083 Sum_probs=53.0
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~ 200 (223)
+++..|+.....+++.++....++..++..+. ...++++|++.++.+....|++..+...+..+-..
T Consensus 289 ~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~-~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 289 KGRGGARFRTNEALRDERSKTKAHYRRGQAYK-LLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred cCCCcceeccccccccChhhCcHHHHHHhHHH-hhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 44555566666667788888888888986666 47899999999999999999999888777765443
No 365
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=67.20 E-value=23 Score=33.90 Aligned_cols=72 Identities=21% Similarity=0.201 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 150 PRNPLLLSNYARFLKEARGDLLKAEEYCARAIL--MSPND--GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 150 P~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~--ldP~d--~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
.....++.|+-.-.|...+-|+.|..+..++.- ...++ +..++.+|.+... +.+|..|.++|.+|+...|++
T Consensus 205 ~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkai-qldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 205 EEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAI-QLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHh-hcchhHHHHHHHHHHHhCcch
Confidence 333444444443444457889999998888762 22222 3445566655555 899999999999999999864
No 366
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=66.78 E-value=14 Score=26.80 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=6.1
Q ss_pred CChHHHHHHHHHHHH
Q 027439 133 HGNNSTDLYYQKMIQ 147 (223)
Q Consensus 133 gd~~eA~~~y~~aLe 147 (223)
|++.+|+.+|+++++
T Consensus 20 gr~~eAi~~Y~~aIe 34 (75)
T cd02682 20 GNAEDAITNYKKAIE 34 (75)
T ss_pred CCHHHHHHHHHHHHH
Confidence 344444444444433
No 367
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=66.27 E-value=55 Score=32.03 Aligned_cols=87 Identities=10% Similarity=0.029 Sum_probs=66.6
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHH
Q 027439 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPND--GNVLSMYGDLIWQSHKDASRAE 209 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d--~~~l~~lA~ll~~~~G~~eeAi 209 (223)
.+|+.-|-..|+-.+...|+.+.....+-.++. +.++-..|..+|+++++.-.++ ..++..+-..-.. -|+...++
T Consensus 445 ~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi-~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~-~G~lN~v~ 522 (660)
T COG5107 445 TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI-RINDEENARALFETSVERLEKTQLKRIYDKMIEYESM-VGSLNNVY 522 (660)
T ss_pred cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH-HhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHh-hcchHHHH
Confidence 478999999999999999999998888887777 5899999999999888754444 4556555544444 78887777
Q ss_pred HHHHHHHHhCC
Q 027439 210 SYFDQAVKAAP 220 (223)
Q Consensus 210 ~~fekAL~l~P 220 (223)
..=++...+.|
T Consensus 523 sLe~rf~e~~p 533 (660)
T COG5107 523 SLEERFRELVP 533 (660)
T ss_pred hHHHHHHHHcC
Confidence 66666655555
No 368
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.79 E-value=22 Score=35.84 Aligned_cols=65 Identities=9% Similarity=0.107 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 027439 155 LLSNYARFLKEARGDLLKAEEYCARAILMSPNDG------NVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 155 ~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~------~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn 222 (223)
.|+. |.-.+. .++|..++++|...+..-|.|. .....++ ++|..+.+.++|.++++.|-+.+|.+
T Consensus 357 LWn~-A~~~F~-~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~-~CYL~L~QLD~A~E~~~EAE~~d~~~ 427 (872)
T KOG4814|consen 357 LWNT-AKKLFK-MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQ-VCYLKLEQLDNAVEVYQEAEEVDRQS 427 (872)
T ss_pred HHHh-hHHHHH-HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHhhcccc
Confidence 3433 335563 5899999999999999877653 3455566 35555899999999999999998865
No 369
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=65.35 E-value=7.4 Score=38.11 Aligned_cols=87 Identities=11% Similarity=0.098 Sum_probs=55.1
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHH---HH---------------------------
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARA---IL--------------------------- 182 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekA---L~--------------------------- 182 (223)
||.-.|-.....+++-.|.++....-.+ .++..+|+|+.|...+.-+ +.
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~-~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRS-VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHH-HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHH
Confidence 5888888889999999888887766666 4444578887776654322 11
Q ss_pred ----hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439 183 ----MSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD 221 (223)
Q Consensus 183 ----ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd 221 (223)
-.-.+++++...|...-. ++-+++|..++++++.++|.
T Consensus 382 ~~l~~eie~~ei~~iaa~sa~~-l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 382 MMLSNEIEDEEVLTVAAGSADA-LQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHhccccCChhheeeecccHHH-HhHHHHHHHHHHHHhccCCh
Confidence 112233333222222223 66778888888888888764
No 370
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=65.10 E-value=63 Score=26.55 Aligned_cols=79 Identities=9% Similarity=0.024 Sum_probs=47.4
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYF 212 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~f 212 (223)
++...-+.+|-. .+-.+-.+ .+|.-....+++-++-.+.+......+..+|..+..+|.+|-+ .|+..+|-+.+
T Consensus 70 ~NlKrVi~C~~~---~n~~se~v--D~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~k-lg~~r~~~ell 143 (161)
T PF09205_consen 70 GNLKRVIECYAK---RNKLSEYV--DLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKK-LGNTREANELL 143 (161)
T ss_dssp S-THHHHHHHHH---TT---HHH--HHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cchHHHHHHHHH---hcchHHHH--HHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH-hcchhhHHHHH
Confidence 355666677633 33333333 4443334356788888888888887666789999999977666 99999999999
Q ss_pred HHHHH
Q 027439 213 DQAVK 217 (223)
Q Consensus 213 ekAL~ 217 (223)
.+|-+
T Consensus 144 ~~ACe 148 (161)
T PF09205_consen 144 KEACE 148 (161)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98854
No 371
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.06 E-value=34 Score=29.33 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=30.6
Q ss_pred hCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027439 167 RGDLLKAEEYCARA-ILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVK 217 (223)
Q Consensus 167 ~gdyeeA~~~~ekA-L~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~ 217 (223)
.+.|++-..-.+.. ...+|--..+.-.++...|+ .|++.+|...|++...
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~k-agd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYK-AGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHh-ccchHHHHHHHHHHHc
Confidence 45555544444332 22233334455556666788 8999999999998764
No 372
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=64.94 E-value=11 Score=36.01 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027439 185 PNDGNVLSMYGDLIWQSHKDASRAESYFDQA 215 (223)
Q Consensus 185 P~d~~~l~~lA~ll~~~~G~~eeAi~~fekA 215 (223)
-+++..|..+|++... +|+++-|+..|+++
T Consensus 344 ~~~~~~W~~Lg~~AL~-~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALR-QGNIELAEECYQKA 373 (443)
T ss_dssp CSTHHHHHHHHHHHHH-TTBHHHHHHHHHHC
T ss_pred cCcHHHHHHHHHHHHH-cCCHHHHHHHHHhh
Confidence 4688999999999888 99999999999986
No 373
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=63.43 E-value=15 Score=25.71 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=15.8
Q ss_pred HHHhCCHHHHHHHHHHHHHh
Q 027439 164 KEARGDLLKAEEYCARAILM 183 (223)
Q Consensus 164 ~~~~gdyeeA~~~~ekAL~l 183 (223)
.+..+++++|+.+|.++++.
T Consensus 18 ~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 18 ADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 34579999999998888774
No 374
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=63.23 E-value=31 Score=26.97 Aligned_cols=44 Identities=23% Similarity=0.409 Sum_probs=35.0
Q ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 027439 137 STDLYYQKMIQ--ADPRNPLLLSNYARFLKEARGDLLKAEEYCARAI 181 (223)
Q Consensus 137 eA~~~y~~aLe--ldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL 181 (223)
.+.+.|+.+.. +.-..+.+|..+|.++- ..+++++|.+.|+++|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le-~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLE-KRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHH-HcCCHHHHHHHHHhhC
Confidence 67778887775 45677999999995555 6899999999999886
No 375
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=63.20 E-value=10 Score=34.76 Aligned_cols=55 Identities=16% Similarity=0.014 Sum_probs=43.6
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARA 180 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekA 180 (223)
-+++|...+.+.+|+++.++++.++|-+...+.-+-..+. ..||--.|..+|++.
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la-~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLA-TLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHH-HhccchhhhhHHHHH
Confidence 3455666799999999999999999999988877775555 478877777777654
No 376
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=62.84 E-value=32 Score=29.83 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHH-----hCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439 171 LKAEEYCARAIL-----MSPNDGNV---LSMYGDLIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 171 eeA~~~~ekAL~-----ldP~d~~~---l~~lA~ll~~~~G~~eeAi~~fekAL~l 218 (223)
++|...|++|++ +.|.+|.. ..+++.++|...++.++|+...++|+..
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 677778888766 46888754 3456766888899999999988888754
No 377
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=62.51 E-value=25 Score=30.92 Aligned_cols=64 Identities=14% Similarity=0.200 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 027439 150 PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS------PNDGNVLSMYGDLIWQSHKDASRAESYFDQ 214 (223)
Q Consensus 150 P~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld------P~d~~~l~~lA~ll~~~~G~~eeAi~~fek 214 (223)
+.+.....++...+......-..-..+..+|++.. -.|+..|..+|..+++ .+++.+|+.+|-.
T Consensus 46 ~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~-e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 46 PVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWK-EGNYYEAERHFLL 115 (260)
T ss_dssp --SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHH-TT-HHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHh-hccHHHHHHHHHh
Confidence 33444445555444431122223444555555543 2478899999988888 8999999888743
No 378
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=62.41 E-value=64 Score=29.45 Aligned_cols=46 Identities=20% Similarity=0.103 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027439 169 DLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQA 215 (223)
Q Consensus 169 dyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekA 215 (223)
..-+|+.+++.++..+|.|......+..+|.. .|-...|...|++.
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~-LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSL-LGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHhc
Confidence 45789999999999999999999988877777 99999999999764
No 379
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=61.25 E-value=23 Score=31.16 Aligned_cols=48 Identities=21% Similarity=0.260 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027439 135 NNSTDLYYQKMIQ-----ADPRNPL---LLSNYARFLKEARGDLLKAEEYCARAIL 182 (223)
Q Consensus 135 ~~eA~~~y~~aLe-----ldP~n~~---~l~nlA~~l~~~~gdyeeA~~~~ekAL~ 182 (223)
.++|.++|++|++ +.|.||. +..|++.|+|+..++.++|..+.++|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4688999999986 4577764 3567788899888999998877776655
No 380
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=61.01 E-value=14 Score=26.57 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.6
Q ss_pred HHhCCHHHHHHHHHHHHHh
Q 027439 165 EARGDLLKAEEYCARAILM 183 (223)
Q Consensus 165 ~~~gdyeeA~~~~ekAL~l 183 (223)
...++|++|..+|..+|..
T Consensus 17 d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 17 EEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 3568999999999988874
No 381
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=60.98 E-value=73 Score=24.38 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=31.7
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 027439 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCA 178 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~e 178 (223)
.+.......+++..+..++.++.+++.+.. ++. .-+..+.+++++
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~li~-ly~-~~~~~~ll~~l~ 64 (140)
T smart00299 20 RNLLEELIPYLESALKLNSENPALQTKLIE-LYA-KYDPQKEIERLD 64 (140)
T ss_pred CCcHHHHHHHHHHHHccCccchhHHHHHHH-HHH-HHCHHHHHHHHH
Confidence 357889999999999998888888877774 443 234445555544
No 382
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=60.96 E-value=1.3e+02 Score=28.05 Aligned_cols=51 Identities=12% Similarity=0.064 Sum_probs=33.3
Q ss_pred CCChHHHHHHHHHHHHhCCCCHH--HHHHHHHHHH-HHhCCHHHHHHHHHHHHH
Q 027439 132 NHGNNSTDLYYQKMIQADPRNPL--LLSNYARFLK-EARGDLLKAEEYCARAIL 182 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~n~~--~l~nlA~~l~-~~~gdyeeA~~~~ekAL~ 182 (223)
.++|..|...++.+.+.-|.+.. .+..++..+. .-.-+|.+|.+++++.+.
T Consensus 144 ~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 144 RYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred cCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 48899999999998875344333 3444433222 124688888888886664
No 383
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=60.80 E-value=1.2e+02 Score=26.72 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHHHhCCHHHHHHHHH----------------HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 027439 151 RNPLLLSNYARFLKEARGDLLKAEEYCA----------------RAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQ 214 (223)
Q Consensus 151 ~n~~~l~nlA~~l~~~~gdyeeA~~~~e----------------kAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fek 214 (223)
.++..+..+|..++ +.++|.+|+.+|- -..+-+|...+.+...|.+.+...++...|...++.
