Query 027441
Match_columns 223
No_of_seqs 200 out of 1982
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 09:59:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027441.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027441hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3045 Predicted RNA methylas 100.0 6.1E-40 1.3E-44 269.2 14.4 222 2-223 31-262 (325)
2 PF05148 Methyltransf_8: Hypot 100.0 8.8E-36 1.9E-40 239.7 10.7 154 70-223 1-156 (219)
3 COG2226 UbiE Methylase involve 99.8 3E-20 6.5E-25 154.5 10.6 92 131-223 42-154 (238)
4 PF01209 Ubie_methyltran: ubiE 99.8 1.3E-19 2.9E-24 151.1 8.1 120 99-223 9-151 (233)
5 PF08241 Methyltransf_11: Meth 99.8 1.5E-18 3.3E-23 123.3 6.1 78 146-223 1-95 (95)
6 PLN02233 ubiquinone biosynthes 99.8 1.5E-17 3.3E-22 141.1 13.0 84 140-223 72-180 (261)
7 PRK10258 biotin biosynthesis p 99.7 8E-17 1.7E-21 135.5 12.3 93 130-223 32-138 (251)
8 PLN02244 tocopherol O-methyltr 99.7 8.3E-17 1.8E-21 141.4 11.9 83 141-223 118-221 (340)
9 PRK14103 trans-aconitate 2-met 99.7 7.5E-17 1.6E-21 136.2 10.6 92 130-223 19-124 (255)
10 PLN02396 hexaprenyldihydroxybe 99.7 8.1E-17 1.8E-21 140.1 7.9 83 141-223 131-233 (322)
11 PRK11088 rrmA 23S rRNA methylt 99.7 7E-17 1.5E-21 137.7 7.3 139 75-223 3-179 (272)
12 TIGR02752 MenG_heptapren 2-hep 99.7 6.1E-16 1.3E-20 128.4 11.2 92 131-223 36-149 (231)
13 PRK15068 tRNA mo(5)U34 methylt 99.7 3E-16 6.6E-21 136.8 9.2 92 130-223 112-224 (322)
14 KOG1540 Ubiquinone biosynthesi 99.7 7.4E-16 1.6E-20 127.3 10.7 93 130-223 90-212 (296)
15 PRK05785 hypothetical protein; 99.7 5.6E-16 1.2E-20 128.8 9.7 79 141-219 51-141 (226)
16 PRK01683 trans-aconitate 2-met 99.7 9.7E-16 2.1E-20 129.4 11.1 92 130-223 21-128 (258)
17 COG2227 UbiG 2-polyprenyl-3-me 99.6 1.1E-16 2.3E-21 131.8 5.0 83 141-223 59-159 (243)
18 PF13489 Methyltransf_23: Meth 99.6 2.4E-16 5.1E-21 122.8 6.1 93 131-223 12-113 (161)
19 PRK11036 putative S-adenosyl-L 99.6 6.7E-16 1.4E-20 130.4 8.9 83 141-223 44-147 (255)
20 PTZ00098 phosphoethanolamine N 99.6 9.8E-16 2.1E-20 130.1 9.4 93 130-223 42-154 (263)
21 PRK11207 tellurite resistance 99.6 1.4E-15 3E-20 123.9 9.2 95 126-222 16-131 (197)
22 TIGR02072 BioC biotin biosynth 99.6 3.9E-15 8.5E-20 123.2 11.1 93 131-223 22-133 (240)
23 PF13847 Methyltransf_31: Meth 99.6 1.2E-15 2.5E-20 119.0 7.3 82 141-223 3-108 (152)
24 TIGR00452 methyltransferase, p 99.6 1.7E-15 3.8E-20 131.3 9.1 92 130-223 111-223 (314)
25 TIGR00477 tehB tellurite resis 99.6 3.8E-15 8.2E-20 121.1 9.3 95 127-223 17-131 (195)
26 PLN02336 phosphoethanolamine N 99.6 4.3E-15 9.4E-20 135.9 10.5 92 131-223 257-367 (475)
27 PLN02490 MPBQ/MSBQ methyltrans 99.6 7.2E-15 1.6E-19 128.6 9.3 84 140-223 112-213 (340)
28 PF12847 Methyltransf_18: Meth 99.6 4.7E-15 1E-19 109.2 6.6 82 141-223 1-109 (112)
29 KOG1270 Methyltransferases [Co 99.6 1.7E-15 3.7E-20 125.7 4.6 79 142-223 90-193 (282)
30 PRK11873 arsM arsenite S-adeno 99.6 1.7E-14 3.7E-19 122.8 9.3 84 140-223 76-181 (272)
31 PRK11188 rrmJ 23S rRNA methylt 99.5 3.3E-14 7.1E-19 116.9 10.2 93 131-223 41-163 (209)
32 KOG3010 Methyltransferase [Gen 99.5 1.4E-14 3.1E-19 118.9 7.9 100 123-222 15-134 (261)
33 PRK08317 hypothetical protein; 99.5 3.4E-14 7.3E-19 117.4 10.3 92 131-223 10-122 (241)
34 PF08242 Methyltransf_12: Meth 99.5 9.7E-15 2.1E-19 105.5 5.3 76 146-221 1-99 (99)
35 PRK06922 hypothetical protein; 99.5 7E-14 1.5E-18 129.9 11.4 83 141-223 418-535 (677)
36 PF08003 Methyltransf_9: Prote 99.5 3.8E-14 8.2E-19 120.7 8.7 94 128-223 103-217 (315)
37 PF02353 CMAS: Mycolic acid cy 99.5 1.5E-14 3.3E-19 123.3 6.3 81 140-223 61-164 (273)
38 PRK15451 tRNA cmo(5)U34 methyl 99.5 5.4E-14 1.2E-18 118.4 9.1 81 141-223 56-162 (247)
39 PRK12335 tellurite resistance 99.5 6.2E-14 1.3E-18 120.5 9.0 90 132-223 112-221 (287)
40 COG2230 Cfa Cyclopropane fatty 99.5 5.6E-14 1.2E-18 119.2 8.4 90 130-223 62-174 (283)
41 TIGR03840 TMPT_Se_Te thiopurin 99.5 1E-13 2.3E-18 114.2 9.7 106 117-222 7-149 (213)
42 TIGR03587 Pse_Me-ase pseudamin 99.5 1.3E-13 2.9E-18 112.9 10.2 90 131-223 33-140 (204)
43 smart00828 PKS_MT Methyltransf 99.5 5E-14 1.1E-18 116.4 7.4 79 144-223 2-102 (224)
44 PF13649 Methyltransf_25: Meth 99.5 1.6E-14 3.4E-19 105.0 3.8 75 145-219 1-101 (101)
45 KOG4300 Predicted methyltransf 99.5 1.2E-13 2.6E-18 111.1 9.0 83 141-223 76-180 (252)
46 PRK00216 ubiE ubiquinone/menaq 99.5 4E-13 8.6E-18 111.3 12.5 92 131-223 42-156 (239)
47 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 3E-13 6.5E-18 110.9 11.4 91 132-223 31-141 (223)
48 PLN02336 phosphoethanolamine N 99.5 1E-13 2.3E-18 126.8 9.1 94 129-223 26-140 (475)
49 TIGR00740 methyltransferase, p 99.5 1.2E-13 2.5E-18 115.6 7.6 81 141-223 53-159 (239)
50 smart00138 MeTrc Methyltransfe 99.4 3.8E-13 8.3E-18 114.3 9.3 83 141-223 99-240 (264)
51 PRK00107 gidB 16S rRNA methylt 99.4 5.7E-13 1.2E-17 107.7 9.3 79 141-223 45-143 (187)
52 PF03848 TehB: Tellurite resis 99.4 3.9E-13 8.4E-18 108.6 7.9 91 131-223 21-131 (192)
53 PRK06202 hypothetical protein; 99.4 9.1E-13 2E-17 109.7 10.3 81 140-221 59-163 (232)
54 PRK11705 cyclopropane fatty ac 99.4 4.2E-13 9E-18 119.7 8.7 88 132-223 159-265 (383)
55 PRK00121 trmB tRNA (guanine-N( 99.4 3.2E-13 7E-18 110.4 6.6 83 141-223 40-154 (202)
56 TIGR00138 gidB 16S rRNA methyl 99.4 1E-12 2.3E-17 105.6 8.7 79 141-223 42-140 (181)
57 PRK13255 thiopurine S-methyltr 99.4 1.6E-12 3.5E-17 107.5 9.6 107 116-222 9-152 (218)
58 PF05401 NodS: Nodulation prot 99.4 9.3E-13 2E-17 105.9 7.6 82 141-223 43-144 (201)
59 PF07021 MetW: Methionine bios 99.4 6.4E-13 1.4E-17 106.5 6.5 84 130-216 5-103 (193)
60 TIGR02469 CbiT precorrin-6Y C5 99.4 1.9E-12 4.2E-17 96.4 8.6 89 132-223 11-120 (124)
61 PRK13944 protein-L-isoaspartat 99.4 2.3E-12 5.1E-17 105.5 9.2 88 130-223 62-171 (205)
62 PRK05134 bifunctional 3-demeth 99.4 2.7E-12 5.8E-17 106.7 9.2 83 141-223 48-149 (233)
63 TIGR00438 rrmJ cell division p 99.4 6.1E-12 1.3E-16 101.5 10.4 92 132-223 23-144 (188)
64 COG4106 Tam Trans-aconitate me 99.4 1.6E-12 3.4E-17 105.5 6.6 92 130-223 20-127 (257)
65 TIGR02081 metW methionine bios 99.3 3.8E-12 8.2E-17 103.2 8.2 86 130-218 5-105 (194)
66 TIGR00537 hemK_rel_arch HemK-r 99.3 9.8E-12 2.1E-16 99.5 10.4 90 131-223 10-138 (179)
67 PRK13942 protein-L-isoaspartat 99.3 6.3E-12 1.4E-16 103.5 9.4 88 130-223 66-174 (212)
68 TIGR02021 BchM-ChlM magnesium 99.3 5.1E-12 1.1E-16 104.3 8.7 90 130-222 43-155 (219)
69 PLN03075 nicotianamine synthas 99.3 1.2E-11 2.7E-16 105.9 11.2 82 141-223 123-231 (296)
70 PF05175 MTS: Methyltransferas 99.3 1.1E-11 2.4E-16 98.6 8.3 92 130-223 21-138 (170)
71 TIGR00080 pimt protein-L-isoas 99.3 1.5E-11 3.2E-16 101.4 9.3 88 130-223 67-175 (215)
72 TIGR00091 tRNA (guanine-N(7)-) 99.3 5.6E-12 1.2E-16 102.4 6.7 83 141-223 16-130 (194)
73 TIGR01983 UbiG ubiquinone bios 99.3 1.6E-11 3.4E-16 101.2 8.9 83 141-223 45-147 (224)
74 COG4976 Predicted methyltransf 99.2 1.9E-12 4.1E-17 105.8 1.8 83 141-223 125-223 (287)
75 TIGR02716 C20_methyl_CrtF C-20 99.2 2.8E-11 6E-16 104.8 9.2 91 130-223 139-252 (306)
76 PRK08287 cobalt-precorrin-6Y C 99.2 5.4E-11 1.2E-15 95.9 9.5 87 132-223 23-129 (187)
77 PRK15001 SAM-dependent 23S rib 99.2 4.6E-11 1E-15 106.1 9.6 92 130-223 218-338 (378)
78 PRK09489 rsmC 16S ribosomal RN 99.2 4.5E-11 9.8E-16 105.1 9.5 91 130-223 186-301 (342)
79 PRK14121 tRNA (guanine-N(7)-)- 99.2 4.3E-11 9.3E-16 106.2 9.3 92 131-223 113-233 (390)
80 PRK07580 Mg-protoporphyrin IX 99.2 5.3E-11 1.2E-15 98.4 9.0 89 130-221 50-162 (230)
