Query 027440
Match_columns 223
No_of_seqs 118 out of 334
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 09:58:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027440.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027440hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3077 Uncharacterized conser 100.0 5E-64 1.1E-68 440.4 19.6 191 27-222 59-252 (260)
2 PF03556 Cullin_binding: Culli 100.0 1.4E-45 3E-50 291.8 9.6 116 101-219 1-117 (117)
3 KOG3077 Uncharacterized conser 93.6 0.083 1.8E-06 47.4 3.9 85 121-210 80-164 (260)
4 cd00051 EFh EF-hand, calcium b 93.6 0.42 9.1E-06 30.5 6.4 59 34-93 2-62 (63)
5 PF13833 EF-hand_8: EF-hand do 93.5 0.19 4E-06 33.3 4.6 50 45-95 3-53 (54)
6 PTZ00183 centrin; Provisional 92.1 2.8 6E-05 32.8 10.4 64 31-95 16-81 (158)
7 PTZ00183 centrin; Provisional 91.7 1.2 2.6E-05 34.9 7.9 82 29-112 50-136 (158)
8 cd05031 S-100A10_like S-100A10 91.5 0.71 1.5E-05 34.3 6.1 67 31-98 7-82 (94)
9 cd05029 S-100A6 S-100A6: S-100 90.5 1.3 2.9E-05 32.9 6.7 64 33-97 11-81 (88)
10 cd00052 EH Eps15 homology doma 90.3 1.2 2.7E-05 29.9 6.0 60 35-97 2-63 (67)
11 smart00027 EH Eps15 homology d 89.5 1.1 2.3E-05 33.4 5.6 64 30-96 8-73 (96)
12 cd05030 calgranulins Calgranul 88.6 1.3 2.9E-05 32.7 5.5 65 32-97 8-81 (88)
13 PF13499 EF-hand_7: EF-hand do 87.6 2 4.4E-05 29.1 5.5 60 33-93 1-66 (66)
14 PTZ00184 calmodulin; Provision 87.1 3 6.5E-05 32.0 6.9 98 29-127 44-145 (149)
15 PTZ00184 calmodulin; Provision 86.2 13 0.00028 28.4 14.3 64 31-95 10-75 (149)
16 KOG0027 Calmodulin and related 84.8 6.3 0.00014 31.6 7.9 84 30-114 6-97 (151)
17 cd00213 S-100 S-100: S-100 dom 84.3 5.2 0.00011 28.9 6.6 64 32-96 8-80 (88)
18 KOG0036 Predicted mitochondria 80.4 5.6 0.00012 38.2 6.8 81 31-115 81-163 (463)
19 COG5126 FRQ1 Ca2+-binding prot 80.3 8.6 0.00019 32.2 7.2 68 27-95 87-156 (160)
20 PF13833 EF-hand_8: EF-hand do 80.2 3.6 7.8E-05 26.9 4.1 47 81-127 2-50 (54)
21 PF05517 p25-alpha: p25-alpha 79.6 9.2 0.0002 31.4 7.1 96 34-130 1-123 (154)
22 cd05022 S-100A13 S-100A13: S-1 78.8 12 0.00025 28.1 6.9 64 32-96 8-76 (89)
23 cd05025 S-100A1 S-100A1: S-100 78.4 14 0.00031 27.0 7.2 66 31-97 8-82 (92)
24 KOG0027 Calmodulin and related 78.3 25 0.00055 28.0 9.3 86 26-112 38-131 (151)
25 cd05027 S-100B S-100B: S-100B 77.7 13 0.00028 27.6 6.8 64 32-96 8-80 (88)
26 TIGR01446 DnaD_dom DnaD and ph 77.4 4.3 9.4E-05 28.6 4.0 55 47-105 16-72 (73)
27 KOG0028 Ca2+-binding protein ( 76.6 30 0.00066 29.3 9.3 101 30-131 31-135 (172)
28 cd05023 S-100A11 S-100A11: S-1 75.6 16 0.00034 27.2 6.8 65 32-97 9-82 (89)
29 cd05026 S-100Z S-100Z: S-100Z 74.2 20 0.00043 26.6 7.1 64 33-97 11-83 (93)
30 COG5126 FRQ1 Ca2+-binding prot 73.5 28 0.00061 29.2 8.4 84 30-115 15-105 (160)
31 PF00036 EF-hand_1: EF hand; 72.8 2.7 5.8E-05 25.0 1.6 20 77-96 10-29 (29)
32 PF09279 EF-hand_like: Phospho 71.3 9.8 0.00021 27.3 4.7 62 33-95 1-69 (83)
33 PF14658 EF-hand_9: EF-hand do 70.7 12 0.00025 27.0 4.8 50 45-95 13-64 (66)
34 KOG0030 Myosin essential light 67.2 41 0.00089 27.9 7.9 85 32-117 11-123 (152)
35 PLN02964 phosphatidylserine de 57.6 67 0.0015 32.6 9.1 80 32-114 143-227 (644)
36 cd00052 EH Eps15 homology doma 56.7 28 0.00061 23.0 4.5 33 76-109 8-40 (67)
37 smart00027 EH Eps15 homology d 55.7 24 0.00051 26.0 4.3 70 62-132 4-74 (96)
38 KOG2643 Ca2+ binding protein, 52.7 28 0.0006 33.9 5.2 83 45-132 301-389 (489)
39 KOG0036 Predicted mitochondria 51.8 1.1E+02 0.0024 29.7 9.0 86 31-117 13-117 (463)
40 cd03567 VHS_GGA VHS domain fam 51.0 1.3E+02 0.0028 24.3 9.1 91 35-126 3-129 (139)
41 KOG0028 Ca2+-binding protein ( 49.8 89 0.0019 26.5 7.2 64 31-95 105-170 (172)
42 cd00252 SPARC_EC SPARC_EC; ext 48.2 1.1E+02 0.0024 24.0 7.2 59 30-93 46-106 (116)
43 cd05022 S-100A13 S-100A13: S-1 47.5 47 0.001 24.7 4.8 68 67-134 7-79 (89)
44 PF13405 EF-hand_6: EF-hand do 47.4 23 0.0005 20.7 2.5 14 81-94 14-27 (31)
45 PF12763 EF-hand_4: Cytoskelet 46.9 41 0.00088 25.9 4.5 63 30-96 8-72 (104)
46 PF05042 Caleosin: Caleosin re 42.1 1.5E+02 0.0033 25.2 7.5 63 25-88 89-159 (174)
47 PF01314 AFOR_C: Aldehyde ferr 40.5 12 0.00026 35.1 0.7 36 53-89 116-151 (382)
48 PLN02223 phosphoinositide phos 39.7 68 0.0015 31.9 5.8 65 30-95 14-92 (537)
49 PF13499 EF-hand_7: EF-hand do 39.1 1.1E+02 0.0025 20.2 6.3 54 74-127 7-65 (66)
50 PRK10391 oriC-binding nucleoid 38.2 71 0.0015 23.3 4.3 40 85-126 2-41 (71)
51 smart00862 Trans_reg_C Transcr 36.9 99 0.0022 21.0 4.9 53 64-117 6-60 (78)
52 PLN02228 Phosphoinositide phos 36.4 1.3E+02 0.0027 30.3 7.1 65 30-95 22-92 (567)
53 KOG0034 Ca2+/calmodulin-depend 35.6 1.9E+02 0.0041 24.6 7.3 134 30-187 28-173 (187)
54 PF07531 TAFH: NHR1 homology t 35.3 47 0.001 25.6 3.1 64 52-121 12-83 (96)
55 PLN02230 phosphoinositide phos 34.9 1.1E+02 0.0024 30.9 6.5 66 29-95 26-102 (598)
56 PLN02222 phosphoinositide phos 34.6 94 0.002 31.2 5.9 64 30-95 23-90 (581)
57 cd05031 S-100A10_like S-100A10 32.3 84 0.0018 23.0 4.1 46 81-126 24-75 (94)
58 PF13348 Y_phosphatase3C: Tyro 31.6 24 0.00052 24.4 1.0 53 10-71 11-64 (68)
59 PF11116 DUF2624: Protein of u 30.4 2.4E+02 0.0052 21.3 6.6 52 45-97 13-64 (85)
60 PF04659 Arch_fla_DE: Archaeal 30.4 91 0.002 24.0 4.1 52 162-214 21-85 (99)
61 PF06535 RGM_N: Repulsive guid 30.1 14 0.0003 31.1 -0.5 11 201-212 120-130 (161)
62 PF13443 HTH_26: Cro/C1-type H 29.8 31 0.00068 23.1 1.3 35 30-67 23-57 (63)
63 PF09712 PHA_synth_III_E: Poly 29.1 1.7E+02 0.0037 26.6 6.3 37 50-87 115-159 (293)
64 PF07261 DnaB_2: Replication i 29.1 6.1 0.00013 27.7 -2.5 58 50-108 18-75 (77)
65 PF00486 Trans_reg_C: Transcri 29.1 1.3E+02 0.0028 20.5 4.5 50 67-117 9-59 (77)
66 KOG3924 Putative protein methy 28.8 1.3E+02 0.0029 28.9 5.6 71 27-98 154-248 (419)
67 PF06992 Phage_lambda_P: Repli 28.7 95 0.0021 27.6 4.4 31 85-115 66-96 (233)
68 PF13624 SurA_N_3: SurA N-term 28.4 53 0.0012 25.8 2.6 59 50-109 86-145 (154)
69 PF12174 RST: RCD1-SRO-TAF4 (R 28.2 39 0.00086 24.4 1.6 16 81-96 39-54 (70)
70 smart00054 EFh EF-hand, calciu 27.4 94 0.002 15.7 2.8 19 77-95 10-28 (29)
71 COG3710 CadC DNA-binding winge 26.1 90 0.0019 25.5 3.6 71 60-132 28-103 (148)
72 KOG2873 Ubiquinol cytochrome c 25.6 1.6E+02 0.0035 26.9 5.3 49 121-172 201-252 (284)
73 TIGR01565 homeo_ZF_HD homeobox 25.6 1.4E+02 0.003 20.8 3.9 35 32-67 14-49 (58)
74 PF14788 EF-hand_10: EF hand; 25.0 2.1E+02 0.0046 19.5 4.6 46 50-95 4-49 (51)
75 PF08671 SinI: Anti-repressor 24.8 87 0.0019 19.0 2.4 27 164-191 4-30 (30)
76 PLN02952 phosphoinositide phos 24.2 2.1E+02 0.0046 28.9 6.4 66 29-95 35-110 (599)
77 cd00383 trans_reg_C Effector d 24.2 1.7E+02 0.0036 20.7 4.4 55 62-117 22-77 (95)
78 PRK09849 putative oxidoreducta 24.1 96 0.0021 31.9 4.0 31 54-86 370-400 (702)
79 PF00046 Homeobox: Homeobox do 24.0 79 0.0017 20.6 2.4 35 31-69 12-46 (57)
80 PF07864 DUF1651: Protein of u 23.9 52 0.0011 23.6 1.6 22 138-159 47-68 (75)
81 cd05025 S-100A1 S-100A1: S-100 23.7 1.1E+02 0.0024 22.2 3.4 55 78-132 21-82 (92)
82 PLN02964 phosphatidylserine de 23.4 3E+02 0.0065 28.1 7.3 61 34-95 181-243 (644)
83 cd05026 S-100Z S-100Z: S-100Z 23.4 1.7E+02 0.0037 21.5 4.4 52 80-131 24-82 (93)
84 cd04766 HTH_HspR Helix-Turn-He 23.2 79 0.0017 23.1 2.5 43 50-116 47-89 (91)
85 PF10036 RLL: Putative carniti 23.2 87 0.0019 27.8 3.2 28 50-77 57-85 (249)
86 cd05029 S-100A6 S-100A6: S-100 23.2 1.8E+02 0.0038 21.4 4.4 52 81-132 26-81 (88)
87 smart00164 TBC Domain in Tre-2 22.7 86 0.0019 25.5 2.9 124 29-157 70-197 (199)
88 PRK10945 gene expression modul 22.3 1.5E+02 0.0033 21.7 3.7 39 85-126 7-45 (72)
89 PHA01083 hypothetical protein 22.2 1.3E+02 0.0027 25.1 3.7 46 46-96 43-88 (149)
90 cd00213 S-100 S-100: S-100 dom 22.2 2.1E+02 0.0046 20.2 4.6 61 66-126 6-75 (88)
91 cd03568 VHS_STAM VHS domain fa 22.1 4.2E+02 0.0092 21.3 8.2 45 82-126 74-126 (144)
92 PF11772 EpuA: DNA-directed RN 21.4 69 0.0015 21.5 1.7 18 174-191 28-45 (47)
93 PF04508 Pox_A_type_inc: Viral 21.2 1.1E+02 0.0025 17.5 2.3 17 100-116 2-18 (23)
94 smart00530 HTH_XRE Helix-turn- 20.7 1.6E+02 0.0035 17.2 3.3 27 39-66 28-55 (56)
95 PF13591 MerR_2: MerR HTH fami 20.2 73 0.0016 23.3 1.8 20 50-69 45-64 (84)
No 1
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5e-64 Score=440.38 Aligned_cols=191 Identities=34% Similarity=0.700 Sum_probs=182.4
Q ss_pred CccCHHHHHHHHHhhcCC---CCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCccccccHHHHHHHHhhcCCCcHHH
Q 027440 27 GKAKAKEIENFFDKYANG---GIIDSPDGIVTLCKDLELEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKTLQVNNLSK 103 (223)
Q Consensus 27 ~~~~~~~l~~lF~~Y~d~---~~I~~~dGi~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~~ds~~~ 103 (223)
.+...+.++++|.+|+|+ +.|+ +|||.+||+||||+|+|+++|||||+|+|++||+|||++|+.||.++||||+++
T Consensus 59 ~~~s~~~l~~~f~~y~d~~d~~~i~-~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l~~dS~d~ 137 (260)
T KOG3077|consen 59 ARVSEKRLEELFNQYKDPDDDNLIG-PDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTALGCDSIDK 137 (260)
T ss_pred ccccHHHHHHHHHHhcCcccccccC-hHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHcCCCcHHH
Confidence 445889999999999998 4899 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHhHhhhccCccccccccHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCCccCChhhH
Q 027440 104 LKKAISELEKEVRTPPNFADFYSFAFRYHLTEEKQKNIDIETICELLNLVLGPQFRRQVDLLIDYLKVQSNYKVINLDQW 183 (223)
Q Consensus 104 lk~~l~~L~~~l~~~~~Fk~~Y~f~F~f~~~~~~qK~L~~e~Ai~~W~lll~~~~~~~l~~W~~Fl~~~~~~k~IskD~W 183 (223)
|++.|+.++..+.|++.|+++|+|||+|++ ++|||+|++++||+||.+||+.+++ .++.|++||..+ +++.|+||||
T Consensus 138 lq~~l~~l~~~l~d~~~Fk~iY~faf~fa~-e~~qk~Ld~~~ai~~w~ll~~~~~p-ll~~w~~FL~~~-~~~~~~KDtW 214 (260)
T KOG3077|consen 138 LQQRLDFLRSVLKDLEKFKSIYRFAFNFAK-EPGQKSLDLETAISLWKLLFGQTPP-LLDQWIQFLKDS-PNRAISKDTW 214 (260)
T ss_pred HHHHHHHHHHHHccHHHhhHHHHhhhhhcc-CcCcCcCCHHHHHHHHHHHhCCCCc-hHHHHHHHHHhC-cCcccCcccH
Confidence 999999999999999999999999999999 5899999999999999999987775 899999999874 6799999999
Q ss_pred hHHHHHhhhcCCCCCCCCCCCCCchhhHHHHHHHHHhhC
Q 027440 184 LGIFRFCNEISFPDLENYDETQAWPLILDNFVDWLRENH 222 (223)
Q Consensus 184 ~~~l~F~~~v~~~dls~YDe~~AWP~liDeFVe~~r~~~ 222 (223)
+|+|+|++++. +|+|||||+||||+||||||||+|.++
T Consensus 215 ~~~l~Fs~~i~-~dlSnYDeegAWP~liDeFVe~~r~~~ 252 (260)
T KOG3077|consen 215 NLLLDFSKTID-PDLSNYDEEGAWPVLIDEFVEYLRDKQ 252 (260)
T ss_pred HHHHHHHHhcC-ccccCccccccchHHHHHHHHHHHHhc
Confidence 99999999886 999999999999999999999999875
No 2
