BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027441
(223 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84JC0|RRP8_ARATH Ribosomal RNA-processing protein 8 OS=Arabidopsis thaliana
GN=At5g40530 PE=2 SV=1
Length = 287
Score = 276 bits (705), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 134/200 (67%), Positives = 158/200 (79%), Gaps = 8/200 (4%)
Query: 20 KPQDQESYQSKSTAKTTAKKHKQDTVKNNEQQYEHHQTSAAASAKRPKPSSFLDKMRARL 79
KP +E ++ T K +K Q KN + H S+A S KRPKPS+FLD +R RL
Sbjct: 21 KPSKEEPIET--TPKNQNEKKNQRDTKN-----QQHGGSSAPS-KRPKPSNFLDALRERL 72
Query: 80 SGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDH 139
SGG FRMLNEKLYTC+GKEALDYF E+P +FDMYH+GYQ+QMS+WPELPVN I+ WL +
Sbjct: 73 SGGQFRMLNEKLYTCSGKEALDYFKEDPQMFDMYHTGYQQQMSNWPELPVNSIINWLLSN 132
Query: 140 SPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSL 199
S SLV+ADFGCGDAR+AKSVKNKVFSFDLVS +PSVIACDMSNT L SSSVDVAVFCLSL
Sbjct: 133 SSSLVVADFGCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTSLESSSVDVAVFCLSL 192
Query: 200 MGINFPNYLQEAQRVLKPRG 219
MG N+ +Y++EA RVL+P G
Sbjct: 193 MGTNYSSYIKEAHRVLRPSG 212
>sp|Q5U4F0|RRP8_RAT Ribosomal RNA-processing protein 8 OS=Rattus norvegicus GN=Rrp8
PE=2 SV=1
Length = 457
Score = 170 bits (430), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 95/146 (65%)
Query: 74 KMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIV 133
+M RL G FR LNE+LY+ A F E+P F +YH G+Q Q+ WP PV+ I
Sbjct: 242 RMTQRLDGARFRYLNEQLYSGPSSAAQCLFQEDPEAFLLYHRGFQRQVKKWPLHPVDRIA 301
Query: 134 KWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVA 193
K L+ SLV+ADFGCGD RLA SV+N V FDL + DP V CDM+ PL SVDVA
Sbjct: 302 KDLRQKPASLVVADFGCGDCRLASSVRNPVHCFDLAALDPRVTVCDMAQVPLEDESVDVA 361
Query: 194 VFCLSLMGINFPNYLQEAQRVLKPRG 219
VFCLSLMG N ++L+EA RVLKP G
Sbjct: 362 VFCLSLMGTNIRDFLEEANRVLKPGG 387
>sp|O43159|RRP8_HUMAN Ribosomal RNA-processing protein 8 OS=Homo sapiens GN=RRP8 PE=1
SV=2
Length = 456
Score = 170 bits (430), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 120/220 (54%), Gaps = 21/220 (9%)
Query: 2 KEGESRKRKRRRRHNSNSKPQ--DQESYQSKSTAKTTAKKHKQDTVKNNEQQYEHHQTSA 59
K+ +R++ +RR N PQ DQ ++ + + + D+ H+ A
Sbjct: 186 KQWRNRQKNKRRCKNKFQPPQVPDQAPAEAPTEKTEVSPVPRTDS----------HEARA 235
Query: 60 AASAKRPKPSSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQE 119
A R M RL G FR LNE+LY+ A F E+P F +YH G+Q
Sbjct: 236 GALRAR---------MAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQS 286
Query: 120 QMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACD 179
Q+ WP PV+ I + L+ SLV+ADFGCGD RLA S++N V FDL S DP V CD
Sbjct: 287 QVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCD 346
Query: 180 MSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRG 219
M+ PL SVDVAVFCLSLMG N ++L+EA RVLKP G
Sbjct: 347 MAQVPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGG 386