81 PRK04266 fibrillarin; Provisio 99.2 6.8E-11 1.5E-15 98.3 9.4 82 140-223 71-174 (226)
82 PRK14967 putative methyltransf 99.2 1.3E-10 2.7E-15 96.3 10.6 98 125-223 18-157 (223)
83 PRK00312 pcm protein-L-isoaspa 99.2 7.9E-11 1.7E-15 96.7 9.4 87 131-223 69-173 (212)
84 KOG1541 Predicted protein carb 99.2 6.1E-11 1.3E-15 96.5 7.5 83 141-223 50-158 (270)
85 PRK13256 thiopurine S-methyltr 99.2 2.4E-10 5.2E-15 94.8 10.8 108 116-223 15-161 (226)
86 PRK00377 cbiT cobalt-precorrin 99.2 9.9E-11 2.1E-15 95.3 8.1 81 141-223 40-143 (198)
87 PTZ00146 fibrillarin; Provisio 99.2 2.2E-10 4.7E-15 98.0 10.1 82 140-223 131-235 (293)
88 TIGR00406 prmA ribosomal prote 99.2 1.2E-10 2.5E-15 100.3 8.3 79 141-223 159-257 (288)
89 PRK14968 putative methyltransf 99.1 2.7E-10 5.9E-15 91.0 9.6 91 131-223 14-146 (188)
90 TIGR03438 probable methyltrans 99.1 5.3E-10 1.2E-14 96.8 12.0 83 141-223 63-175 (301)
91 cd02440 AdoMet_MTases S-adenos 99.1 2.1E-10 4.6E-15 81.0 7.6 80 144-223 1-102 (107)
92 PF13659 Methyltransf_26: Meth 99.1 3.3E-11 7.1E-16 89.3 3.5 82 142-223 1-113 (117)
93 TIGR01177 conserved hypothetic 99.1 4.1E-10 8.9E-15 98.6 9.9 85 139-223 180-292 (329)
94 KOG1271 Methyltransferases [Ge 99.1 2.7E-10 5.9E-15 90.3 6.7 82 142-223 68-179 (227)
95 TIGR03534 RF_mod_PrmC protein- 99.1 8.3E-10 1.8E-14 92.4 10.1 82 141-223 87-215 (251)
96 PRK07402 precorrin-6B methylas 99.1 6.1E-10 1.3E-14 90.4 8.8 89 131-223 31-140 (196)
97 PLN02585 magnesium protoporphy 99.1 6E-10 1.3E-14 96.9 9.1 89 130-222 131-247 (315)
98 PLN02232 ubiquinone biosynthes 99.1 2.2E-10 4.8E-15 90.3 5.6 52 172-223 27-79 (160)
99 TIGR00536 hemK_fam HemK family 99.1 1.2E-09 2.7E-14 93.7 10.3 80 143-223 116-242 (284)
100 KOG2940 Predicted methyltransf 99.1 2.3E-10 5E-15 93.7 5.4 82 141-222 72-171 (325)
101 COG4123 Predicted O-methyltran 99.0 5E-10 1.1E-14 93.6 7.3 93 131-223 34-168 (248)
102 COG2518 Pcm Protein-L-isoaspar 99.0 6E-10 1.3E-14 90.7 7.6 90 128-223 60-167 (209)
103 PF03141 Methyltransf_29: Puta 99.0 9.5E-11 2.1E-15 105.6 3.1 82 142-223 118-217 (506)
104 PRK00517 prmA ribosomal protei 99.0 4.9E-10 1.1E-14 94.5 7.0 81 141-223 119-211 (250)
105 PF01135 PCMT: Protein-L-isoas 99.0 2E-10 4.4E-15 94.3 4.4 89 129-223 61-170 (209)
106 PRK13943 protein-L-isoaspartat 99.0 1.1E-09 2.5E-14 95.4 9.1 86 132-223 72-178 (322)
107 COG2242 CobL Precorrin-6B meth 99.0 1.7E-09 3.7E-14 86.4 9.3 89 131-223 25-133 (187)
108 PF01739 CheR: CheR methyltran 99.0 7.8E-10 1.7E-14 90.0 7.4 83 141-223 31-173 (196)
109 KOG2361 Predicted methyltransf 99.0 3.6E-10 7.8E-15 93.1 4.8 81 143-223 73-181 (264)
110 KOG1331 Predicted methyltransf 99.0 4.4E-10 9.5E-15 94.7 5.5 93 131-223 35-141 (293)
111 PF05724 TPMT: Thiopurine S-me 99.0 9.6E-10 2.1E-14 90.9 6.9 92 130-221 24-151 (218)
112 TIGR03533 L3_gln_methyl protei 99.0 2.8E-09 6.1E-14 91.6 10.1 82 141-223 121-249 (284)
113 PF00891 Methyltransf_2: O-met 99.0 3.2E-09 6.9E-14 88.8 10.1 81 140-223 99-197 (241)
114 KOG1975 mRNA cap methyltransfe 99.0 2.5E-09 5.4E-14 91.6 8.7 82 141-222 117-234 (389)
115 PF03291 Pox_MCEL: mRNA cappin 99.0 8.9E-10 1.9E-14 96.4 6.1 83 141-223 62-184 (331)
116 PF05219 DREV: DREV methyltran 99.0 2.2E-09 4.8E-14 89.8 8.1 83 141-223 94-186 (265)
117 COG2813 RsmC 16S RNA G1207 met 99.0 2.9E-09 6.2E-14 91.0 9.0 92 129-223 147-264 (300)
118 COG2264 PrmA Ribosomal protein 99.0 1.3E-09 2.8E-14 93.5 6.7 80 141-223 162-261 (300)
119 smart00650 rADc Ribosomal RNA 98.9 1.9E-09 4E-14 85.6 6.8 90 131-223 4-111 (169)
120 PRK11805 N5-glutamine S-adenos 98.9 4.6E-09 9.9E-14 91.2 9.5 80 143-223 135-261 (307)
121 PRK04457 spermidine synthase; 98.9 2.8E-09 6.1E-14 90.5 8.0 89 134-223 59-175 (262)
122 PRK09328 N5-glutamine S-adenos 98.9 7.8E-09 1.7E-13 87.8 10.6 82 141-223 108-236 (275)
123 PF05185 PRMT5: PRMT5 arginine 98.9 4.9E-09 1.1E-13 95.2 9.7 115 96-222 149-294 (448)
124 PF06325 PrmA: Ribosomal prote 98.9 3.8E-09 8.3E-14 90.9 8.4 89 131-223 150-257 (295)
125 PRK10611 chemotaxis methyltran 98.9 6.2E-09 1.3E-13 89.3 8.6 94 130-223 104-260 (287)
126 PRK14901 16S rRNA methyltransf 98.9 7.7E-09 1.7E-13 93.9 9.7 83 140-222 251-381 (434)
127 PRK14904 16S rRNA methyltransf 98.9 3.7E-09 8.1E-14 96.2 7.3 92 131-223 240-375 (445)
128 KOG1499 Protein arginine N-met 98.9 4.5E-09 9.7E-14 91.0 7.2 82 141-222 60-164 (346)
129 TIGR03704 PrmC_rel_meth putati 98.9 1.8E-08 3.8E-13 85.1 10.5 82 142-223 87-214 (251)
130 PRK14966 unknown domain/N5-glu 98.9 1.5E-08 3.2E-13 90.8 10.5 99 125-223 234-379 (423)
131 PHA03411 putative methyltransf 98.9 1.1E-08 2.5E-13 86.7 9.2 82 141-223 64-181 (279)
132 TIGR00446 nop2p NOL1/NOP2/sun 98.9 7.5E-09 1.6E-13 88.0 8.0 91 132-222 62-196 (264)
133 PRK00811 spermidine synthase; 98.9 6.6E-09 1.4E-13 89.2 7.6 83 141-223 76-189 (283)
134 PRK14903 16S rRNA methyltransf 98.9 9.9E-09 2.2E-13 93.0 9.1 86 138-223 234-364 (431)
135 PRK10901 16S rRNA methyltransf 98.9 9.3E-09 2E-13 93.1 8.8 84 140-223 243-370 (427)
136 PF06080 DUF938: Protein of un 98.8 9.4E-09 2E-13 83.6 7.4 93 129-223 15-139 (204)
137 TIGR00563 rsmB ribosomal RNA s 98.8 1.6E-08 3.6E-13 91.5 9.5 84 140-223 237-366 (426)
138 KOG2899 Predicted methyltransf 98.8 8.7E-09 1.9E-13 85.1 5.9 83 141-223 58-207 (288)
139 PLN02781 Probable caffeoyl-CoA 98.8 1.6E-08 3.5E-13 84.5 7.7 90 132-223 59-176 (234)
140 COG1352 CheR Methylase of chem 98.8 1.1E-07 2.4E-12 80.7 12.1 82 142-223 97-239 (268)
141 PF05891 Methyltransf_PK: AdoM 98.8 9.6E-09 2.1E-13 84.1 5.3 83 141-223 55-159 (218)
142 PRK14902 16S rRNA methyltransf 98.8 3.2E-08 7E-13 90.1 8.8 82 140-222 249-376 (444)
143 PRK01544 bifunctional N5-gluta 98.7 4.4E-08 9.5E-13 90.5 9.5 81 142-223 139-267 (506)
144 COG0293 FtsJ 23S rRNA methylas 98.7 1.1E-07 2.3E-12 77.4 9.5 94 130-223 34-157 (205)
145 PHA03412 putative methyltransf 98.7 1.1E-07 2.5E-12 79.0 9.4 79 141-220 49-158 (241)
146 PF02390 Methyltransf_4: Putat 98.7 2.9E-08 6.2E-13 80.8 5.7 81 143-223 19-131 (195)
147 PRK10909 rsmD 16S rRNA m(2)G96 98.7 1.1E-07 2.4E-12 77.6 8.6 94 130-223 42-157 (199)
148 PRK01581 speE spermidine synth 98.7 5.9E-08 1.3E-12 85.4 7.1 83 141-223 150-266 (374)
149 COG2519 GCD14 tRNA(1-methylade 98.6 1.4E-07 3E-12 78.7 8.7 87 131-223 85-193 (256)
150 PLN02366 spermidine synthase 98.6 1E-07 2.2E-12 82.8 7.9 84 140-223 90-204 (308)
151 TIGR00417 speE spermidine synt 98.6 1.5E-07 3.2E-12 80.3 8.2 83 141-223 72-184 (270)
152 PF11968 DUF3321: Putative met 98.6 1.9E-07 4E-12 76.4 8.2 91 130-220 33-139 (219)
153 TIGR00478 tly hemolysin TlyA f 98.6 1.2E-07 2.6E-12 78.9 7.2 84 131-222 65-168 (228)
154 KOG1269 SAM-dependent methyltr 98.6 5.4E-08 1.2E-12 86.0 5.3 84 140-223 109-213 (364)
155 PRK13168 rumA 23S rRNA m(5)U19 98.6 1.8E-07 3.9E-12 85.2 8.6 89 131-223 288-398 (443)
156 PRK11783 rlmL 23S rRNA m(2)G24 98.6 6.3E-08 1.4E-12 92.8 5.3 83 141-223 538-654 (702)
157 COG2890 HemK Methylase of poly 98.5 3.4E-07 7.4E-12 78.5 8.6 78 144-223 113-236 (280)
158 PF10294 Methyltransf_16: Puta 98.5 1.8E-07 3.8E-12 74.7 6.4 84 140-223 44-154 (173)
159 KOG1661 Protein-L-isoaspartate 98.5 2.2E-07 4.8E-12 75.4 6.2 88 131-223 71-191 (237)
160 PLN02476 O-methyltransferase 98.5 3.1E-07 6.7E-12 78.5 7.4 91 131-223 108-226 (278)
161 PRK15128 23S rRNA m(5)C1962 me 98.5 1.4E-07 3.1E-12 84.5 5.2 83 141-223 220-337 (396)
162 PRK03612 spermidine synthase; 98.5 2.7E-07 5.8E-12 85.7 6.6 83 141-223 297-413 (521)
163 PF01596 Methyltransf_3: O-met 98.4 2.2E-07 4.8E-12 76.2 4.5 90 132-223 36-153 (205)
164 PF08704 GCD14: tRNA methyltra 98.4 4.9E-07 1.1E-11 76.0 6.7 88 131-223 31-144 (247)