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=100.00 E-value=1.4e-45 Score=291.77 Aligned_cols=116 Identities=37% Similarity=0.740 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHhC-CChhhHHHHHhHhhhccCccccccccHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCCccCC
Q 027440 101 LSKLKKAISELEKEVR-TPPNFADFYSFAFRYHLTEEKQKNIDIETICELLNLVLGPQFRRQVDLLIDYLKVQSNYKVIN 179 (223)
Q Consensus 101 ~~~lk~~l~~L~~~l~-~~~~Fk~~Y~f~F~f~~~~~~qK~L~~e~Ai~~W~lll~~~~~~~l~~W~~Fl~~~~~~k~Is 179 (223)
|++||++|++|+++|. |+++|++||+|||+|+|+ +|||+|++|+||+||++||+++..++++.|++||+++ ++|+||
T Consensus 1 I~~lk~~l~~l~~~l~~d~~~F~~~Y~f~F~~~~~-~~qr~l~~e~Ai~~W~llf~~~~~~~l~~w~~Fl~~~-~~k~Is 78 (117)
T PF03556_consen 1 IDKLKQKLPELRKELRSDPEYFKKFYRFTFDFARE-EGQRSLPLETAIAYWRLLFSGRFFPLLDSWIEFLEEK-YKKAIS 78 (117)
T ss_dssp HHHHHHCHHHHHHHCCHSHHHHHHHHHHHHHHHS--TT-SSEEHHHHHHHHHHHTTTTSSCCHHHHHHHHHHC-T-SEEE
T ss_pred CHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhCC-cccCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc-CCcCcC
Confidence 6899999999999997 899999999999999995 6899999999999999999998446999999999875 679999
Q ss_pred hhhHhHHHHHhhhcCCCCCCCCCCCCCchhhHHHHHHHHH
Q 027440 180 LDQWLGIFRFCNEISFPDLENYDETQAWPLILDNFVDWLR 219 (223)
Q Consensus 180 kD~W~~~l~F~~~v~~~dls~YDe~~AWP~liDeFVe~~r 219 (223)
||+|+|+++|+++++ +++++|||+||||+||||||||+|
T Consensus 79 kD~W~~~l~F~~~~~-~dls~Yde~~AWP~liDeFVe~~r 117 (117)
T PF03556_consen 79 KDTWNQFLDFFKTVD-EDLSNYDEEGAWPSLIDEFVEWLR 117 (117)
T ss_dssp HHHHHHHHHHHHH-H-CCHCC--TTSSS-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcC-ccccCCCCCCCCcHHHHHHHHHhC
Confidence 999999999999996 999999999999999999999987
No 3
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.61 E-value=0.083 Score=47.43 Aligned_cols=85 Identities=12% Similarity=0.038 Sum_probs=64.2
Q ss_pred hHHHHHhHhhhccCccccccccHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCCccCChhhHhHHHHHhhhcCCCCCCC
Q 027440 121 FADFYSFAFRYHLTEEKQKNIDIETICELLNLVLGPQFRRQVDLLIDYLKVQSNYKVINLDQWLGIFRFCNEISFPDLEN 200 (223)
Q Consensus 121 Fk~~Y~f~F~f~~~~~~qK~L~~e~Ai~~W~lll~~~~~~~l~~W~~Fl~~~~~~k~IskD~W~~~l~F~~~v~~~dls~ 200 (223)
+.-.|...+.|+.+ -|....++.++|-.|.+- ..++. .+..|+ |+..-+.-..+|-|+|++.++|.+++- .|++.
T Consensus 80 ~~i~~dgi~~fc~d-lg~~p~~i~~LvlAwkl~-A~~m~-~Fsr~e-f~~g~~~l~~dS~d~lq~~l~~l~~~l-~d~~~ 154 (260)
T KOG3077|consen 80 NLIGPDGIEKFCED-LGVEPEDISVLVLAWKLG-AATMC-EFSREE-FLKGMTALGCDSIDKLQQRLDFLRSVL-KDLEK 154 (260)
T ss_pred cccChHHHHHHHHH-hCCCchhHHHHHHHHHhc-cchhh-hhhHHH-HHHHHHHcCCCcHHHHHHHHHHHHHHH-ccHHH
Confidence 78889999999985 689999999999999998 76654 243332 332222346899999999999999886 58887
Q ss_pred CCCCCCchhh
Q 027440 201 YDETQAWPLI 210 (223)
Q Consensus 201 YDe~~AWP~l 210 (223)
|++-.+||..
T Consensus 155 Fk~iY~faf~ 164 (260)
T KOG3077|consen 155 FKSIYRFAFN 164 (260)
T ss_pred hhHHHHhhhh
Confidence 7766555543
No 4
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=93.57 E-value=0.42 Score=30.47 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=48.4
Q ss_pred HHHHHHhhcCC--CCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCccccccHHHHHHHH
Q 027440 34 IENFFDKYANG--GIIDSPDGIVTLCKDLELEYTDVRILMLAWYLKAVKLGYFTQDEWETGL 93 (223)
Q Consensus 34 l~~lF~~Y~d~--~~I~~~dGi~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~ 93 (223)
+..+|..|... +.|. .+-+...+..+|..+.+..+-.+...+....-|.++.++|+..+
T Consensus 2 ~~~~f~~~d~~~~g~l~-~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTIS-ADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCc-HHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 56788888644 6788 88999999999988887777778888888888999999998754
No 5
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=93.45 E-value=0.19 Score=33.27 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHHHcCCC-CCCHHHHHHHHHhcCCccccccHHHHHHHHhh
Q 027440 45 GIIDSPDGIVTLCKDLELE-YTDVRILMLAWYLKAVKLGYFTQDEWETGLKT 95 (223)
Q Consensus 45 ~~I~~~dGi~~~~~DLgv~-~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~ 95 (223)
+.|+ .+.+.+.+..+|+. +.+-.+=.|...+-...-|.|+.+||+..|..
T Consensus 3 G~i~-~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 3 GKIT-REEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SEEE-HHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CEEC-HHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 4577 88999999888999 98888999999999999999999999998875
No 6
>PTZ00183 centrin; Provisional
Probab=92.06 E-value=2.8 Score=32.80 Aligned_cols=64 Identities=22% Similarity=0.284 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhcCC--CCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCccccccHHHHHHHHhh
Q 027440 31 AKEIENFFDKYANG--GIIDSPDGIVTLCKDLELEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKT 95 (223)
Q Consensus 31 ~~~l~~lF~~Y~d~--~~I~~~dGi~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~ 95 (223)
.+++.++|..+-.. +.|. .+-+..++..+|..+....+-.+.-.+....-|.|+.++|+..+..
T Consensus 16 ~~~~~~~F~~~D~~~~G~i~-~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 16 KKEIREAFDLFDTDGSGTID-PKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTK 81 (158)
T ss_pred HHHHHHHHHHhCCCCCCccc-HHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 45678888877433 6799 9999999999998877666666666777788899999999998765
No 7
>PTZ00183 centrin; Provisional
Probab=91.67 E-value=1.2 Score=34.90 Aligned_cols=82 Identities=20% Similarity=0.215 Sum_probs=45.5
Q ss_pred cCHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHc--CCCCCCHHHHHHHHHhcCCccccccHHHHHHHHhhcCC-CcHHH
Q 027440 29 AKAKEIENFFDKYANG--GIIDSPDGIVTLCKDL--ELEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKTLQV-NNLSK 103 (223)
Q Consensus 29 ~~~~~l~~lF~~Y~d~--~~I~~~dGi~~~~~DL--gv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~~-ds~~~ 103 (223)
.....+.++|..+-.. +.|+ .+....++... ...+++. +--+...+....-|.++++||...+..+|. -+-..
T Consensus 50 ~~~~~~~~l~~~~d~~~~g~i~-~~eF~~~~~~~~~~~~~~~~-l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~ 127 (158)
T PTZ00183 50 PKKEEIKQMIADVDKDGSGKID-FEEFLDIMTKKLGERDPREE-ILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEE 127 (158)
T ss_pred CCHHHHHHHHHHhCCCCCCcEe-HHHHHHHHHHHhcCCCcHHH-HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHH
Confidence 3456777777777433 5677 66666655432 1122211 212223445555688888888888877663 23444
Q ss_pred HHHHHHHHH
Q 027440 104 LKKAISELE 112 (223)
Q Consensus 104 lk~~l~~L~ 112 (223)
++..+..+.
T Consensus 128 ~~~~~~~~d 136 (158)
T PTZ00183 128 LQEMIDEAD 136 (158)
T ss_pred HHHHHHHhC
Confidence 555554443
No 8
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=91.48 E-value=0.71 Score=34.30 Aligned_cols=67 Identities=13% Similarity=0.181 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhcC---C-CCCCCHHHHHHHHHH-----cCCCCCCHHHHHHHHHhcCCccccccHHHHHHHHhhcCC
Q 027440 31 AKEIENFFDKYAN---G-GIIDSPDGIVTLCKD-----LELEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKTLQV 98 (223)
Q Consensus 31 ~~~l~~lF~~Y~d---~-~~I~~~dGi~~~~~D-----Lgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~~ 98 (223)
-..|...|..|-+ + +.|. .+-+..++.. +|..+....+--+.-.+....-|.|+.++|+..|..+.+
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is-~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLS-RKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeEC-HHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 3567788999954 2 6899 9999988876 678877666666667788888899999999999988665
No 9
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=90.46 E-value=1.3 Score=32.95 Aligned_cols=64 Identities=20% Similarity=0.190 Sum_probs=51.6
Q ss_pred HHHHHHHhhcCC----CCCCCHHHHHHHHHH---cCCCCCCHHHHHHHHHhcCCccccccHHHHHHHHhhcC
Q 027440 33 EIENFFDKYANG----GIIDSPDGIVTLCKD---LELEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKTLQ 97 (223)
Q Consensus 33 ~l~~lF~~Y~d~----~~I~~~dGi~~~~~D---Lgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~ 97 (223)
.|.++|.+|... +.|. .+.+.+++.. +|..+.+-.+--+-..+....-|.|+-+||+.-|..+-
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is-~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLS-KKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHccCCCCCEEC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 466899999862 4899 9999999974 68777666666677777888889999999998887753
No 10
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=90.34 E-value=1.2 Score=29.89 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=44.1
Q ss_pred HHHHHhhcCC--CCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCccccccHHHHHHHHhhcC
Q 027440 35 ENFFDKYANG--GIIDSPDGIVTLCKDLELEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKTLQ 97 (223)
Q Consensus 35 ~~lF~~Y~d~--~~I~~~dGi~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~ 97 (223)
.++|..+-.+ +.|. .+.+.+++..+|++.+.+.- +...+....-|.|+.++|+..|..+.
T Consensus 2 ~~~F~~~D~~~~G~i~-~~el~~~l~~~g~~~~~~~~--i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLIS-GDEARPFLGKSGLPRSVLAQ--IWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCc-HHHHHHHHHHcCCCHHHHHH--HHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 3577777433 6898 99999999999984444333 34556677789999999999987643
No 11
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=89.54 E-value=1.1 Score=33.41 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=48.5
Q ss_pred CHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCccccccHHHHHHHHhhc
Q 027440 30 KAKEIENFFDKYANG--GIIDSPDGIVTLCKDLELEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKTL 96 (223)
Q Consensus 30 ~~~~l~~lF~~Y~d~--~~I~~~dGi~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l 96 (223)
....+.+.|..+-.+ +.|. .+-+.+.+..+|++.+.+.-+. -.+....-|.|+.+||+..|..+
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is-~~el~~~l~~~~~~~~ev~~i~--~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVT-GAQAKPILLKSGLPQTLLAKIW--NLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEe-HHHHHHHHHHcCCCHHHHHHHH--HHhcCCCCCCcCHHHHHHHHHHH
Confidence 345777888888543 6899 9999999999998766555433 34566677999999999988764
No 12
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=88.64 E-value=1.3 Score=32.72 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=47.3
Q ss_pred HHHHHHHHhhcCC----CCCCCHHHHHHHHH-HcCCCCC----CHHHHHHHHHhcCCccccccHHHHHHHHhhcC
Q 027440 32 KEIENFFDKYANG----GIIDSPDGIVTLCK-DLELEYT----DVRILMLAWYLKAVKLGYFTQDEWETGLKTLQ 97 (223)
Q Consensus 32 ~~l~~lF~~Y~d~----~~I~~~dGi~~~~~-DLgv~~e----d~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~ 97 (223)
..|..+|.+|... +.|. .+.+..++. .+|-.+. +-.+=-+.-.+....-|.|+-++|+..+..+.
