BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027440
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KEV|A Chain A, X-Ray Crystal Structure Of A Dcun1 Domain-Containing
Protein From Galdieria Sulfuraria
Length = 199
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 114/199 (57%), Gaps = 8/199 (4%)
Query: 26 SGKAKAKEIENFFDKYAN--GGIIDSPDGIVTLCKDLELEYTDVRILMLAWYLKAVKLGY 83
S +A K I F Y G I + +G+ L +D++++ +DV L+LAW LKA
Sbjct: 1 SKRADKKAILELFQTYKEPLGNYIGA-EGLQRLFEDIQVDPSDVVTLVLAWKLKASSTXE 59
Query: 84 FTQDEWETGLKTLQVNNLSKLKKAISELEKEVRTPPNFADFYSFAFRYHLTEEKQKNIDI 143
F++ E+ GL LQV++L KLK+ +S L KE+ P F FY F F+Y E Q+++
Sbjct: 60 FSEKEFVEGLANLQVDSLEKLKRKLSSLRKEIEDPSKFRAFYQFVFQYS-KEPSQRSLPA 118
Query: 144 ETICELLNLVLGPQFRRQVDLLIDYLKVQSNYKVINLDQWLGIFRFCNEISFPDLENYDE 203
ET L +++L +F +D +++LK +N I+ D W ++ F ++S DL +YDE
Sbjct: 119 ETAXALWDVLLRGRFSL-LDSWLEFLK--NNTHSISRDTWNLLYDFS-QLSEKDLSDYDE 174
Query: 204 TQAWPLILDNFVDWLRENH 222
AWP+++D+FV WL+
Sbjct: 175 NGAWPVLIDDFVKWLKHEQ 193
>pdb|3TDU|A Chain A, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDU|B Chain B, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDZ|A Chain A, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
pdb|3TDZ|B Chain B, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
Length = 200
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 106/194 (54%), Gaps = 14/194 (7%)
Query: 32 KEIENFFDKYANG------GIIDSPDGIVTLCKDLELEYTDVRILMLAWYLKAVKLGYFT 85
K++E +++Y + GI DGI C DL L+ + +L++AW +A F+
Sbjct: 4 KKLEQLYNRYKDPQDENKIGI----DGIQQFCDDLALDPASISVLIIAWKFRAATQCEFS 59
Query: 86 QDEWETGLKTLQVNNLSKLKKAISELEKEVRTPPNFADFYSFAFRYHLTEEKQKNIDIET 145
+ E+ G+ L +++ KLK I ++E+E++ P F DFY F F + QK +D+E
Sbjct: 60 KQEFMDGMTELGCDSIEKLKAQIPKMEQELKEPGRFKDFYQFTFNFA-KNPGQKGLDLEM 118
Query: 146 ICELLNLVLGPQFRRQVDLLIDYLKVQSNYKVINLDQWLGIFRFCNEISFPDLENYDETQ 205
NLVL +F+ +DL +L ++ + + I D W + F I+ D+ NYDE
Sbjct: 119 AIAYWNLVLNGRFKF-LDLWNKFL-LEHHKRSIPKDTWNLLLDFSTMIA-DDMSNYDEEG 175
Query: 206 AWPLILDNFVDWLR 219
AWP+++D+FV++ R
Sbjct: 176 AWPVLIDDFVEFAR 189
>pdb|4GAO|A Chain A, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|B Chain B, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|D Chain D, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|G Chain G, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
Length = 200
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 93/169 (55%), Gaps = 4/169 (2%)
Query: 51 DGIVTLCKDLELEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKTLQVNNLSKLKKAISE 110
DGI C DL L+ + +L++AW +A F++ E+ G+ L +++ KLK +