T Consensus 88 Gdp~LH~~~a~~~~-~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~ 166 (260)
T PF04190_consen 88 GDPELHHLLAEKLW-KEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDT 166 (260)
T ss_dssp --HHHHHHHHHHHH-HTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-hhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 46788888887766 4788888777663 112346778888888888888878999999887766
Q ss_pred HHHh
Q 027439 215 AVKA 218 (223)
Q Consensus 215 AL~l 218 (223)
-++.
T Consensus 167 f~~~ 170 (260)
T PF04190_consen 167 FTSK 170 (260)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 384
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=60.73 E-value=59 Score=31.67 Aligned_cols=82 Identities=10% Similarity=0.082 Sum_probs=61.9
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCHHH-----HH-HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 027439 130 PNNHGNNSTDLYYQKMIQADPRNPLL-----LS-NYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHK 203 (223)
Q Consensus 130 ~~~gd~~eA~~~y~~aLeldP~n~~~-----l~-nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G 203 (223)
.+.+++.+|++.|-+.++.-.+++.. +. .+-++++ +.+.+.-+.+.-..-+..|+.+.+..-.|.+.|+ .+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff--l~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~-~k 93 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF--LNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYK-QK 93 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH--HhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-hh
Confidence 45679999999999999876666433 22 2333333 5788888888777778889889888888877888 99
Q ss_pred CHHHHHHHHHH
Q 027439 204 DASRAESYFDQ 214 (223)
Q Consensus 204 ~~eeAi~~fek 214 (223)
.+.+|++.+-.
T Consensus 94 ~~~kal~~ls~ 104 (549)
T PF07079_consen 94 EYRKALQALSV 104 (549)
T ss_pred hHHHHHHHHHH
Confidence 99999887754
No 385
>PF12854 PPR_1: PPR repeat
Probab=60.65 E-value=25 Score=20.84 Aligned_cols=26 Identities=15% Similarity=0.019 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 027439 188 GNVLSMYGDLIWQSHKDASRAESYFDQ 214 (223)
Q Consensus 188 ~~~l~~lA~ll~~~~G~~eeAi~~fek 214 (223)
...+..+-..+.+ .|+.++|++.|++
T Consensus 7 ~~ty~~lI~~~Ck-~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCK-AGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHH-CCCHHHHHHHHHh
Confidence 3344444444555 6666666666654
No 386
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=60.22 E-value=17 Score=35.94 Aligned_cols=55 Identities=16% Similarity=0.012 Sum_probs=47.7
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG 188 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~ 188 (223)
++.-.|+.-+..++++||....+++.|+.++.+ ++++.+|+.+...+.-..|.|.
T Consensus 425 ~d~~~AlrDch~Alrln~s~~kah~~la~aL~e-l~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 425 GDSYLALRDCHVALRLNPSIQKAHFRLARALNE-LTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred ccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH-HhhHHHhhhhHHHHhhcCchhh
Confidence 355678888889999999999999999999996 8999999999988888888544
No 387
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=60.16 E-value=90 Score=26.87 Aligned_cols=51 Identities=6% Similarity=-0.026 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 027439 169 DLLKAEEYCARAIL-MSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPD 221 (223)
Q Consensus 169 dyeeA~~~~ekAL~-ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pd 221 (223)
.-++|...|-++=. -.=+++...+.+| .+|. ..+.++|+.+|.++|++.+.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~-krD~~Kt~~ll~~~L~l~~~ 172 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALA-TYYT-KRDPEKTIQLLLRALELSNP 172 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHH-HHHH-ccCHHHHHHHHHHHHHhcCC
Confidence 33555555544432 2236788888888 4565 79999999999999998543
No 388
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=59.19 E-value=26 Score=24.74 Aligned_cols=13 Identities=15% Similarity=0.089 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHh
Q 027439 136 NSTDLYYQKMIQA 148 (223)
Q Consensus 136 ~eA~~~y~~aLel 148 (223)
++|+.++++|++.
T Consensus 4 ~~A~~l~~~Av~~ 16 (75)
T cd02678 4 QKAIELVKKAIEE 16 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666665443
No 389
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=58.80 E-value=22 Score=22.94 Aligned_cols=23 Identities=39% Similarity=0.401 Sum_probs=10.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Q 027439 158 NYARFLKEARGDLLKAEEYCARAI 181 (223)
Q Consensus 158 nlA~~l~~~~gdyeeA~~~~ekAL 181 (223)
++|..|.. .|+++.|.+.++..+
T Consensus 4 dLA~ayie-~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIE-MGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHH-cCChHHHHHHHHHHH
Confidence 34444442 455555555554444
No 390
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=58.65 E-value=24 Score=25.74 Aligned_cols=17 Identities=18% Similarity=0.089 Sum_probs=11.9
Q ss_pred hCCHHHHHHHHHHHHHh
Q 027439 167 RGDLLKAEEYCARAILM 183 (223)
Q Consensus 167 ~gdyeeA~~~~ekAL~l 183 (223)
.|+.++|+.+|++++..
T Consensus 21 ~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 21 WGDKEQALAHYRKGLRE 37 (79)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 47777777777777663
No 391
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=58.57 E-value=71 Score=31.41 Aligned_cols=87 Identities=18% Similarity=0.042 Sum_probs=54.8
Q ss_pred CCCChHHHHHHHHHHHHhCCC--CHHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHH-HH
Q 027439 131 NNHGNNSTDLYYQKMIQADPR--NPLL----LSNYARFLKEARGDLLKAEEYCARAILMSPN----DGNVLSMYGDL-IW 199 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLeldP~--n~~~----l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~----d~~~l~~lA~l-l~ 199 (223)
...+++.|+.++++++.+... ..+. -.-++.+++. .+...|...++++|+..-+ .....+.+-.+ +.
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~--~~~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~ 149 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK--TNPKAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLA 149 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 346899999999999887643 3322 2233444442 3444499999999987655 22222233222 22
Q ss_pred HHcCCHHHHHHHHHHHHHhC
Q 027439 200 QSHKDASRAESYFDQAVKAA 219 (223)
Q Consensus 200 ~~~G~~eeAi~~fekAL~l~ 219 (223)
...+++..|++.++......
T Consensus 150 ~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 150 LQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred HhcccHHHHHHHHHHHHHHh
Confidence 21369999999999988764
No 392
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=58.31 E-value=65 Score=31.95 Aligned_cols=82 Identities=17% Similarity=0.202 Sum_probs=64.3
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 027439 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESY 211 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~ 211 (223)
+..+.-.+-++.++++...+ ..++..++.+|.+ ...++-...++|.++.+=+|...-.-++. ++. ..+.++|..+
T Consensus 79 n~k~~~veh~c~~~l~~~e~-kmal~el~q~y~e--n~n~~l~~lWer~ve~dfnDvv~~ReLa~-~yE-kik~sk~a~~ 153 (711)
T COG1747 79 NHKNQIVEHLCTRVLEYGES-KMALLELLQCYKE--NGNEQLYSLWERLVEYDFNDVVIGRELAD-KYE-KIKKSKAAEF 153 (711)
T ss_pred chHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHh--cCchhhHHHHHHHHHhcchhHHHHHHHHH-HHH-HhchhhHHHH
Confidence 34556667778888887655 4455678867764 47788888999999999999988888884 567 5999999999
Q ss_pred HHHHHHh
Q 027439 212 FDQAVKA 218 (223)
Q Consensus 212 fekAL~l 218 (223)
|.||+..
T Consensus 154 f~Ka~yr 160 (711)
T COG1747 154 FGKALYR 160 (711)
T ss_pred HHHHHHH
Confidence 9999865
No 393
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=58.03 E-value=28 Score=23.90 Aligned_cols=18 Identities=28% Similarity=0.291 Sum_probs=10.9
Q ss_pred HHhCCHHHHHHHHHHHHH
Q 027439 165 EARGDLLKAEEYCARAIL 182 (223)
Q Consensus 165 ~~~gdyeeA~~~~ekAL~ 182 (223)
+..|++++|+.+|.+++.
T Consensus 16 D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 16 DEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHTTSHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 345666666666666554
No 394
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=57.87 E-value=24 Score=25.46 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 027439 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN 186 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~ 186 (223)
+.++|+.+.++|+..|-. .++-. ...=|..|+++|.. +.+|.
T Consensus 2 ~l~kai~Lv~~A~~eD~~-----gny~e----A~~lY~~ale~~~~--ekn~~ 43 (75)
T cd02680 2 DLERAHFLVTQAFDEDEK-----GNAEE----AIELYTEAVELCIN--TSNET 43 (75)
T ss_pred CHHHHHHHHHHHHHhhHh-----hhHHH----HHHHHHHHHHHHHH--hcChh
Confidence 456777777777666533 12221 12234566776666 33554
No 395
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=57.46 E-value=19 Score=20.66 Aligned_cols=13 Identities=31% Similarity=0.606 Sum_probs=6.4
Q ss_pred CHHHHHHHHHHHH
Q 027439 204 DASRAESYFDQAV 216 (223)
Q Consensus 204 ~~eeAi~~fekAL 216 (223)
+.++|+.+|++|.
T Consensus 20 d~~~A~~~~~~Aa 32 (36)
T smart00671 20 DLEKALEYYKKAA 32 (36)
T ss_pred CHHHHHHHHHHHH
Confidence 4445555555444
No 396
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=57.26 E-value=41 Score=27.08 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=35.8
Q ss_pred hCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027439 167 RGDLLKAEEYCARAILMSPN------------DGNVLSMYGDLIWQSHKDASRAESYFDQAVK 217 (223)
Q Consensus 167 ~gdyeeA~~~~ekAL~ldP~------------d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~ 217 (223)
.+.|++|..-|.+|++..-. |...+..++.++.. +|+|++++.--+++|.
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~-Lgry~e~L~sA~~aL~ 83 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG-LGRYDECLQSADRALR 83 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHH
Confidence 48899999999999987522 23445566666777 9999988777777664
No 397
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=55.96 E-value=35 Score=25.07 Aligned_cols=55 Identities=7% Similarity=-0.016 Sum_probs=38.8
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHHhCCHHHHHHHHHHHH
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARF---LKEARGDLLKAEEYCARAI 181 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~---l~~~~gdyeeA~~~~ekAL 181 (223)
|-++|.++ +.++|+...+++++..++...-+..+|.. +.+ -|+|.+++++.-+=+
T Consensus 13 GlkLY~~~-~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e-~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 13 GLKLYHQN-ETQQALQKWRKALEKITDREDRFRVLGYLIQAHME-WGKYREMLAFALQQL 70 (80)
T ss_pred HHHHhccc-hHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 44567554 77999999999999998888766666632 332 478887777644433
No 398
>PF13041 PPR_2: PPR repeat family
Probab=55.59 E-value=34 Score=21.55 Aligned_cols=24 Identities=13% Similarity=-0.034 Sum_probs=12.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439 194 YGDLIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 194 lA~ll~~~~G~~eeAi~~fekAL~l 218 (223)
+-..+.+ .|++++|.+.|++..+.
T Consensus 9 li~~~~~-~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 9 LISGYCK-AGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHH-CcCHHHHHHHHHHHHHc
Confidence 3333444 56666666666655543
No 399
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=54.74 E-value=59 Score=30.42 Aligned_cols=80 Identities=19% Similarity=0.173 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHH--HHHHHHhCCCC--HHH-HHHHHHHHHHHcCCHHHHHH
Q 027439 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEY--CARAILMSPND--GNV-LSMYGDLIWQSHKDASRAES 210 (223)
Q Consensus 136 ~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~--~ekAL~ldP~d--~~~-l~~lA~ll~~~~G~~eeAi~ 210 (223)
..-.+++++-....|+...+++.+|.+.|+ .|+|..|..+ +-+++.-+|+- ..+ |..+|.-++ .-+++-|++
T Consensus 112 ~~~l~~L~e~ynf~~e~i~~lykyakfqye-CGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL--~qnWd~A~e 188 (432)
T KOG2758|consen 112 VQNLQHLQEHYNFTPERIETLYKYAKFQYE-CGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEIL--TQNWDGALE 188 (432)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHH--HhhHHHHHH
Confidence 345666777777889999999999999996 9999998884 44555544432 222 333342233 467888988
Q ss_pred HHHHHHHh
Q 027439 211 YFDQAVKA 218 (223)
Q Consensus 211 ~fekAL~l 218 (223)
.+.|.-+.