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is-~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLY-KKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHhccCCCcccCC-HHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 3566899999854 5899 999999997 4543332 34444455566777789999999999988753
No 13
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=87.63 E-value=2 Score=29.13 Aligned_cols=60 Identities=18% Similarity=0.234 Sum_probs=37.5
Q ss_pred HHHHHHHhhcCC--CCCCCHHHHHHHHHHcCCCCCC--H--HHHHHHHHhcCCccccccHHHHHHHH
Q 027440 33 EIENFFDKYANG--GIIDSPDGIVTLCKDLELEYTD--V--RILMLAWYLKAVKLGYFTQDEWETGL 93 (223)
Q Consensus 33 ~l~~lF~~Y~d~--~~I~~~dGi~~~~~DLgv~~ed--~--~~LvLa~~l~a~~~g~itr~eF~~g~ 93 (223)
+|.++|+.|=.+ +.|+ .+-+.+++..++....+ + .+-.+...+-...-|.|+.+||++.|
T Consensus 1 ~l~~~F~~~D~d~~G~i~-~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYIS-KEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEE-HHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCC-HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 366778887433 6787 88888888888876421 1 11122334445556888888887654
No 14
>PTZ00184 calmodulin; Provisional
Probab=87.14 E-value=3 Score=32.01 Aligned_cols=98 Identities=14% Similarity=0.187 Sum_probs=57.1
Q ss_pred cCHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHc-CCCCCCHHHHHHHHHhcCCccccccHHHHHHHHhhcCCC-cHHHH
Q 027440 29 AKAKEIENFFDKYANG--GIIDSPDGIVTLCKDL-ELEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKTLQVN-NLSKL 104 (223)
Q Consensus 29 ~~~~~l~~lF~~Y~d~--~~I~~~dGi~~~~~DL-gv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~~d-s~~~l 104 (223)
.....+.++|..+-.+ +.|+ .+-..+++... ........+-.+...+....-|.+++++|..++..+|.. +-+.+
T Consensus 44 ~~~~~~~~~~~~~d~~~~g~i~-~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~ 122 (149)
T PTZ00184 44 PTEAELQDMINEVDADGNGTID-FPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEV 122 (149)
T ss_pred CCHHHHHHHHHhcCcCCCCcCc-HHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHH
Confidence 3567888898888544 6788 76666655433 222222222333344455566999999999999988864 44455
Q ss_pred HHHHHHHHHHhCCChhhHHHHHh
Q 027440 105 KKAISELEKEVRTPPNFADFYSF 127 (223)
Q Consensus 105 k~~l~~L~~~l~~~~~Fk~~Y~f 127 (223)
+..+..+...-.+.-.|.+|..+
T Consensus 123 ~~~~~~~d~~~~g~i~~~ef~~~ 145 (149)
T PTZ00184 123 DEMIREADVDGDGQINYEEFVKM 145 (149)
T ss_pred HHHHHhcCCCCCCcCcHHHHHHH
Confidence 55555443322233345555543
No 15
>PTZ00184 calmodulin; Provisional
Probab=86.19 E-value=13 Score=28.36 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhcCC--CCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCccccccHHHHHHHHhh
Q 027440 31 AKEIENFFDKYANG--GIIDSPDGIVTLCKDLELEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKT 95 (223)
Q Consensus 31 ~~~l~~lF~~Y~d~--~~I~~~dGi~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~ 95 (223)
.+++.+.|..+-.+ +.|. .+-+..++..+|.++.+..+-.+.-.+....-|.++.++|+..|..
T Consensus 10 ~~~~~~~F~~~D~~~~G~i~-~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 75 (149)
T PTZ00184 10 IAEFKEAFSLFDKDGDGTIT-TKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMAR 75 (149)
T ss_pred HHHHHHHHHHHcCCCCCcCC-HHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHH
Confidence 35677788776322 6899 9999999999999988777777777788888899999999988875
No 16
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=84.84 E-value=6.3 Score=31.57 Aligned_cols=84 Identities=17% Similarity=0.213 Sum_probs=66.2
Q ss_pred CHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCccccccHHHHHHHHhhcCCC------cH
Q 027440 30 KAKEIENFFDKYANG--GIIDSPDGIVTLCKDLELEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKTLQVN------NL 101 (223)
Q Consensus 30 ~~~~l~~lF~~Y~d~--~~I~~~dGi~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~~d------s~ 101 (223)
...++.+.|+.+--. +.|. .+=+...+..||.+|....+-.+...+....-|.|+.++|+.-|...+.. +.
T Consensus 6 ~~~el~~~F~~fD~d~~G~i~-~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~ 84 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGDGKIS-VEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASS 84 (151)
T ss_pred HHHHHHHHHHHHCCCCCCccc-HHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccH
Confidence 346788888888433 7888 99999999999999999999999999999999999999999999886643 23
Q ss_pred HHHHHHHHHHHHH
Q 027440 102 SKLKKAISELEKE 114 (223)
Q Consensus 102 ~~lk~~l~~L~~~ 114 (223)
+.++.+..-++.+
T Consensus 85 ~el~eaF~~fD~d 97 (151)
T KOG0027|consen 85 EELKEAFRVFDKD 97 (151)
T ss_pred HHHHHHHHHHccC
Confidence 3555554444433
No 17
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=84.31 E-value=5.2 Score=28.91 Aligned_cols=64 Identities=19% Similarity=0.184 Sum_probs=47.2
Q ss_pred HHHHHHHHhhcC--C--CCCCCHHHHHHHHHH-cCCCC----CCHHHHHHHHHhcCCccccccHHHHHHHHhhc
Q 027440 32 KEIENFFDKYAN--G--GIIDSPDGIVTLCKD-LELEY----TDVRILMLAWYLKAVKLGYFTQDEWETGLKTL 96 (223)
Q Consensus 32 ~~l~~lF~~Y~d--~--~~I~~~dGi~~~~~D-Lgv~~----ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l 96 (223)
+.+.+.|..|-. + +.|. .+.+.+++.. +|..+ ....+=-+.-.+....-|.|+-++|+..|..+
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is-~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLS-KKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCc-HHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 456677888866 3 6899 9999999976 56433 24444445556677888999999999988765
No 18
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=80.38 E-value=5.6 Score=38.22 Aligned_cols=81 Identities=20% Similarity=0.232 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhcCC--CCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCccccccHHHHHHHHhhcCCCcHHHHHHHH
Q 027440 31 AKEIENFFDKYANG--GIIDSPDGIVTLCKDLELEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKTLQVNNLSKLKKAI 108 (223)
Q Consensus 31 ~~~l~~lF~~Y~d~--~~I~~~dGi~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~~ds~~~lk~~l 108 (223)
+.+|-.+|.+-.-. +.|+ +..|.++|.|||+++.|...--+-..+--..-+.|..+||.+-+.-.- .+.|..-+
T Consensus 81 E~~l~~~F~~iD~~hdG~i~-~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p---~s~i~di~ 156 (463)
T KOG0036|consen 81 ELELYRIFQSIDLEHDGKID-PNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP---ESDLEDIY 156 (463)
T ss_pred HHHHHHHHhhhccccCCccC-HHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC---hhHHHHHH
Confidence 34455566555322 6899 999999999999999999988888888888888999999998665543 44555555
Q ss_pred HHHHHHh
Q 027440 109 SELEKEV 115 (223)
Q Consensus 109 ~~L~~~l 115 (223)
..++..+
T Consensus 157 ~~W~h~~ 163 (463)
T KOG0036|consen 157 DFWRHVL 163 (463)
T ss_pred Hhhhhhe
Confidence 5555443
No 19
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=80.28 E-value=8.6 Score=32.22 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=49.7
Q ss_pred CccCHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCccccccHHHHHHHHhh
Q 027440 27 GKAKAKEIENFFDKYANG--GIIDSPDGIVTLCKDLELEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKT 95 (223)
Q Consensus 27 ~~~~~~~l~~lF~~Y~d~--~~I~~~dGi~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~ 95 (223)
....+.+|...|+-|=.+ +.|. .+-+.+.++-||-...+-++=-|.-.+.-..-|.|+.++|++.+..
T Consensus 87 ~~~~~Eel~~aF~~fD~d~dG~Is-~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 87 RGDKEEELREAFKLFDKDHDGYIS-IGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred cCCcHHHHHHHHHHhCCCCCceec-HHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 334577788888877544 6787 8888888888888877777666666666666788888888887754
No 20
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=80.22 E-value=3.6 Score=26.91 Aligned_cols=47 Identities=19% Similarity=0.373 Sum_probs=31.4
Q ss_pred cccccHHHHHHHHhhcCCC--cHHHHHHHHHHHHHHhCCChhhHHHHHh
Q 027440 81 LGYFTQDEWETGLKTLQVN--NLSKLKKAISELEKEVRTPPNFADFYSF 127 (223)
Q Consensus 81 ~g~itr~eF~~g~~~l~~d--s~~~lk~~l~~L~~~l~~~~~Fk~~Y~f 127 (223)
-|.|++++|...|..+|.. |.+.+...+...+.+=..--.|.+|..+
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~ 50 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISM 50 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHH
Confidence 4899999999999887765 5555666555555444444456665543
No 21
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=79.62 E-value=9.2 Score=31.40 Aligned_cols=96 Identities=18% Similarity=0.265 Sum_probs=59.1
Q ss_pred HHHHHHhhc----CC-CCCCCHHHHHHHHHHcCCCC---CCHHHHHHHHHhcCCccccccHHHHHHHHhhc----CCC--
Q 027440 34 IENFFDKYA----NG-GIIDSPDGIVTLCKDLELEY---TDVRILMLAWYLKAVKLGYFTQDEWETGLKTL----QVN-- 99 (223)
Q Consensus 34 l~~lF~~Y~----d~-~~I~~~dGi~~~~~DLgv~~---ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l----~~d-- 99 (223)
|+++|..|+ .. ..|. ...+.++|.|.||=. ....+=++-.++++..-..|+-++|++.+..+ +++
T Consensus 1 L~~~F~~f~~fG~~~~~~m~-~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~~~~ 79 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMD-SKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGKDKS 79 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEE-HHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSCCCT
T ss_pred CHHHHHHHHHhcCCcccccc-HHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhcccc
Confidence 688999994 33 6788 889999999999943 33334455566777776779999999998775 343
Q ss_pred cHHHHHHHHH-----H--------HHHHhCCChhhHHHHHhHhh
Q 027440 100 NLSKLKKAIS-----E--------LEKEVRTPPNFADFYSFAFR 130 (223)
Q Consensus 100 s~~~lk~~l~-----~--------L~~~l~~~~~Fk~~Y~f~F~ 130 (223)
+.+++...|- . ..+.|.|+..|.-+|+--|+
T Consensus 80 ~~~~~~~kl~~~~~P~~~g~~~~~~v~rltD~s~YTG~hk~rf~ 123 (154)
T PF05517_consen 80 SAEELKEKLTAGGGPSASGATKAGAVDRLTDKSTYTGSHKERFD 123 (154)
T ss_dssp HHHHHHHHHHTT--SSSSS-TTS------SSSS-STTS---SS-
T ss_pred cHHHHHHHHHccCccccccccccccccccCCCCccchhhhhcCC
Confidence 6777777761 1 12223566667777766666
No 22
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=78.79 E-value=12 Score=28.05 Aligned_cols=64 Identities=14% Similarity=0.073 Sum_probs=46.9
Q ss_pred HHHHHHHHhhcC-C--CCCCCHHHHHHHHHH-cCCCCCC-HHHHHHHHHhcCCccccccHHHHHHHHhhc
Q 027440 32 KEIENFFDKYAN-G--GIIDSPDGIVTLCKD-LELEYTD-VRILMLAWYLKAVKLGYFTQDEWETGLKTL 96 (223)
Q Consensus 32 ~~l~~lF~~Y~d-~--~~I~~~dGi~~~~~D-Lgv~~ed-~~~LvLa~~l~a~~~g~itr~eF~~g~~~l 96 (223)
..|.+.|..|.. + +.|. .+.+..++.. ||-..++ -.+=-+.-.+....=|.|+-+||+.-|..+
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~-~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLT-ASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeEC-HHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 456778888876 3 6788 9999999988 8844444 444444455667777999999998887765
No 23
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=78.42 E-value=14 Score=27.04 Aligned_cols=66 Identities=12% Similarity=0.056 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhc-CC--C-CCCCHHHHHHHHHH-cCC----CCCCHHHHHHHHHhcCCccccccHHHHHHHHhhcC
Q 027440 31 AKEIENFFDKYA-NG--G-IIDSPDGIVTLCKD-LEL----EYTDVRILMLAWYLKAVKLGYFTQDEWETGLKTLQ 97 (223)
Q Consensus 31 ~~~l~~lF~~Y~-d~--~-~I~~~dGi~~~~~D-Lgv----~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~ 97 (223)
...|.+.|..|- .. + .|. .+-+.+++.. +|. .|....+=-+...+....-|.|+-++|+.-+..+.
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is-~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLS-KKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeEC-HHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 356888999995 22 5 499 9999999975 553 45555555566667888889999999998877653
No 24
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=78.34 E-value=25 Score=28.00 Aligned_cols=86 Identities=21% Similarity=0.261 Sum_probs=62.5
Q ss_pred CCccCHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHcCCCCCC----HHHHHHHHH-hcCCccccccHHHHHHHHhhcCC
Q 027440 26 SGKAKAKEIENFFDKYANG--GIIDSPDGIVTLCKDLELEYTD----VRILMLAWY-LKAVKLGYFTQDEWETGLKTLQV 98 (223)
Q Consensus 26 ~~~~~~~~l~~lF~~Y~d~--~~I~~~dGi~~~~~DLgv~~ed----~~~LvLa~~-l~a~~~g~itr~eF~~g~~~l~~ 98 (223)
...+...++..+++++-.+ +.|. .+.+..++...+..... ...+.=|+. +-....|.||.+|+..-|..+|-
T Consensus 38 g~~~t~~el~~~~~~~D~dg~g~I~-~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~ 116 (151)
T KOG0027|consen 38 GQNPTEEELRDLIKEIDLDGDGTID-FEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGE 116 (151)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCeEc-HHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCC
Confidence 3456788999999999754 6899 99999999988887654 335555554 46667899999999999999984
Q ss_pred -CcHHHHHHHHHHHH
Q 027440 99 -NNLSKLKKAISELE 112 (223)
Q Consensus 99 -ds~~~lk~~l~~L~ 112 (223)
.|.+.++..+....
T Consensus 117 ~~~~~e~~~mi~~~d 131 (151)
T KOG0027|consen 117 KLTDEECKEMIREVD 131 (151)
T ss_pred cCCHHHHHHHHHhcC
Confidence 34444444444433
No 25
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=77.67 E-value=13 Score=27.58 Aligned_cols=64 Identities=14% Similarity=0.126 Sum_probs=48.9
Q ss_pred HHHHHHHHhhc--CC-C-CCCCHHHHHHHHHH-----cCCCCCCHHHHHHHHHhcCCccccccHHHHHHHHhhc
Q 027440 32 KEIENFFDKYA--NG-G-IIDSPDGIVTLCKD-----LELEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKTL 96 (223)
Q Consensus 32 ~~l~~lF~~Y~--d~-~-~I~~~dGi~~~~~D-----Lgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l 96 (223)
..|.+.|..|. +. + .|. .+-+..++.. +|-.++.-.+=-+.-.+....-|.|+-++|+.-+..+
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~-~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLK-KSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhcccCCCcCEEC-HHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 46778999995 33 5 599 9999999999 9977654444444456688888999999999877654
No 26
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=77.37 E-value=4.3 Score=28.55 Aligned_cols=55 Identities=7% Similarity=0.070 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHcCCCCCCHHHHHHHHHh--cCCccccccHHHHHHHHhhcCCCcHHHHH
Q 027440 47 IDSPDGIVTLCKDLELEYTDVRILMLAWYL--KAVKLGYFTQDEWETGLKTLQVNNLSKLK 105 (223)
Q Consensus 47 I~~~dGi~~~~~DLgv~~ed~~~LvLa~~l--~a~~~g~itr~eF~~g~~~l~~ds~~~lk 105 (223)
.. .+-|..++++.|.+++ ++...+-+-+ +..+++.+ +.-++.|++-|+.|+++.+
T Consensus 16 ~e-~~~i~~~~~~~~~~~e-vI~~ai~~a~~~~~~~~~Yi--~~Il~~W~~~gi~T~e~~~ 72 (73)
T TIGR01446 16 FE-MEDLKYWLDEFGNSPE-LIKEALKEAVSNNKANYKYI--DAILNNWKNNGIKTVEDVE 72 (73)
T ss_pred HH-HHHHHHHHHHhCCCHH-HHHHHHHHHHHcCCCCHHHH--HHHHHHHHHcCCCCHHHHh
Confidence 44 6788899999998754 5555555544 34444433 3567779999999999875
No 27
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=76.60 E-value=30 Score=29.30 Aligned_cols=101 Identities=18% Similarity=0.228 Sum_probs=72.9
Q ss_pred CHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCccccccHHHHHHHHhh-cC-CCcHHHHH
Q 027440 30 KAKEIENFFDKYANG--GIIDSPDGIVTLCKDLELEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKT-LQ-VNNLSKLK 105 (223)
Q Consensus 30 ~~~~l~~lF~~Y~d~--~~I~~~dGi~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~-l~-~ds~~~lk 105 (223)
..++++.-|+-+-.. +.|+ .+++--=.-.||.+|..-.++-|.--+....-|.|+-++|+..|.. ++ -||.+.++
T Consensus 31 q~q~i~e~f~lfd~~~~g~iD-~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~ 109 (172)
T KOG0028|consen 31 QKQEIKEAFELFDPDMAGKID-VEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIK 109 (172)
T ss_pred HHhhHHHHHHhhccCCCCccc-HHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHH
Confidence 345677777666433 7899 9998666678999999999998888888888899999999999866 33 46889888
Q ss_pred HHHHHHHHHhCCChhhHHHHHhHhhh
Q 027440 106 KAISELEKEVRTPPNFADFYSFAFRY 131 (223)
Q Consensus 106 ~~l~~L~~~l~~~~~Fk~~Y~f~F~f 131 (223)
..++..+..=+..-.++.|-+-++..