Sbjct: 25 DGIQQFCDDLSLDPASISVLVIAWKFRAATQCEFSRKEFLDGMTELGCDSMEKLKALLPR 84
Query: 111 LEKEVRTPPNFADFYSFAFRYHLTEEKQKNIDIETICELLNLVLGPQFRRQVDLLIDYLK 170
LE+E++ F DFY F F + QK +D+E LVL +F+ +DL +L
Sbjct: 85 LEQELKDTAKFKDFYQFTFTFA-KNPGQKGLDLEMAVAYWKLVLSGRFKF-LDLWNTFL- 141
Query: 171 VQSNYKVINLDQWLGIFRFCNEISFPDLENYDETQAWPLILDNFVDWLR 219
++ + + I D W + F N I+ D+ NYDE AWP+++D+FV++ R
Sbjct: 142 MEHHKRSIPRDTWNLLLDFGNMIA-DDMSNYDEEGAWPVLIDDFVEYAR 189
>pdb|4GBA|A Chain A, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GBA|B Chain B, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
Length = 221
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 98/202 (48%), Gaps = 8/202 (3%)
Query: 27 GKAKAKEIENFFDKYAN---GGIIDSPDGIVTLCKDLELEYTDVRILMLAWYLKAVKLGY 83
G + + +E F +Y + I++ +G+ C DL ++ T+ R+L+LAW +A +
Sbjct: 1 GSSSLQRLEELFRRYKDEREDAILE--EGMERFCNDLCVDPTEFRVLLLAWKFQAATMCK 58
Query: 84 FTQDEWETGLKTLQVNNLSKLKKAISELEKEVRTPPNFADFYSFAFRYHL-TEEKQKNID 142
FT+ E+ G K + +++ + L E + F D Y F F++ L +EE Q+++
Sbjct: 59 FTRKEFFDGCKAISADSIDGICARFPSLLTEAKQEDKFKDLYRFTFQFGLDSEEGQRSLH 118
Query: 143 IETICELLNLVLGPQFRRQVDLLIDYLKVQ-SNYKVINLDQWLGIFRFCNEISFPDLENY 201
E L LV +D +++L S K I+ D W F I PDL NY
Sbjct: 119 REIAIALWKLVFTQNNPPVLDQWLNFLTENPSGIKGISRDTWNMFLNFTQVIG-PDLSNY 177
Query: 202 DETQAWPLILDNFVDWLRENHR 223
E +AWP + D FV+W E +
Sbjct: 178 SEDEAWPSLFDTFVEWEMERRK 199
>pdb|3O2P|A Chain A, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb)
pdb|3O6B|A Chain A, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|C Chain C, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|E Chain E, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|G Chain G, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|I Chain I, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3TDI|B Chain B, Yeast Cul1whb-Dcn1p Acetylated Ubc12n Complex
pdb|3TDI|A Chain A, Yeast Cul1whb-Dcn1p Acetylated Ubc12n Complex
Length = 202
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 14/206 (6%)
Query: 27 GKAKAKEIENFFDKYANGGIIDSPDGIVTLCKDLELEYTDVRILMLAWYLKAVKLGY-FT 85
G KE+ F+ Y N + D D +V ++L D+ L LA L KL
Sbjct: 1 GSVYPKELTQVFEHYINNNLFDI-DSLVKFIEELGYNLEDLATLCLAHLLGYKKLEEPLK 59
Query: 86 QDEWETGLKTLQVNNLSKLKKAISELEKEVRTPPN-FADFYSFAFRYHLTEEKQKNIDIE 144
++++ + + +S +++ I L+ ++ F Y++AF L + +K+ID +
Sbjct: 60 REDFLSTWFMQGCSTISDMQECIKTLDVKLHEDLQYFTQIYNYAFNLIL-DPNRKDIDTD 118
Query: 145 TICELLNLVLGPQF--RRQVDLLIDYLKV--QSNYKVINLDQWLGIFRFCNEISFPDLE- 199
+ L P++ R + DLL + + I+ D W + F +P ++
Sbjct: 119 EGIQYWKLFFQPEYPVRMEPDLLEAWFRFLRDEGKTTISKDTWRMLLLFFKR--YPTIQK 176