165 PF01728 FtsJ: FtsJ-like methy 98.4 4E-07 8.8E-12 72.8 5.9 83 141-223 23-137 (181)
166 PRK03522 rumB 23S rRNA methylu 98.4 6.5E-07 1.4E-11 78.0 7.6 89 132-223 165-272 (315)
167 COG0500 SmtA SAM-dependent met 98.4 1.3E-06 2.8E-11 64.7 8.2 79 145-223 52-153 (257)
168 PRK00274 ksgA 16S ribosomal RN 98.4 4.8E-07 1E-11 77.3 6.0 71 128-199 30-115 (272)
169 KOG1500 Protein arginine N-met 98.4 1.3E-06 2.9E-11 75.5 8.4 90 131-222 168-279 (517)
170 COG4122 Predicted O-methyltran 98.4 1.4E-06 3E-11 71.9 8.0 91 131-223 49-164 (219)
171 PRK14896 ksgA 16S ribosomal RN 98.4 8.4E-07 1.8E-11 75.2 6.9 68 130-200 19-102 (258)
172 TIGR00479 rumA 23S rRNA (uraci 98.4 1.1E-06 2.4E-11 79.7 7.9 81 141-223 292-394 (431)
173 PLN02672 methionine S-methyltr 98.4 2.3E-06 5E-11 84.7 10.1 99 125-223 98-276 (1082)
174 PLN02589 caffeoyl-CoA O-methyl 98.3 7.1E-07 1.5E-11 75.2 5.6 91 131-223 69-188 (247)
175 KOG2904 Predicted methyltransf 98.3 2.8E-06 6.1E-11 71.6 8.6 95 129-223 134-283 (328)
176 PF02527 GidB: rRNA small subu 98.3 4E-06 8.7E-11 67.6 9.1 76 144-223 51-146 (184)
177 COG0220 Predicted S-adenosylme 98.3 1.4E-06 3.1E-11 72.4 6.4 81 143-223 50-162 (227)
178 TIGR00095 RNA methyltransferas 98.3 6.1E-06 1.3E-10 66.8 9.0 93 131-223 39-157 (189)
179 TIGR00755 ksgA dimethyladenosi 98.3 2.5E-06 5.5E-11 72.0 6.9 67 130-199 19-104 (253)
180 COG2521 Predicted archaeal met 98.2 2E-06 4.4E-11 71.0 5.8 82 141-222 134-242 (287)
181 TIGR02085 meth_trns_rumB 23S r 98.2 4E-06 8.7E-11 74.8 7.9 81 141-223 233-332 (374)
182 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.2 1.4E-06 3.1E-11 73.5 4.8 83 141-223 56-197 (256)
183 COG2263 Predicted RNA methylas 98.2 3.3E-06 7.1E-11 67.7 6.3 54 141-197 45-116 (198)
184 COG1041 Predicted DNA modifica 98.2 3.7E-06 8.1E-11 73.3 7.0 93 131-223 187-308 (347)
185 COG3963 Phospholipid N-methylt 98.2 7.9E-06 1.7E-10 64.2 8.0 82 141-222 48-153 (194)
186 PRK11933 yebU rRNA (cytosine-C 98.2 8.3E-06 1.8E-10 74.7 9.4 85 138-222 110-239 (470)
187 PRK04148 hypothetical protein; 98.2 5.7E-06 1.2E-10 63.1 6.8 67 131-198 7-86 (134)
188 PLN02823 spermine synthase 98.2 5.1E-06 1.1E-10 73.0 7.5 83 141-223 103-218 (336)
189 PF07942 N2227: N2227-like pro 98.2 7.3E-06 1.6E-10 69.7 8.0 82 141-222 56-199 (270)
190 KOG3178 Hydroxyindole-O-methyl 98.2 1.5E-05 3.2E-10 69.5 9.9 79 142-223 178-273 (342)
191 PRK01544 bifunctional N5-gluta 98.2 2.3E-06 5E-11 79.2 5.3 83 141-223 347-460 (506)
192 PTZ00338 dimethyladenosine tra 98.1 4.6E-06 1E-10 72.1 5.9 70 130-202 26-114 (294)
193 PF03141 Methyltransf_29: Puta 98.1 1.1E-05 2.4E-10 73.2 7.3 83 141-223 365-465 (506)
194 KOG3420 Predicted RNA methylas 98.0 7E-06 1.5E-10 63.1 4.5 60 141-200 48-125 (185)
195 PRK04338 N(2),N(2)-dimethylgua 98.0 1.3E-05 2.9E-10 71.6 6.5 79 142-223 58-156 (382)
196 PF02475 Met_10: Met-10+ like- 97.9 1.3E-05 2.8E-10 65.5 5.0 79 140-222 100-199 (200)
197 KOG4589 Cell division protein 97.9 0.00011 2.4E-09 58.9 9.8 84 140-223 68-182 (232)
198 PF12147 Methyltransf_20: Puta 97.9 9.9E-05 2.1E-09 63.0 9.8 87 136-222 130-246 (311)
199 KOG1663 O-methyltransferase [S 97.9 9.7E-05 2.1E-09 60.9 8.7 85 135-223 68-181 (237)
200 KOG3191 Predicted N6-DNA-methy 97.8 9.9E-05 2.2E-09 58.9 8.1 81 142-223 44-166 (209)
201 KOG2352 Predicted spermine/spe 97.8 8.9E-05 1.9E-09 67.2 8.6 90 131-222 40-158 (482)
202 PF01170 UPF0020: Putative RNA 97.8 5.9E-05 1.3E-09 60.5 6.7 86 137-222 24-148 (179)
203 PRK00536 speE spermidine synth 97.8 9.3E-05 2E-09 62.8 8.2 77 140-223 71-169 (262)
204 TIGR03439 methyl_EasF probable 97.8 0.00042 9.2E-09 60.5 12.3 84 140-223 75-195 (319)
205 KOG3987 Uncharacterized conser 97.8 3.4E-06 7.3E-11 68.5 -0.7 82 142-223 113-205 (288)
206 COG0357 GidB Predicted S-adeno 97.8 5.5E-05 1.2E-09 62.3 6.3 78 142-222 68-165 (215)
207 PRK11760 putative 23S rRNA C24 97.8 9.2E-05 2E-09 64.8 7.9 74 140-216 210-294 (357)
208 COG4627 Uncharacterized protei 97.8 4.8E-06 1E-10 64.6 -0.1 76 144-223 5-84 (185)
209 COG0421 SpeE Spermidine syntha 97.8 0.00011 2.4E-09 63.1 8.1 80 143-223 78-188 (282)
210 PF03602 Cons_hypoth95: Conser 97.7 2.1E-05 4.5E-10 63.4 2.8 95 129-223 29-151 (183)
211 COG1092 Predicted SAM-dependen 97.7 6.4E-05 1.4E-09 67.2 5.6 88 136-223 212-334 (393)
212 COG0030 KsgA Dimethyladenosine 97.7 9.9E-05 2.2E-09 62.4 6.0 72 127-199 17-105 (259)
213 TIGR02143 trmA_only tRNA (urac 97.6 4.8E-05 1E-09 67.4 4.1 40 143-182 199-256 (353)
214 PRK11727 23S rRNA mA1618 methy 97.6 0.00013 2.8E-09 63.7 6.6 61 141-201 114-201 (321)
215 PF08123 DOT1: Histone methyla 97.6 4.3E-05 9.2E-10 62.7 3.3 91 131-222 33-155 (205)
216 PRK05031 tRNA (uracil-5-)-meth 97.6 6.6E-05 1.4E-09 66.7 4.4 40 143-182 208-265 (362)
217 COG4076 Predicted RNA methylas 97.6 0.00014 3E-09 58.4 5.7 79 142-222 33-132 (252)
218 COG0144 Sun tRNA and rRNA cyto 97.6 0.00033 7.2E-09 62.1 8.6 98 125-222 140-285 (355)
219 PF02384 N6_Mtase: N-6 DNA Met 97.6 9.9E-05 2.1E-09 64.0 5.1 99 124-223 30-181 (311)
220 PF01564 Spermine_synth: Sperm 97.5 9.9E-05 2.1E-09 62.2 4.3 83 141-223 76-189 (246)
221 PF09243 Rsm22: Mitochondrial 97.5 0.00031 6.6E-09 60.2 7.2 78 141-222 33-136 (274)
222 COG1189 Predicted rRNA methyla 97.5 0.00097 2.1E-08 55.4 9.4 89 131-222 69-175 (245)
223 KOG1099 SAM-dependent methyltr 97.4 0.0004 8.6E-09 57.4 5.9 81 142-222 42-160 (294)
224 PRK00050 16S rRNA m(4)C1402 me 97.3 0.00027 5.8E-09 61.1 4.7 71 129-200 8-101 (296)
225 KOG2915 tRNA(1-methyladenosine 97.3 0.0018 3.8E-08 54.9 8.4 88 130-222 95-207 (314)
226 KOG1709 Guanidinoacetate methy 97.3 0.0013 2.7E-08 54.1 7.3 98 123-222 85-203 (271)
227 KOG2798 Putative trehalase [Ca 97.2 0.001 2.2E-08 57.4 6.9 35 188-222 258-293 (369)
228 COG4798 Predicted methyltransf 97.2 0.0011 2.3E-08 53.7 5.9 83 140-223 47-164 (238)
229 PF10672 Methyltrans_SAM: S-ad 97.2 0.00022 4.9E-09 61.3 2.2 84 140-223 122-236 (286)
230 COG0742 N6-adenine-specific me 97.1 0.0022 4.8E-08 51.6 7.6 95 129-223 30-152 (187)
231 PF01269 Fibrillarin: Fibrilla 97.1 0.0024 5.2E-08 52.7 7.8 83 140-223 72-176 (229)
232 TIGR00308 TRM1 tRNA(guanine-26 97.1 0.00062 1.3E-08 60.8 4.7 78 143-223 46-145 (374)
233 PF00398 RrnaAD: Ribosomal RNA 97.1 0.0013 2.7E-08 55.9 6.3 70 129-199 19-107 (262)
234 COG3897 Predicted methyltransf 97.1 0.0014 3E-08 53.0 5.9 87 131-221 66-174 (218)
235 PF03059 NAS: Nicotianamine sy 97.1 0.0026 5.7E-08 54.4 8.0 81 143-223 122-228 (276)
236 KOG0822 Protein kinase inhibit 97.1 0.0016 3.5E-08 59.7 6.9 115 97-222 332-475 (649)
237 PLN02668 indole-3-acetate carb 97.0 0.0015 3.3E-08 58.3 6.5 18 185-202 158-175 (386)
238 COG2265 TrmA SAM-dependent met 97.0 0.0016 3.5E-08 59.2 6.4 65 130-195 283-368 (432)
239 KOG0820 Ribosomal RNA adenine 97.0 0.0021 4.5E-08 54.6 6.6 56 140-197 57-131 (315)
240 COG5459 Predicted rRNA methyla 97.0 0.00074 1.6E-08 59.1 3.7 83 141-223 113-223 (484)
241 PF03492 Methyltransf_7: SAM d 97.0 0.0022 4.7E-08 56.5 6.7 62 141-202 16-120 (334)
242 TIGR02987 met_A_Alw26 type II 97.0 0.0026 5.7E-08 59.2 7.7 45 126-170 10-73 (524)
243 COG2520 Predicted methyltransf 97.0 0.0027 5.9E-08 55.8 7.1 80 140-222 187-286 (341)
244 KOG2730 Methylase [General fun 96.9 0.00076 1.6E-08 55.5 2.9 100 98-197 47-173 (263)
245 PF09445 Methyltransf_15: RNA 96.8 0.00074 1.6E-08 53.3 2.0 54 144-197 2-77 (163)
246 PF04672 Methyltransf_19: S-ad 96.8 0.0091 2E-07 50.7 8.6 93 131-223 58-188 (267)
247 PF13578 Methyltransf_24: Meth 96.8 0.0002 4.3E-09 52.0 -1.3 78 146-223 1-103 (106)