T Consensus 110 ~afrl~D~D~~Gkis~~~lkrvakeL 135 (172)
T KOG0028|consen 110 KAFRLFDDDKTGKISQRNLKRVAKEL 135 (172)
T ss_pred HHHHcccccCCCCcCHHHHHHHHHHh
Confidence 88775554433333344444444443
No 28
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=75.63 E-value=16 Score=27.20 Aligned_cols=65 Identities=12% Similarity=0.074 Sum_probs=46.6
Q ss_pred HHHHHHHHhhcCC----CCCCCHHHHHHHHHHc-----CCCCCCHHHHHHHHHhcCCccccccHHHHHHHHhhcC
Q 027440 32 KEIENFFDKYANG----GIIDSPDGIVTLCKDL-----ELEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKTLQ 97 (223)
Q Consensus 32 ~~l~~lF~~Y~d~----~~I~~~dGi~~~~~DL-----gv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~ 97 (223)
..|.++|.+|.+. +.|. .+.+..+++.- +-..++..+--+.-.+....=|.|+-+||+.-+..+-
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls-~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLS-KTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHhccCCCcCeEC-HHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 4677899998754 2688 99999999765 3223333444455566777779999999998887764
No 29
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=74.18 E-value=20 Score=26.60 Aligned_cols=64 Identities=13% Similarity=0.117 Sum_probs=47.0
Q ss_pred HHHHHHHhhcCC---C-CCCCHHHHHHHHHH-c----CCCCCCHHHHHHHHHhcCCccccccHHHHHHHHhhcC
Q 027440 33 EIENFFDKYANG---G-IIDSPDGIVTLCKD-L----ELEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKTLQ 97 (223)
Q Consensus 33 ~l~~lF~~Y~d~---~-~I~~~dGi~~~~~D-L----gv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~ 97 (223)
.|.+.|.+|.+. + .|. .+-+..++.. + +-.+.+-.+=-+...+....-|.|+-+||+.-+..+-
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is-~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLS-KGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHccCCCCCEEC-HHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 445569999853 3 499 9999999976 3 3333444555566777887889999999999888764
No 30
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=73.54 E-value=28 Score=29.15 Aligned_cols=84 Identities=15% Similarity=0.219 Sum_probs=65.6
Q ss_pred CHHHHHHHHHhhc---CC--CCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCccccccHHHHHHHHhhcC--CCcHH
Q 027440 30 KAKEIENFFDKYA---NG--GIIDSPDGIVTLCKDLELEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKTLQ--VNNLS 102 (223)
Q Consensus 30 ~~~~l~~lF~~Y~---d~--~~I~~~dGi~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~--~ds~~ 102 (223)
...+++++.+.|+ -+ +.|. -+-+......||.+|.+..+.-|.--+.+ .-|.++-.+|+..|...- -++-+
T Consensus 15 t~~qi~~lkeaF~l~D~d~~G~I~-~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~E 92 (160)
T COG5126 15 TEEQIQELKEAFQLFDRDSDGLID-RNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEE 92 (160)
T ss_pred CHHHHHHHHHHHHHhCcCCCCCCc-HHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHH
Confidence 4455555555544 22 7899 99999999999999999999999999998 778999999999997743 35678
Q ss_pred HHHHHHHHHHHHh
Q 027440 103 KLKKAISELEKEV 115 (223)
Q Consensus 103 ~lk~~l~~L~~~l 115 (223)
+|+.+..-.+.+=
T Consensus 93 el~~aF~~fD~d~ 105 (160)
T COG5126 93 ELREAFKLFDKDH 105 (160)
T ss_pred HHHHHHHHhCCCC
Confidence 8887777666553
No 31
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=72.83 E-value=2.7 Score=25.04 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=15.3
Q ss_pred cCCccccccHHHHHHHHhhc
Q 027440 77 KAVKLGYFTQDEWETGLKTL 96 (223)
Q Consensus 77 ~a~~~g~itr~eF~~g~~~l 96 (223)
-...=|.|+.+||+.+|++|
T Consensus 10 D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 10 DKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp STTSSSEEEHHHHHHHHHHT
T ss_pred CCCCCCcCCHHHHHHHHHhC
Confidence 34455899999999988765
No 32
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=71.26 E-value=9.8 Score=27.28 Aligned_cols=62 Identities=18% Similarity=0.282 Sum_probs=42.3
Q ss_pred HHHHHHHhhcCC-CCCCCHHHHHHHHHHc----CCCCCCHHHHHHHHHh--cCCccccccHHHHHHHHhh
Q 027440 33 EIENFFDKYANG-GIIDSPDGIVTLCKDL----ELEYTDVRILMLAWYL--KAVKLGYFTQDEWETGLKT 95 (223)
Q Consensus 33 ~l~~lF~~Y~d~-~~I~~~dGi~~~~~DL----gv~~ed~~~LvLa~~l--~a~~~g~itr~eF~~g~~~ 95 (223)
+|..+|.+|++. ..|. ++++.+|+.+= .++++.+.-++--+.- .....+.+|.++|++-|..
T Consensus 1 ei~~if~~ys~~~~~mt-~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSSDKEYMT-AEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCTTSSSEE-HHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhCCCCcCC-HHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 478999999885 6888 99999999543 3344445444433321 1224588999999987744
No 33
>PF14658 EF-hand_9: EF-hand domain
Probab=70.69 E-value=12 Score=26.96 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=45.5
Q ss_pred CCCCCHHHHHHHHHHcCC-CCCCHHHHHHHHHhcCCcc-ccccHHHHHHHHhh
Q 027440 45 GIIDSPDGIVTLCKDLEL-EYTDVRILMLAWYLKAVKL-GYFTQDEWETGLKT 95 (223)
Q Consensus 45 ~~I~~~dGi~~~~~DLgv-~~ed~~~LvLa~~l~a~~~-g~itr~eF~~g~~~ 95 (223)
+.|- +.-|..|+..+|- +|++..+=-|+-.+--..- |.+.++.|+.-|+.
T Consensus 13 G~V~-v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 13 GRVP-VSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred ceEe-HHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 5677 8899999999999 9999999999999988888 99999999998875
No 34
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=67.16 E-value=41 Score=27.94 Aligned_cols=85 Identities=14% Similarity=0.229 Sum_probs=55.2
Q ss_pred HHHHHHHHhhcCC--CCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCcc--cccc-------------------HHH
Q 027440 32 KEIENFFDKYANG--GIIDSPDGIVTLCKDLELEYTDVRILMLAWYLKAVKL--GYFT-------------------QDE 88 (223)
Q Consensus 32 ~~l~~lF~~Y~d~--~~I~~~dGi~~~~~DLgv~~ed~~~LvLa~~l~a~~~--g~it-------------------r~e 88 (223)
.++.++|+-|-.. +.|+ ...+---+..||.+|.+..++-..-......| -.++ -++
T Consensus 11 ~e~ke~F~lfD~~gD~ki~-~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~ed 89 (152)
T KOG0030|consen 11 EEFKEAFLLFDRTGDGKIS-GSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYED 89 (152)
T ss_pred HHHHHHHHHHhccCccccc-HHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHH
Confidence 5666666666332 6898 88888889999999998887766665555532 3444 455
Q ss_pred HHHHHhhcCC-----CcHHHHHHHHHHHHHHhCC
Q 027440 89 WETGLKTLQV-----NNLSKLKKAISELEKEVRT 117 (223)
Q Consensus 89 F~~g~~~l~~-----ds~~~lk~~l~~L~~~l~~ 117 (223)
|++|++...- =.-..||..|.+|-..|.+
T Consensus 90 fvegLrvFDkeg~G~i~~aeLRhvLttlGekl~e 123 (152)
T KOG0030|consen 90 FVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTE 123 (152)
T ss_pred HHHHHHhhcccCCcceeHHHHHHHHHHHHhhccH
Confidence 5555544321 2346777777777766654
No 35
>PLN02964 phosphatidylserine decarboxylase
Probab=57.64 E-value=67 Score=32.63 Aligned_cols=80 Identities=8% Similarity=0.015 Sum_probs=53.1
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHcC-CCCCCHH---HHHHHHHhcCCccccccHHHHHHHHhhcCC-CcHHHHHH
Q 027440 32 KEIENFFDKYANGGIIDSPDGIVTLCKDLE-LEYTDVR---ILMLAWYLKAVKLGYFTQDEWETGLKTLQV-NNLSKLKK 106 (223)
Q Consensus 32 ~~l~~lF~~Y~d~~~I~~~dGi~~~~~DLg-v~~ed~~---~LvLa~~l~a~~~g~itr~eF~~g~~~l~~-ds~~~lk~ 106 (223)
.++.+.|+.+-. +.-| .. +...+..|| ++|++.. +--+...+....-|.|+.+||+..|..++. .+-++++.
T Consensus 143 ~elkeaF~lfD~-dgdG-~i-Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~e 219 (644)
T PLN02964 143 ESACESFDLLDP-SSSN-KV-VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEE 219 (644)
T ss_pred HHHHHHHHHHCC-CCCC-cC-HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHH
Confidence 445556666632 2222 11 566788999 5887775 333334456667799999999999998874 56667777
Q ss_pred HHHHHHHH
Q 027440 107 AISELEKE 114 (223)
Q Consensus 107 ~l~~L~~~ 114 (223)
....++.+
T Consensus 220 aFk~fDkD 227 (644)
T PLN02964 220 LFKAADLN 227 (644)
T ss_pred HHHHhCCC
Confidence 77766544
No 36
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=56.71 E-value=28 Score=23.00 Aligned_cols=33 Identities=21% Similarity=0.073 Sum_probs=23.0
Q ss_pred hcCCccccccHHHHHHHHhhcCCCcHHHHHHHHH
Q 027440 76 LKAVKLGYFTQDEWETGLKTLQVNNLSKLKKAIS 109 (223)
Q Consensus 76 l~a~~~g~itr~eF~~g~~~l~~ds~~~lk~~l~ 109 (223)
+....-|.|+.+|+...+..+|. +-+.++..+.
T Consensus 8 ~D~~~~G~i~~~el~~~l~~~g~-~~~~~~~i~~ 40 (67)
T cd00052 8 LDPDGDGLISGDEARPFLGKSGL-PRSVLAQIWD 40 (67)
T ss_pred hCCCCCCcCcHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 34455699999999999988886 4444444443
No 37
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=55.71 E-value=24 Score=26.04 Aligned_cols=70 Identities=10% Similarity=-0.078 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHh-cCCccccccHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhCCChhhHHHHHhHhhhc
Q 027440 62 LEYTDVRILMLAWYL-KAVKLGYFTQDEWETGLKTLQVNNLSKLKKAISELEKEVRTPPNFADFYSFAFRYH 132 (223)
Q Consensus 62 v~~ed~~~LvLa~~l-~a~~~g~itr~eF~~g~~~l~~ds~~~lk~~l~~L~~~l~~~~~Fk~~Y~f~F~f~ 132 (223)
++++++..+--+... -...-|.|+.+++...|+.+|+. -+.++..+.....+-.+.-.|.+|+...-.-+
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~-~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~ 74 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLP-QTLLAKIWNLADIDNDGELDKDEFALAMHLIY 74 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCC-HHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHH
Confidence 445555555555544 34456999999999999998863 34455444433322222334555555444333
No 38
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=52.69 E-value=28 Score=33.88 Aligned_cols=83 Identities=14% Similarity=0.224 Sum_probs=61.2
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCccccccHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhCC------C
Q 027440 45 GIIDSPDGIVTLCKDLELEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKTLQVNNLSKLKKAISELEKEVRT------P 118 (223)
Q Consensus 45 ~~I~~~dGi~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~~ds~~~lk~~l~~L~~~l~~------~ 118 (223)
.... +|-..+|.++|..++-.++..-.+. ..-|.||..+|-.-+-.+-..+.++....+.++..+..+ -
T Consensus 301 ~kLs-~deF~~F~e~Lq~Eil~lEF~~~~~----~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~gISl 375 (489)
T KOG2643|consen 301 GKLS-IDEFLKFQENLQEEILELEFERFDK----GDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGKGISL 375 (489)
T ss_pred cccc-HHHHHHHHHHHHHHHHHHHHHHhCc----ccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCCCcCH
Confidence 4566 8999999999987654444443332 223899999999998887777777777788888888754 2
Q ss_pred hhhHHHHHhHhhhc
Q 027440 119 PNFADFYSFAFRYH 132 (223)
Q Consensus 119 ~~Fk~~Y~f~F~f~ 132 (223)
+.|+.|++|..+.+
T Consensus 376 ~Ef~~Ff~Fl~~l~ 389 (489)
T KOG2643|consen 376 QEFKAFFRFLNNLN 389 (489)
T ss_pred HHHHHHHHHHhhhh
Confidence 57888888876543
No 39
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=51.85 E-value=1.1e+02 Score=29.70 Aligned_cols=86 Identities=15% Similarity=0.137 Sum_probs=68.9
Q ss_pred HHHHHHHHHhhcCC--CCCCCHHHHHHHHHHcCCC-CCCHHHHHHHHHhcCCccccccHHHHHHHHhhc-----------
Q 027440 31 AKEIENFFDKYANG--GIIDSPDGIVTLCKDLELE-YTDVRILMLAWYLKAVKLGYFTQDEWETGLKTL----------- 96 (223)
Q Consensus 31 ~~~l~~lF~~Y~d~--~~I~~~dGi~~~~~DLgv~-~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l----------- 96 (223)
+.++..+|+.+-.. +.++ ++.+.+-+..|++. |..-..=.|...+.+.+-|...-+||.+-+.+-
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d-~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~i 91 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVD-LDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQSI 91 (463)
T ss_pred HHHHHHHHHHhccCCCCcee-HHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhhh
Confidence 45677899999764 6799 99999999999999 888788888899999999999999999887542
Q ss_pred -----CCCcHHHHHHHHHHHHHHhCC
Q 027440 97 -----QVNNLSKLKKAISELEKEVRT 117 (223)
Q Consensus 97 -----~~ds~~~lk~~l~~L~~~l~~ 117 (223)
|+-.+..+..+|.++-.+|.|
T Consensus 92 D~~hdG~i~~~Ei~~~l~~~gi~l~d 117 (463)
T KOG0036|consen 92 DLEHDGKIDPNEIWRYLKDLGIQLSD 117 (463)
T ss_pred ccccCCccCHHHHHHHHHHhCCccCH
Confidence 334566777777776666554
No 40
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=51.03 E-value=1.3e+02 Score=24.29 Aligned_cols=91 Identities=19% Similarity=0.250 Sum_probs=50.5
Q ss_pred HHHHHhhcCC--CCCCCHHHHHHHHHHcCCCCCCHH--HHHHHHHhcCC--------------------c--cccccHHH
Q 027440 35 ENFFDKYANG--GIIDSPDGIVTLCKDLELEYTDVR--ILMLAWYLKAV--------------------K--LGYFTQDE 88 (223)
Q Consensus 35 ~~lF~~Y~d~--~~I~~~dGi~~~~~DLgv~~ed~~--~LvLa~~l~a~--------------------~--~g~itr~e 88 (223)
+++-++--++ ...+ .++++.+|+-++-+++.+. +-.|.-+++.+ . .-+|...+
T Consensus 3 ~~~iekAT~~~l~~~d-w~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~ 81 (139)
T cd03567 3 EAWLNKATNPSNREED-WEAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFR 81 (139)
T ss_pred HHHHHHHcCccCCCCC-HHHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHH
Confidence 3444444444 3345 6677788877777766532 22233333222 2 25889999
Q ss_pred HHHHHhhcCC------CcHHHHHHHH----HHHHHHhCCChhhHHHHH
Q 027440 89 WETGLKTLQV------NNLSKLKKAI----SELEKEVRTPPNFADFYS 126 (223)
Q Consensus 89 F~~g~~~l~~------ds~~~lk~~l----~~L~~~l~~~~~Fk~~Y~ 126 (223)
|++-+.++-- .+-...|.++ ..|...+.+...|++.|+
T Consensus 82 Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~~~~~Y~ 129 (139)
T cd03567 82 FLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPHEPKIKEAYD 129 (139)
T ss_pred HHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 9998877532 2445555554 445555544444666664
No 41
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=49.83 E-value=89 Score=26.52 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhcCC--CCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCccccccHHHHHHHHhh
Q 027440 31 AKEIENFFDKYANG--GIIDSPDGIVTLCKDLELEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKT 95 (223)
Q Consensus 31 ~~~l~~lF~~Y~d~--~~I~~~dGi~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~ 95 (223)
..+|...|.-+.++ +.|. +.-+-+.+..||=++.|-.+--...-..--.-|+|+.+||+..|+.