T Consensus 189 dL~rLre~ 196 (432)
T KOG2758|consen 189 DLTRLREY 196 (432)
T ss_pred HHHHHHHH
Confidence 88887543
No 400
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=54.65 E-value=1.6e+02 Score=30.56 Aligned_cols=83 Identities=13% Similarity=0.138 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHHcCCHHHHHHH
Q 027439 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL--IWQSHKDASRAESY 211 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l--l~~~~G~~eeAi~~ 211 (223)
+-++-+.-+++-+.+++.+...+..|-..+. ..+++++-...-+++.++.|..+.+|..+..- .....++..++...
T Consensus 94 ~~~~ei~t~~ee~ai~~y~~~~~v~Li~llr-k~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 94 GGNQEIRTLEEELAINSYKYAQMVQLIGLLR-KLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred cchhHHHHHHHHhcccccchHHHHHHHHHHH-HhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 4456667777777888888887777775555 57898888888888888888888888777644 22224566788888
Q ss_pred HHHHHH
Q 027439 212 FDQAVK 217 (223)
Q Consensus 212 fekAL~ 217 (223)
|++|+.
T Consensus 173 ~ekal~ 178 (881)
T KOG0128|consen 173 FEKALG 178 (881)
T ss_pred HHHHhc
Confidence 888874
No 401
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=54.02 E-value=34 Score=22.11 Aligned_cols=34 Identities=32% Similarity=0.374 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHH
Q 027439 140 LYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAE 174 (223)
Q Consensus 140 ~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~ 174 (223)
..|.++|..+|++...+..||.++-. .|+...|+
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~e-~gdp~rae 36 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLDE-HGDPARAE 36 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHH-cCCHHHHh
Confidence 46788999999999999999988885 78886654
No 402
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=52.14 E-value=75 Score=33.40 Aligned_cols=86 Identities=13% Similarity=0.110 Sum_probs=53.7
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHH
Q 027439 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS----HKDASRAE 209 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~----~G~~eeAi 209 (223)
++++|+..|++. .-.|.-+.-|..-| ..|+++++|++-+++|..|++..|+.|.+-...--++++. ..+...|.
T Consensus 534 ~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (932)
T PRK13184 534 DFTQALSEFSYL-HGGVGAPLEYLGKA-LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREAL 611 (932)
T ss_pred HHHHHHHHHHHh-cCCCCCchHHHhHH-HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666552 33444455455555 3466899999999999999999999987654444443331 11233455
Q ss_pred HHHHHHHHhCCC
Q 027439 210 SYFDQAVKAAPD 221 (223)
Q Consensus 210 ~~fekAL~l~Pd 221 (223)
...--++...|.
T Consensus 612 ~~~~~~~~~~~~ 623 (932)
T PRK13184 612 VFMLLALWIAPE 623 (932)
T ss_pred HHHHHHHHhCcc
Confidence 555556666664
No 403
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=51.71 E-value=66 Score=31.16 Aligned_cols=75 Identities=15% Similarity=-0.033 Sum_probs=55.3
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Q 027439 125 WGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM---SPNDGNVLSMYGDLIWQ 200 (223)
Q Consensus 125 gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l---dP~d~~~l~~lA~ll~~ 200 (223)
-..+|...++.+-|+..-.+.|-++|.+..-+..-| +++..+.+|.+|.+-+.-|.-+ +..+..-...+-.+||.
T Consensus 234 lv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqA-avfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyWq 311 (569)
T PF15015_consen 234 LVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQA-AVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQ 311 (569)
T ss_pred HHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHH
Confidence 345777889999999999999999999998888888 5555789999998877666443 33333444445555554
No 404
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=51.43 E-value=36 Score=24.56 Aligned_cols=40 Identities=13% Similarity=0.066 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 027439 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS 184 (223)
Q Consensus 136 ~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld 184 (223)
..|+++.++|++.|-. .++..+ ...|.+|+++|..++...
T Consensus 4 ~~Ai~~a~~Ave~D~~-----g~y~eA----~~~Y~~aie~l~~~~~~~ 43 (76)
T cd02681 4 RDAVQFARLAVQRDQE-----GRYSEA----VFYYKEAAQLLIYAEMAG 43 (76)
T ss_pred HHHHHHHHHHHHHHHc-----cCHHHH----HHHHHHHHHHHHHHHHhc
Confidence 4688888888887654 122221 234667888888886655
No 405
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=50.73 E-value=35 Score=23.43 Aligned_cols=43 Identities=28% Similarity=0.265 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 027439 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN 186 (223)
Q Consensus 135 ~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~ 186 (223)
++.|..+.++|++.|-.. ++. ....-|.+|++++.+++...++
T Consensus 2 ~~~A~~~~~~Av~~D~~g-----~~~----~A~~~Y~~ai~~l~~~~~~~~~ 44 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAG-----NYE----EALELYKEAIEYLMQALKSESN 44 (69)
T ss_dssp HHHHHHHHHHHHHHHHTT-----SHH----HHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHCC-----CHH----HHHHHHHHHHHHHHHHhccCCC
Confidence 367888888888886642 333 2234688999999999998763
No 406
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=49.60 E-value=94 Score=22.19 Aligned_cols=69 Identities=7% Similarity=0.021 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 027439 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQ 214 (223)
Q Consensus 135 ~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fek 214 (223)
..+|+.++.+|++.+-. .++. ....-|..|+++|..++...++ +..... +--+...-.++|...+..
T Consensus 3 l~~A~~l~~~Ave~d~~-----~~y~----eA~~~Y~~~i~~~~~~~k~e~~-~~~k~~---ir~K~~eYl~RAE~i~~~ 69 (75)
T cd02677 3 LEQAAELIRLALEKEEE-----GDYE----AAFEFYRAGVDLLLKGVQGDSS-PERREA---VKRKIAEYLKRAEEILRL 69 (75)
T ss_pred HHHHHHHHHHHHHHHHH-----hhHH----HHHHHHHHHHHHHHHHhccCCC-HHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 46788888888887654 2222 2345678899999999987764 322211 112212335566666555
Q ss_pred HH
Q 027439 215 AV 216 (223)
Q Consensus 215 AL 216 (223)
-+
T Consensus 70 ~l 71 (75)
T cd02677 70 HL 71 (75)
T ss_pred hc
Confidence 44
No 407
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=48.49 E-value=31 Score=18.84 Aligned_cols=15 Identities=20% Similarity=0.140 Sum_probs=7.6
Q ss_pred cCCHHHHHHHHHHHH
Q 027439 202 HKDASRAESYFDQAV 216 (223)
Q Consensus 202 ~G~~eeAi~~fekAL 216 (223)
.|++++|.+.|++..
T Consensus 13 ~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 13 MGQFEEALEVFDEMR 27 (31)
T ss_pred cchHHHHHHHHHHHh
Confidence 455555555555443
No 408
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=48.23 E-value=40 Score=21.73 Aligned_cols=24 Identities=8% Similarity=0.131 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 027439 193 MYGDLIWQSHKDASRAESYFDQAVK 217 (223)
Q Consensus 193 ~lA~ll~~~~G~~eeAi~~fekAL~ 217 (223)
.+|.+|.. .|+++.|+..++.++.
T Consensus 4 dLA~ayie-~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 4 DLARAYIE-MGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHH-cCChHHHHHHHHHHHH
Confidence 45666666 7777777777777764
No 409
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=47.86 E-value=57 Score=28.28 Aligned_cols=83 Identities=19% Similarity=0.215 Sum_probs=53.1
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----C--
Q 027439 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEA----RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSH----K-- 203 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~----~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~----G-- 203 (223)
+|++|.+.|+.--.. ...+...+.||.++..- .++...|++.+..|.. -+++.+-..++.++|... +
T Consensus 50 nF~~A~kv~K~nCde-n~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dp 126 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCDE-NSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADP 126 (248)
T ss_pred HHHHHHHHHHhcccc-cCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCC
Confidence 455555555443332 23466667888444321 1468999999999988 566778777886655421 1
Q ss_pred CHHHHHHHHHHHHHhC
Q 027439 204 DASRAESYFDQAVKAA 219 (223)
Q Consensus 204 ~~eeAi~~fekAL~l~ 219 (223)
+.++|++++.++-.++
T Consensus 127 d~~Ka~~y~traCdl~ 142 (248)
T KOG4014|consen 127 DSEKAERYMTRACDLE 142 (248)
T ss_pred CcHHHHHHHHHhccCC
Confidence 3679999999986553
No 410
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=47.82 E-value=42 Score=23.41 Aligned_cols=17 Identities=18% Similarity=0.216 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhCCC
Q 027439 170 LLKAEEYCARAILMSPN 186 (223)
Q Consensus 170 yeeA~~~~ekAL~ldP~ 186 (223)
|..|++.|.+++...|+
T Consensus 29 Y~~a~e~l~~~~~~~~~ 45 (75)
T cd02656 29 YKEALDYLLQALKAEKE 45 (75)
T ss_pred HHHHHHHHHHHhccCCC
Confidence 44555555555555553
No 411
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=47.79 E-value=52 Score=23.45 Aligned_cols=14 Identities=0% Similarity=-0.092 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHh
Q 027439 135 NNSTDLYYQKMIQA 148 (223)
Q Consensus 135 ~~eA~~~y~~aLel 148 (223)
.++|+.+.++|++.
T Consensus 3 l~~Ai~lv~~Av~~ 16 (75)
T cd02684 3 LEKAIALVVQAVKK 16 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666666444
No 412
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=47.38 E-value=1.3e+02 Score=29.87 Aligned_cols=48 Identities=13% Similarity=0.107 Sum_probs=40.2
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027439 167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQA 215 (223)
Q Consensus 167 ~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekA 215 (223)
.||.-.|-+.+..++...|.+|......+.+.-. +|+|+.|...+.-+
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~-lg~ye~~~~~~s~~ 349 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSH-LGYYEQAYQDISDV 349 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHH-hhhHHHHHHHhhch
Confidence 5899999999999999999999988888866555 99999998776543
No 413
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=46.93 E-value=98 Score=25.43 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=35.7
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 027439 133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILM 183 (223)
Q Consensus 133 gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~l 183 (223)
+.-++-.+.++..++-+..++.++..+|.+|. +.|+..+|.+++.+|.+.
T Consensus 100 ~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~-klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 100 GKKDQLDKIYNELKKNEEINPEFLVKIANAYK-KLGNTREANELLKEACEK 149 (161)
T ss_dssp T-HHHHHHHHHHH-----S-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHhhccCCCHHHHHHHHHHHH-HhcchhhHHHHHHHHHHh
Confidence 45677788888888766778999999997777 699999999999999874
No 414
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=46.46 E-value=1.3e+02 Score=31.18 Aligned_cols=86 Identities=14% Similarity=0.100 Sum_probs=63.4
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH------cC
Q 027439 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEAR--GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS------HK 203 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~--gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~------~G 203 (223)
++++++-...=.++.++.|.++.+|..+......+. .+-.+++.+|++|+. |-+++.+|.-++..++.. .+
T Consensus 126 ~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~-dy~~v~iw~e~~~y~~~~~~~~~~~~ 204 (881)
T KOG0128|consen 126 LGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG-DYNSVPIWEEVVNYLVGFGNVAKKSE 204 (881)
T ss_pred hcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc-ccccchHHHHHHHHHHhccccccccc
Confidence 377777777777888899999999988875543322 467888889999998 566777777777654331 45
Q ss_pred CHHHHHHHHHHHHHh
Q 027439 204 DASRAESYFDQAVKA 218 (223)
Q Consensus 204 ~~eeAi~~fekAL~l 218 (223)
+++.-+..|.+|+..
T Consensus 205 d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 205 DYKKERSVFERALRS 219 (881)
T ss_pred cchhhhHHHHHHHhh
Confidence 777888888888754
No 415
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.21 E-value=64 Score=32.54 Aligned_cols=45 Identities=20% Similarity=0.123 Sum_probs=32.3
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027439 167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVK 217 (223)
Q Consensus 167 ~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~ 217 (223)
.++++.|..+.. ..++..-|..+|++... .+++..|.+.|.+|-.
T Consensus 650 lgrl~iA~~la~-----e~~s~~Kw~~Lg~~al~-~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 650 LGRLDIAFDLAV-----EANSEVKWRQLGDAALS-AGELPLASECFLRARD 694 (794)
T ss_pred cCcHHHHHHHHH-----hhcchHHHHHHHHHHhh-cccchhHHHHHHhhcc
Confidence 455555544332 34567778889988777 8999999999998753
No 416
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=44.51 E-value=97 Score=29.60 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027439 149 DPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL 182 (223)
Q Consensus 149 dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ 182 (223)
.-+++..|..+|.... .+|+++-|+++|+++-.