248 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.6 0.0022 4.7E-08 55.2 4.1 84 139-222 83-216 (283)
249 PF04989 CmcI: Cephalosporin h 96.6 0.011 2.3E-07 48.5 7.8 83 141-223 32-145 (206)
250 PRK11783 rlmL 23S rRNA m(2)G24 96.5 0.005 1.1E-07 59.4 6.3 83 141-223 190-345 (702)
251 PF05958 tRNA_U5-meth_tr: tRNA 96.5 0.0027 5.8E-08 56.3 4.0 51 130-182 187-255 (352)
252 PF13679 Methyltransf_32: Meth 96.3 0.0073 1.6E-07 46.3 4.7 31 140-170 24-63 (141)
253 KOG3201 Uncharacterized conser 96.1 0.0021 4.5E-08 50.6 0.8 82 141-222 29-137 (201)
254 PF04816 DUF633: Family of unk 96.1 0.0086 1.9E-07 49.1 4.4 53 145-198 1-75 (205)
255 KOG1098 Putative SAM-dependent 95.9 0.012 2.6E-07 55.1 4.9 83 140-222 43-155 (780)
256 KOG2793 Putative N2,N2-dimethy 95.8 0.02 4.4E-07 48.2 5.5 82 141-222 86-196 (248)
257 KOG3115 Methyltransferase-like 95.6 0.017 3.6E-07 47.2 4.1 29 141-169 60-93 (249)
258 KOG2920 Predicted methyltransf 95.6 0.016 3.4E-07 49.5 4.2 83 140-222 115-231 (282)
259 COG2384 Predicted SAM-dependen 95.6 0.041 8.9E-07 45.4 6.3 65 130-198 8-94 (226)
260 KOG1122 tRNA and rRNA cytosine 95.5 0.037 8E-07 49.7 6.4 82 140-222 240-368 (460)
261 PF07091 FmrO: Ribosomal RNA m 95.5 0.033 7.3E-07 46.8 5.6 72 130-202 93-184 (251)
262 KOG2187 tRNA uracil-5-methyltr 95.4 0.014 3.1E-07 53.5 3.4 43 140-182 382-442 (534)
263 TIGR01444 fkbM_fam methyltrans 95.4 0.013 2.7E-07 44.5 2.7 27 144-170 1-32 (143)
264 PF03269 DUF268: Caenorhabditi 95.3 0.0083 1.8E-07 47.1 1.3 37 187-223 61-109 (177)
265 COG1889 NOP1 Fibrillarin-like 95.0 0.23 5E-06 40.6 8.9 83 140-223 75-178 (231)
266 PTZ00357 methyltransferase; Pr 94.9 0.1 2.2E-06 49.9 7.5 125 96-220 638-830 (1072)
267 COG4262 Predicted spermidine s 94.9 0.065 1.4E-06 47.5 5.9 83 141-223 289-405 (508)
268 PF07757 AdoMet_MTase: Predict 94.8 0.092 2E-06 38.5 5.5 30 141-170 58-90 (112)
269 PF11599 AviRa: RRNA methyltra 94.7 0.064 1.4E-06 44.2 5.1 30 141-170 51-87 (246)
270 COG1064 AdhP Zn-dependent alco 94.5 0.13 2.9E-06 45.2 7.0 77 140-223 165-257 (339)
271 COG0116 Predicted N6-adenine-s 94.4 0.073 1.6E-06 47.5 5.0 83 140-222 190-341 (381)
272 TIGR00006 S-adenosyl-methyltra 94.3 0.084 1.8E-06 45.9 5.2 70 130-200 10-103 (305)
273 PF06962 rRNA_methylase: Putat 93.8 0.048 1E-06 41.9 2.4 62 162-223 1-90 (140)
274 COG1063 Tdh Threonine dehydrog 93.7 0.091 2E-06 46.5 4.4 78 141-223 168-267 (350)
275 KOG4058 Uncharacterized conser 93.5 0.22 4.7E-06 38.8 5.5 69 131-200 63-151 (199)
276 KOG1596 Fibrillarin and relate 91.8 0.79 1.7E-05 38.6 7.1 83 140-223 155-259 (317)
277 cd08254 hydroxyacyl_CoA_DH 6-h 90.8 1.9 4E-05 36.9 8.9 78 140-222 164-260 (338)
278 cd08283 FDH_like_1 Glutathione 90.7 1.2 2.7E-05 39.5 7.8 84 140-223 183-304 (386)
279 PRK09424 pntA NAD(P) transhydr 90.7 1.2 2.5E-05 41.6 7.8 82 141-222 164-282 (509)
280 PF05971 Methyltransf_10: Prot 89.2 1.6 3.4E-05 37.9 7.0 73 130-202 87-190 (299)
281 PRK09880 L-idonate 5-dehydroge 89.2 0.86 1.9E-05 39.7 5.6 78 141-223 169-264 (343)
282 PF04445 SAM_MT: Putative SAM- 88.8 0.3 6.5E-06 40.8 2.3 71 131-201 64-163 (234)
283 KOG2671 Putative RNA methylase 88.7 0.56 1.2E-05 41.4 3.9 97 127-223 194-352 (421)
284 KOG1562 Spermidine synthase [A 88.6 0.69 1.5E-05 40.0 4.3 84 140-223 120-234 (337)
285 PF11312 DUF3115: Protein of u 88.2 0.39 8.4E-06 41.8 2.6 35 189-223 200-240 (315)
286 COG0286 HsdM Type I restrictio 87.7 4.6 0.0001 37.5 9.5 98 124-222 170-323 (489)
287 PF12692 Methyltransf_17: S-ad 87.7 0.52 1.1E-05 36.6 2.7 81 142-222 29-131 (160)
288 PRK10742 putative methyltransf 87.6 0.97 2.1E-05 38.1 4.6 72 130-202 76-177 (250)
289 PRK11524 putative methyltransf 87.6 0.52 1.1E-05 40.4 3.0 19 205-223 60-78 (284)
290 COG4301 Uncharacterized conser 86.9 5.3 0.00011 34.0 8.4 86 136-223 73-191 (321)
291 TIGR01202 bchC 2-desacetyl-2-h 86.9 1.5 3.2E-05 37.7 5.6 76 141-223 144-229 (308)
292 KOG2651 rRNA adenine N-6-methy 86.6 1.2 2.7E-05 39.8 4.8 40 131-170 143-186 (476)
293 cd00315 Cyt_C5_DNA_methylase C 86.2 1 2.2E-05 38.5 4.1 54 144-197 2-70 (275)
294 cd08237 ribitol-5-phosphate_DH 85.6 1.7 3.7E-05 37.9 5.3 81 141-223 163-254 (341)
295 PF05711 TylF: Macrocin-O-meth 85.3 1.9 4.2E-05 36.4 5.2 18 206-223 193-210 (248)
296 PHA01634 hypothetical protein 84.8 1 2.2E-05 34.2 3.0 30 141-170 28-61 (156)
297 COG3510 CmcI Cephalosporin hyd 84.7 4.6 0.0001 33.0 6.8 83 141-223 69-178 (237)
298 cd05188 MDR Medium chain reduc 84.2 2.9 6.4E-05 34.1 5.9 79 140-223 133-230 (271)
299 PRK01747 mnmC bifunctional tRN 84.0 2.3 4.9E-05 40.9 5.8 35 188-222 165-203 (662)
300 PF11899 DUF3419: Protein of u 83.7 1.7 3.8E-05 39.0 4.5 52 172-223 276-332 (380)
301 PF01795 Methyltransf_5: MraW 83.4 2 4.4E-05 37.5 4.6 70 129-199 9-103 (310)
302 KOG2198 tRNA cytosine-5-methyl 81.6 4.6 0.0001 36.0 6.2 83 140-222 154-293 (375)
303 KOG1501 Arginine N-methyltrans 81.6 1.7 3.7E-05 39.7 3.6 28 143-170 68-99 (636)
304 cd08230 glucose_DH Glucose deh 81.3 4.1 9E-05 35.5 6.0 76 141-223 172-267 (355)
305 PF01555 N6_N4_Mtase: DNA meth 80.6 2.1 4.5E-05 34.4 3.6 31 140-170 190-223 (231)
306 PF08484 Methyltransf_14: C-me 80.5 9.8 0.00021 29.8 7.2 78 141-223 67-157 (160)
307 PF03686 UPF0146: Uncharacteri 80.3 6 0.00013 29.9 5.6 67 132-198 4-79 (127)
308 KOG2539 Mitochondrial/chloropl 79.1 2.4 5.1E-05 38.9 3.7 83 141-223 200-313 (491)
309 TIGR03451 mycoS_dep_FDH mycoth 78.9 6.1 0.00013 34.6 6.3 79 140-223 175-274 (358)
310 TIGR00027 mthyl_TIGR00027 meth 78.8 18 0.0004 30.6 8.9 91 131-223 73-195 (260)
311 PF06460 NSP13: Coronavirus NS 77.6 8.3 0.00018 32.9 6.2 92 131-223 47-167 (299)
312 TIGR02822 adh_fam_2 zinc-bindi 77.6 9.1 0.0002 33.2 6.9 77 140-223 164-252 (329)
313 TIGR00561 pntA NAD(P) transhyd 77.6 5.4 0.00012 37.3 5.7 82 141-222 163-281 (511)
314 cd00401 AdoHcyase S-adenosyl-L 77.5 7.7 0.00017 35.3 6.5 85 130-222 190-286 (413)
315 COG1568 Predicted methyltransf 76.8 1.2 2.6E-05 38.2 1.1 113 74-194 91-226 (354)
316 PF00107 ADH_zinc_N: Zinc-bind 76.0 5.7 0.00012 29.0 4.5 31 188-223 57-87 (130)
317 cd08234 threonine_DH_like L-th 76.0 6.9 0.00015 33.4 5.7 78 140-222 158-254 (334)
318 PF06859 Bin3: Bicoid-interact 75.5 1.3 2.8E-05 32.6 0.9 31 193-223 7-42 (110)
319 cd08232 idonate-5-DH L-idonate 75.4 8.4 0.00018 33.1 6.1 77 141-222 165-259 (339)
320 COG0275 Predicted S-adenosylme 74.5 7.7 0.00017 33.7 5.4 69 130-199 13-106 (314)
321 KOG0024 Sorbitol dehydrogenase 74.3 14 0.0003 32.6 6.9 80 139-223 167-271 (354)
322 PLN02586 probable cinnamyl alc 72.8 15 0.00033 32.2 7.2 78 141-223 183-276 (360)
323 COG0686 Ald Alanine dehydrogen 72.7 4.9 0.00011 35.2 3.8 81 142-222 168-265 (371)
324 PF05206 TRM13: Methyltransfer 72.3 4.8 0.0001 34.2 3.7 31 140-170 17-57 (259)
325 PRK13699 putative methylase; P 72.3 5.7 0.00012 32.9 4.1 44 128-171 149-196 (227)
326 PF10354 DUF2431: Domain of un 72.3 15 0.00034 28.9 6.3 39 185-223 71-123 (166)
327 KOG1253 tRNA methyltransferase 72.2 1.5 3.2E-05 40.5 0.5 81 140-223 108-214 (525)
328 PRK11524 putative methyltransf 72.0 6.9 0.00015 33.5 4.6 43 129-171 195-241 (284)
329 cd08281 liver_ADH_like1 Zinc-d 71.5 10 0.00023 33.3 5.8 79 140-223 190-288 (371)
330 cd08245 CAD Cinnamyl alcohol d 70.4 28 0.00062 29.6 8.2 78 140-222 161-253 (330)
331 TIGR03366 HpnZ_proposed putati 70.4 8 0.00017 32.6 4.7 78 141-223 120-216 (280)
332 COG1255 Uncharacterized protei 69.9 31 0.00067 25.8 6.9 57 141-197 13-78 (129)
333 PF02636 Methyltransf_28: Puta 69.2 5.9 0.00013 33.2 3.5 29 142-170 19-60 (252)
334 PRK13699 putative methylase; P 68.7 3.9 8.4E-05 33.9 2.3 19 205-223 52-70 (227)