>sp|Q9DB85|RRP8_MOUSE Ribosomal RNA-processing protein 8 OS=Mus musculus GN=Rrp8 PE=1
SV=1
Length = 457
Score = 168 bits (426), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 94/146 (64%)
Query: 74 KMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIV 133
+M RL G FR LNE+LY+ A F E+P F +YH G+Q Q+ WP PV+ I
Sbjct: 242 RMTQRLDGARFRYLNEQLYSGPSSAARRLFQEDPEAFLLYHRGFQRQVKKWPLHPVDRIA 301
Query: 134 KWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVA 193
K L+ SLV+ADFGCGD RLA SV+N V FDL S DP V CDM+ PL SVDVA
Sbjct: 302 KDLRQKPASLVVADFGCGDCRLASSVRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVA 361
Query: 194 VFCLSLMGINFPNYLQEAQRVLKPRG 219
VFCLSLMG N ++L+EA RVLK G
Sbjct: 362 VFCLSLMGTNIRDFLEEANRVLKTGG 387
>sp|O44410|RRP8_CAEEL Ribosomal RNA-processing protein 8 OS=Caenorhabditis elegans
GN=T07A9.8 PE=3 SV=1
Length = 343
Score = 166 bits (419), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 106/159 (66%), Gaps = 2/159 (1%)
Query: 63 AKRPKPSSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMS 122
A P+ + + + + RL G FR LNEKLYTCTG EA D+F E+P FD+YH G+ +Q+
Sbjct: 118 AAAPEEADPIAEAKKRLDAGRFRFLNEKLYTCTGSEAFDFFKEDPTAFDLYHKGFADQVK 177
Query: 123 HWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSV--KNKVFSFDLVSNDPSVIACDM 180
WP P+ I++WL+ + D GCG+A++A++V K+K+ SFDLV+ + V +CDM
Sbjct: 178 KWPNHPLREIIRWLQSKPDQQSVFDLGCGEAKIAEAVGEKHKIRSFDLVAVNDRVESCDM 237
Query: 181 SNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRG 219
S P SS D+ ++CLSLMG N ++++EA+RVLK G
Sbjct: 238 SKLPAEDSSADIVIYCLSLMGTNLYDFIREARRVLKIGG 276
>sp|A8XI07|RRP8_CAEBR Ribosomal RNA-processing protein 8 OS=Caenorhabditis briggsae
GN=CBG13492 PE=3 SV=1
Length = 332
Score = 160 bits (406), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 100/150 (66%), Gaps = 2/150 (1%)
Query: 76 RARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKW 135
+ RL G FRMLNEKLYTCTG EA D+F E+ FD+YH G+ +Q+ WP P+ I++W
Sbjct: 120 KKRLDAGRFRMLNEKLYTCTGSEAFDFFKEDRTAFDLYHRGFADQVKKWPNHPLREIIRW 179
Query: 136 LKDHSPSLVIADFGCGDARLAKSV--KNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVA 193
L+ + D GCG+A++A++V K+ + SFDLV+ + V +CDMS P S DV
Sbjct: 180 LQAKPDKQAVFDLGCGEAKIAEAVGEKHTIRSFDLVAVNDRVESCDMSKLPAEDGSADVV 239
Query: 194 VFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223
+FCLSLMG N ++++EA+RVL+ G +I
Sbjct: 240 IFCLSLMGTNLYDFIKEARRVLRTGGVLKI 269
>sp|Q10257|RRP8_SCHPO Ribosomal RNA-processing protein 8 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp8 PE=3 SV=1
Length = 318
Score = 160 bits (406), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 115/171 (67%), Gaps = 12/171 (7%)
Query: 61 ASAKRPKPSSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQ 120
AK K +S KM+ +L G +FR +NE+LYT +A+ F ENP LFD+YH+G++ Q
Sbjct: 79 GDAKHTKLTSLQQKMKDKLDGANFRWINEQLYTTESDKAVQMFKENPDLFDIYHAGFRYQ 138