T Consensus 343 ~~~~~~~W~~Lg~~AL-~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 343 ELDDPEKWKQLGDEAL-RQGNIELAEECYQKAKD 375 (443)
T ss_dssp CCSTHHHHHHHHHHHH-HTTBHHHHHHHHHHCT-
T ss_pred hcCcHHHHHHHHHHHH-HcCCHHHHHHHHHhhcC
Confidence 3457889999996655 68999999999997643
No 417
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.48 E-value=67 Score=31.60 Aligned_cols=82 Identities=20% Similarity=0.137 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHHcCCHHHHHHHHH
Q 027439 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV--LSMYGDLIWQSHKDASRAESYFD 213 (223)
Q Consensus 136 ~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~--l~~lA~ll~~~~G~~eeAi~~fe 213 (223)
+...+.+....+..|+++....+.|..+. ..|+.+.|+.+++..+...-..... ++-.++++.- +.++.+|..++.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~-~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~-~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILS-IKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVG-QHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHH-HcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHH
Confidence 66666777777889999999999997776 4788888888999888822222222 2234444444 677888888888
Q ss_pred HHHHhC
Q 027439 214 QAVKAA 219 (223)
Q Consensus 214 kAL~l~ 219 (223)
.....+
T Consensus 328 ~L~des 333 (546)
T KOG3783|consen 328 LLRDES 333 (546)
T ss_pred HHHhhh
Confidence 876543
No 418
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=42.89 E-value=90 Score=28.45 Aligned_cols=46 Identities=15% Similarity=-0.025 Sum_probs=39.7
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 027439 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARA 180 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekA 180 (223)
..-+|+.+++.++..+|.|..+...+.+.|. ..|-.+.|...|...
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~-~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYS-LLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHhc
Confidence 5678999999999999999999988885555 689999999998754
No 419
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=42.84 E-value=30 Score=35.31 Aligned_cols=95 Identities=18% Similarity=0.097 Sum_probs=67.4
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQADPR----NPLLLSNYARFLKE-ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS 201 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLeldP~----n~~~l~nlA~~l~~-~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~ 201 (223)
+...+..++..|--.|..++.+-|. .+....+.+.++.+ ..++|.+++.-|+-|+...|....++...+..|..
T Consensus 61 n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~a- 139 (748)
T KOG4151|consen 61 NKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEA- 139 (748)
T ss_pred hHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHH-
Confidence 3344456777777777777777773 34455566634332 23799999999999999999999998887755555
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q 027439 202 HKDASRAESYFDQAVKAAPDD 222 (223)
Q Consensus 202 ~G~~eeAi~~fekAL~l~Pdn 222 (223)
.+.++-|++...-.....|.+
T Consensus 140 l~k~d~a~rdl~i~~~~~p~~ 160 (748)
T KOG4151|consen 140 LNKLDLAVRDLRIVEKMDPSN 160 (748)
T ss_pred HHHHHHHHHHHHHHhcCCCCc
Confidence 666788888866666667776
No 420
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=42.82 E-value=58 Score=23.37 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 027439 156 LSNYARFLKEARGDLLKAEEYCARAILM 183 (223)
Q Consensus 156 l~nlA~~l~~~~gdyeeA~~~~ekAL~l 183 (223)
+...| +-.+..|+|++|+.+|.++|..
T Consensus 9 l~~~A-ve~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 9 VLKRA-VELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHH-HHHHHhccHHHHHHHHHHHHHH
Confidence 34445 3444567888888888887774
No 421
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=42.65 E-value=59 Score=17.85 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=9.7
Q ss_pred cCCHHHHHHHHHHHHH
Q 027439 202 HKDASRAESYFDQAVK 217 (223)
Q Consensus 202 ~G~~eeAi~~fekAL~ 217 (223)
.|++++|.+.|++..+
T Consensus 13 ~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 13 AGRVEEALELFKEMLE 28 (35)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5666666666666544
No 422
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=42.63 E-value=21 Score=37.46 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=6.1
Q ss_pred Cchhhhhhhhccc
Q 027439 35 CDSLKSMTRTLSE 47 (223)
Q Consensus 35 ~~~~~~~~~~~~~ 47 (223)
...+-+|.|-+|.
T Consensus 1126 narllnmiRdIs~ 1138 (1282)
T KOG0921|consen 1126 NARLLNMIRDISR 1138 (1282)
T ss_pred hHHHHHHHHHhcc
Confidence 3344455555543
No 423
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=42.09 E-value=39 Score=36.39 Aligned_cols=81 Identities=17% Similarity=0.138 Sum_probs=62.6
Q ss_pred HHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHcCCHH
Q 027439 136 NSTDLYYQKMI-QADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--------PNDGNVLSMYGDLIWQSHKDAS 206 (223)
Q Consensus 136 ~eA~~~y~~aL-eldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld--------P~d~~~l~~lA~ll~~~~G~~e 206 (223)
.+++.++.+.+ .+.|.....+..++..++ +.+++++|+.+.++|.-+. |+....+..++...+. .++..
T Consensus 955 ~~slnl~~~v~~~~h~~~~~~~~~La~l~~-~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~-~~~~~ 1032 (1236)
T KOG1839|consen 955 PESLNLLNNVMGVLHPEVASKYRSLAKLSN-RLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFA-VKNLS 1032 (1236)
T ss_pred hhhhhHHHHhhhhcchhHHHHHHHHHHHHh-hhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHh-ccCcc
Confidence 45566777555 568999999999996666 6899999999999887653 5566677777755666 77888
Q ss_pred HHHHHHHHHHHh
Q 027439 207 RAESYFDQAVKA 218 (223)
Q Consensus 207 eAi~~fekAL~l 218 (223)
.|...+.++.++
T Consensus 1033 ~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1033 GALKSLNRALKL 1044 (1236)
T ss_pred chhhhHHHHHHh
Confidence 899888888765
No 424
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=41.32 E-value=8.8 Score=37.79 Aligned_cols=12 Identities=33% Similarity=0.409 Sum_probs=2.5
Q ss_pred CccccCcCCCCC
Q 027439 8 TPILNSWIPHAK 19 (223)
Q Consensus 8 ~~~~~~~~~~~~ 19 (223)
+||.-||.+..+
T Consensus 455 ~~itlSWk~~~~ 466 (556)
T PF05918_consen 455 KNITLSWKEAKK 466 (556)
T ss_dssp -----TTS----
T ss_pred cccceeeeeccc
Confidence 467778875444
No 425
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=41.21 E-value=1.7e+02 Score=29.15 Aligned_cols=80 Identities=15% Similarity=0.089 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhCCCCHHHHH-HHHHHHHHHcCCHHHHHHHH
Q 027439 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAI-LMSPNDGNVLS-MYGDLIWQSHKDASRAESYF 212 (223)
Q Consensus 135 ~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL-~ldP~d~~~l~-~lA~ll~~~~G~~eeAi~~f 212 (223)
...+..|++++-+..++...-|.-+|.....+.++.++|..++.+.- .++|..-.-.. ..+.+... +.++..|..++
T Consensus 44 ~a~s~~yl~qa~qs~~~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q~~~~~LL~ael~la-~~q~~~Al~~L 122 (604)
T COG3107 44 NASSQFYLQQAQQSSGEQQNDWLLLAARALVEEGKTAQAQALLNQLPQELTDAQRAEKSLLAAELALA-QKQPAAALQQL 122 (604)
T ss_pred chhHHHHHHHHhhcCchhhhhHHHHHHHHHHHcCChHHHHHHHHhccccCCHHHHHHHHHHHHHHHHh-ccChHHHHHHH
Confidence 35677788888888888777777777666667899999999998876 55554432233 34444444 78888888888
Q ss_pred HHH
Q 027439 213 DQA 215 (223)
Q Consensus 213 ekA 215 (223)
.+.
T Consensus 123 ~~~ 125 (604)
T COG3107 123 AKL 125 (604)
T ss_pred hhc
Confidence 765
No 426
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=39.81 E-value=1.3e+02 Score=34.66 Aligned_cols=81 Identities=17% Similarity=0.170 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHHh---CC----CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 027439 135 NNSTDLYYQKMIQA---DP----RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (223)
Q Consensus 135 ~~eA~~~y~~aLel---dP----~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee 207 (223)
..+-+-.+++++-. +| .-...|.++|++.. ..|+++.|..+.-.|.+..+ +.+..-.|..+|. .|+...
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR-~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~-~gd~~~ 1720 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIAR-LAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQ-TGDELN 1720 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHH-hcccHHHHHHHHHhhhhccc--chHHHHHHHHHHh-hccHHH
Confidence 34445555665532 32 23678999997776 47999999999999999874 6777789999999 999999
Q ss_pred HHHHHHHHHHhC
Q 027439 208 AESYFDQAVKAA 219 (223)
Q Consensus 208 Ai~~fekAL~l~ 219 (223)
|+..+++.+..+
T Consensus 1721 Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1721 ALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHhh
Confidence 999999999653
No 427
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=39.38 E-value=2.4e+02 Score=26.17 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=41.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh-CCCCH-HHHHHHHH--HHHHHcCCHHHHHHHHHHHHHh
Q 027439 158 NYARFLKEARGDLLKAEEYCARAILM-SPNDG-NVLSMYGD--LIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 158 nlA~~l~~~~gdyeeA~~~~ekAL~l-dP~d~-~~l~~lA~--ll~~~~G~~eeAi~~fekAL~l 218 (223)
..+..++ ...+|..|.+.++.++.. .++.. ..+..++. .+|. .-+|++|.+++++.+..
T Consensus 136 ~~a~~l~-n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD-~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELF-NRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWD-RFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHH
Confidence 4444455 479999999999999985 44332 23333332 2688 88999999999988764
No 428
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=39.17 E-value=58 Score=30.89 Aligned_cols=49 Identities=8% Similarity=-0.090 Sum_probs=29.8
Q ss_pred CCChHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027439 132 NHGNNSTDLYYQKMIQAD---------PRNPLLLSNYARFLKEARGDLLKAEEYCARAIL 182 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeld---------P~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ 182 (223)
.|||..|++.++. ++++ +-+..+++.+| +.|.++++|.+|++.|...+.
T Consensus 135 LGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvG-FaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 135 LGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVG-FAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred ccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4777777777654 2222 22344555666 555567777777777777665
No 429
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.58 E-value=1.6e+02 Score=27.50 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=50.6
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHhCCHHHHHHHHHHH--HHhCCCCHHHHHHH-
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPR--------NPLLLSNYARFLKEARGDLLKAEEYCARA--ILMSPNDGNVLSMY- 194 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~--------n~~~l~nlA~~l~~~~gdyeeA~~~~ekA--L~ldP~d~~~l~~l- 194 (223)
+..|++.++|..|...+. ++.++.. ....+..+|+.|. ..++..+|+.+..|+ +..+..|......+
T Consensus 110 AsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyL-e~~d~veae~~inRaSil~a~~~Ne~Lqie~k 187 (399)
T KOG1497|consen 110 ASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYL-EDDDKVEAEAYINRASILQAESSNEQLQIEYK 187 (399)
T ss_pred HHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHhhhcccCHHHHHHHH
Confidence 456777788877766553 2333321 1345667776555 478889999888887 33344565554443
Q ss_pred ---HHHHHHHcCCHHHHHHHHHHHH
Q 027439 195 ---GDLIWQSHKDASRAESYFDQAV 216 (223)
Q Consensus 195 ---A~ll~~~~G~~eeAi~~fekAL 216 (223)
|.++-. .++|-+|...|-+..
T Consensus 188 vc~ARvlD~-krkFlEAAqrYyels 211 (399)
T KOG1497|consen 188 VCYARVLDY-KRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 333333 556666555554543
No 430
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=38.42 E-value=26 Score=33.15 Aligned_cols=50 Identities=14% Similarity=0.028 Sum_probs=32.8
Q ss_pred hCCHHHHHHHHHHH-------H-HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027439 167 RGDLLKAEEYCARA-------I-LMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVK 217 (223)
Q Consensus 167 ~gdyeeA~~~~ekA-------L-~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~ 217 (223)
+|||..|++.++-. . ..-+-+..+++..|.++.. .++|.+|++.|...+.