Query: 200 ---NYDETQAWPLILDNFVDWLRENH 222
+YDET AWP I+D F + L++
Sbjct: 177 IISDYDETAAWPFIIDEFYECLQDQQ 202
>pdb|2IS9|A Chain A, Structure Of Yeast Dcn-1
Length = 204
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 91/201 (45%), Gaps = 14/201 (6%)
Query: 32 KEIENFFDKYANGGIIDSPDGIVTLCKDLELEYTDVRILMLAWYLKAVKLGY-FTQDEWE 90
KE+ F+ Y N + D D +V ++L D+ L LA L KL ++++
Sbjct: 8 KELTQVFEHYINNNLFDI-DSLVKFIEELGYNLEDLATLCLAHLLGYKKLEEPLKREDFL 66
Query: 91 TGLKTLQVNNLSKLKKAISELEKEVRTPPN-FADFYSFAFRYHLTEEKQKNIDIETICEL 149
+ + +S +++ I L+ ++ F Y++AF L + +K+ID + +
Sbjct: 67 STWFMQGCSTISDMQECIKTLDVKLHEDLQYFTQIYNYAFNLIL-DPNRKDIDTDEGIQY 125
Query: 150 LNLVLGPQF--RRQVDLLIDYLKV--QSNYKVINLDQWLGIFRFCNEISFPDLE----NY 201
L P++ R + DLL + + I+ D W + F +P ++ +Y
Sbjct: 126 WKLFFQPEYPVRMEPDLLEAWFRFLRDEGKTTISKDTWRMLLLFFK--RYPTIQKIISDY 183
Query: 202 DETQAWPLILDNFVDWLRENH 222
DET AWP I+D F + L++
Sbjct: 184 DETAAWPFIIDEFYECLQDQQ 204
>pdb|3BQ3|A Chain A, Crystal Structure Of S. Cerevisiae Dcn1
Length = 270
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 90/201 (44%), Gaps = 14/201 (6%)
Query: 32 KEIENFFDKYANGGIIDSPDGIVTLCKDLELEYTDVRILMLAWYLKAVKLGY-FTQDEWE 90
KE+ F+ Y N + D D +V ++L D+ L LA L KL ++++
Sbjct: 74 KELTQVFEHYINNNLFDI-DSLVKFIEELGYNLEDLATLCLAHLLGYKKLEEPLKREDFL 132
Query: 91 TGLKTLQVNNLSKLKKAISELEKEVRTPPN-FADFYSFAFRYHLTEEKQKNIDIETICEL 149
+ + +S ++ I L+ ++ F Y++AF L + +K+ID + +
Sbjct: 133 STWFXQGCSTISDXQECIKTLDVKLHEDLQYFTQIYNYAFNLIL-DPNRKDIDTDEGIQY 191
Query: 150 LNLVLGPQF--RRQVDLLIDYLKV--QSNYKVINLDQWLGIFRFCNEISFPDLE----NY 201
L P++ R + DLL + + I+ D W + F +P ++ +Y
Sbjct: 192 WKLFFQPEYPVRXEPDLLEAWFRFLRDEGKTTISKDTWRXLLLFFKR--YPTIQKIISDY 249
Query: 202 DETQAWPLILDNFVDWLRENH 222
DET AWP I+D F + L++
Sbjct: 250 DETAAWPFIIDEFYECLQDQQ 270
>pdb|1NG0|A Chain A, The Three-Dimensional Structure Of Cocksfoot Mottle
Virus At 2.7a Resolution
pdb|1NG0|B Chain B, The Three-Dimensional Structure Of Cocksfoot Mottle
Virus At 2.7a Resolution
pdb|1NG0|C Chain C, The Three-Dimensional Structure Of Cocksfoot Mottle
Virus At 2.7a Resolution
Length = 253
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 11 SAPQNPPAVKSSNARSGKAKAKEIENFFDKYANGGIIDS 49
S P NPPA S ++G+ + + ++FD G+I S
Sbjct: 37 SRPLNPPAAVGSTLKAGRGRTAGVSDWFDT----GMITS 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,905,248
Number of Sequences: 62578
Number of extensions: 285060
Number of successful extensions: 638
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 624
Number of HSP's gapped (non-prelim): 10
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)