Query: 121 MSHWPELPVNIIVKWLK---DHSPS-----LVIADFGCGDARLAKSVKN----KVFSFDL 168
+ WPE PV+I ++ LK +HS + +VIAD GCG+A++A + + +V SFDL
Sbjct: 139 VEGWPENPVDIFIQHLKIRFEHSNAKKKNNIVIADLGCGEAKIASTFRKSRSLQVHSFDL 198
Query: 169 VSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRG 219
V+ + V+ACD++N P+ +VD+AVFCLSLMG N+ ++L+EA R+LK G
Sbjct: 199 VAPNEHVVACDIANVPMADETVDIAVFCLSLMGTNWQSFLKEAYRILKVGG 249
>sp|Q54CP1|RRP8_DICDI Ribosomal RNA-processing protein 8 OS=Dictyostelium discoideum
GN=rrp8 PE=3 SV=1
Length = 390
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 103/155 (66%), Gaps = 2/155 (1%)
Query: 67 KPSSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPE 126
K + ++M +L G FR LNE LYT KEA F+E+ +LFD YHSG++ Q+ WP
Sbjct: 154 KTTDLQNEMSEKLKGSRFRWLNETLYTTHSKEAFKEFSEDRSLFDQYHSGFKSQVESWPI 213
Query: 127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNK--VFSFDLVSNDPSVIACDMSNTP 184
P+++I+ L IAD GCG+A+LA+ +++K + SFDLV+ + V ACD+SN P
Sbjct: 214 NPLDLIIDDLSSIKQRKRIADLGCGEAKLAERLQHKHTIQSFDLVAVNERVTACDISNLP 273
Query: 185 LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRG 219
L + S+D+AVFCLSLMG NF +++ EA+RVL G
Sbjct: 274 LKNESIDIAVFCLSLMGTNFIDFIIEAERVLVKGG 308
>sp|Q7K2B0|RRP8_DROME Ribosomal RNA-processing protein 8 OS=Drosophila melanogaster
GN=CG7137 PE=1 SV=1
Length = 358
Score = 148 bits (373), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 110/164 (67%)
Query: 60 AASAKRPKPSSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQE 119
A S+ P +S K+++ L GG FR +NE+LY+ T ++A F ++ + F+ YH+GY++
Sbjct: 131 ATSSTTPAANSLASKLQSELLGGRFRYINEQLYSTTSRKAEALFRKDSSAFEAYHAGYRQ 190
Query: 120 QMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIACD 179
Q+ WP P+N I+K +K + +I DFGCG+ +LA+SV NKV+S DLV+ +IAC+
Sbjct: 191 QVEKWPINPLNRIIKTIKKIPKTAIIGDFGCGEGKLAQSVPNKVYSMDLVAARSDIIACN 250
Query: 180 MSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223
+++TPL + ++DVAV+CLSLMG + + EA RVLK G I
Sbjct: 251 ITDTPLQARTLDVAVYCLSLMGTDLNEFFLEANRVLKLHGTVYI 294
>sp|P38961|RRP8_YEAST Ribosomal RNA-processing protein 8 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRP8 PE=1 SV=2
Length = 392
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 126/259 (48%), Gaps = 41/259 (15%)
Query: 6 SRKRKRRRRHNSNSKPQDQESYQSKSTAKTTAKKHKQDTVKNNEQQYEHHQTSAAASAKR 65
+R++K + + K Q ++ S AK KK+++ + +N + H A +
Sbjct: 40 TREQKLKEETEAELKEQVEDIPSEGSVAKDIPKKNQEKSDQNETSKKRKHDEEAPLMQVK 99
Query: 66 P---KPSS-----FLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGY 117
KP+ KM A+L+G FR +NE+LYT + EAL E P LFD YH G+
Sbjct: 100 ENIEKPTKKQLTPLQQKMMAKLTGSRFRWINEQLYTISSDEALKLIKEQPQLFDEYHDGF 159
Query: 118 QEQMSHWPELPVNIIVKWLK----------------DHSPSLVIADFGCGDARLAKSVKN 161
+ Q+ WPE PV++ V ++ S +VIAD GCG+A+LA + N
Sbjct: 160 RSQVQAWPENPVDVFVDQIRYRCMKPVNAPGGLPGLKDSKEIVIADMGCGEAQLALEINN 219
Query: 162 -----------------KVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINF 204