T Consensus 105 ~eEi~~afrl~D~D~~Gkis-~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKIS-QRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHHHHcccccCCCCcC-HHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 33444444444433 4565 6666666666666666655555544444445566666666665543
No 42
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=48.22 E-value=1.1e+02 Score=23.99 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=43.9
Q ss_pred CHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCccccccHHHHHHHH
Q 027440 30 KAKEIENFFDKYANG--GIIDSPDGIVTLCKDLELEYTDVRILMLAWYLKAVKLGYFTQDEWETGL 93 (223)
Q Consensus 30 ~~~~l~~lF~~Y~d~--~~I~~~dGi~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~ 93 (223)
...+|.-.|.++=.+ +.|+ .+=+..++ +.+....+--+...+.+..=|.||.+||..++
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls-~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLS-HHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCC-HHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 456788899999323 6788 88888776 44444444556667777888999999999988
No 43
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=47.52 E-value=47 Score=24.74 Aligned_cols=68 Identities=15% Similarity=0.269 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCC--ccccccHHHHHHHHhh-cC--CCcHHHHHHHHHHHHHHhCCChhhHHHHHhHhhhccC
Q 027440 67 VRILMLAWYLKAV--KLGYFTQDEWETGLKT-LQ--VNNLSKLKKAISELEKEVRTPPNFADFYSFAFRYHLT 134 (223)
Q Consensus 67 ~~~LvLa~~l~a~--~~g~itr~eF~~g~~~-l~--~ds~~~lk~~l~~L~~~l~~~~~Fk~~Y~f~F~f~~~ 134 (223)
+..|+-+...=+. .-|.|+++|+..-|+. +| +...+.++..+..++.+=...-.|.+|-......+..
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~ 79 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKA 79 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHH
Confidence 4556666666554 5689999999999998 77 2222444444444443333455688887776666553
No 44
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=47.42 E-value=23 Score=20.65 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=6.8
Q ss_pred cccccHHHHHHHHh
Q 027440 81 LGYFTQDEWETGLK 94 (223)
Q Consensus 81 ~g~itr~eF~~g~~ 94 (223)
-|.|+.+||...++
T Consensus 14 dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 14 DGFIDFEELRAILR 27 (31)
T ss_dssp SSEEEHHHHHHHHH
T ss_pred CCcCcHHHHHHHHH
Confidence 34455555555444
No 45
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=46.93 E-value=41 Score=25.94 Aligned_cols=63 Identities=14% Similarity=0.240 Sum_probs=46.7
Q ss_pred CHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHh-cCCccccccHHHHHHHHhhc
Q 027440 30 KAKEIENFFDKYANG-GIIDSPDGIVTLCKDLELEYTDVRILMLAWYL-KAVKLGYFTQDEWETGLKTL 96 (223)
Q Consensus 30 ~~~~l~~lF~~Y~d~-~~I~~~dGi~~~~~DLgv~~ed~~~LvLa~~l-~a~~~g~itr~eF~~g~~~l 96 (223)
...+..++|+..... +.|+ .+....++..-|++.+.+ -=.|-| -...-|..+++||+-+|+-+
T Consensus 8 e~~~y~~~F~~l~~~~g~is-g~~a~~~f~~S~L~~~~L---~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 8 EKQKYDQIFQSLDPQDGKIS-GDQAREFFMKSGLPRDVL---AQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHHHCTSSSTTEEE-HHHHHHHHHHTTSSHHHH---HHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCeEe-HHHHHHHHHHcCCCHHHH---HHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 456677899887543 6788 888899999999987543 333444 55567999999999999864
No 46
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=42.08 E-value=1.5e+02 Score=25.21 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=44.3
Q ss_pred CCCccCHHHHHHHHHhhcCC--CCCCCHHHHHHHHHH--cCCCC----CCHHHHHHHHHhcCCccccccHHH
Q 027440 25 RSGKAKAKEIENFFDKYANG--GIIDSPDGIVTLCKD--LELEY----TDVRILMLAWYLKAVKLGYFTQDE 88 (223)
Q Consensus 25 ~~~~~~~~~l~~lF~~Y~d~--~~I~~~dGi~~~~~D--Lgv~~----ed~~~LvLa~~l~a~~~g~itr~e 88 (223)
+..+-.+++.+++|.+|... +.+. ..-+.++... .-.|| ....-..++|.|-.+.-|..+||.
T Consensus 89 ~eGrFvp~kFe~iF~kya~~~~d~LT-~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~~d~dG~l~Ke~ 159 (174)
T PF05042_consen 89 TEGRFVPQKFEEIFSKYAKTGPDALT-LRELWRMLKGNRNANDPFGWFAAFFEWGALYILAKDKDGFLSKED 159 (174)
T ss_pred cCCcCCHHHHHHHHHHhCCCCCCCcC-HHHHHHHHHhccccCCcchhhhhhhHHHHHHHHHcCcCCcEeHHH
Confidence 34555889999999999863 7777 7777777765 22232 224456677788777888887776
No 47
>PF01314 AFOR_C: Aldehyde ferredoxin oxidoreductase, domains 2 & 3; InterPro: IPR001203 Enzymes of the aldehyde ferredoxin oxidoreductase (AOR) family [] contain a tungsten cofactor and an 4Fe4S cluster and catalyse the interconversion of aldehydes to carboxylates []. This family includes AOR, formaldehyde ferredoxin oxidoreductase (FOR), glyceraldehyde-3-phosphate ferredoxin oxidoreductase (GAPOR), all isolated from hyperthermophilic archea []; carboxylic acid reductase found in clostridia []; and hydroxycarboxylate viologen oxidoreductase from Proteus vulgaris, the sole member of the AOR family containing molybdenum []. GAPOR may be involved in glycolysis [], but the functions of the other proteins are not yet clear. AOR has been proposed to be the primary enzyme responsible for oxidising the aldehydes that are produced by the 2-keto acid oxidoreductases []. This entry represents the C-terminal region of these enzymes, containing the alpha-helical structural domains 2 and 3 [, ].; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0016625 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1B25_C 1B4N_C 1AOR_B.
Probab=40.53 E-value=12 Score=35.11 Aligned_cols=36 Identities=22% Similarity=0.453 Sum_probs=30.1
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHhcCCccccccHHHH
Q 027440 53 IVTLCKDLELEYTDVRILMLAWYLKAVKLGYFTQDEW 89 (223)
Q Consensus 53 i~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF 89 (223)
+..+|.+||+|.-+.-. +|||.+.|-.-|.|++++.
T Consensus 116 ~~~lcd~~GlDtis~G~-~ia~~me~~e~G~i~~~d~ 151 (382)
T PF01314_consen 116 ANDLCDDYGLDTISAGN-TIAWAMELYEKGLITKEDT 151 (382)
T ss_dssp HHHHHHHHTB-HHHHHH-HHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHhCCcHHHHHH-HHHHHHHHHHCCCCChhhc
Confidence 45789999999866554 8999999999999999887
No 48
>PLN02223 phosphoinositide phospholipase C
Probab=39.71 E-value=68 Score=31.92 Aligned_cols=65 Identities=15% Similarity=0.071 Sum_probs=42.8
Q ss_pred CHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHc-------CCCCCCHHHHHHHHHh------cCCccccccHHHHHHHHhh
Q 027440 30 KAKEIENFFDKYANG-GIIDSPDGIVTLCKDL-------ELEYTDVRILMLAWYL------KAVKLGYFTQDEWETGLKT 95 (223)
Q Consensus 30 ~~~~l~~lF~~Y~d~-~~I~~~dGi~~~~~DL-------gv~~ed~~~LvLa~~l------~a~~~g~itr~eF~~g~~~ 95 (223)
.+..+..+|++|.+. +.++ .+++.+|+.=| +...++...++-...- ++...+.++.++|..-+..
T Consensus 14 ~p~~v~~~f~~~~~~~~~m~-~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNEFHGYDDDM-PELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 567899999999765 7888 99999999433 5556666555544221 1112245777777776644
No 49
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=39.09 E-value=1.1e+02 Score=20.17 Aligned_cols=54 Identities=20% Similarity=0.313 Sum_probs=36.4
Q ss_pred HHhcCCccccccHHHHHHHHhhcCCCc-HHHHHHHHHHHHHHh-CC---ChhhHHHHHh
Q 027440 74 WYLKAVKLGYFTQDEWETGLKTLQVNN-LSKLKKAISELEKEV-RT---PPNFADFYSF 127 (223)
Q Consensus 74 ~~l~a~~~g~itr~eF~~g~~~l~~ds-~~~lk~~l~~L~~~l-~~---~~~Fk~~Y~f 127 (223)
..+-...-|.|+++|+...+..++... -..++..+..+-+.+ .| --.|.+|.++
T Consensus 7 ~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 7 KKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred HHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 345566779999999999999998654 555666666666665 22 2245555543
No 50
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=38.22 E-value=71 Score=23.31 Aligned_cols=40 Identities=15% Similarity=0.326 Sum_probs=31.1
Q ss_pred cHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhCCChhhHHHHH
Q 027440 85 TQDEWETGLKTLQVNNLSKLKKAISELEKEVRTPPNFADFYS 126 (223)
Q Consensus 85 tr~eF~~g~~~l~~ds~~~lk~~l~~L~~~l~~~~~Fk~~Y~ 126 (223)
|+.+|+--+ -.|.|++.|-+.+..+...|.++.....||.
T Consensus 2 tk~eyLlkf--Rkcss~eTLEkv~e~~~y~L~~~~e~~~f~~ 41 (71)
T PRK10391 2 TVQDYLLKF--RKISSLESLEKLFDHLNYTLTDDQEIINMYR 41 (71)
T ss_pred cHHHHHHHH--HhcCcHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 677777533 3699999999999999999988666666664
No 51
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=36.94 E-value=99 Score=21.01 Aligned_cols=53 Identities=17% Similarity=0.126 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHhcCCccccccHHHHHHHHhhcC--CCcHHHHHHHHHHHHHHhCC
Q 027440 64 YTDVRILMLAWYLKAVKLGYFTQDEWETGLKTLQ--VNNLSKLKKAISELEKEVRT 117 (223)
Q Consensus 64 ~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~--~ds~~~lk~~l~~L~~~l~~ 117 (223)
...-+.-+|+.++..+.. .+|+++..+-+-.-+ ..+...++..|..|++.|.+
T Consensus 6 Lt~~e~~lL~~L~~~~~~-~vs~~~l~~~lw~~~~~~~~~~~l~~~i~~LR~~l~~ 60 (78)
T smart00862 6 LTPKEFRLLELLLRNPGR-VVSREELLEAVWGDDDDDVDDNTLDVHISRLRKKLED 60 (78)
T ss_pred cCHHHHHHHHHHHhCCCC-ccCHHHHHHHHcCCCCCCCccchHHHHHHHHHHHHhc
Confidence 344555677888877655 899999999643323 34667899999999999853
No 52
>PLN02228 Phosphoinositide phospholipase C
Probab=36.39 E-value=1.3e+02 Score=30.27 Aligned_cols=65 Identities=14% Similarity=0.238 Sum_probs=44.9
Q ss_pred CHHHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCCC-CCH-HHHHHHHHhcCC----ccccccHHHHHHHHhh
Q 027440 30 KAKEIENFFDKYANGGIIDSPDGIVTLCKDLELEY-TDV-RILMLAWYLKAV----KLGYFTQDEWETGLKT 95 (223)
Q Consensus 30 ~~~~l~~lF~~Y~d~~~I~~~dGi~~~~~DLgv~~-ed~-~~LvLa~~l~a~----~~g~itr~eF~~g~~~ 95 (223)
.+.+|..+|.+|.+.+.|+ .+++.+|+.+.+=+. .+. .+.-|-..++.. .-|.++.++|..-+..
T Consensus 22 ~~~ei~~if~~~s~~~~~t-~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 22 PPVSIKRLFEAYSRNGKMS-FDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CcHHHHHHHHHhcCCCccC-HHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 6789999999998777899 999999998775432 121 123333344321 2367999999888744
No 53
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=35.61 E-value=1.9e+02 Score=24.65 Aligned_cols=134 Identities=17% Similarity=0.219 Sum_probs=87.0
Q ss_pred CHHHHHHHHHhhcCC------CCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCccccccHHHHHHHHhhcCCCcHHH
Q 027440 30 KAKEIENFFDKYANG------GIIDSPDGIVTLCKDLELEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKTLQVNNLSK 103 (223)
Q Consensus 30 ~~~~l~~lF~~Y~d~------~~I~~~dGi~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~~ds~~~ 103 (223)
+..+|+.|+.+|+.- +.|. .+-+..+. .+..+|=...++-+....+.... ++.++|++++....+.+...