335 PF02005 TRM: N2,N2-dimethylgu 68.5 4.7 0.0001 36.2 3.0 80 141-223 49-152 (377)
336 PF03514 GRAS: GRAS domain fam 67.8 17 0.00037 32.5 6.4 92 130-222 100-241 (374)
337 cd08255 2-desacetyl-2-hydroxye 66.9 30 0.00066 28.6 7.5 78 140-222 96-187 (277)
338 PF11899 DUF3419: Protein of u 66.8 9 0.0002 34.4 4.4 45 124-171 21-68 (380)
339 PLN02740 Alcohol dehydrogenase 66.4 21 0.00045 31.6 6.6 79 140-223 197-298 (381)
340 COG1867 TRM1 N2,N2-dimethylgua 66.1 8.6 0.00019 34.3 4.0 78 142-223 53-152 (380)
341 TIGR02825 B4_12hDH leukotriene 65.4 54 0.0012 27.9 8.9 78 140-223 137-235 (325)
342 cd08239 THR_DH_like L-threonin 65.1 19 0.00041 30.9 6.0 78 141-223 163-260 (339)
343 PRK10309 galactitol-1-phosphat 63.4 23 0.0005 30.6 6.3 79 140-223 159-258 (347)
344 PLN03154 putative allyl alcoho 62.9 57 0.0012 28.4 8.7 78 140-223 157-256 (348)
345 cd08294 leukotriene_B4_DH_like 61.9 63 0.0014 27.3 8.7 77 140-222 142-238 (329)
346 PLN02827 Alcohol dehydrogenase 61.7 12 0.00026 33.2 4.2 79 140-223 192-293 (378)
347 cd05278 FDH_like Formaldehyde 61.0 14 0.00031 31.6 4.5 78 140-222 166-264 (347)
348 COG3129 Predicted SAM-dependen 60.8 21 0.00046 30.1 5.1 61 141-201 78-165 (292)
349 TIGR03201 dearomat_had 6-hydro 60.5 12 0.00026 32.6 4.0 79 140-223 165-270 (349)
350 PF01861 DUF43: Protein of unk 59.6 37 0.00081 28.6 6.5 79 141-219 44-142 (243)
351 PF05430 Methyltransf_30: S-ad 59.5 9.7 0.00021 28.6 2.7 49 174-222 34-87 (124)
352 PF06016 Reovirus_L2: Reovirus 59.2 26 0.00056 36.2 6.3 80 141-220 822-920 (1289)
353 PF04072 LCM: Leucine carboxyl 59.1 67 0.0014 25.3 7.8 79 130-208 67-176 (183)
354 cd08261 Zn_ADH7 Alcohol dehydr 59.1 31 0.00066 29.6 6.2 78 140-222 158-255 (337)
355 cd05285 sorbitol_DH Sorbitol d 58.9 47 0.001 28.6 7.4 78 140-222 161-262 (343)
356 COG1565 Uncharacterized conser 58.4 21 0.00046 31.9 5.0 30 141-170 77-119 (370)
357 cd08285 NADP_ADH NADP(H)-depen 57.5 36 0.00079 29.4 6.5 78 140-222 165-263 (351)
358 COG2933 Predicted SAM-dependen 56.6 21 0.00046 30.7 4.5 59 140-198 210-279 (358)
359 PF07101 DUF1363: Protein of u 55.9 4.2 9E-05 29.1 0.2 14 145-158 6-19 (124)
360 cd08231 MDR_TM0436_like Hypoth 54.8 1.1E+02 0.0023 26.6 9.0 31 188-223 248-278 (361)
361 cd08295 double_bond_reductase_ 53.2 37 0.00081 29.2 5.8 78 140-223 150-249 (338)
362 PF00145 DNA_methylase: C-5 cy 52.9 8.1 0.00018 32.9 1.6 52 144-196 2-68 (335)
363 PRK09489 rsmC 16S ribosomal RN 52.0 53 0.0012 29.0 6.6 91 130-223 9-110 (342)
364 cd08293 PTGR2 Prostaglandin re 51.3 1.1E+02 0.0023 26.2 8.4 74 143-222 156-251 (345)
365 cd08300 alcohol_DH_class_III c 51.2 50 0.0011 28.9 6.4 79 140-223 185-286 (368)
366 TIGR00936 ahcY adenosylhomocys 50.9 53 0.0012 29.8 6.5 74 141-222 194-279 (406)
367 KOG2422 Uncharacterized conser 50.3 8.6 0.00019 36.3 1.4 43 6-48 92-135 (665)
368 KOG2352 Predicted spermine/spe 50.1 29 0.00062 32.2 4.6 83 141-223 295-414 (482)
369 PF14740 DUF4471: Domain of un 49.9 12 0.00027 32.3 2.2 32 187-223 220-252 (289)
370 PLN02494 adenosylhomocysteinas 49.7 33 0.00071 31.9 5.0 89 130-222 242-338 (477)
371 KOG3924 Putative protein methy 48.9 29 0.00062 31.4 4.3 81 140-222 191-305 (419)
372 COG0031 CysK Cysteine synthase 47.8 88 0.0019 27.3 7.1 74 143-222 170-262 (300)
373 TIGR02818 adh_III_F_hyde S-(hy 46.6 54 0.0012 28.7 5.9 79 140-223 184-285 (368)
374 TIGR00692 tdh L-threonine 3-de 46.1 56 0.0012 28.0 5.8 31 187-222 228-258 (340)
375 PRK05396 tdh L-threonine 3-deh 45.8 57 0.0012 28.0 5.8 78 141-223 163-261 (341)
376 cd08263 Zn_ADH10 Alcohol dehyd 45.8 74 0.0016 27.7 6.6 31 187-222 254-284 (367)
377 PF01558 POR: Pyruvate ferredo 45.7 31 0.00067 26.9 3.8 30 187-223 55-84 (173)
378 cd08278 benzyl_alcohol_DH Benz 45.7 38 0.00083 29.6 4.8 78 140-223 185-283 (365)
379 cd08277 liver_alcohol_DH_like 45.6 63 0.0014 28.2 6.1 79 140-223 183-284 (365)
380 cd08241 QOR1 Quinone oxidoredu 45.4 1.1E+02 0.0023 25.3 7.4 77 140-222 138-235 (323)
381 PLN02178 cinnamyl-alcohol dehy 44.9 49 0.0011 29.3 5.3 76 141-223 178-271 (375)
382 TIGR00675 dcm DNA-methyltransf 44.8 19 0.0004 31.4 2.6 51 145-196 1-66 (315)
383 cd08236 sugar_DH NAD(P)-depend 44.6 1.4E+02 0.003 25.5 8.0 78 140-222 158-255 (343)
384 TIGR02819 fdhA_non_GSH formald 44.5 1.2E+02 0.0026 27.1 7.8 36 188-223 253-297 (393)
385 cd05281 TDH Threonine dehydrog 44.0 1.4E+02 0.0029 25.6 7.9 31 188-223 230-260 (341)
386 PRK05476 S-adenosyl-L-homocyst 43.8 35 0.00076 31.2 4.2 74 141-222 211-296 (425)
387 COG3315 O-Methyltransferase in 43.5 1.4E+02 0.0031 25.7 7.8 81 142-222 93-206 (297)
388 TIGR00518 alaDH alanine dehydr 43.5 19 0.00042 32.1 2.5 82 141-222 166-264 (370)
389 PF10237 N6-adenineMlase: Prob 42.6 1.6E+02 0.0036 23.0 9.4 93 130-223 13-121 (162)
390 PRK08306 dipicolinate synthase 42.6 53 0.0011 28.3 5.0 77 141-222 151-238 (296)
391 cd08298 CAD2 Cinnamyl alcohol 42.6 2.1E+02 0.0045 24.2 9.3 76 141-223 167-254 (329)
392 cd08240 6_hydroxyhexanoate_dh_ 41.5 1E+02 0.0022 26.5 6.8 77 141-222 175-271 (350)
393 PRK06249 2-dehydropantoate 2-r 41.3 1.3E+02 0.0029 25.8 7.4 33 188-222 71-103 (313)
394 PLN02514 cinnamyl-alcohol dehy 40.7 96 0.0021 27.0 6.5 30 189-223 244-273 (357)
395 PRK06274 indolepyruvate oxidor 39.2 93 0.002 24.7 5.7 30 187-223 65-94 (197)
396 PTZ00075 Adenosylhomocysteinas 39.1 48 0.001 30.8 4.4 74 141-222 253-338 (476)
397 PRK12480 D-lactate dehydrogena 39.0 44 0.00095 29.3 4.0 81 141-222 145-231 (330)
398 cd08296 CAD_like Cinnamyl alco 38.8 61 0.0013 27.8 4.9 78 140-222 162-256 (333)
399 KOG2811 Uncharacterized conser 38.6 60 0.0013 29.2 4.7 20 141-160 182-201 (420)
400 cd08301 alcohol_DH_plants Plan 38.4 1.3E+02 0.0028 26.3 6.9 79 140-223 186-287 (369)
401 COG0416 PlsX Fatty acid/phosph 38.3 30 0.00064 30.5 2.8 24 176-199 209-232 (338)
402 cd05213 NAD_bind_Glutamyl_tRNA 38.1 62 0.0013 28.0 4.8 81 141-223 177-270 (311)
403 COG4017 Uncharacterized protei 37.8 98 0.0021 25.5 5.4 65 141-205 44-115 (254)
404 PRK10310 PTS system galactitol 37.0 1.3E+02 0.0027 21.1 5.5 24 193-216 70-93 (94)
405 PRK10458 DNA cytosine methylas 36.9 84 0.0018 29.1 5.6 29 142-170 88-120 (467)
406 cd08242 MDR_like Medium chain 36.8 1.4E+02 0.003 25.2 6.8 75 140-222 154-242 (319)
407 PRK13243 glyoxylate reductase; 36.6 36 0.00078 29.9 3.1 82 141-222 149-237 (333)
408 PF06690 DUF1188: Protein of u 36.6 2E+02 0.0044 24.2 7.2 71 130-205 31-112 (252)
409 cd08274 MDR9 Medium chain dehy 36.1 2.6E+02 0.0056 23.8 8.4 76 140-222 176-270 (350)
410 PRK15001 SAM-dependent 23S rib 35.9 1.5E+02 0.0032 26.7 6.9 92 130-223 33-140 (378)
411 COG0270 Dcm Site-specific DNA 35.8 54 0.0012 28.6 4.1 56 142-197 3-75 (328)
412 PRK05225 ketol-acid reductoiso 35.6 69 0.0015 29.7 4.8 78 141-223 35-129 (487)
413 TIGR00006 S-adenosyl-methyltra 35.5 32 0.0007 30.0 2.5 19 205-223 220-238 (305)
414 PRK15469 ghrA bifunctional gly 34.3 70 0.0015 27.8 4.5 82 141-222 135-223 (312)
415 cd08243 quinone_oxidoreductase 34.3 2.7E+02 0.0058 23.0 8.7 76 140-222 141-235 (320)
416 PF12242 Eno-Rase_NADH_b: NAD( 33.9 1.4E+02 0.0031 20.5 5.0 13 142-154 39-51 (78)
417 cd00518 H2MP Hydrogenase speci 33.8 2E+02 0.0043 21.4 9.0 83 132-221 19-110 (139)
418 KOG1227 Putative methyltransfe 33.7 39 0.00084 29.6 2.7 74 141-219 194-290 (351)
419 COG0275 Predicted S-adenosylme 32.5 40 0.00086 29.4 2.6 20 204-223 223-242 (314)
420 PRK07502 cyclohexadienyl dehyd 32.3 73 0.0016 27.3 4.3 78 143-222 7-97 (307)
421 cd08233 butanediol_DH_like (2R 31.8 76 0.0016 27.3 4.4 78 140-222 171-269 (351)
422 cd05289 MDR_like_2 alcohol deh 31.0 2.9E+02 0.0064 22.5 9.4 76 140-222 143-235 (309)