KV SFDL + + D+ N PL S + VFCL+LMG NF
Sbjct: 220 FFKNYNKKAKKYLKRRHKVHSFDLKKANERITVADIRNVPLPDESCTIVVFCLALMGTNF 279
Query: 205 PNYLQEAQRVLKPRGEEQI 223
++++EA R+L PRGE I
Sbjct: 280 LDFIKEAYRILAPRGELWI 298
>sp|Q9TYP1|STRM1_CAEEL Sterol 4-C-methyltransferase strm-1 OS=Caenorhabditis elegans
GN=strm-1 PE=3 SV=2
Length = 334
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 143 LVIADFGCGDARLA--------KSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAV 194
L IADFG A+L + N+ F+ +S+ ++A D P S+ DVA
Sbjct: 111 LDIADFG---AKLTGVTIAPNEAEIGNEKFANMGISDRCKIVAADCQKMPFEDSTFDVAY 167
Query: 195 FCLSLMGI-NFPNYLQEAQRVLKPRG 219
SL I N ++E QRVLKP G
Sbjct: 168 AIYSLKYIPNLDKVMKEIQRVLKPGG 193
>sp|Q80Y20|ALKB8_MOUSE Alkylated DNA repair protein alkB homolog 8 OS=Mus musculus
GN=Alkbh8 PE=2 SV=1
Length = 664
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 32/134 (23%)
Query: 114 HSGYQEQMSH--------WPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKN-KVF 164
H Y E SH WP IV++LK ++AD GCG+ + K+ +
Sbjct: 376 HQVYNEIASHFSSTRHSPWPR-----IVEFLKALPSGSIVADIGCGNGKYLGINKDLYMI 430
Query: 165 SFDLVSNDPSV--------IACDMSNTPLNSSSVDVAVFCLSLMGINF-------PNYLQ 209
D N + + CD P+ S S D C+S+ I+ LQ
Sbjct: 431 GCDRSQNLVDICRERQFQALVCDALAVPVRSGSCDA---CISIAVIHHFATAERRVEALQ 487
Query: 210 EAQRVLKPRGEEQI 223
E R+L+P G+ I
Sbjct: 488 ELARLLRPGGQALI 501
>sp|A1A4L5|ALKB8_BOVIN Alkylated DNA repair protein alkB homolog 8 OS=Bos taurus GN=ALKBH8
PE=2 SV=1
Length = 664
Score = 37.4 bits (85), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 40/141 (28%)
Query: 111 DMYHSGYQEQMSH--------WPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNK 162
D H Y+E H WP IV++LK ++AD GCG+ + + N+
Sbjct: 373 DYVHRVYEEIARHFSSTRHTPWPH-----IVEFLKALPSGSLVADIGCGNGKYL-GINNE 426
Query: 163 VFSFDLVSNDPS-------------VIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPN-- 206
++ ++ D S CD P+ S S D C+S+ I +F
Sbjct: 427 LY---MIGCDHSQNLVDICRERQYQAFVCDALAVPIRSGSCDA---CISIAVIHHFATAE 480
Query: 207 ----YLQEAQRVLKPRGEEQI 223
LQE R+L+P G+ I
Sbjct: 481 RRVAALQELVRLLRPGGKALI 501
>sp|Q21FY5|BIOHC_SACD2 Biotin biosynthesis bifunctional protein BioHC OS=Saccharophagus
degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=bioC
PE=3 SV=1
Length = 558
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 20/109 (18%)
Query: 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVKN---KVFSFDLVSNDP------------- 173
N + +W+ + + IAD GCG ++ ++S DL
Sbjct: 324 NTLCEWVPEQAEK--IADLGCGTGYCGLQLQRPERDIYSLDLAQGMLHTARSKALAKQQL 381
Query: 174 -SVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGE 220
S + D+ P S+ D V +S+ + P EA RVLKP GE
Sbjct: 382 FSGVCADIECLPFISNGFDALVSGMSMQWCEDLPAVFSEAHRVLKPNGE 430
>sp|Q99MQ3|PINK1_MOUSE Serine/threonine-protein kinase PINK1, mitochondrial OS=Mus
musculus GN=Pink1 PE=2 SV=2
Length = 580