T Consensus 28 s~~EI~~L~~rF~kl~~~~~~g~lt-~eef~~i~-~~~~Np~~~rI~~~f~~~~~~~~--v~F~~Fv~~ls~f~~~~~~~ 103 (187)
T KOG0034|consen 28 SANEIERLYERFKKLDRNNGDGYLT-KEEFLSIP-ELALNPLADRIIDRFDTDGNGDP--VDFEEFVRLLSVFSPKASKR 103 (187)
T ss_pred CHHHHHHHHHHHHHhccccccCccC-HHHHHHHH-HHhcCcHHHHHHHHHhccCCCCc--cCHHHHHHHHhhhcCCccHH
Confidence 578899988888742 5677 88888877 88888888888887777766655 99999999999877665544
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHhHhhhccCccccccccHHHHHHHHHHhcCCCCh---hhHHHHHHHHHhc---CCCcc
Q 027440 104 LKKAISELEKEVRTPPNFADFYSFAFRYHLTEEKQKNIDIETICELLNLVLGPQFR---RQVDLLIDYLKVQ---SNYKV 177 (223)
Q Consensus 104 lk~~l~~L~~~l~~~~~Fk~~Y~f~F~f~~~~~~qK~L~~e~Ai~~W~lll~~~~~---~~l~~W~~Fl~~~---~~~k~ 177 (223)
.|- +|+|..=- -.+.-.|.-+.-...-..+++..-. ..+..=++++-.. ..-..
T Consensus 104 ~Kl-------------------~faF~vYD-~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~ 163 (187)
T KOG0034|consen 104 EKL-------------------RFAFRVYD-LDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGK 163 (187)
T ss_pred HHH-------------------HHHHHHhc-CCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCc
Confidence 222 12322211 1223447777777777777764322 3455555555322 12246
Q ss_pred CChhhHhHHH
Q 027440 178 INLDQWLGIF 187 (223)
Q Consensus 178 IskD~W~~~l 187 (223)
||.+-|+-++
T Consensus 164 IsfeEf~~~v 173 (187)
T KOG0034|consen 164 ISFEEFCKVV 173 (187)
T ss_pred CcHHHHHHHH
Confidence 8888777655
No 54
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=35.30 E-value=47 Score=25.63 Aligned_cols=64 Identities=23% Similarity=0.341 Sum_probs=45.1
Q ss_pred HHHHHHHHcCCCC---CCHHHHHHHHHhcCCccccccHHHHHHHHhh-cCC----CcHHHHHHHHHHHHHHhCCChhh
Q 027440 52 GIVTLCKDLELEY---TDVRILMLAWYLKAVKLGYFTQDEWETGLKT-LQV----NNLSKLKKAISELEKEVRTPPNF 121 (223)
Q Consensus 52 Gi~~~~~DLgv~~---ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~-l~~----ds~~~lk~~l~~L~~~l~~~~~F 121 (223)
-+++|+.+ .++| +.+..||.+-.- |.|+-|||...++. ++. .=+.=||+.||.|++++.+.+.|
T Consensus 12 tLi~las~-~~spev~~~Vr~LV~~L~~-----~~i~~EeF~~~Lq~~lns~pqP~lvPFLK~~lp~Lr~~l~~~~~~ 83 (96)
T PF07531_consen 12 TLIQLASD-KQSPEVGENVRELVQNLVD-----GKIEAEEFTSKLQEELNSSPQPYLVPFLKKSLPALRQELPNCARF 83 (96)
T ss_dssp HHHHHHCC-SC-CCHHHHHHHHHHHHHT-----TSS-HHHHHHHHHHHCTSS--TTHHHHHHHHHHHHHHCHCHHHHH
T ss_pred HHHHHhcC-CCChHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHhcCCCCcchHHHHHHhHHHHHHHHHHHHHH
Confidence 46677777 5555 345666665443 57999999999976 443 45789999999999999876654
No 55
>PLN02230 phosphoinositide phospholipase C 4
Probab=34.93 E-value=1.1e+02 Score=30.86 Aligned_cols=66 Identities=15% Similarity=0.288 Sum_probs=44.2
Q ss_pred cCHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHcCC-----CCCCHHHHHHHHHhc-----CCccccccHHHHHHHHhh
Q 027440 29 AKAKEIENFFDKYANG-GIIDSPDGIVTLCKDLEL-----EYTDVRILMLAWYLK-----AVKLGYFTQDEWETGLKT 95 (223)
Q Consensus 29 ~~~~~l~~lF~~Y~d~-~~I~~~dGi~~~~~DLgv-----~~ed~~~LvLa~~l~-----a~~~g~itr~eF~~g~~~ 95 (223)
..+.++..+|.+|.+. +.+. .+++.+|+.+-+= ++++..-++....-. ....+.++.++|..-+..
T Consensus 26 ~p~~ei~~lf~~~s~~~~~mt-~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 26 GPVADVRDLFEKYADGDAHMS-PEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCcHHHHHHHHHHhCCCCccC-HHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 3678999999999765 6788 9999999987763 233344444322111 112345899999987644
No 56
>PLN02222 phosphoinositide phospholipase C 2
Probab=34.59 E-value=94 Score=31.23 Aligned_cols=64 Identities=17% Similarity=0.270 Sum_probs=44.5
Q ss_pred CHHHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCCC----CCHHHHHHHHHhcCCccccccHHHHHHHHhh
Q 027440 30 KAKEIENFFDKYANGGIIDSPDGIVTLCKDLELEY----TDVRILMLAWYLKAVKLGYFTQDEWETGLKT 95 (223)
Q Consensus 30 ~~~~l~~lF~~Y~d~~~I~~~dGi~~~~~DLgv~~----ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~ 95 (223)
.+.+|..+|.+|.+.+.++ .+++.+|+.+-+=++ ++...|+=.+ -....-+.++.++|..-+..
T Consensus 23 ~~~ei~~if~~~~~~~~mt-~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~-~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIKTIFEKYSENGVMT-VDHLHRFLIDVQKQDKATREDAQSIINSA-SSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHHHHHHHHHhcCCCCcC-HHHHHHHHHHhcCCccCCHHHHHHHHHhh-hhhhhccCcCHHHHHHHhcC
Confidence 5679999999998767888 999999998866543 3333332221 12233466899999988754
No 57
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=32.34 E-value=84 Score=22.96 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=26.9
Q ss_pred cccccHHHHHHHHhh-----cCCC-cHHHHHHHHHHHHHHhCCChhhHHHHH
Q 027440 81 LGYFTQDEWETGLKT-----LQVN-NLSKLKKAISELEKEVRTPPNFADFYS 126 (223)
Q Consensus 81 ~g~itr~eF~~g~~~-----l~~d-s~~~lk~~l~~L~~~l~~~~~Fk~~Y~ 126 (223)
-|.|+++|+...|.. +|+. +-+.+...+..+...=.+.-.|.+|..
T Consensus 24 dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~ 75 (94)
T cd05031 24 KNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVS 75 (94)
T ss_pred CCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 489999999999876 3443 445555555544322222334555543
No 58
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=31.60 E-value=24 Score=24.40 Aligned_cols=53 Identities=13% Similarity=0.163 Sum_probs=25.9
Q ss_pred CCCCCCchHHHhhhcCCCccCHHHHHHHHHhhcCCCCCCCHHHHHHHH-HHcCCCCCCHHHHH
Q 027440 10 SSAPQNPPAVKSSNARSGKAKAKEIENFFDKYANGGIIDSPDGIVTLC-KDLELEYTDVRILM 71 (223)
Q Consensus 10 ~~~~~~~~a~~~~~~~~~~~~~~~l~~lF~~Y~d~~~I~~~dGi~~~~-~DLgv~~ed~~~Lv 71 (223)
+.+++..+++..+.+. .+.-|...|+.-... -.|+..|+ +-||++++++.-|.
T Consensus 11 ~~~~~~~~~~~~~~~~----~~e~l~~~l~~i~~~-----yGs~e~Yl~~~lgl~~~~i~~Lr 64 (68)
T PF13348_consen 11 GADDDARENLRSLMSV----RPEYLEAALDAIDER-----YGSVENYLREELGLSEEDIERLR 64 (68)
T ss_dssp -----------HHHS------HHHHHHHHHHHHHH-----HSSHHHHHHHT-T--HHHHHHHH
T ss_pred hhhhhhhhhhhhhcCc----cHHHHHHHHHHHHHH-----cCCHHHHHHHcCCCCHHHHHHHH
Confidence 3344444566666665 355677777666542 33888999 78899999887663
No 59
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=30.42 E-value=2.4e+02 Score=21.27 Aligned_cols=52 Identities=17% Similarity=0.260 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCccccccHHHHHHHHhhcC
Q 027440 45 GIIDSPDGIVTLCKDLELEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKTLQ 97 (223)
Q Consensus 45 ~~I~~~dGi~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~ 97 (223)
..|. .+-+.+||..-||+.+....-.++-.|+....-.|..++=.+-++++-
T Consensus 13 n~iT-~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia 64 (85)
T PF11116_consen 13 NNIT-AKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIA 64 (85)
T ss_pred hcCC-HHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 4578 999999999999999999999999999999999998888777776654
No 60
>PF04659 Arch_fla_DE: Archaeal flagella protein ; InterPro: IPR006752 Archaeal flagella are unique motility structures, and the absence of bacterial structural motility genes in the complete genome sequences of flagellated archaeal species has always suggested that archaeal flagellar biogenesis is likely mediated by novel components. FlaD and FlaE, are present in the cell as membrane-associated proteins but are not major components of isolated flagellar filaments. Interestingly, flaD was found to encode two proteins, each translated from a separate ribosome binding site. This group of sequences contain the archaeal flaD and flaE proteins. The conserved region that defines these sequences is found in the N-teminal region of flaE but towards the C-terminal region of flaD [].; GO: 0001539 ciliary or flagellar motility
Probab=30.37 E-value=91 Score=24.03 Aligned_cols=52 Identities=13% Similarity=0.317 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcC-------------CCccCChhhHhHHHHHhhhcCCCCCCCCCCCCCchhhHHHH
Q 027440 162 VDLLIDYLKVQS-------------NYKVINLDQWLGIFRFCNEISFPDLENYDETQAWPLILDNF 214 (223)
Q Consensus 162 l~~W~~Fl~~~~-------------~~k~IskD~W~~~l~F~~~v~~~dls~YDe~~AWP~liDeF 214 (223)
+=.|++||.+.- .-.-||.+.=.++++|++.+. .+-...+..+.|..-+|+=
T Consensus 21 ~~eWLefLve~~G~~~~~~~L~YY~~igWISe~V~~~L~~~~~G~~-~~~~~~~~~~~~~Lt~~DH 85 (99)
T PF04659_consen 21 VFEWLEFLVERVGHNNAADALDYYESIGWISEEVREQLLKYLKGFK-YDHDDFEWKPSWKLTIDDH 85 (99)
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHcCCcCHHHHHHHHHHHhCCC-CCccccccCCCCCCCHHHH
Confidence 345777776531 235699999999999998664 2222223367888888763
No 61
>PF06535 RGM_N: Repulsive guidance molecule (RGM) N-terminus; InterPro: IPR010536 This entry represents the N-terminal region of several mammalian and one bird sequence from Gallus gallus (Chicken). All of the mammalian proteins are hypothetical and have no known function but Q8JG54 from SWISSPROT from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum [].
Probab=30.07 E-value=14 Score=31.06 Aligned_cols=11 Identities=36% Similarity=0.954 Sum_probs=7.8
Q ss_pred CCCCCCchhhHH
Q 027440 201 YDETQAWPLILD 212 (223)
Q Consensus 201 YDe~~AWP~liD 212 (223)
=-.+|||| |||
T Consensus 120 C~v~GAWP-LId 130 (161)
T PF06535_consen 120 CKVEGAWP-LID 130 (161)
T ss_pred eeeeccee-eec
Confidence 33789999 455
No 62
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=29.75 E-value=31 Score=23.05 Aligned_cols=35 Identities=9% Similarity=0.117 Sum_probs=19.6
Q ss_pred CHHHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCCCCCH
Q 027440 30 KAKEIENFFDKYANGGIIDSPDGIVTLCKDLELEYTDV 67 (223)
Q Consensus 30 ~~~~l~~lF~~Y~d~~~I~~~dGi~~~~~DLgv~~ed~ 67 (223)
+...|.+++..- ...+. .+-+.++|+-||++|+++
T Consensus 23 s~~tl~~~~~~~--~~~~~-~~~l~~ia~~l~~~~~el 57 (63)
T PF13443_consen 23 SRSTLSRILNGK--PSNPS-LDTLEKIAKALNCSPEEL 57 (63)
T ss_dssp -HHHHHHHHTTT--------HHHHHHHHHHHT--HHHC
T ss_pred CHHHHHHHHhcc--ccccc-HHHHHHHHHHcCCCHHHH
Confidence 344555555422 14677 999999999999998865
No 63
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=29.15 E-value=1.7e+02 Score=26.58 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=25.4
Q ss_pred HHHHHHHHHHcCCCCCCH--------HHHHHHHHhcCCccccccHH
Q 027440 50 PDGIVTLCKDLELEYTDV--------RILMLAWYLKAVKLGYFTQD 87 (223)
Q Consensus 50 ~dGi~~~~~DLgv~~ed~--------~~LvLa~~l~a~~~g~itr~ 87 (223)
++++..+.+.+.-.|++. .-=.+.-.|..|.+| ++|+
T Consensus 115 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~P~lG-~~Re 159 (293)
T PF09712_consen 115 LDNWQDFFSSLSPDPEDFLEAFWKEQYRETLGRWLQMPALG-PSRE 159 (293)
T ss_pred HHHHHHHHHhcccCchhhHhhhHHHHHHHHHHHHHcCCcCC-cCHH
Confidence 567888888777777664 223566677888887 4555
No 64
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=29.14 E-value=6.1 Score=27.74 Aligned_cols=58 Identities=9% Similarity=0.040 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHhcCCccccccHHHHHHHHhhcCCCcHHHHHHHH
Q 027440 50 PDGIVTLCKDLELEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKTLQVNNLSKLKKAI 108 (223)
Q Consensus 50 ~dGi~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~~ds~~~lk~~l 108 (223)
.+-+.+++++.|.+++ ++..++-+-+.....-.=--+.-++.|...|+.|+++..++.
T Consensus 18 ~~~l~~~~~~~~~~~~-~v~~ai~~~~~~~~~~~~Yi~~Il~~W~~~gi~t~e~~~~~~ 75 (77)
T PF07261_consen 18 IEKLEKWIDDYGFSPE-VVNEAIEYALENNKRSFNYIEKILNNWKQKGIKTVEDAEEYE 75 (77)
T ss_dssp HHHHHHHHCCCHHHHH-HHHHHHHHHHHCT--SHHHHHHHHHHHHHCT--SCCCCT---
T ss_pred HHHHHHHHHHcCCCHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHh
Confidence 3455666665555544 444444333321111111223566778888888877665543
No 65
>PF00486 Trans_reg_C: Transcriptional regulatory protein, C terminal; InterPro: IPR001867 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain that is almost always found associated with the response regulator receiver domain (see IPR001789 from INTERPRO). It may play a role in DNA binding [].; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2K4J_A 2JPB_A 1ODD_A 1OPC_A 1KGS_A 2PMU_E 2JZY_A 1GXP_B 1QQI_A 2Z33_A ....