423 KOG2918 Carboxymethyl transfer 30.9 2.5E+02 0.0054 24.8 7.1 30 131-160 77-106 (335)
424 PRK00050 16S rRNA m(4)C1402 me 30.8 43 0.00093 29.1 2.6 19 205-223 216-234 (296)
425 PRK06701 short chain dehydroge 30.0 1.7E+02 0.0037 24.6 6.2 82 141-222 45-178 (290)
426 KOG0821 Predicted ribosomal RN 29.0 1.4E+02 0.003 25.2 5.1 40 130-170 40-83 (326)
427 PRK08324 short chain dehydroge 29.0 1.9E+02 0.0041 27.9 6.9 83 141-223 421-555 (681)
428 TIGR00689 rpiB_lacA_lacB sugar 28.9 69 0.0015 24.7 3.2 15 148-162 61-75 (144)
429 cd05279 Zn_ADH1 Liver alcohol 28.8 2E+02 0.0044 25.0 6.6 31 188-223 252-283 (365)
430 PF05050 Methyltransf_21: Meth 28.8 41 0.00089 25.2 1.9 24 147-170 1-33 (167)
431 cd08266 Zn_ADH_like1 Alcohol d 28.8 2.6E+02 0.0056 23.3 7.1 77 140-222 165-262 (342)
432 PF13602 ADH_zinc_N_2: Zinc-bi 28.5 19 0.00041 26.1 -0.0 33 186-222 16-48 (127)
433 cd05286 QOR2 Quinone oxidoredu 28.0 2.3E+02 0.005 23.2 6.6 77 140-222 135-232 (320)
434 PRK05708 2-dehydropantoate 2-r 27.5 3.9E+02 0.0085 22.8 8.3 78 143-222 3-101 (305)
435 PF07279 DUF1442: Protein of u 27.4 3.2E+02 0.0069 22.7 6.9 40 131-170 31-79 (218)
436 cd08282 PFDH_like Pseudomonas 27.0 2E+02 0.0043 25.2 6.2 82 141-222 176-282 (375)
437 PRK06853 indolepyruvate oxidor 26.6 79 0.0017 25.3 3.3 29 188-223 67-95 (197)
438 KOG2078 tRNA modification enzy 26.4 13 0.00027 34.0 -1.5 31 140-170 248-281 (495)
439 KOG2015 NEDD8-activating compl 26.3 1.3E+02 0.0029 26.7 4.7 36 175-212 114-150 (422)
440 PRK08410 2-hydroxyacid dehydro 26.0 1.3E+02 0.0028 26.1 4.8 79 141-222 144-229 (311)
441 PRK08622 galactose-6-phosphate 26.0 80 0.0017 25.1 3.1 15 148-162 63-77 (171)
442 PRK05786 fabG 3-ketoacyl-(acyl 25.6 3E+02 0.0064 21.8 6.7 83 141-223 4-133 (238)
443 PF01795 Methyltransf_5: MraW 25.6 36 0.00078 29.8 1.2 19 205-223 221-239 (310)
444 PTZ00354 alcohol dehydrogenase 25.6 2.4E+02 0.0052 23.6 6.3 30 187-222 208-237 (334)
445 COG5379 BtaA S-adenosylmethion 25.0 1.1E+02 0.0025 26.8 4.0 30 141-170 63-95 (414)
446 KOG2782 Putative SAM dependent 25.0 34 0.00074 28.7 0.9 41 129-170 32-77 (303)
447 PTZ00215 ribose 5-phosphate is 25.0 98 0.0021 24.1 3.4 15 148-162 67-81 (151)
448 PF07090 DUF1355: Protein of u 25.0 34 0.00074 27.3 0.9 36 188-223 66-106 (177)
449 cd08270 MDR4 Medium chain dehy 24.6 4E+02 0.0087 21.9 8.1 74 141-222 132-219 (305)
450 PRK11064 wecC UDP-N-acetyl-D-m 24.5 2E+02 0.0042 26.1 5.8 80 143-222 4-116 (415)
451 PRK06487 glycerate dehydrogena 24.3 88 0.0019 27.2 3.4 77 141-222 147-230 (317)
452 TIGR03334 IOR_beta indolepyruv 24.1 2.4E+02 0.0052 22.3 5.7 31 186-223 61-91 (189)
453 PRK15181 Vi polysaccharide bio 23.8 1.8E+02 0.004 25.1 5.4 58 142-200 15-101 (348)
454 KOG1252 Cystathionine beta-syn 23.6 1.5E+02 0.0032 26.5 4.5 37 131-170 204-249 (362)
455 TIGR01119 lacB galactose-6-pho 23.3 1E+02 0.0022 24.5 3.2 15 147-161 62-76 (171)
456 COG0541 Ffh Signal recognition 23.3 1.9E+02 0.0042 26.6 5.4 83 141-223 99-219 (451)
457 TIGR02175 PorC_KorC 2-oxoacid: 23.1 2.2E+02 0.0048 22.2 5.3 31 186-223 63-95 (177)
458 KOG2360 Proliferation-associat 23.0 74 0.0016 28.8 2.6 69 134-202 206-301 (413)
459 PLN02928 oxidoreductase family 22.8 87 0.0019 27.7 3.1 82 141-222 158-259 (347)
460 COG0287 TyrA Prephenate dehydr 22.8 2.1E+02 0.0046 24.5 5.4 78 143-222 4-95 (279)
461 PRK08265 short chain dehydroge 21.9 3.6E+02 0.0078 22.0 6.6 59 141-199 5-90 (261)
462 PRK08621 galactose-6-phosphate 21.8 1E+02 0.0022 23.7 2.9 8 150-157 63-70 (142)
463 cd05282 ETR_like 2-enoyl thioe 21.8 3.7E+02 0.0081 22.3 6.8 29 188-222 206-234 (323)
464 PF03721 UDPG_MGDP_dh_N: UDP-g 21.8 79 0.0017 25.2 2.4 20 204-223 99-118 (185)
465 PF02826 2-Hacid_dh_C: D-isome 21.7 46 0.001 26.1 1.0 79 141-222 35-124 (178)
466 COG2813 RsmC 16S RNA G1207 met 21.6 1.1E+02 0.0024 26.7 3.4 35 189-223 37-71 (300)
467 PF08274 PhnA_Zn_Ribbon: PhnA 21.6 37 0.0008 18.9 0.3 21 76-96 4-24 (30)
468 PRK06436 glycerate dehydrogena 21.5 1.3E+02 0.0029 26.0 4.0 79 141-222 121-206 (303)
469 cd08238 sorbose_phosphate_red 21.5 4.9E+02 0.011 23.1 7.8 78 140-222 174-285 (410)
470 COG1052 LdhA Lactate dehydroge 21.4 65 0.0014 28.3 2.0 82 141-222 145-233 (324)
471 PRK08312 putative indolepyruva 21.3 2.4E+02 0.0051 26.6 5.7 33 185-223 81-115 (510)
472 PF09538 FYDLN_acid: Protein o 21.1 44 0.00096 24.5 0.7 29 71-99 6-34 (108)
473 cd05283 CAD1 Cinnamyl alcohol 21.0 2.4E+02 0.0052 24.0 5.5 30 188-222 231-260 (337)
474 PRK06522 2-dehydropantoate 2-r 20.9 1.9E+02 0.0042 24.2 4.8 33 188-222 65-97 (304)
475 cd08291 ETR_like_1 2-enoyl thi 20.8 4.7E+02 0.01 22.0 7.3 30 188-223 211-240 (324)
476 PRK07806 short chain dehydroge 20.5 4.5E+02 0.0097 21.0 7.3 82 141-222 5-131 (248)
477 cd01842 SGNH_hydrolase_like_5 20.3 1.9E+02 0.0042 23.2 4.3 38 185-222 46-96 (183)
478 PRK07417 arogenate dehydrogena 20.3 1.2E+02 0.0026 25.6 3.3 76 144-221 2-87 (279)
479 PLN02256 arogenate dehydrogena 20.2 2.6E+02 0.0057 24.1 5.5 77 141-221 35-123 (304)
480 PF08468 MTS_N: Methyltransfer 20.1 69 0.0015 24.9 1.7 88 132-223 4-103 (155)
481 COG1062 AdhC Zn-dependent alco 20.1 3.2E+02 0.0069 24.5 5.9 78 141-223 185-283 (366)
No 1
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=100.00 E-value=6.1e-40 Score=269.25 Aligned_cols=222 Identities=42% Similarity=0.775 Sum_probs=184.6
Q ss_pred ccchhhHHHhhhhccCCCCCCchhhhhhhhhhhh----hh------hhhcccccCCcchhhcccccchhhccCCCCCchH
Q 027441 2 KEGESRKRKRRRRHNSNSKPQDQESYQSKSTAKT----TA------KKHKQDTVKNNEQQYEHHQTSAAASAKRPKPSSF 71 (223)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (223)
++++++|.|+|++.++|.+.++...+.+...... .+ .+++++-...++.+..+-+..+++.......+++
T Consensus 31 k~~~~kKkkKRkk~~rkl~~~k~A~~~e~v~~~p~g~~ak~~~~~n~~kk~r~~~kkkk~~p~~~a~~~~~t~~~~~~~l 110 (325)
T KOG3045|consen 31 KTKEEKKKKKRKKGERKLKAKKAAELKENVEEPPLGSEAKSSPKENSKKKRRNETKKKKEKPPEKAGAAAETEKTEATDL 110 (325)
T ss_pred ccchhhhhhhhhhHHHhhhhhhhhhhhcCccCCCCcccCCCCCcccchhhccCcccccccCChhhhccccchhhhcccCH
Confidence 4678899999999988888887766665443331 11 1111111111111222222222233334578999
Q ss_pred HHHHHchhcccccccccccccccCchHHHHHhhcChHHHHHHHHhHHhhhccCCCchHHHHHHHHhccCCCCeEEEECCc
Q 027441 72 LDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCG 151 (223)
Q Consensus 72 ~~~~~~~~~~~~fr~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~l~~~~~~~~ILDiGcG 151 (223)
++.|...+-|++|||+|+++|++.+.+++.+|..++..|+.||.||+.++..||.+|++.|+++|...+...+|.|+|||
T Consensus 111 ~~km~~rL~ggrFR~lNEqLYt~~s~~A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCG 190 (325)
T KOG3045|consen 111 QAKMKKRLDGGRFRYLNEQLYTGTSSEAFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCG 190 (325)
T ss_pred HHHHHHhhcccceehhhhhhccCCcHHHHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998788999999999
Q ss_pred chHHHHHhcCceEEEecCCCCCcEEEccCCCCCCCCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 152 DARLAKSVKNKVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 152 ~G~~a~~la~~v~gvDis~~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
.+.++......|+++|+.+.+.+++.||+.++|+++++.|++|+|.+||.+|+..++.|++|+|+|||.|+|
T Consensus 191 EakiA~~~~~kV~SfDL~a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~I 262 (325)
T KOG3045|consen 191 EAKIASSERHKVHSFDLVAVNERVIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYI 262 (325)
T ss_pred hhhhhhccccceeeeeeecCCCceeeccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEE
Confidence 999998777899999999999999999999999999999999999999999999999999999999999986
No 2