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 82 GHFR--MLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPV--------NI 131
GH R L K Y CT ++ L+ + L M E + H + + NI
Sbjct: 308 GHGRTLFLVMKNYPCTLRQYLEEQTPSSRLATMMTLQLLEGVDHLVQQGIAHRDLKSDNI 367
Query: 132 IVKWLKDHSPSLVIADFGC 150
+V+W D P LVI+DFGC
Sbjct: 368 LVEWDSDGCPWLVISDFGC 386
>sp|Q96BT7|ALKB8_HUMAN Alkylated DNA repair protein alkB homolog 8 OS=Homo sapiens
GN=ALKBH8 PE=1 SV=2
Length = 664
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 32/134 (23%)
Query: 114 HSGYQEQMSH--------WPELPVNIIVKWLKDHSPSLVIADFGCGDAR-LAKSVKNKVF 164
H Y+E H WP IV++LK ++AD GCG+ + L + + +
Sbjct: 376 HQVYEEIAGHFSSTRHTPWPH-----IVEFLKALPSGSIVADIGCGNGKYLGINKELYMI 430
Query: 165 SFDLVSNDPSV--------IACDMSNTPLNSSSVDVAVFCLSLMGI-NFPN------YLQ 209
D N + CD P+ S S D C+S+ I +F LQ
Sbjct: 431 GCDRSQNLVDICRERQFQAFVCDALAVPVRSGSCDA---CISIAVIHHFATAERRVAALQ 487
Query: 210 EAQRVLKPRGEEQI 223
E R+L+P G+ I
Sbjct: 488 EIVRLLRPGGKALI 501
>sp|Q80WQ4|K1456_MOUSE Putative methyltransferase KIAA1456 OS=Mus musculus GN=Kiaa1456
PE=2 SV=1
Length = 447
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 31/138 (22%)
Query: 102 YFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKN 161
Y N P D+ Q WP + ++L+D P ++AD GCG + K V +
Sbjct: 17 YENTAPYFTDL-------QSKAWPR-----VRQFLQDQKPGSLVADIGCGTGKYLK-VNS 63
Query: 162 KVFSFDLVSNDP----------SVIACDMSNTPLNSSSVDVAVFCLSLMGINFPN----- 206
+V + P V+ CD N P D A+ + ++ +F
Sbjct: 64 QVHTLGCDYCGPLVEIARNRGCEVMVCDNLNLPFRDQGFD-AIISIGVIH-HFSTKERRI 121
Query: 207 -YLQEAQRVLKPRGEEQI 223
++E RVL P G+ I
Sbjct: 122 RAIKEMARVLAPGGQLMI 139
>sp|Q95K79|ALKB8_MACFA Alkylated DNA repair protein alkB homolog 8 OS=Macaca fascicularis
GN=ALKBH8 PE=2 SV=1
Length = 664
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 55/138 (39%), Gaps = 40/138 (28%)
Query: 114 HSGYQEQMSH--------WPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFS 165
H Y+E H WP IV++LK ++AD GCG+ + V +++
Sbjct: 376 HQVYEEIAGHFSSTRHTPWPH-----IVEFLKALPSGSIVADIGCGNGKYL-GVNKELY- 428
Query: 166 FDLVSNDPS-------------VIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPN----- 206
+V D S CD P+ S S D C+S+ I +F
Sbjct: 429 --MVGCDRSQNLVDICRERQFQAFVCDALAVPVRSGSCDA---CISIAVIHHFATAERRV 483
Query: 207 -YLQEAQRVLKPRGEEQI 223
LQE R+L+P G+ I
Sbjct: 484 AALQEIVRLLRPGGKALI 501
>sp|C1D5S5|BIOC_LARHH Malonyl-CoA O-methyltransferase BioC OS=Laribacter hongkongensis
(strain HLHK9) GN=bioC PE=3 SV=1
Length = 297
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 168 LVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPN-YLQEAQRVLKPRG 219
L + P+++ D+ PL S S+D+ L+L +N P+ L E RVL+ G
Sbjct: 100 LFARAPALVCADLEQLPLASGSLDMVWSSLALQWLNTPDAVLAEFHRVLRVDG 152
>sp|D1I234|DRE2_VITVI Anamorsin homolog OS=Vitis vinifera GN=VIT_01s0010g01180 PE=3 SV=1
Length = 272