T Consensus 135 LGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylM-lrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 135 LGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLM-LRRYADAIRTFSQILL 192 (404)
T ss_pred ccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 47777777765532 1 1124456677777755555 8999999999888763
No 431
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=38.27 E-value=2.1e+02 Score=25.68 Aligned_cols=61 Identities=11% Similarity=-0.007 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---------------------hCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027439 137 STDLYYQKMIQADPRNPLLLSNYARFLKEA---------------------RGDLLKAEEYCARAILMSPNDGNVLSMYG 195 (223)
Q Consensus 137 eA~~~y~~aLeldP~n~~~l~nlA~~l~~~---------------------~gdyeeA~~~~ekAL~ldP~d~~~l~~lA 195 (223)
.-.+.++.=++..|+...++..+|.++..+ ....++|+.++.+|++++|....+...+-
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 456677777889999988888888665331 11258899999999999999988877666
Q ss_pred HH
Q 027439 196 DL 197 (223)
Q Consensus 196 ~l 197 (223)
.+
T Consensus 141 ~~ 142 (277)
T PF13226_consen 141 NI 142 (277)
T ss_pred HH
Confidence 55
No 432
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.19 E-value=2.3e+02 Score=27.95 Aligned_cols=61 Identities=15% Similarity=0.029 Sum_probs=45.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 027439 158 NYARFLKEARGDLLKAEEYCARAILM---SPN----DGNVLSMYGDLIWQSHKDASRAESYFDQAVKAA 219 (223)
Q Consensus 158 nlA~~l~~~~gdyeeA~~~~ekAL~l---dP~----d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~ 219 (223)
-+| ++...+|+-..|..+|...++. .-+ -|.+++-+|.++|...|-..+|.+++.||-.-.
T Consensus 454 L~g-~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 454 LKG-VILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHH-HHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 345 3344689999999999988832 122 478899999888884444999999999997654
No 433
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=36.68 E-value=1.8e+02 Score=26.61 Aligned_cols=88 Identities=10% Similarity=0.046 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-cCCHHH
Q 027439 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEA-------RGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS-HKDASR 207 (223)
Q Consensus 136 ~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~-------~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~-~G~~ee 207 (223)
..|++.-...+..+|..-.+|+-.=.++..+ .-=.+.-..++..+++-+|.+..+|...-+++-.. ..++.+
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~r 128 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGR 128 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccch
Confidence 5677888888888888777775554444321 11136677889999999999999988777664331 246778
Q ss_pred HHHHHHHHHHhCCCCC
Q 027439 208 AESYFDQAVKAAPDDW 223 (223)
Q Consensus 208 Ai~~fekAL~l~Pdn~ 223 (223)
-....++.+..++.||
T Consensus 129 El~itkklld~DsrNy 144 (328)
T COG5536 129 ELFITKKLLDSDSRNY 144 (328)
T ss_pred hHHHHHHHhccccccc
Confidence 8888899999998886
No 434
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=36.61 E-value=1.1e+02 Score=28.62 Aligned_cols=63 Identities=14% Similarity=0.085 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Q 027439 136 NSTDLYYQKMIQADPR---NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG-NVLSMYGDLIW 199 (223)
Q Consensus 136 ~eA~~~y~~aLeldP~---n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~-~~l~~lA~ll~ 199 (223)
++....+..+|+--|+ .+.+|..+|+.+. +.+.++..+.+|++||.....=. .....+.+++-
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~-~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEP-RTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 6677777777777675 4688999996555 68999999999999999876422 34444555543
No 435
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=36.59 E-value=1.9e+02 Score=28.86 Aligned_cols=65 Identities=22% Similarity=0.226 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439 152 NPLLLSNYARFLKEAR--GDLLKAEEYCARAILM-----SPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 152 n~~~l~nlA~~l~~~~--gdyeeA~~~~ekAL~l-----dP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l 218 (223)
.+.++.+||. |.+.. .+-..++++|.+||.. +..+.-.+..+|..+|+ .++|.+|+.+|-.|-+.
T Consensus 276 YPmALg~Lad-LeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR-~~~~~eA~~~Wa~aa~V 347 (618)
T PF05053_consen 276 YPMALGNLAD-LEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYR-HKRYREALRSWAEAADV 347 (618)
T ss_dssp -HHHHHHHHH-HHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred CchhhhhhHh-HHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHH-HHHHHHHHHHHHHHHHH
Confidence 4666777773 33221 2335567778888764 23344556677777888 99999999999887543
No 436
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=36.22 E-value=54 Score=26.49 Aligned_cols=24 Identities=13% Similarity=0.014 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHH
Q 027439 172 KAEEYCARAILMSPNDGNVLSMYG 195 (223)
Q Consensus 172 eA~~~~ekAL~ldP~d~~~l~~lA 195 (223)
.|..+|+..++..|++-.++..|-
T Consensus 94 ~Ae~vY~el~~~~P~HLpaHla~i 117 (139)
T PF12583_consen 94 NAEQVYEELLEAHPDHLPAHLAMI 117 (139)
T ss_dssp HHHHHHHHHHHH-TT-THHHHHHH
T ss_pred HHHHHHHHHHHHCcchHHHHHHHH
Confidence 456666666677776666655444
No 437
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=35.32 E-value=91 Score=21.88 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 027439 156 LSNYARFLKEARGDLLKAEEYCARAILM 183 (223)
Q Consensus 156 l~nlA~~l~~~~gdyeeA~~~~ekAL~l 183 (223)
+..-| +-....++|++|+.+|.+|++.
T Consensus 9 l~~~A-v~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 9 LVKKA-IEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHH-HHHHHcCCHHHHHHHHHHHHHH
Confidence 34445 3445678888887777777653
No 438
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=35.29 E-value=83 Score=17.45 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=11.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 027439 197 LIWQSHKDASRAESYFDQAVK 217 (223)
Q Consensus 197 ll~~~~G~~eeAi~~fekAL~ 217 (223)
++.+ .|+++.|...|+...+
T Consensus 10 a~~~-~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 10 ACAK-AGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHH-CCCHHHHHHHHHHHHH
Confidence 3444 6666666666666544
No 439
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=35.27 E-value=89 Score=17.82 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=14.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHH
Q 027439 174 EEYCARAILMSPNDGNVLSMYGDL 197 (223)
Q Consensus 174 ~~~~ekAL~ldP~d~~~l~~lA~l 197 (223)
+++..+++..+|.|..+|...-.+
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~l 26 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWL 26 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHH
Confidence 455666666667666666555443
No 440
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=34.77 E-value=1.5e+02 Score=20.42 Aligned_cols=44 Identities=25% Similarity=0.234 Sum_probs=31.2
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 027439 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPN 186 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~ 186 (223)
.+++|..+..+|++.+-.. ++. ....-|.+|++.|.+++...|+
T Consensus 4 ~~~~A~~li~~Av~~d~~g-----~~~----eAl~~Y~~a~e~l~~~~~~~~~ 47 (77)
T smart00745 4 YLSKAKELISKALKADEAG-----DYE----EALELYKKAIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHHHHHHHHHHHcC-----CHH----HHHHHHHHHHHHHHHHhccCCC
Confidence 4678899999998876631 222 1234567899999999998875
No 441
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=34.18 E-value=18 Score=15.28 Aligned_cols=6 Identities=67% Similarity=1.608 Sum_probs=5.0
Q ss_pred ccccCc
Q 027439 9 PILNSW 14 (223)
Q Consensus 9 ~~~~~~ 14 (223)
|-.|||
T Consensus 2 pafnsw 7 (8)
T PF08260_consen 2 PAFNSW 7 (8)
T ss_pred cccccc
Confidence 778898
No 442
>PF13041 PPR_2: PPR repeat family
Probab=34.02 E-value=1.2e+02 Score=18.91 Aligned_cols=31 Identities=6% Similarity=-0.090 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 027439 153 PLLLSNYARFLKEARGDLLKAEEYCARAILMS 184 (223)
Q Consensus 153 ~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld 184 (223)
...|+.+-..+. +.+++++|.++|++..+..
T Consensus 3 ~~~yn~li~~~~-~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 3 VVTYNTLISGYC-KAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred hHHHHHHHHHHH-HCcCHHHHHHHHHHHHHcC
Confidence 445555554455 5789999999999888754
No 443
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=33.61 E-value=2.4e+02 Score=25.40 Aligned_cols=93 Identities=11% Similarity=0.039 Sum_probs=55.7
Q ss_pred CCCChHHHHHHHHHHHHhCCC----CHH-HHHHHHHHHHHHhCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-
Q 027439 131 NNHGNNSTDLYYQKMIQADPR----NPL-LLSNYARFLKEARGDLL---KAEEYCARAILMSPNDGNVLSMYGDLIWQS- 201 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLeldP~----n~~-~l~nlA~~l~~~~gdye---eA~~~~ekAL~ldP~d~~~l~~lA~ll~~~- 201 (223)
..++|++-.+.|++..+...+ ... +.......++......+ ...+.++.=+...|+...++..+|..++..
T Consensus 12 ~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~A 91 (277)
T PF13226_consen 12 QARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYWVHRA 91 (277)
T ss_pred HhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 457899999999888764332 222 11111111221111111 345566666888999999988888763321
Q ss_pred --------------------cCCHHHHHHHHHHHHHhCCCCC
Q 027439 202 --------------------HKDASRAESYFDQAVKAAPDDW 223 (223)
Q Consensus 202 --------------------~G~~eeAi~~fekAL~l~Pdn~ 223 (223)
..-.+.|..++.+|++++|..+
T Consensus 92 w~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~ 133 (277)
T PF13226_consen 92 WDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPV 133 (277)
T ss_pred HHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 1124578889999999998753
No 444
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=33.48 E-value=1e+02 Score=21.34 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=16.1
Q ss_pred HHHhCCHHHHHHHHHHHHHh
Q 027439 164 KEARGDLLKAEEYCARAILM 183 (223)
Q Consensus 164 ~~~~gdyeeA~~~~ekAL~l 183 (223)
.+..++|++|+.+|..|++.
T Consensus 16 ~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 16 EDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 34568999999999999885
No 445
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=33.25 E-value=57 Score=35.18 Aligned_cols=91 Identities=18% Similarity=0.131 Sum_probs=61.7
Q ss_pred ccccCCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCH---HH
Q 027439 127 SWDPNNHGNNSTDLYYQKMIQA--------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS-----PNDG---NV 190 (223)
Q Consensus 127 ~~Y~~~gd~~eA~~~y~~aLel--------dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld-----P~d~---~~ 190 (223)
..|...+++++|+...+++.-+ .|+....+.+++.+.+ ..+....|+..+.+|.++. |+.| .+
T Consensus 981 ~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f-~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~ 1059 (1236)
T KOG1839|consen 981 KLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEF-AVKNLSGALKSLNRALKLKLLSSGEDHPPTALS 1059 (1236)
T ss_pred HHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHH-hccCccchhhhHHHHHHhhccccCCCCCchhhh
Confidence 3444567888888887776543 3556778889995555 5678888888888887752 3333 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 027439 191 LSMYGDLIWQSHKDASRAESYFDQAVKAA 219 (223)
Q Consensus 191 l~~lA~ll~~~~G~~eeAi~~fekAL~l~ 219 (223)
-.++. ++....++++.|+.+.+.|+..+
T Consensus 1060 ~~nle-~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1060 FINLE-LLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred hhHHH-HHHhhHHHHHHHHHHHHHHHHHH
Confidence 33444 33333689999999999998754
No 446
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=32.80 E-value=1e+02 Score=17.78 Aligned_cols=13 Identities=23% Similarity=0.135 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q 027439 170 LLKAEEYCARAIL 182 (223)
Q Consensus 170 yeeA~~~~ekAL~ 182 (223)
+++|+++|++|.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 4555555555544
No 447
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=32.58 E-value=2.7e+02 Score=26.11 Aligned_cols=47 Identities=23% Similarity=0.203 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 027439 135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNV 190 (223)
Q Consensus 135 ~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~ 190 (223)
..+|+.+..+|++.|.. .||..++ .-|.-|++||..+|+...++..+
T Consensus 7 l~kaI~lv~kA~~eD~a-----~nY~eA~----~lY~~aleYF~~~lKYE~~~~ka 53 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDNA-----KNYEEAL----RLYQNALEYFLHALKYEANNKKA 53 (439)
T ss_pred HHHHHHHHHHHhhhcch-----hchHHHH----HHHHHHHHHHHHHHHhhhcChhH
Confidence 46788888888776543 1222222 22455677777777665555533
No 448
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=32.54 E-value=2.7e+02 Score=26.24 Aligned_cols=93 Identities=11% Similarity=0.081 Sum_probs=59.5
Q ss_pred cccCCCChHHHHHHHHHHHHhC---CCCHHHHHHHHH--HHHHHhCCHHHHHHH--HHHHHHhCCCCHHHHHHHHHHHHH
Q 027439 128 WDPNNHGNNSTDLYYQKMIQAD---PRNPLLLSNYAR--FLKEARGDLLKAEEY--CARAILMSPNDGNVLSMYGDLIWQ 200 (223)
Q Consensus 128 ~Y~~~gd~~eA~~~y~~aLeld---P~n~~~l~nlA~--~l~~~~gdyeeA~~~--~ekAL~ldP~d~~~l~~lA~ll~~ 200 (223)
++....||..|-.||-+|++-. .++..+...+-+ .+..+.+..++-..+ -.-+++.+..+.+++...|.++..