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=100.00 E-value=8.8e-36 Score=239.67 Aligned_cols=154 Identities=60% Similarity=1.084 Sum_probs=123.8
Q ss_pred hHHHHHHchhcccccccccccccccCchHHHHHhhcChHHHHHHHHhHHhhhccCCCchHHHHHHHHhccCCCCeEEEEC
Q 027441 70 SFLDKMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFG 149 (223)
Q Consensus 70 ~~~~~~~~~~~~~~fr~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~l~~~~~~~~ILDiG 149 (223)
.+|++|+.++.|++||++||++|++++.++.++|..++++|+.||.||++++..||.+|++.|+++|...++...|.|+|
T Consensus 1 ~L~~~m~~kL~gsrFR~lNE~LYT~~s~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~G 80 (219)
T PF05148_consen 1 SLQEKMREKLSGSRFRWLNEQLYTTSSEEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFG 80 (219)
T ss_dssp -------HHHHHHHHHHHHHHHHHS-HHHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES
T ss_pred ChHHHHHHHcccCchHHHHHhHhcCCHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECC
Confidence 36889999999999999999999999999999999999999999999999999999999999999999886778999999
Q ss_pred CcchHHHHHhcC--ceEEEecCCCCCcEEEccCCCCCCCCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 150 CGDARLAKSVKN--KVFSFDLVSNDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 150 cG~G~~a~~la~--~v~gvDis~~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
||.+.++..+.. .|+.+|+.+.+..++++|+.++|++++++|++|+|.+||++|+..+|.|+.|+|||||.|+|
T Consensus 81 CGdA~la~~~~~~~~V~SfDLva~n~~Vtacdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~I 156 (219)
T PF05148_consen 81 CGDAKLAKAVPNKHKVHSFDLVAPNPRVTACDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKI 156 (219)
T ss_dssp -TT-HHHHH--S---EEEEESS-SSTTEEES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEE
T ss_pred CchHHHHHhcccCceEEEeeccCCCCCEEEecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEE
Confidence 999999998874 59999999999999999999999999999999999999999999999999999999999986
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.83 E-value=3e-20 Score=154.46 Aligned_cols=92 Identities=24% Similarity=0.436 Sum_probs=81.4
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCce
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSV 190 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sf 190 (223)
.+...+... ++.+|||||||||.++..++ .+|+|+|+|+ .++.|+.+|++++||+|++|
T Consensus 42 ~~i~~~~~~-~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sF 120 (238)
T COG2226 42 ALISLLGIK-PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSF 120 (238)
T ss_pred HHHHhhCCC-CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCcc
Confidence 344444443 78999999999999999987 4899999997 23779999999999999999
Q ss_pred eEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 191 DVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 191 D~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
|+|+++++|+++ |++.+|.|++|||||||.+++
T Consensus 121 D~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~v 154 (238)
T COG2226 121 DAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLV 154 (238)
T ss_pred CEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEE
Confidence 999999999999 999999999999999998874
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.80 E-value=1.3e-19 Score=151.10 Aligned_cols=120 Identities=22% Similarity=0.364 Sum_probs=69.2
Q ss_pred HHHHhhcChHHHHHHHHhHHhh-hccCCCchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC-
Q 027441 99 ALDYFNENPALFDMYHSGYQEQ-MSHWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS- 170 (223)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~- 170 (223)
....|+.-+..||....-..-. ...|.. .+.+.+... ++.+|||+|||||.++..++ .+|+|+|+|+
T Consensus 9 v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~----~~~~~~~~~-~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ 83 (233)
T PF01209_consen 9 VRKMFDRIAPRYDRMNDLLSFGQDRRWRR----KLIKLLGLR-PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPG 83 (233)
T ss_dssp ----------------------------S----HHHHHHT---S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HH
T ss_pred HHHHHHHHHHHhCCCccccCCcHHHHHHH----HHHhccCCC-CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHH
Confidence 3355666666666543221111 112433 334444433 67899999999999998876 3799999997
Q ss_pred --------------CCCcEEEccCCCCCCCCCceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 171 --------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 171 --------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
.++.++++|++++|+++++||+|+++++++.+ |+..+|.|++|+|||||.|+|
T Consensus 84 ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 84 MLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVI 151 (233)
T ss_dssp HHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEE
Confidence 37889999999999999999999999999988 999999999999999999875
No 5
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.75 E-value=1.5e-18 Score=123.34 Aligned_cols=78 Identities=31% Similarity=0.427 Sum_probs=68.1
Q ss_pred EEECCcchHHHHHhc----CceEEEecCC------------CCCcEEEccCCCCCCCCCceeEEEEcccccCC-CHHHHH
Q 027441 146 ADFGCGDARLAKSVK----NKVFSFDLVS------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYL 208 (223)
Q Consensus 146 LDiGcG~G~~a~~la----~~v~gvDis~------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-d~~~~l 208 (223)
||+|||+|..+..++ .+|+++|+++ ..+.+..+|+.++|+++++||+|++..++||+ ++..++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l 80 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAAL 80 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHHH
Confidence 899999999999887 4699999997 34458999999999999999999999999999 889999
Q ss_pred HHHHHccCCCCEEEc
Q 027441 209 QEAQRVLKPRGEEQI 223 (223)
Q Consensus 209 ~e~~rvLkpgG~lvi 223 (223)
.++.|+|||||+++|
T Consensus 81 ~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 81 REIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHEEEEEEEEE
T ss_pred HHHHHHcCcCeEEeC
Confidence 999999999999986
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.75 E-value=1.5e-17 Score=141.05 Aligned_cols=84 Identities=26% Similarity=0.371 Sum_probs=75.2
Q ss_pred CCCCeEEEECCcchHHHHHhc------CceEEEecCC------------------CCCcEEEccCCCCCCCCCceeEEEE
Q 027441 140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS------------------NDPSVIACDMSNTPLNSSSVDVAVF 195 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~------------------~~~~~~~~d~~~lp~~~~sfD~Vi~ 195 (223)
.++.+|||||||+|.++..++ .+|+|+|+|+ .++.++.+|+..+|+++++||+|++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 151 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM 151 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence 367899999999999887765 3799999996 1467889999999999999999999
Q ss_pred cccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 196 CLSLMGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 196 ~~~l~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
.+++||+ ++..++.++.|+|||||.|+|
T Consensus 152 ~~~l~~~~d~~~~l~ei~rvLkpGG~l~i 180 (261)
T PLN02233 152 GYGLRNVVDRLKAMQEMYRVLKPGSRVSI 180 (261)
T ss_pred ecccccCCCHHHHHHHHHHHcCcCcEEEE
Confidence 9999999 999999999999999999875
No 7
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.71 E-value=8e-17 Score=135.53 Aligned_cols=93 Identities=24% Similarity=0.391 Sum_probs=80.1
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC----------CCCcEEEccCCCCCCCCCceeEEEEc
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFC 196 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~ 196 (223)
+.+++.+... +..+|||+|||+|.++..++ .+|+++|+|+ ....++.+|++.+|+++++||+|++.