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 172 DPSVI--ACDMSNTPLNSSSVDVAV-FCLSLMGINFP--NYLQEAQRVLKPRG 219
DP +I A +S P+ SSS+D+ + C SL FP L E RVLKP G
Sbjct: 36 DPLIITQASSLSQLPVESSSLDIVISICRSL---EFPCDKLLAEISRVLKPGG 85
>sp|Q3MD91|UBIE_ANAVT Demethylmenaquinone methyltransferase OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=ubiE PE=3 SV=1
Length = 229
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 30/148 (20%)
Query: 104 NENPALFDMYHSGYQEQMSHWPELPVNII-----VKWLKDHSPSLVIADFGCGDA----R 154
NE A+FD Y +Q++ W L + I +KW P D CG R
Sbjct: 3 NEIRAIFDRIAPVY-DQLNDWLSLGQHRIWKEMAIKW-TGAKPGDTCLDLCCGSGDLALR 60
Query: 155 LAKSV--KNKVFSFDLVSN--------------DPSV--IACDMSNTPLNSSSVDVAVFC 196
LA+ V +V+ D +N P + + ++ + P + D A
Sbjct: 61 LARRVGSTGQVYGVDFSANLLETAKQRAQAQYPQPHISWVEANVLDLPFEDNQFDAATMG 120
Query: 197 LSLMGI-NFPNYLQEAQRVLKPRGEEQI 223
L + + P LQE +RVLKP + I
Sbjct: 121 YGLRNVTDIPRSLQELRRVLKPNAKAAI 148
>sp|B2IUM7|UBIE_NOSP7 Demethylmenaquinone methyltransferase OS=Nostoc punctiforme (strain
ATCC 29133 / PCC 73102) GN=ubiE PE=3 SV=1
Length = 230
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 30/148 (20%)
Query: 104 NENPALFDMYHSGYQEQMSHWPELPVNII-----VKWLKDHSPSLVIADFGCGDARLAKS 158
NE ++F+ Y +Q++ W L + I VKW S + + D CG LA
Sbjct: 3 NEVQSIFNRIAPVY-DQLNDWLSLGQHRIWKEMAVKWSAAKSGNTAL-DLCCGSGDLALR 60
Query: 159 VKNKV----------FSFDLVSN----------DPSV--IACDMSNTPLNSSSVDVAVFC 196
+ +V FS +L+ P++ + D+ N P + + D A
Sbjct: 61 LARRVGATGYVYGVDFSCNLLETAKERSQKQYPQPAIAWVEADVLNLPFDDNQFDAATMG 120
Query: 197 LSLMGI-NFPNYLQEAQRVLKPRGEEQI 223
L + + P LQE RVLKP + I
Sbjct: 121 YGLRNVKDIPRSLQELHRVLKPGAKAAI 148
>sp|Q562C4|MET7B_RAT Methyltransferase-like protein 7B OS=Rattus norvegicus GN=Mettl7b
PE=1 SV=1
Length = 244
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 185 LNSSSVDVAVFCLSLMGINFP-NYLQEAQRVLKPRG 219
L SS+DV V L L + P LQE QRVLKP G
Sbjct: 133 LADSSMDVVVCTLVLCSVQSPRKVLQEVQRVLKPGG 168
>sp|O34954|YODH_BACSU Uncharacterized methyltransferase YodH OS=Bacillus subtilis (strain
168) GN=yodH PE=3 SV=1
Length = 233
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 17/97 (17%)
Query: 140 SPSLVIADFGCGDARLAKSVKNKVFSFDLVSNDPSVIA-----------------CDMSN 182
SP I D GCG + A + + ++ +V DP ++ ++ +
Sbjct: 34 SPDQPILDAGCGTGQTAAYLGHLLYPVTVVDKDPIMLEKAKKRFANEGLAIPAYQAELEH 93
Query: 183 TPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRG 219
P +S S + L + LQE RVLKP G
Sbjct: 94 LPFSSESFSCVLSESVLSFSRLTSSLQEISRVLKPSG 130
>sp|A4G8P4|PRMA_HERAR Ribosomal protein L11 methyltransferase OS=Herminiimonas
arsenicoxydans GN=prmA PE=3 SV=1
Length = 309
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 131 IIVKWLKDHSP-SLVIADFGCGDARLAKSVK----NKVFSFDLVSNDPSVIACDMSNTPL 185
+ ++WL+ H+P L + D+GCG LA K + V D+ DP I + NT
Sbjct: 155 LCMEWLEAHAPIGLSVLDYGCGSGILAMIAKKLDADTVVGIDI---DPQAIQSAVFNTER 211
Query: 186 NSSSV 190
N V
Sbjct: 212 NHCDV 216