Probab=29.11 E-value=1.3e+02 Score=20.46 Aligned_cols=50 Identities=18% Similarity=0.140 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCccccccHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHhCC
Q 027440 67 VRILMLAWYLKAVKLGYFTQDEWETGLKTLQV-NNLSKLKKAISELEKEVRT 117 (223)
Q Consensus 67 ~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~~-ds~~~lk~~l~~L~~~l~~ 117 (223)
.+.-+|+.++..+.. .+|+++..+.+-.-.. .+-..|..+|..|++.|.+
T Consensus 9 ~e~~lL~~L~~~~~~-~vs~~~l~~~~w~~~~~~~~~~l~~~I~rLR~kL~~ 59 (77)
T PF00486_consen 9 KEFRLLELLLRNPGR-VVSREELIEALWGDEEDVSDNSLDVHISRLRKKLED 59 (77)
T ss_dssp HHHHHHHHHHHTTTS-EEEHHHHHHHHTSSSSTTCTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCC-CCCHHHhCChhhhcccccchhhHHHHHHHHHHHHhh
Confidence 445566666655433 7999999987655454 7888999999999999843
No 66
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=28.81 E-value=1.3e+02 Score=28.94 Aligned_cols=71 Identities=11% Similarity=0.248 Sum_probs=50.5
Q ss_pred CccCHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHcCCCCCCH-----------HHHHHHHH-----hcCCccc------
Q 027440 27 GKAKAKEIENFFDKYANG--GIIDSPDGIVTLCKDLELEYTDV-----------RILMLAWY-----LKAVKLG------ 82 (223)
Q Consensus 27 ~~~~~~~l~~lF~~Y~d~--~~I~~~dGi~~~~~DLgv~~ed~-----------~~LvLa~~-----l~a~~~g------ 82 (223)
+..+++.|++-|.-+.++ +++. .+.+..+|+.|.+.|.|+ +.++.|+- .|++.|-
T Consensus 154 sipd~~~L~~hYk~~ss~~YGE~~-~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a 232 (419)
T KOG3924|consen 154 SIPDPAILNQHYKSFSSETYGETQ-LEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCA 232 (419)
T ss_pred ccCCHHHHHHhhccccccchhhhh-HHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHH
Confidence 445778888888888877 7888 999999999999999884 44554443 2333331
Q ss_pred cccHHHHHHHHhhcCC
Q 027440 83 YFTQDEWETGLKTLQV 98 (223)
Q Consensus 83 ~itr~eF~~g~~~l~~ 98 (223)
.-.+++|..+|+..|-
T Consensus 233 ~~~~~~~kk~~k~fGk 248 (419)
T KOG3924|consen 233 ELNKEEFKKLMKHFGK 248 (419)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 3457788888887764
No 67
>PF06992 Phage_lambda_P: Replication protein P; InterPro: IPR009731 This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin [].; GO: 0006270 DNA-dependent DNA replication initiation
Probab=28.65 E-value=95 Score=27.65 Aligned_cols=31 Identities=3% Similarity=0.282 Sum_probs=28.7
Q ss_pred cHHHHHHHHhhcCCCcHHHHHHHHHHHHHHh
Q 027440 85 TQDEWETGLKTLQVNNLSKLKKAISELEKEV 115 (223)
Q Consensus 85 tr~eF~~g~~~l~~ds~~~lk~~l~~L~~~l 115 (223)
.|.+|+.++.+-|+.|+++++.-|...++.-
T Consensus 66 aKr~Wi~~f~engI~t~eQv~~Gm~~aR~~~ 96 (233)
T PF06992_consen 66 AKRQWIKAFAENGITTMEQVRAGMRRARASE 96 (233)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC
Confidence 4999999999999999999999999998874
No 68
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=28.41 E-value=53 Score=25.84 Aligned_cols=59 Identities=17% Similarity=0.204 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHhcC-CccccccHHHHHHHHhhcCCCcHHHHHHHHH
Q 027440 50 PDGIVTLCKDLELEYTDVRILMLAWYLKA-VKLGYFTQDEWETGLKTLQVNNLSKLKKAIS 109 (223)
Q Consensus 50 ~dGi~~~~~DLgv~~ed~~~LvLa~~l~a-~~~g~itr~eF~~g~~~l~~ds~~~lk~~l~ 109 (223)
-.=+.+.++++||.++|-.+--......+ ..-|.++++.|.+.++..|.+ .+++++.|.
T Consensus 86 ~~ll~q~A~~~gi~vsd~ev~~~i~~~~~f~~~g~~~~~~f~~~L~~~g~t-~~~~~~~lr 145 (154)
T PF13624_consen 86 QKLLLQEAKKLGISVSDAEVDDAIKQIPAFQENGKFDKEAFEEFLKQQGMT-EEEFKEELR 145 (154)
T ss_dssp HHHHHHHHHHTT----HHHHHHHHHH--HHHHH----HHHHHHHHH---------------
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhcc-ccccchhhh
Confidence 34456778999999877666544343221 123889999999999988874 455555543
No 69
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=28.22 E-value=39 Score=24.36 Aligned_cols=16 Identities=13% Similarity=0.312 Sum_probs=13.9
Q ss_pred cccccHHHHHHHHhhc
Q 027440 81 LGYFTQDEWETGLKTL 96 (223)
Q Consensus 81 ~g~itr~eF~~g~~~l 96 (223)
-++|||+||++-++.+
T Consensus 39 ~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 39 KKKISREEFVRKLRQI 54 (70)
T ss_pred HCCCCHHHHHHHHHHH
Confidence 5789999999999874
No 70
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=27.40 E-value=94 Score=15.72 Aligned_cols=19 Identities=21% Similarity=0.169 Sum_probs=12.6
Q ss_pred cCCccccccHHHHHHHHhh
Q 027440 77 KAVKLGYFTQDEWETGLKT 95 (223)
Q Consensus 77 ~a~~~g~itr~eF~~g~~~ 95 (223)
....-|.++.++|...++.
T Consensus 10 d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 10 DKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred CCCCCCcEeHHHHHHHHHh
Confidence 3444577888887777654
No 71
>COG3710 CadC DNA-binding winged-HTH domains [Transcription]
Probab=26.05 E-value=90 Score=25.48 Aligned_cols=71 Identities=17% Similarity=0.138 Sum_probs=48.9
Q ss_pred cCCCCCCHHHHHHHHHhcCCccccccHHHHHH-HHhhcCCCcHHHHHHHHHHHHHHhCCC----hhhHHHHHhHhhhc
Q 027440 60 LELEYTDVRILMLAWYLKAVKLGYFTQDEWET-GLKTLQVNNLSKLKKAISELEKEVRTP----PNFADFYSFAFRYH 132 (223)
Q Consensus 60 Lgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~-g~~~l~~ds~~~lk~~l~~L~~~l~~~----~~Fk~~Y~f~F~f~ 132 (223)
--|..+..+.-||..+++ .....++|+++++ -|..-.+..-. |-+.|..||+.|.+. ..+..|++==|.|.
T Consensus 28 ~~v~l~~~~~~lL~~L~e-~~geVvsk~eL~~~VW~~~~v~~~~-Ltq~I~~LRr~L~d~~~~~~~I~TvPrrGyk~~ 103 (148)
T COG3710 28 EVVKLGPRELKLLSLLLE-RAGEVVSKDELLDAVWPGRIVTVNT-LTQAISALRRALRDIGDGHRLIATVPRRGYKFT 103 (148)
T ss_pred eEEEecHHHHHHHHHHHh-ccCceecHHHHHHHhCCCceEccCh-HHHHHHHHHHHHhccCCcceEEEEeCCcceEEe
Confidence 445566677888888888 4445899999999 57775543333 999999999999653 33555555444443
No 72
>KOG2873 consensus Ubiquinol cytochrome c reductase assembly protein CBP3 [Energy production and conversion]
Probab=25.59 E-value=1.6e+02 Score=26.91 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=34.5
Q ss_pred hHHHHHhHhhhccCccccccccHHHHHHHHHHhcCCC---ChhhHHHHHHHHHhc
Q 027440 121 FADFYSFAFRYHLTEEKQKNIDIETICELLNLVLGPQ---FRRQVDLLIDYLKVQ 172 (223)
Q Consensus 121 Fk~~Y~f~F~f~~~~~~qK~L~~e~Ai~~W~lll~~~---~~~~l~~W~~Fl~~~ 172 (223)
++.+|.=.|.|- + |==+=+-..|+++|+-||.++ -+.+++.-.+|++.+
T Consensus 201 ~~qf~gaifaYD--e-G~l~dD~vLA~alWRnlF~~r~~~D~~hle~vV~YvR~q 252 (284)
T KOG2873|consen 201 ERQFYGAIFAYD--E-GFLSDDRVLATALWRNLFSGRGNVDLVHLEAVVRYVRSQ 252 (284)
T ss_pred HHHHHHHHHHhc--c-cccccchHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHH
Confidence 456666666653 2 433444588999999999987 235789999999764
No 73
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=25.58 E-value=1.4e+02 Score=20.78 Aligned_cols=35 Identities=9% Similarity=0.242 Sum_probs=22.9
Q ss_pred HHHHHHHHhhcCC-CCCCCHHHHHHHHHHcCCCCCCH
Q 027440 32 KEIENFFDKYANG-GIIDSPDGIVTLCKDLELEYTDV 67 (223)
Q Consensus 32 ~~l~~lF~~Y~d~-~~I~~~dGi~~~~~DLgv~~ed~ 67 (223)
..|++.|++-.=- ..++ .+-+..||.+|||+..-+
T Consensus 14 ~~Le~~fe~~~y~~~~~~-~~~r~~la~~lgl~~~vv 49 (58)
T TIGR01565 14 EKMRDFAEKLGWKLKDKR-REEVREFCEEIGVTRKVF 49 (58)
T ss_pred HHHHHHHHHcCCCCCCCC-HHHHHHHHHHhCCCHHHe
Confidence 4555566543210 2266 788999999999986533
No 74
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=25.01 E-value=2.1e+02 Score=19.48 Aligned_cols=46 Identities=20% Similarity=0.127 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHhcCCccccccHHHHHHHHhh
Q 027440 50 PDGIVTLCKDLELEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKT 95 (223)
Q Consensus 50 ~dGi~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~ 95 (223)
..-+.+|+..++|++++--...|-..+.-..-|....+||+.=.+.
T Consensus 4 f~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 4 FKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp HHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 5668899999999999999999999998888899999999875543
No 75
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=24.82 E-value=87 Score=19.04 Aligned_cols=27 Identities=7% Similarity=0.138 Sum_probs=19.7
Q ss_pred HHHHHHHhcCCCccCChhhHhHHHHHhh
Q 027440 164 LLIDYLKVQSNYKVINLDQWLGIFRFCN 191 (223)
Q Consensus 164 ~W~~Fl~~~~~~k~IskD~W~~~l~F~~ 191 (223)
.|++.+.+.. .-+||++.=+.||.|.+
T Consensus 4 EW~~Li~eA~-~~Gls~eeir~FL~~~k 30 (30)
T PF08671_consen 4 EWVELIKEAK-ESGLSKEEIREFLEFNK 30 (30)
T ss_dssp HHHHHHHHHH-HTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCCCHHHHHHHHHhCC
Confidence 5999998753 36899999999998853
No 76
>PLN02952 phosphoinositide phospholipase C
Probab=24.21 E-value=2.1e+02 Score=28.88 Aligned_cols=66 Identities=11% Similarity=0.134 Sum_probs=43.5
Q ss_pred cCHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHcCC----CCCCHHHHHHHHH--hc-CCc--cccccHHHHHHHHhh
Q 027440 29 AKAKEIENFFDKYANG-GIIDSPDGIVTLCKDLEL----EYTDVRILMLAWY--LK-AVK--LGYFTQDEWETGLKT 95 (223)
Q Consensus 29 ~~~~~l~~lF~~Y~d~-~~I~~~dGi~~~~~DLgv----~~ed~~~LvLa~~--l~-a~~--~g~itr~eF~~g~~~ 95 (223)
..+.+|..+|.+|... +.|. .+.+.+|+.+-.= +.++..-|+-... -+ ... -+.++.++|...+..
T Consensus 35 ~~r~ei~~lf~~~~~~~~~mt-~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 35 EPPDDVKDVFCKFSVGGGHMG-ADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred CChHHHHHHHHHHhCCCCccC-HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHcC
Confidence 4689999999999876 6788 9999999987553 3344443322111 01 111 134889999988853
No 77
>cd00383 trans_reg_C Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and a response regulator. The former autophosphorylates in a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. The C-terminal effector domain contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunite of RNA polymerase.
Probab=24.19 E-value=1.7e+02 Score=20.68 Aligned_cols=55 Identities=13% Similarity=0.110 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHhcCCccccccHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHhCC
Q 027440 62 LEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKTLQV-NNLSKLKKAISELEKEVRT 117 (223)
Q Consensus 62 v~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~~-ds~~~lk~~l~~L~~~l~~ 117 (223)
|.+..-+..+|+.++..+.. .+||++..+.+-.-.. .+-..|...|..|++.|.+
T Consensus 22 v~Lt~~e~~lL~~L~~~~~~-~vs~~~l~~~lw~~~~~~~~~~l~~~I~rLRkkl~~ 77 (95)
T cd00383 22 VELTPKEFELLELLARNPGR-VLSREQLLEAVWGDDYDVDDRTVDVHISRLRKKLED 77 (95)
T ss_pred EEeCHHHHHHHHHHHhCCCC-cCCHHHHHHHhcCCCCCCCcccHHHHHHHHHHHhcc
Confidence 44555566777777766543 7899999987644332 3567789999999999853
No 78
>PRK09849 putative oxidoreductase; Provisional
Probab=24.06 E-value=96 Score=31.86 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=27.3
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHhcCCccccccH
Q 027440 54 VTLCKDLELEYTDVRILMLAWYLKAVKLGYFTQ 86 (223)
Q Consensus 54 ~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr 86 (223)
..+|++||+|. +.-. +|||.|.+-..|.+++
T Consensus 370 n~Lcn~lGlDt-S~G~-tIA~amEl~ekGil~~ 400 (702)
T PRK09849 370 LNLFDDYGLWC-NYGQ-LHRDFTYCYSKGVFKR 400 (702)
T ss_pred HHHHHHhCCcc-cHHH-HHHHHHHHHHCCCCCc
Confidence 38999999999 7644 8999999999999986
No 79
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=24.03 E-value=79 Score=20.64 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCCCCCHHH
Q 027440 31 AKEIENFFDKYANGGIIDSPDGIVTLCKDLELEYTDVRI 69 (223)
Q Consensus 31 ~~~l~~lF~~Y~d~~~I~~~dGi~~~~~DLgv~~ed~~~ 69 (223)
...|++.|+. ...++ .+-+..++..|||++..|..