T Consensus 218 lha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~n 297 (411)
T KOG1463|consen 218 LHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGN 297 (411)
T ss_pred eeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcC
Confidence 3344579999999999999742 222344333332 234455666654444 456677777788888888876433
Q ss_pred -HcCCHHHHHHHHHHHHHhCC
Q 027439 201 -SHKDASRAESYFDQAVKAAP 220 (223)
Q Consensus 201 -~~G~~eeAi~~fekAL~l~P 220 (223)
.+.+|+.|+.-|.+=+..+|
T Consensus 298 RSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 298 RSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred CcHHHHHHHHHHhHHHHhcCh
Confidence 14578888888887766554
No 449
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=32.54 E-value=2e+02 Score=21.10 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=19.1
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027439 167 RGDLLKAEEYCARAILMSPNDGNVLSMYGDL 197 (223)
Q Consensus 167 ~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l 197 (223)
-++..+++.-..++++.+|+||.++-.|-..
T Consensus 20 a~~~~~~l~~Al~~l~~~pdnP~~LA~~Qa~ 50 (80)
T PRK15326 20 VDNLQTQVTEALDKLAAKPSDPALLAAYQSK 50 (80)
T ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 3455555666666667788888766555433
No 450
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=32.37 E-value=90 Score=35.93 Aligned_cols=78 Identities=18% Similarity=0.181 Sum_probs=54.5
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHHcCCHHHHHH
Q 027439 132 NHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL-IWQSHKDASRAES 210 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l-l~~~~G~~eeAi~ 210 (223)
.|+++.|..||++++..+|++...+...-+.++. .+.+...+-+.+-.+...++...-+..++.- .|. +++++.-..
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~-~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~-l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLA-IQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWR-LSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhc-ccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhh-hcchhhhhh
Confidence 4899999999999999999987766655555553 5777777777777766666666666555532 355 666665444
Q ss_pred H
Q 027439 211 Y 211 (223)
Q Consensus 211 ~ 211 (223)
+
T Consensus 1540 ~ 1540 (2382)
T KOG0890|consen 1540 Y 1540 (2382)
T ss_pred h
Confidence 4
No 451
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=32.36 E-value=37 Score=33.86 Aligned_cols=10 Identities=50% Similarity=0.630 Sum_probs=4.3
Q ss_pred CCCCCCCCCC
Q 027439 103 YGGGGNMCGG 112 (223)
Q Consensus 103 ~g~gg~~~g~ 112 (223)
||..++||||
T Consensus 618 ~~~~~~~~~~ 627 (653)
T PTZ00009 618 GGMPGGMPGG 627 (653)
T ss_pred CCCCCCCCCC
Confidence 3444444443
No 452
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.69 E-value=3e+02 Score=27.96 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHH-------------HHHHcCCHHHH
Q 027439 150 PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMS--------PNDGNVLSMYGDL-------------IWQSHKDASRA 208 (223)
Q Consensus 150 P~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ld--------P~d~~~l~~lA~l-------------l~~~~G~~eeA 208 (223)
-++..=|..||.+.. ..+++..|.+++.+|..+. -++.+.+..+|.. ++. .|+++++
T Consensus 663 ~~s~~Kw~~Lg~~al-~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l-~g~~~~C 740 (794)
T KOG0276|consen 663 ANSEVKWRQLGDAAL-SAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFL-SGDYEEC 740 (794)
T ss_pred hcchHHHHHHHHHHh-hcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHH-cCCHHHH
Confidence 345556888886555 4799999999999885532 3445544444432 444 8899988
Q ss_pred HHHHHHH
Q 027439 209 ESYFDQA 215 (223)
Q Consensus 209 i~~fekA 215 (223)
++.+...
T Consensus 741 ~~lLi~t 747 (794)
T KOG0276|consen 741 LELLIST 747 (794)
T ss_pred HHHHHhc
Confidence 8877654
No 453
>PF11266 DUF3066: Protein of unknown function (DUF3066); InterPro: IPR022612 This cyanobacterial family of fatty aldehyde decarbonylases acts on mainly C16 and C18 substrates to form hydrocarbons and carbon monoxide []. Note that the corresponding EC number (4.1.99.5 from EC) dating from 1989 refers to a nonorthologous Pisum sativum enzyme that acts on C18 and longer chains and attaches the overly narrow narrow name octadecanal decarbonylase. ; PDB: 2OC5_A.
Probab=30.46 E-value=1.8e+02 Score=24.89 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027439 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDL 197 (223)
Q Consensus 136 ~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~l 197 (223)
.+|-..|...-++-|++..-+..|++ +..+..++...|.|-+...|+-+.+...++.+
T Consensus 23 qeA~~Nyi~la~llP~~~deL~rLak----ME~rH~kgF~aCGrNL~V~~Dm~fA~~fF~~L 80 (219)
T PF11266_consen 23 QEAHDNYISLAELLPDQKDELIRLAK----MENRHKKGFQACGRNLGVTPDMPFAKEFFSPL 80 (219)
T ss_dssp HHHHHHHHHHHHH-GGGHHHHHHHHH----HHHHHHHHHHHHHHHTT----HHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHCcccHHHHHHHHH----HHHHHHhHHHHhccCCcCCCCcHHHHHHHHHH
Confidence 56777888888899999998888883 45678899999999999999877776656544
No 454
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.15 E-value=3.6e+02 Score=23.19 Aligned_cols=65 Identities=17% Similarity=0.106 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027439 135 NNSTDLYYQKMIQADPRNP-------LLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQ 200 (223)
Q Consensus 135 ~~eA~~~y~~aLeldP~n~-------~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~ 200 (223)
.+.|+..++..-+..|..- .+..--|-+.+...|.|++|.+.+++... +|+.......++.+.-.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHc
Confidence 4677777776555444321 11112222233358999999999999999 89888887777766443
No 455
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=30.06 E-value=22 Score=27.35 Aligned_cols=78 Identities=14% Similarity=0.039 Sum_probs=47.2
Q ss_pred ccCCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 027439 129 DPNNHGNNSTDLYYQKMIQADP-RNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASR 207 (223)
Q Consensus 129 Y~~~gd~~eA~~~y~~aLeldP-~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~ee 207 (223)
+...+....+..+++.++..++ .+..+...+. .++.+.+++++.+++++. .++.++- ..+.++.. .+.+++
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~-~ly~~~~~~~~l~~~L~~-----~~~yd~~-~~~~~c~~-~~l~~~ 88 (143)
T PF00637_consen 17 FEERNQPEELIEYLEALVKENKENNPDLHTLLL-ELYIKYDPYEKLLEFLKT-----SNNYDLD-KALRLCEK-HGLYEE 88 (143)
T ss_dssp CTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHH-HHHHCTTTCCHHHHTTTS-----SSSS-CT-HHHHHHHT-TTSHHH
T ss_pred HHhCCCHHHHHHHHHHHHhcccccCHHHHHHHH-HHHHhcCCchHHHHHccc-----ccccCHH-HHHHHHHh-cchHHH
Confidence 4455678888899999997664 5577877787 555445556777777772 2222222 23334444 667777
Q ss_pred HHHHHHH
Q 027439 208 AESYFDQ 214 (223)
Q Consensus 208 Ai~~fek 214 (223)
|+..|.+
T Consensus 89 a~~Ly~~ 95 (143)
T PF00637_consen 89 AVYLYSK 95 (143)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 7766654
No 456
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.94 E-value=1.7e+02 Score=27.03 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=37.5
Q ss_pred CCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027439 132 NHGNNSTDLYYQKMIQADPRNP----LLLSNYARFLKEARGDLLKAEEYCARAIL 182 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~n~----~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ 182 (223)
..+.++|+.-|++++++.+... .++-++-.+.+ ++++|++-++.|.+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f-~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINF-RLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHh-ccccHHHHHHHHHHHHH
Confidence 3478999999999999998764 34455554445 68888888888877654
No 457
>PRK14983 aldehyde decarbonylase; Provisional
Probab=29.62 E-value=2.6e+02 Score=24.22 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 027439 136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRA 208 (223)
Q Consensus 136 ~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeA 208 (223)
.+|-..|...-++-|++.+-+..|++ +..+..++...|.|-+...|+-+.+...++.+ .++++.|
T Consensus 33 qeA~dNyi~la~llP~~~dEL~rLak----ME~rH~kgF~aCGrNL~V~~Dm~fA~~fF~~L----h~nFq~A 97 (231)
T PRK14983 33 QEAHDNYISLATLLPEHAEELTRLAK----MEMRHKKGFTACGRNLGVTPDMPFAKEFFSPL----HGNFQKA 97 (231)
T ss_pred HHHHHhHHHHHHHCcccHHHHHHHHH----HHHHHHhHHHHHcccCcCCCCcHHHHHHHHHH----HHHHHHH
Confidence 67788888888999999998888883 45788899999999999999988777666644 3345555
No 458
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=29.34 E-value=2.5e+02 Score=21.06 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=19.4
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 027439 166 ARGDLLKAEEYCARAILMSPNDGNVLSMY 194 (223)
Q Consensus 166 ~~gdyeeA~~~~ekAL~ldP~d~~~l~~l 194 (223)
..||+++|++...++-+..+ ++...+.+
T Consensus 71 ~~G~~~~A~k~~~~a~~~~~-~~~l~~L~ 98 (108)
T PF07219_consen 71 AEGDWQRAEKLLAKAAKLSD-NPLLNYLL 98 (108)
T ss_pred HCCCHHHHHHHHHHHHhcCC-CHHHHHHH
Confidence 36899999999999977644 44443333
No 459
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.66 E-value=1.1e+02 Score=32.96 Aligned_cols=60 Identities=20% Similarity=0.098 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 027439 152 NPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKA 218 (223)
Q Consensus 152 n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l 218 (223)
.+.+|..+|.+-. ..+...+|++-|-|| +||..+...-.+.-. .|.|++-+.+++.|-+.
T Consensus 1103 ~p~vWsqlakAQL-~~~~v~dAieSyika-----dDps~y~eVi~~a~~-~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQL-QGGLVKDAIESYIKA-----DDPSNYLEVIDVASR-TGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred ChHHHHHHHHHHH-hcCchHHHHHHHHhc-----CCcHHHHHHHHHHHh-cCcHHHHHHHHHHHHHh
Confidence 3556666665544 356666666666443 445444444444444 66677766666666543
No 460
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=28.65 E-value=3.4e+02 Score=25.47 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=24.8
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-H-----HHHHHHHHHHHHh
Q 027439 166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKD-A-----SRAESYFDQAVKA 218 (223)
Q Consensus 166 ~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~-~-----eeAi~~fekAL~l 218 (223)
..++|++|..+|+-|++. +..+ +-|..+++ . .+..+|+++|-++
T Consensus 22 ~a~nY~eA~~lY~~aleY--------F~~~-lKYE~~~~kaKd~IraK~~EYLdRAEkL 71 (439)
T KOG0739|consen 22 NAKNYEEALRLYQNALEY--------FLHA-LKYEANNKKAKDSIRAKFTEYLDRAEKL 71 (439)
T ss_pred chhchHHHHHHHHHHHHH--------HHHH-HHhhhcChhHHHHHHHHHHHHHHHHHHH
Confidence 346788888888877762 3333 44443443 2 2345566666543
No 461
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=28.61 E-value=83 Score=26.93 Aligned_cols=14 Identities=64% Similarity=1.206 Sum_probs=7.7
Q ss_pred ccccCCCCCCCCCC
Q 027439 99 GGGIYGGGGNMCGG 112 (223)
Q Consensus 99 g~g~~g~gg~~~g~ 112 (223)
|+|+++++++|.|+
T Consensus 6 gggg~~g~~gfRgg 19 (215)
T KOG3262|consen 6 GGGGGGGGGGFRGG 19 (215)
T ss_pred CCCCCCCCCCcccC
Confidence 45555555556554
No 462
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.90 E-value=1.3e+02 Score=25.95 Aligned_cols=57 Identities=9% Similarity=-0.080 Sum_probs=38.8
Q ss_pred CccccccCCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 027439 124 RWGSWDPNNHGNNSTDLYYQKMIQADPRN------PLLLSNYARFLKEARGDLLKAEEYCARAI 181 (223)
Q Consensus 124 ~gg~~Y~~~gd~~eA~~~y~~aLeldP~n------~~~l~nlA~~l~~~~gdyeeA~~~~ekAL 181 (223)
.-++.|...|++++|.++|+.+....-.. ..++..+..+.+ ..++.+..+.++-+++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~-~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAK-RLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHh
Confidence 35677788899999999999997553221 344455554455 4788887777765554
No 463
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=27.89 E-value=1.4e+02 Score=29.80 Aligned_cols=46 Identities=9% Similarity=0.018 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027439 136 NSTDLYYQKMIQA-----DPRNPLLLSNYARFLKEARGDLLKAEEYCARAIL 182 (223)
Q Consensus 136 ~eA~~~y~~aLel-----dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ 182 (223)
..++++|++||.. +..+..-|..+|-++| +.++|.+|+.++-.|-.