>sp|Q9DD20|MET7B_MOUSE Methyltransferase-like protein 7B OS=Mus musculus GN=Mettl7b PE=2
SV=2
Length = 244
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 185 LNSSSVDVAVFCLSLMGINFP-NYLQEAQRVLKPRG 219
L SS+DV V L L + P LQE QRVL+P G
Sbjct: 133 LADSSMDVVVCTLVLCSVQSPRKVLQEVQRVLRPGG 168
>sp|Q9BXM7|PINK1_HUMAN Serine/threonine-protein kinase PINK1, mitochondrial OS=Homo
sapiens GN=PINK1 PE=1 SV=1
Length = 581
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 82 GHFR--MLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPV--------NI 131
GH R L K Y CT ++ L +P L M E + H + + NI
Sbjct: 309 GHGRTLFLVMKNYPCTLRQYLCVNTPSPRLAAMMLLQLLEGVDHLVQQGIAHRDLKSDNI 368
Query: 132 IVKWLKDHSPSLVIADFGC 150
+V+ D P LVIADFGC
Sbjct: 369 LVELDPDGCPWLVIADFGC 387
>sp|Q8YLP4|UBIE_NOSS1 Demethylmenaquinone methyltransferase OS=Nostoc sp. (strain PCC
7120 / UTEX 2576) GN=ubiE PE=3 SV=1
Length = 229
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 56/148 (37%), Gaps = 30/148 (20%)
Query: 104 NENPALFDMYHSGYQEQMSHWPELPVNII-----VKWLKDHSPSLVIADFGCGDARLAKS 158
N+ A+FD Y +Q++ W L + I +KW P D CG LA
Sbjct: 3 NKIRAIFDRIAPVY-DQLNDWLSLGQHRIWKEMAIKW-TGAKPGDTCLDLCCGSGDLALR 60
Query: 159 VKNKV----------FSFDLVSN------------DPSVIACDMSNTPLNSSSVDVAVFC 196
+ +V FS +L+ + S + ++ + P + D A
Sbjct: 61 LARRVGSTGQVSGVDFSANLLETAKQRAQSQYPQPNISWVEANVLDLPFKDNQFDAATMG 120
Query: 197 LSLMGI-NFPNYLQEAQRVLKPRGEEQI 223
L + + P LQE RVLKP + I
Sbjct: 121 YGLRNVTDIPRSLQELHRVLKPNAKAAI 148
>sp|P46000|FASD_ECOLX Outer membrane usher protein FasD OS=Escherichia coli GN=fasD PE=3
SV=1
Length = 835
Score = 31.2 bits (69), Expect = 5.7, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 67 KPSSFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPE 126
+P S L +M+ G+ L Y +G A Y+NE+P L+ + GY+ M+ + E
Sbjct: 337 QPFSTLPEMKREGVSGYEISLGH--YNNSG--ATQYYNESPFLYASWSRGYRNGMTLYSE 392
Query: 127 LPVNIIVKWLKDHSPSLVIADFGC--GDARLAKSVK 160
+ + L S +L + DFG GDA L+++ K
Sbjct: 393 TIQSRKYQLLGVGS-TLSLGDFGAVSGDASLSRANK 427
>sp|B9RBT0|DRE2_RICCO Anamorsin homolog OS=Ricinus communis GN=RCOM_1680640 PE=3 SV=1
Length = 274
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 172 DPSVI--ACDMSNTPLNSSSVDVAV-FCLSLMGINFPNYLQEAQRVLKPRGEEQI 223
DP V+ A +S P++SSS+D+ + C SL +E RVLKP G I
Sbjct: 40 DPQVVTQASSLSKLPVDSSSMDIVISICRSLQ-FQGDFLFEEISRVLKPGGTVLI 93
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,727,675
Number of Sequences: 539616
Number of extensions: 3389385
Number of successful extensions: 15206
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 14931
Number of HSP's gapped (non-prelim): 352
length of query: 223
length of database: 191,569,459
effective HSP length: 113
effective length of query: 110
effective length of database: 130,592,851
effective search space: 14365213610
effective search space used: 14365213610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)