T Consensus 12 ~~~L~~~f~~---~~~p~-~~~~~~la~~l~l~~~~V~~ 46 (57)
T PF00046_consen 12 LKVLEEYFQE---NPYPS-KEEREELAKELGLTERQVKN 46 (57)
T ss_dssp HHHHHHHHHH---SSSCH-HHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHH---hcccc-cccccccccccccccccccc
Confidence 3456666664 34566 88899999999999877654
No 80
>PF07864 DUF1651: Protein of unknown function (DUF1651); InterPro: IPR012447 The proteins in this entry have not been characterised.
Probab=23.93 E-value=52 Score=23.61 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.3
Q ss_pred cccccHHHHHHHHHHhcCCCCh
Q 027440 138 QKNIDIETICELLNLVLGPQFR 159 (223)
Q Consensus 138 qK~L~~e~Ai~~W~lll~~~~~ 159 (223)
.|-|.++.|++.|+-|+..++.
T Consensus 47 rr~l~~~~A~e~W~~L~~~GW~ 68 (75)
T PF07864_consen 47 RRRLTREEARELWKELQKTGWR 68 (75)
T ss_pred EEEEEHHHHHHHHHHHHHcCCE
Confidence 5889999999999999987763
No 81
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=23.73 E-value=1.1e+02 Score=22.16 Aligned_cols=55 Identities=16% Similarity=0.208 Sum_probs=35.1
Q ss_pred CCccc-cccHHHHHHHHhh-cCC-----CcHHHHHHHHHHHHHHhCCChhhHHHHHhHhhhc
Q 027440 78 AVKLG-YFTQDEWETGLKT-LQV-----NNLSKLKKAISELEKEVRTPPNFADFYSFAFRYH 132 (223)
Q Consensus 78 a~~~g-~itr~eF~~g~~~-l~~-----ds~~~lk~~l~~L~~~l~~~~~Fk~~Y~f~F~f~ 132 (223)
...-| .|+++|+...++. +|. .+-+.++..+..+..+=...-.|.+|....-..+
T Consensus 21 ~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 21 KEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred ccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 44568 5999999999975 553 3556667666665443233445777766555444
No 82
>PLN02964 phosphatidylserine decarboxylase
Probab=23.42 E-value=3e+02 Score=28.09 Aligned_cols=61 Identities=15% Similarity=-0.026 Sum_probs=47.0
Q ss_pred HHHHHHhhcCC--CCCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCccccccHHHHHHHHhh
Q 027440 34 IENFFDKYANG--GIIDSPDGIVTLCKDLELEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKT 95 (223)
Q Consensus 34 l~~lF~~Y~d~--~~I~~~dGi~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~ 95 (223)
+.++|..+-.+ +.|+ .+-+..++..+|-...+-.+.-+--.+.-..-|.|+.+|+.+.|..
T Consensus 181 i~~mf~~~D~DgdG~Id-fdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 181 ARRILAIVDYDEDGQLS-FSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHhCCCCCCeEc-HHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 78889887433 6788 9999999999986554444555555666667799999999999988
No 83
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=23.42 E-value=1.7e+02 Score=21.52 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=31.8
Q ss_pred ccc-cccHHHHHHHHhh-cC-----CCcHHHHHHHHHHHHHHhCCChhhHHHHHhHhhh
Q 027440 80 KLG-YFTQDEWETGLKT-LQ-----VNNLSKLKKAISELEKEVRTPPNFADFYSFAFRY 131 (223)
Q Consensus 80 ~~g-~itr~eF~~g~~~-l~-----~ds~~~lk~~l~~L~~~l~~~~~Fk~~Y~f~F~f 131 (223)
.-| .||++|+...+.. ++ ..+...+...+.++..+=.+.-.|.+|-...-..
T Consensus 24 gdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 24 GDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred CCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 335 5999999999976 32 2345566666666644323344577776655443
No 84
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=23.20 E-value=79 Score=23.14 Aligned_cols=43 Identities=21% Similarity=0.375 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHhcCCccccccHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhC
Q 027440 50 PDGIVTLCKDLELEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKTLQVNNLSKLKKAISELEKEVR 116 (223)
Q Consensus 50 ~dGi~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~~ds~~~lk~~l~~L~~~l~ 116 (223)
+.-+..+..|+|++++++..++- =.+.++.|++.|..|++.++
T Consensus 47 l~~i~~L~~d~g~~l~~i~~~l~------------------------l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 47 LRRIQRLTQELGVNLAGVKRILE------------------------LEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHhc
Confidence 34566666778888887766553 22456677777777776653
No 85
>PF10036 RLL: Putative carnitine deficiency-associated protein; InterPro: IPR019265 This family of proteins conserved from nematodes to humans is of approximately 250 amino acids. It is purported to be carnitine deficiency-associated protein but this could not be confirmed. It carries a characteristic RLL sequence-motif. The function is unknown.
Probab=23.18 E-value=87 Score=27.79 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=23.2
Q ss_pred HHHHHHHHHHcCCC-CCCHHHHHHHHHhc
Q 027440 50 PDGIVTLCKDLELE-YTDVRILMLAWYLK 77 (223)
Q Consensus 50 ~dGi~~~~~DLgv~-~ed~~~LvLa~~l~ 77 (223)
++++.+||.|||.. ...-..-+|-|+++
T Consensus 57 ~~~~~kYl~dl~cP~~~~~~~~~ldWLL~ 85 (249)
T PF10036_consen 57 PKAFEKYLKDLGCPFSSESRQEQLDWLLG 85 (249)
T ss_pred HHHHHHHHHhcCCCCcchhHHHHHHHHHH
Confidence 57999999999999 46677778888775
No 86
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=23.17 E-value=1.8e+02 Score=21.37 Aligned_cols=52 Identities=12% Similarity=0.236 Sum_probs=34.0
Q ss_pred cccccHHHHHHHHhh---cCC-CcHHHHHHHHHHHHHHhCCChhhHHHHHhHhhhc
Q 027440 81 LGYFTQDEWETGLKT---LQV-NNLSKLKKAISELEKEVRTPPNFADFYSFAFRYH 132 (223)
Q Consensus 81 ~g~itr~eF~~g~~~---l~~-ds~~~lk~~l~~L~~~l~~~~~Fk~~Y~f~F~f~ 132 (223)
-|.|+++|+...++. +|. -|.+.+...+..++..=...-.|.+|-.+....+
T Consensus 26 ~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 26 KNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred CCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 579999999999973 454 3666666666665444334456777766554443
No 87
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=22.75 E-value=86 Score=25.53 Aligned_cols=124 Identities=15% Similarity=0.239 Sum_probs=57.0
Q ss_pred cCHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHcCCCC--CCHHHHHHHHHhcCCccccccHHHHHHHHhhcCCCcHH-HH
Q 027440 29 AKAKEIENFFDKYANG-GIIDSPDGIVTLCKDLELEY--TDVRILMLAWYLKAVKLGYFTQDEWETGLKTLQVNNLS-KL 104 (223)
Q Consensus 29 ~~~~~l~~lF~~Y~d~-~~I~~~dGi~~~~~DLgv~~--ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~~ds~~-~l 104 (223)
...+.|.++--.|.-- -.+||..|+-.+|.-|=+-. |.....++...+.-.....++. ++ .|+.. .+..++ -|
T Consensus 70 ~~~~~L~~IL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~-~~-~~~~~-~~~~~~~ll 146 (199)
T smart00164 70 PGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYGPNFYLP-DM-SGLQL-DLLQLDRLV 146 (199)
T ss_pred ccHHHHHHHHHHHHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCcccCCC-Ch-HHHHH-HHHHHHHHH
Confidence 3566677766666533 24777778776665433322 3233344444443222221211 10 01111 011111 22
Q ss_pred HHHHHHHHHHhCCChhhHHHHHhHhhhccCccccccccHHHHHHHHHHhcCCC
Q 027440 105 KKAISELEKEVRTPPNFADFYSFAFRYHLTEEKQKNIDIETICELLNLVLGPQ 157 (223)
Q Consensus 105 k~~l~~L~~~l~~~~~Fk~~Y~f~F~f~~~~~~qK~L~~e~Ai~~W~lll~~~ 157 (223)
+...|+|-+-+.+.... ..-.|++.+-+. --.+.++++.++.+|+.+|..+
T Consensus 147 ~~~~p~l~~~l~~~~~i-~~~~~~~~W~~~-lF~~~~~~~~~~riwD~~l~eG 197 (199)
T smart00164 147 KEYDPDLYKHLKDKLGI-DPSLYALRWFLT-LFARELPLEIVLRIWDVLFAEG 197 (199)
T ss_pred HHHCHHHHHHHHHhcCC-CchhHHHHHHHH-HHHhhCCHHHHHHHHHHHHhcC
Confidence 44444444444210000 011245555442 2357788999999999888654
No 88
>PRK10945 gene expression modulator; Provisional
Probab=22.28 E-value=1.5e+02 Score=21.69 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=29.9
Q ss_pred cHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhCCChhhHHHHH
Q 027440 85 TQDEWETGLKTLQVNNLSKLKKAISELEKEVRTPPNFADFYS 126 (223)
Q Consensus 85 tr~eF~~g~~~l~~ds~~~lk~~l~~L~~~l~~~~~Fk~~Y~ 126 (223)
|+.+|+--++ .|.|++.|-..+..++..|.+ ..+..||.
T Consensus 7 tk~dyL~~fR--rcss~eTLEkvie~~~~~L~~-~E~~~f~~ 45 (72)
T PRK10945 7 TKTDYLMRLR--RCQTIDTLERVIEKNKYELSD-DELAVFYS 45 (72)
T ss_pred cHHHHHHHHH--hcCcHHHHHHHHHHhhccCCH-HHHHHHHH
Confidence 8888886444 599999999999999998877 34555553
No 89
>PHA01083 hypothetical protein
Probab=22.22 E-value=1.3e+02 Score=25.12 Aligned_cols=46 Identities=13% Similarity=0.061 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCccccccHHHHHHHHhhc
Q 027440 46 IIDSPDGIVTLCKDLELEYTDVRILMLAWYLKAVKLGYFTQDEWETGLKTL 96 (223)
Q Consensus 46 ~I~~~dGi~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l 96 (223)
.|. -+-+.++++-+|+||+.+...+.+.+-+-+.. |.-|.+-.+++
T Consensus 43 ~i~-de~A~~LAe~aGiDp~eall~i~aDraetp~~----kalWesIaKKl 88 (149)
T PHA01083 43 YIS-DEEAIFLAESAGIDPEIALLGCHADRNENPRA----KAIWESIAKKQ 88 (149)
T ss_pred CCC-HHHHHHHHHHhCCCHHHHHHHHHHHhcCCHHH----HHHHHHHHHHH
Confidence 577 78899999999999998888888888776654 55566665553
No 90
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=22.17 E-value=2.1e+02 Score=20.24 Aligned_cols=61 Identities=13% Similarity=0.213 Sum_probs=34.0
Q ss_pred CHHHHHHHHHhcCC---ccccccHHHHHHHHhh-cCC-----CcHHHHHHHHHHHHHHhCCChhhHHHHH
Q 027440 66 DVRILMLAWYLKAV---KLGYFTQDEWETGLKT-LQV-----NNLSKLKKAISELEKEVRTPPNFADFYS 126 (223)
Q Consensus 66 d~~~LvLa~~l~a~---~~g~itr~eF~~g~~~-l~~-----ds~~~lk~~l~~L~~~l~~~~~Fk~~Y~ 126 (223)
++..+.-++.+=.. .-|.|+.+++...++. +|. .+...++..+..+...-.+.-.|.+|..
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~ 75 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLV 75 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHH
Confidence 34455555555444 5599999999999976 442 1344555554444332223334544443
No 91
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=22.13 E-value=4.2e+02 Score=21.34 Aligned_cols=45 Identities=18% Similarity=0.347 Sum_probs=27.2
Q ss_pred ccccHHHHHHHHhhcCCC-cHHHHHHHHH----HHHHHhC-CCh--hhHHHHH
Q 027440 82 GYFTQDEWETGLKTLQVN-NLSKLKKAIS----ELEKEVR-TPP--NFADFYS 126 (223)
Q Consensus 82 g~itr~eF~~g~~~l~~d-s~~~lk~~l~----~L~~~l~-~~~--~Fk~~Y~ 126 (223)
-+|...+|++-+.++--+ +-...|.++- .|...+. +|+ .+.++|+
T Consensus 74 ~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~ 126 (144)
T cd03568 74 QEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKNDPSLSLMSDLYK 126 (144)
T ss_pred HHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Confidence 588899999998876444 4445555544 4444454 332 3555554
No 92
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=21.44 E-value=69 Score=21.45 Aligned_cols=18 Identities=28% Similarity=0.648 Sum_probs=14.9
Q ss_pred CCccCChhhHhHHHHHhh
Q 027440 174 NYKVINLDQWLGIFRFCN 191 (223)
Q Consensus 174 ~~k~IskD~W~~~l~F~~ 191 (223)
.-...+.|||+.+++|+.
T Consensus 28 p~~vf~~~tW~hi~d~~~ 45 (47)
T PF11772_consen 28 PFDVFSPDTWQHIIDFFT 45 (47)
T ss_pred HHHhCCHHHHHHHHHHHc
Confidence 345789999999999974
No 93
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=21.24 E-value=1.1e+02 Score=17.54 Aligned_cols=17 Identities=29% Similarity=0.720 Sum_probs=14.1
Q ss_pred cHHHHHHHHHHHHHHhC
Q 027440 100 NLSKLKKAISELEKEVR 116 (223)
Q Consensus 100 s~~~lk~~l~~L~~~l~ 116 (223)
.++.+|..|.+|+.+|.
T Consensus 2 E~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLS 18 (23)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 36789999999999884
No 94
>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins.
Probab=20.75 E-value=1.6e+02 Score=17.20 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=18.0
Q ss_pred HhhcCC-CCCCCHHHHHHHHHHcCCCCCC
Q 027440 39 DKYANG-GIIDSPDGIVTLCKDLELEYTD 66 (223)
Q Consensus 39 ~~Y~d~-~~I~~~dGi~~~~~DLgv~~ed 66 (223)
.+|... ..+. .+-+.++|+-||++++.
T Consensus 28 ~~~~~~~~~~~-~~~~~~i~~~~~~~~~~ 55 (56)
T smart00530 28 SRIENGKRKPS-LETLKKLAKALGVSLDE 55 (56)
T ss_pred HHHHCCCCCCC-HHHHHHHHHHhCCChhh
Confidence 334443 3456 77888888888888764
No 95
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=20.24 E-value=73 Score=23.30 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=15.9
Q ss_pred HHHHHHHHHHcCCCCCCHHH
Q 027440 50 PDGIVTLCKDLELEYTDVRI 69 (223)
Q Consensus 50 ~dGi~~~~~DLgv~~ed~~~ 69 (223)
+.=+.++..||||+++.+.+
T Consensus 45 l~~~~rL~~Dl~in~~gi~l 64 (84)
T PF13591_consen 45 LRRIRRLHRDLGINLEGIAL 64 (84)
T ss_pred HHHHHHHHHHcCCCHHHHHH
Confidence 45678899999999987654
Done!