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~y-R~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHVYPYTYLGGYYY-RHKRYREALRSWAEAAD 346 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCccccceehhhHHH-HHHHHHHHHHHHHHHHH
Confidence 3455666666653 2333444666776667 68999999998877743
No 464
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=27.06 E-value=2.9e+02 Score=26.05 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=29.1
Q ss_pred HhCCHHHHHHHHHHHHHhCCC--C---HHHHHHHHH--HHHHHcCCHHHHHHHHHH
Q 027439 166 ARGDLLKAEEYCARAILMSPN--D---GNVLSMYGD--LIWQSHKDASRAESYFDQ 214 (223)
Q Consensus 166 ~~gdyeeA~~~~ekAL~ldP~--d---~~~l~~lA~--ll~~~~G~~eeAi~~fek 214 (223)
...+|..|...|+.++...+. . ...+..++. .+|. .-++++|.+++++
T Consensus 142 n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD-~fd~~~A~~~L~~ 196 (380)
T TIGR02710 142 NAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWD-RFEHEEALDYLND 196 (380)
T ss_pred HhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHH-ccCHHHHHHHHhh
Confidence 357888888888888776432 1 122222222 2566 7778888888773
No 465
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=27.06 E-value=1.4e+02 Score=31.32 Aligned_cols=78 Identities=13% Similarity=0.006 Sum_probs=40.7
Q ss_pred CCCccccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHH
Q 027439 122 DGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVL-SMYGDLIWQ 200 (223)
Q Consensus 122 ~~~gg~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l-~~lA~ll~~ 200 (223)
+|.=++-|...++|+.|+++|.++=.. +=|..+|-+.+++++|.++-++... |.+...+ ...|.-+-.
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~~~---------~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedlde 836 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEADLF---------KDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDE 836 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcchh---------HHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHh
Confidence 444556677778888888888654221 1122233346777777776666543 4443332 222322333
Q ss_pred HcCCHHHHHHH
Q 027439 201 SHKDASRAESY 211 (223)
Q Consensus 201 ~~G~~eeAi~~ 211 (223)
+|+|.+|.+.
T Consensus 837 -hgkf~eaeql 846 (1636)
T KOG3616|consen 837 -HGKFAEAEQL 846 (1636)
T ss_pred -hcchhhhhhe
Confidence 5555555443
No 466
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=27.05 E-value=90 Score=29.63 Aligned_cols=13 Identities=38% Similarity=0.314 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 027439 170 LLKAEEYCARAIL 182 (223)
Q Consensus 170 yeeA~~~~ekAL~ 182 (223)
+.+|+.++++|..
T Consensus 334 ~~~Al~yL~kA~d 346 (404)
T PF12753_consen 334 IKKALEYLKKAQD 346 (404)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 4444444444443
No 467
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=27.02 E-value=2e+02 Score=28.74 Aligned_cols=29 Identities=7% Similarity=-0.154 Sum_probs=15.9
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 027439 167 RGDLLKAEEYCARAILMSPNDGNVLSMYG 195 (223)
Q Consensus 167 ~gdyeeA~~~~ekAL~ldP~d~~~l~~lA 195 (223)
..++.+|++.+.-.++.|..|..+.-.+-
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i 246 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEII 246 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHH
Confidence 45556666666655555555555544443
No 468
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=26.26 E-value=1.7e+02 Score=19.90 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=9.0
Q ss_pred cCCHHHHHHHHHHHH
Q 027439 202 HKDASRAESYFDQAV 216 (223)
Q Consensus 202 ~G~~eeAi~~fekAL 216 (223)
.|++++|.+|+++..
T Consensus 36 lg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 36 LGKYEEAKEYIKELS 50 (62)
T ss_dssp TT-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 666666666666654
No 469
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.86 E-value=2.1e+02 Score=26.40 Aligned_cols=50 Identities=8% Similarity=0.111 Sum_probs=39.8
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027439 167 RGDLLKAEEYCARAILMSPNDGN----VLSMYGDLIWQSHKDASRAESYFDQAVK 217 (223)
Q Consensus 167 ~gdyeeA~~~~ekAL~ldP~d~~----~l~~lA~ll~~~~G~~eeAi~~fekAL~ 217 (223)
..+.++|+.-|++.+++.+.-+. ++-.+-.+.|. +++|++-..+|.+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~-l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFR-LGNYKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhc-cccHHHHHHHHHHHHH
Confidence 46889999999999999987653 34445556777 9999999999988775
No 470
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=25.58 E-value=1.6e+02 Score=23.68 Aligned_cols=34 Identities=18% Similarity=0.081 Sum_probs=24.9
Q ss_pred CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 027439 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLK 164 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~ 164 (223)
..+++.-|..+.+.++..+|+|..+..-.+.++.
T Consensus 82 ~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~ 115 (141)
T PF14863_consen 82 AAGDYQWAAELLDHLVFADPDNEEARQLKADALE 115 (141)
T ss_dssp HCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 3578999999999999999999988777775554
No 471
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=25.45 E-value=1.8e+02 Score=29.72 Aligned_cols=48 Identities=19% Similarity=0.172 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 027439 168 GDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVKAA 219 (223)
Q Consensus 168 gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~ 219 (223)
.+|..|+++|.+.- -+-.-+|..+|.++++ .+++..|+.-|.+++++-
T Consensus 570 ErYqlaV~mckKc~---iD~f~aW~AWGlA~Lk-~e~~aaAR~KFkqafklk 617 (1141)
T KOG1811|consen 570 ERYQLAVEMCKKCG---IDTFGAWHAWGLACLK-AENLAAAREKFKQAFKLK 617 (1141)
T ss_pred HHHHHHHHHHhhcC---CCcccHHHHHHHHHHH-hhhHHHHHHHHHHHhCCC
Confidence 46777777776652 2334578888877787 999999999999999875
No 472
>PRK11619 lytic murein transglycosylase; Provisional
Probab=24.87 E-value=4.9e+02 Score=26.16 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=36.3
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 027439 166 ARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAVK 217 (223)
Q Consensus 166 ~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL~ 217 (223)
+.++.+.+...+...-...-......+.+|..+.. .|+.++|..+|+++..
T Consensus 324 ~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~-~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLE-QGRKAEAEEILRQLMQ 374 (644)
T ss_pred HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHH-cCCHHHHHHHHHHHhc
Confidence 35666666666666443334566777888877777 8999999999999743
No 473
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=24.51 E-value=4.7e+02 Score=27.50 Aligned_cols=69 Identities=20% Similarity=0.196 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Q 027439 153 PLLLSNYARFLKEARGDLLKAEEYCARAILMSPN--D-------GNVLSMYGDLIWQSHKDASRAESYFDQAVKAAPDDW 223 (223)
Q Consensus 153 ~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~--d-------~~~l~~lA~ll~~~~G~~eeAi~~fekAL~l~Pdn~ 223 (223)
+.....+|+.+. -+.+|.+|..+..++-..-+. + .......|.+... .+++++|+++.+.++..-|.++
T Consensus 415 P~Lvll~aW~~~-s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~-~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 415 PRLVLLQAWLLA-SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALN-RGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred chHHHHHHHHHH-HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhccccc
Confidence 344455664444 478999999988887665443 1 1222233333444 8999999999999998877653
No 474
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=24.35 E-value=2.4e+02 Score=28.24 Aligned_cols=77 Identities=8% Similarity=-0.033 Sum_probs=45.5
Q ss_pred CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHc
Q 027439 131 NNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSP--------NDGNVLSMYGDLIWQSH 202 (223)
Q Consensus 131 ~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP--------~d~~~l~~lA~ll~~~~ 202 (223)
...++++|+.+++-. .+...|..+| .+..+..+..-++..|-.+.+++. +-+.--..+|..... .
T Consensus 585 sssKWeqavRLCrfv-----~eqTMWAtlA-a~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~mA~~~l~-~ 657 (737)
T KOG1524|consen 585 SSSKWEQAVRLCRFV-----QEQTMWATLA-AVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQMAENSLM-L 657 (737)
T ss_pred ccchHHHHHHHHHhc-----cchHHHHHHH-HHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHHHHHHHHH-h
Confidence 346889998888653 3456677777 455456677666666666655431 111122345544555 6
Q ss_pred CCHHHHHHHHHH
Q 027439 203 KDASRAESYFDQ 214 (223)
Q Consensus 203 G~~eeAi~~fek 214 (223)
|+..+|...+.+
T Consensus 658 G~~~eAe~iLl~ 669 (737)
T KOG1524|consen 658 GRMLEAETILLH 669 (737)
T ss_pred ccchhhhHHHHh
Confidence 777777665544
No 475
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.34 E-value=92 Score=32.48 Aligned_cols=45 Identities=27% Similarity=0.430 Sum_probs=24.0
Q ss_pred HhCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027439 166 ARGDLLKAEEYCARAILMSPND-GNVLSMYGDLIWQSHKDASRAESYFDQA 215 (223)
Q Consensus 166 ~~gdyeeA~~~~ekAL~ldP~d-~~~l~~lA~ll~~~~G~~eeAi~~fekA 215 (223)
..|+|++|.+++... |+. -.++...|+.++. .++|.+|.++|-+.
T Consensus 370 d~g~y~kAL~~ar~~----p~~le~Vl~~qAdf~f~-~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 370 DKGEFDKALEIARTR----PDALETVLLKQADFLFQ-DKEYLRAAEIYAET 415 (911)
T ss_pred hcchHHHHHHhccCC----HHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHh
Confidence 356666666655543 211 1345556665555 55666666555443
No 476
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=24.32 E-value=1.1e+02 Score=18.64 Aligned_cols=11 Identities=0% Similarity=-0.167 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 027439 171 LKAEEYCARAI 181 (223)
Q Consensus 171 eeA~~~~ekAL 181 (223)
.+++.+++..+
T Consensus 21 ~~Gi~lLe~l~ 31 (35)
T PF14852_consen 21 QEGIALLEELY 31 (35)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 477
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=24.01 E-value=1.7e+02 Score=23.64 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=36.9
Q ss_pred cCCCChHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 027439 130 PNNHGNNSTDLYYQKMIQADPR---------------NPLLLSNYARFLKEARGDLLKAEEYCARAIL 182 (223)
Q Consensus 130 ~~~gd~~eA~~~y~~aLeldP~---------------n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ 182 (223)
.+++++-.++-+|++|+.+-.+ .+....|+|.++. .+++.+-.++|++-|-+
T Consensus 12 ~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR-~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 12 FKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWR-SQGDSDYELKYLQLASE 78 (140)
T ss_pred hhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHH-HcCChHHHHHHHHHHHH
Confidence 3467888899999999864211 1344678997766 47998888888876544
No 478
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.94 E-value=6.2e+02 Score=27.71 Aligned_cols=69 Identities=22% Similarity=0.120 Sum_probs=47.5
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 027439 134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFD 213 (223)
Q Consensus 134 d~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fe 213 (223)
-|++|-+.|++ ..-|..+. .++.+.-+..+.|.++.++. +.+.+|..+|.+.+. .+...+|++-|-
T Consensus 1063 LyEEAF~ifkk----f~~n~~A~----~VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~-~~~v~dAieSyi 1128 (1666)
T KOG0985|consen 1063 LYEEAFAIFKK----FDMNVSAI----QVLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQ-GGLVKDAIESYI 1128 (1666)
T ss_pred HHHHHHHHHHH----hcccHHHH----HHHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHh-cCchHHHHHHHH
Confidence 45555555533 23344444 34445567888888887764 567899999988777 899999999998
Q ss_pred HHH
Q 027439 214 QAV 216 (223)
Q Consensus 214 kAL 216 (223)
||-
T Consensus 1129 kad 1131 (1666)
T KOG0985|consen 1129 KAD 1131 (1666)
T ss_pred hcC
Confidence 874
No 479
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=23.89 E-value=1.6e+02 Score=30.61 Aligned_cols=11 Identities=9% Similarity=0.099 Sum_probs=7.8
Q ss_pred CChHHHHHHHH
Q 027439 133 HGNNSTDLYYQ 143 (223)
Q Consensus 133 gd~~eA~~~y~ 143 (223)
|.|++|++.|-
T Consensus 748 g~feeaek~yl 758 (1189)
T KOG2041|consen 748 GEFEEAEKLYL 758 (1189)
T ss_pred cchhHhhhhhh
Confidence 47777777773
No 480
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.79 E-value=3.3e+02 Score=24.93 Aligned_cols=58 Identities=22% Similarity=0.338 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 027439 157 SNYARFLKEARGDLLKAEEYCARAILMSP-------NDGNVLSMYGDLIWQSHKDASRAESYFDQA 215 (223)
Q Consensus 157 ~nlA~~l~~~~gdyeeA~~~~ekAL~ldP-------~d~~~l~~lA~ll~~~~G~~eeAi~~fekA 215 (223)
.|++..+......-.+-..+.++||+-.. .+|..|..+|..+|. .++..+|..+|-.+
T Consensus 89 anl~~ll~e~~~~eper~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~-e~~~~~a~~HFll~ 153 (312)
T KOG3024|consen 89 ANLAELLGEADPSEPERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWT-EDNVEEARRHFLLS 153 (312)
T ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh-cccHHHHHhHhhhc
Confidence 34444444322334445556777776543 378999999998888 88999999888643
No 481
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=22.83 E-value=6.5e+02 Score=23.73 Aligned_cols=47 Identities=11% Similarity=-0.006 Sum_probs=31.6
Q ss_pred CCChHHHHHHHHHHHHhCCC--C---HHHHHHHHHHHHH-HhCCHHHHHHHHH
Q 027439 132 NHGNNSTDLYYQKMIQADPR--N---PLLLSNYARFLKE-ARGDLLKAEEYCA 178 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLeldP~--n---~~~l~nlA~~l~~-~~gdyeeA~~~~e 178 (223)
..+|..|...|+++.+..+. . ...+..++..+.. ..-++++|.++++
T Consensus 143 ~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 143 AFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred hcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 48999999999999987542 1 2333444433322 2468899999888
No 482
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=22.56 E-value=1.4e+02 Score=28.74 Aligned_cols=56 Identities=23% Similarity=0.254 Sum_probs=34.7
Q ss_pred CCChHHHHHHHHHHHHh--CCCC--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 027439 132 NHGNNSTDLYYQKMIQA--DPRN--PLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDG 188 (223)
Q Consensus 132 ~gd~~eA~~~y~~aLel--dP~n--~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~ 188 (223)
++.|++|...-.+..-- ..+| +.+++.+|+ ++..+.+|..|.+++-+|+...|++.
T Consensus 222 n~lydqa~~lvsK~~~pe~~snne~ARY~yY~Gr-IkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 222 NKLYDQADKLVSKSVYPEAASNNEWARYLYYLGR-IKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred hHHHHHHHHHhhcccCccccccHHHHHHHHHHhh-HHHhhcchhHHHHHHHHHHHhCcchh
Confidence 35566666665554411 1122 233444453 33357899999999999999999754
No 483
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=22.19 E-value=2.8e+02 Score=24.10 Aligned_cols=68 Identities=13% Similarity=0.093 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 027439 150 PRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQS----HKDASRAESYFDQAVKA 218 (223)
Q Consensus 150 P~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~----~G~~eeAi~~fekAL~l 218 (223)
...+.....|+.++---+++|++|...|..-..-+. .+..-+.|+..++.- .+++..|++.|+.+-..
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~ 102 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA 102 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc
Confidence 456777888887776667899999999988877543 566777888543321 23788999999988654
No 484
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=21.90 E-value=67 Score=32.06 Aligned_cols=18 Identities=44% Similarity=0.650 Sum_probs=10.5
Q ss_pred eeecccc-CCCCCCCCCCC
Q 027439 96 VLVGGGI-YGGGGNMCGGG 113 (223)
Q Consensus 96 ~~~g~g~-~g~gg~~~g~~ 113 (223)
...|||| +|+.|+|+||.
T Consensus 614 ~~~~~~~~~~~~~~~~~~~ 632 (653)
T PTZ00009 614 QAAGGGMPGGMPGGMPGGM 632 (653)
T ss_pred hhccCCCCCCCCCCCCCCC
Confidence 3467777 44456666653
No 485
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=21.47 E-value=2.3e+02 Score=22.26 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 027439 158 NYARFLKEARGDLLKAEEYCARAILMSPNDGNVL 191 (223)
Q Consensus 158 nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l 191 (223)
.+|..+. ..|++++|+.+|-+|+...|+-...+
T Consensus 68 ~lGE~L~-~~G~~~~aa~hf~nAl~V~~qP~~LL 100 (121)
T PF02064_consen 68 QLGEQLL-AQGDYEEAAEHFYNALKVCPQPAELL 100 (121)
T ss_dssp HHHHHHH-HTT-HHHHHHHHHHHHHTSSSHHHHH
T ss_pred HHHHHHH-hCCCHHHHHHHHHHHHHhCCCHHHHH
Confidence 4565555 47999999999999999998544433
No 486
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=21.28 E-value=1.9e+02 Score=24.96 Aligned_cols=19 Identities=5% Similarity=-0.076 Sum_probs=11.5
Q ss_pred cCCCChHHHHHHHHHHHHh
Q 027439 130 PNNHGNNSTDLYYQKMIQA 148 (223)
Q Consensus 130 ~~~gd~~eA~~~y~~aLel 148 (223)
...+.|+.-..+++++=..
T Consensus 124 p~SgSWQDLKDHmReaGdv 142 (241)
T KOG0105|consen 124 PPSGSWQDLKDHMREAGDV 142 (241)
T ss_pred CCCCchHHHHHHHHhhCCe
Confidence 3346677777777666443
No 487
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=21.15 E-value=2.3e+02 Score=22.59 Aligned_cols=26 Identities=23% Similarity=0.110 Sum_probs=17.6
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 027439 162 FLKEARGDLLKAEEYCARAILMSPNDG 188 (223)
Q Consensus 162 ~l~~~~gdyeeA~~~~ekAL~ldP~d~ 188 (223)
+++. .|+|+.|+.+.+-||+.+=.-|
T Consensus 57 W~~D-~Gd~~~AL~~a~yAi~~~l~~P 82 (132)
T PF05944_consen 57 WLFD-VGDFDGALDIAEYAIEHGLPMP 82 (132)
T ss_pred hhhc-ccCHHHHHHHHHHHHHcCCCcc
Confidence 4554 5778888888887777764444
No 488
>PRK06341 single-stranded DNA-binding protein; Provisional
Probab=20.78 E-value=86 Score=26.02 Aligned_cols=17 Identities=53% Similarity=0.835 Sum_probs=6.6
Q ss_pred ccccCCCCCCCCCCCCC
Q 027439 99 GGGIYGGGGNMCGGGGG 115 (223)
Q Consensus 99 g~g~~g~gg~~~g~~~g 115 (223)
|||++++++.+.||..+
T Consensus 120 ~~~~~~~~~~~~~~~~~ 136 (166)
T PRK06341 120 GGGGGGGGDDGGGGDFG 136 (166)
T ss_pred CCCCCCCCCccCCCccc
Confidence 34433333334444333
No 489
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling [] and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding [].; PDB: 3IHV_A 3LEW_A 3JQ1_A 3JQ0_A 3NQP_B 3SNX_A 3L22_A 3OTN_A 3IV0_A 3QNK_C ....
Probab=20.32 E-value=2.1e+02 Score=23.78 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 027439 153 PLLLSNYARFLKEARGDLLKAEEYCAR 179 (223)
Q Consensus 153 ~~~l~nlA~~l~~~~gdyeeA~~~~ek 179 (223)
++++..+|.++. ++++..+|++++.+
T Consensus 133 aEvyL~~AEA~~-~~g~~~~A~~~lN~ 158 (266)
T PF07980_consen 133 AEVYLIYAEALA-RLGNTAEALEYLNQ 158 (266)
T ss_dssp HHHHHHHHHHHH-HTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhCCHHHHHHHHHH
Confidence 678888888777 48888887776655
No 490
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=20.22 E-value=1.7e+02 Score=23.04 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 027439 136 NSTDLYYQKMI--QADPRNPLLLSNYARFLKEARGDLLKAEEYCAR 179 (223)
Q Consensus 136 ~eA~~~y~~aL--eldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ek 179 (223)
+++.+.|+.+. .+.-..+.++..+| .+.+..+++.+|.+.|++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A-~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWA-QLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHH-HHHHHcCCHHHHHHHHHc
No 491
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.18 E-value=1.3e+02 Score=31.32 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 027439 163 LKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIWQSHKDASRAESYFDQAV 216 (223)
Q Consensus 163 l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~~~~G~~eeAi~~fekAL 216 (223)
+..+..-|+-|+.+.+.--.--..-..++..||+.+|. .|++++|...|.+.+
T Consensus 343 iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~-Kgdf~~A~~qYI~tI 395 (933)
T KOG2114|consen 343 ILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYG-KGDFDEATDQYIETI 395 (933)
T ss_pred HHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHc
No 492
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=20.15 E-value=1.6e+02 Score=29.29 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=0.0
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLKAEEYCARA 180 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekA 180 (223)
+..+...+..++|.++|++.+..+|+ ..+..+|.-++ +.|-...|...+++.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~ 100 (578)
T PRK15490 49 AEFLHDVNETERAYALYETLIAQNND--EARYEYARRLY-NTGLAKDAQLILKKV 100 (578)
T ss_pred hhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHH-hhhhhhHHHHHHHHh
No 493
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=20.06 E-value=4.4e+02 Score=20.71 Aligned_cols=80 Identities=11% Similarity=0.103 Sum_probs=0.0
Q ss_pred ccCCCChHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 027439 129 DPNNHGNNSTDLYYQKMIQA---------DPRNPLLLSNYARFLKEARGDLLKAEEYCARAILMSPNDGNVLSMYGDLIW 199 (223)
Q Consensus 129 Y~~~gd~~eA~~~y~~aLel---------dP~n~~~l~nlA~~l~~~~gdyeeA~~~~ekAL~ldP~d~~~l~~lA~ll~ 199 (223)
|...+.-..-..+++++++. ||....+|..++ ....+ ..-+-.+-..-.+.-..+..+..+|..+-
T Consensus 36 ~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya----~~~~d-p~~if~~L~~~~IG~~~AlfYe~~A~~lE 110 (125)
T smart00777 36 YPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYA----DNCDE-PRELFQFLYSKGIGTKLALFYEEWAQLLE 110 (125)
T ss_pred CCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHH----HhcCC-HHHHHHHHHHCCcchhhHHHHHHHHHHHH
Q ss_pred HHcCCHHHHHHHHHH
Q 027439 200 QSHKDASRAESYFDQ 214 (223)
Q Consensus 200 ~~~G~~eeAi~~fek 214 (223)
. .|++.+|...|+.
T Consensus 111 ~-~g~~~~A~~iy~~ 124 (125)
T smart00777 111 A-AGRYKKADEVYQL 124 (125)
T ss_pred H-cCCHHHHHHHHHc
No 494
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=20.01 E-value=1.4e+02 Score=35.80 Aligned_cols=89 Identities=9% Similarity=0.094 Sum_probs=0.0
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHH-------HHHHHHHHHHhCCCCHHHHHHHHHHH
Q 027439 126 GSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEARGDLLK-------AEEYCARAILMSPNDGNVLSMYGDLI 198 (223)
Q Consensus 126 g~~Y~~~gd~~eA~~~y~~aLeldP~n~~~l~nlA~~l~~~~gdyee-------A~~~~ekAL~ldP~d~~~l~~lA~ll 198 (223)
|-...+.+++++|.+.|..|++++-.-+.+|...|.++..+...-.. |+.+|-+|.. .-++..++-.++.++
T Consensus 2819 G~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~-~~~~skaRk~iakvL 2897 (3550)
T KOG0889|consen 2819 GMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAAR-LYNSSKARKLIAKVL 2897 (3550)
T ss_pred hHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhc-cccchhhHHHHHHHH
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 027439 199 WQSHKDASRAESYFDQAVK 217 (223)
Q Consensus 199 ~~~~G~~eeAi~~fekAL~ 217 (223)
|. =.+++|-...-+++.
T Consensus 2898 wL--ls~dda~~~l~~~~~ 2914 (3550)
T KOG0889|consen 2898 WL--LSFDDSLGTLGDVFD 2914 (3550)
T ss_pred HH--HHhccccchHHHHHH
Done!