T Consensus 32 ~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~ 110 (251)
T PRK10258 32 DALLAMLPQR-KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSN 110 (251)
T ss_pred HHHHHhcCcc-CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEEC
Confidence 4555555543 56789999999999988886 5899999997 23468899999999999999999999
Q ss_pred ccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 197 LSLMGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 197 ~~l~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
.+++|+ ++..+|.++.++|+|||.|++
T Consensus 111 ~~l~~~~d~~~~l~~~~~~Lk~gG~l~~ 138 (251)
T PRK10258 111 LAVQWCGNLSTALRELYRVVRPGGVVAF 138 (251)
T ss_pred chhhhcCCHHHHHHHHHHHcCCCeEEEE
Confidence 999998 999999999999999999975
No 8
>PLN02244 tocopherol O-methyltransferase
Probab=99.71 E-value=8.3e-17 Score=141.42 Aligned_cols=83 Identities=24% Similarity=0.303 Sum_probs=75.9
Q ss_pred CCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEccccc
Q 027441 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM 200 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~ 200 (223)
++.+|||||||+|.++..++ .+|+|+|+++ .++.++++|+.++|+++++||+|++..+++
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~ 197 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGE 197 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchh
Confidence 56899999999999988876 4899999996 257889999999999999999999999999
Q ss_pred CC-CHHHHHHHHHHccCCCCEEEc
Q 027441 201 GI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 201 ~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
|+ |...++.++.|+|+|||.|+|
T Consensus 198 h~~d~~~~l~e~~rvLkpGG~lvi 221 (340)
T PLN02244 198 HMPDKRKFVQELARVAAPGGRIII 221 (340)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEE
Confidence 99 999999999999999999985
No 9
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.70 E-value=7.5e-17 Score=136.17 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=78.6
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC--------CCCcEEEccCCCCCCCCCceeEEEEc
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFC 196 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~ 196 (223)
..+++.+... ++.+|||||||+|.++..++ .+|+|+|+|+ .++.++.+|+..++ ++++||+|++.
T Consensus 19 ~~ll~~l~~~-~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-~~~~fD~v~~~ 96 (255)
T PRK14103 19 YDLLARVGAE-RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWK-PKPDTDVVVSN 96 (255)
T ss_pred HHHHHhCCCC-CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCC-CCCCceEEEEe
Confidence 3455555543 67899999999999998886 3799999997 46788999998875 56799999999
Q ss_pred ccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 197 LSLMGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 197 ~~l~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
.++||+ ++..++.++.++|+|||.|+|
T Consensus 97 ~~l~~~~d~~~~l~~~~~~LkpgG~l~~ 124 (255)
T PRK14103 97 AALQWVPEHADLLVRWVDELAPGSWIAV 124 (255)
T ss_pred hhhhhCCCHHHHHHHHHHhCCCCcEEEE
Confidence 999999 899999999999999999975
No 10
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.68 E-value=8.1e-17 Score=140.10 Aligned_cols=83 Identities=16% Similarity=0.263 Sum_probs=75.1
Q ss_pred CCCeEEEECCcchHHHHHhc---CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcccccC
Q 027441 141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG 201 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~ 201 (223)
++.+|||||||+|.++..++ .+|+|+|+++ .++.++++|++++|+.+++||+|++..+++|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 45699999999999999887 4799999996 1567888999999888889999999999999
Q ss_pred C-CHHHHHHHHHHccCCCCEEEc
Q 027441 202 I-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 202 ~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
+ |+..++.++.++|+|||.|+|
T Consensus 211 v~d~~~~L~~l~r~LkPGG~lii 233 (322)
T PLN02396 211 VANPAEFCKSLSALTIPNGATVL 233 (322)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEE
Confidence 9 999999999999999999985
No 11
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.68 E-value=7e-17 Score=137.68 Aligned_cols=139 Identities=16% Similarity=0.347 Sum_probs=94.3
Q ss_pred HHchhcccccccccccccccCchHHHHHhh------------------cChHHHHHHHHhHHhhhccCCCchHHHHHHHH
Q 027441 75 MRARLSGGHFRMLNEKLYTCTGKEALDYFN------------------ENPALFDMYHSGYQEQMSHWPELPVNIIVKWL 136 (223)
Q Consensus 75 ~~~~~~~~~fr~~~e~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~l 136 (223)
+.||.|++.+.. ....+.|+..+.++... .+..++... ..|... .......+.+...+
T Consensus 3 ~~CP~C~~~l~~-~~~~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~d~~~~~~ar-~~fl~~--g~y~~l~~~i~~~l 78 (272)
T PRK11088 3 YQCPLCHQPLTL-EENSWICPQNHQFDCAKEGYVNLLPVQHKRSKDPGDNKEMMQAR-RAFLDA--GHYQPLRDAVANLL 78 (272)
T ss_pred ccCCCCCcchhc-CCCEEEcCCCCCCccccCceEEeccccccCCCCCCcCHHHHHHH-HHHHHC--CChHHHHHHHHHHH
Confidence 689999999854 45677787776663332 122222211 111111 11111223443444
Q ss_pred hcc--CCCCeEEEECCcchHHHHHhcC--------ceEEEecCC----------CCCcEEEccCCCCCCCCCceeEEEEc
Q 027441 137 KDH--SPSLVIADFGCGDARLAKSVKN--------KVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFC 196 (223)
Q Consensus 137 ~~~--~~~~~ILDiGcG~G~~a~~la~--------~v~gvDis~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~ 196 (223)
... ....+|||+|||+|.++..++. .|+|+|+|+ .++.+.++|+.++|+++++||+|++.
T Consensus 79 ~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~ 158 (272)
T PRK11088 79 AERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRI 158 (272)
T ss_pred HHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEe
Confidence 322 2447899999999998887751 579999997 46778999999999999999999987
Q ss_pred ccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 197 LSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 197 ~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
++ +..+.++.|+|+|||+|++
T Consensus 159 ~~------~~~~~e~~rvLkpgG~li~ 179 (272)
T PRK11088 159 YA------PCKAEELARVVKPGGIVIT 179 (272)
T ss_pred cC------CCCHHHHHhhccCCCEEEE
Confidence 65 4457899999999999975
No 12
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.66 E-value=6.1e-16 Score=128.38 Aligned_cols=92 Identities=20% Similarity=0.359 Sum_probs=78.2
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCCCCCCc
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSS 189 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~s 189 (223)
.++..+... ++.+|||+|||+|.++..++ .+|+|+|+++ .++.++.+|+..+++++++
T Consensus 36 ~~l~~l~~~-~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (231)
T TIGR02752 36 DTMKRMNVQ-AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS 114 (231)
T ss_pred HHHHhcCCC-CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC
Confidence 445555433 67899999999999888775 3799999996 2567888999999988899
Q ss_pred eeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 190 VDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 190 fD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
||+|++.++++|+ ++..++.++.++|+|||.|++
T Consensus 115 fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 115 FDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred ccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEE
Confidence 9999999999998 889999999999999999874
No 13
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.66 E-value=3e-16 Score=136.83 Aligned_cols=92 Identities=16% Similarity=0.214 Sum_probs=79.0
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCc
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS 189 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~s 189 (223)
+.+..++... .+.+|||||||+|.++..++ ..|+|+|+|+ .++.++.+|++++|+ +++
T Consensus 112 ~~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~ 189 (322)
T PRK15068 112 DRVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKA 189 (322)
T ss_pred HHHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCC
Confidence 4455566544 57899999999999988876 3699999986 246788899999998 789
Q ss_pred eeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 190 VDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 190 fD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
||+|+|..+++|. ++..+|.+++++|+|||.|+|
T Consensus 190 FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl 224 (322)
T PRK15068 190 FDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVL 224 (322)
T ss_pred cCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEE
Confidence 9999999999999 899999999999999999975
No 14
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.66 E-value=7.4e-16 Score=127.33 Aligned_cols=93 Identities=23% Similarity=0.350 Sum_probs=79.9
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----------CceEEEecCC------------------CCCcEEEccC
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----------NKVFSFDLVS------------------NDPSVIACDM 180 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----------~~v~gvDis~------------------~~~~~~~~d~ 180 (223)
+.+...+... .+.++||++||||-++..+. .+|+++|+++ ..+.++++|+
T Consensus 90 d~~v~~L~p~-~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA 168 (296)
T KOG1540|consen 90 DMFVSKLGPG-KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA 168 (296)
T ss_pred HHhhhccCCC-CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc
Confidence 4455555544 67999999999999888775 3799999997 2367889999
Q ss_pred CCCCCCCCceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 181 SNTPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 181 ~~lp~~~~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
+.+||++++||+.++.+.+..+ +++++|+|++|||||||.|.+
T Consensus 169 E~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 169 EDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSC 212 (296)
T ss_pred ccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEE
Confidence 9999999999999999999966 999999999999999999864
No 15
>PRK05785 hypothetical protein; Provisional
Probab=99.65 E-value=5.6e-16 Score=128.81 Aligned_cols=79 Identities=20% Similarity=0.287 Sum_probs=70.4
Q ss_pred CCCeEEEECCcchHHHHHhc----CceEEEecCCC-------CCcEEEccCCCCCCCCCceeEEEEcccccCC-CHHHHH
Q 027441 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSN-------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYL 208 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~~-------~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-d~~~~l 208 (223)
++.+|||||||||.++..++ .+|+|+|+|+. ...++++|++.+|+++++||+|++.+++||+ |++.++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l 130 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVI 130 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecChhhccCCHHHHH
Confidence 46899999999999988876 37999999982 3456889999999999999999999999999 999999
Q ss_pred HHHHHccCCCC
Q 027441 209 QEAQRVLKPRG 219 (223)
Q Consensus 209 ~e~~rvLkpgG 219 (223)
.|+.|+|||.+
T Consensus 131 ~e~~RvLkp~~ 141 (226)
T PRK05785 131 AEFTRVSRKQV 141 (226)
T ss_pred HHHHHHhcCce
Confidence 99999999954
No 16
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.65 E-value=9.7e-16 Score=129.37 Aligned_cols=92 Identities=14% Similarity=0.241 Sum_probs=77.1
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC----------CCCcEEEccCCCCCCCCCceeEEE
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAV 194 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------~~~~~~~~d~~~lp~~~~sfD~Vi 194 (223)
..++..+... ++.+|||||||+|.++..++ .+|+|+|+|+ .++.+..+|+..++ ++.+||+|+
T Consensus 21 ~~ll~~~~~~-~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~ 98 (258)
T PRK01683 21 RDLLARVPLE-NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIF 98 (258)
T ss_pred HHHHhhCCCc-CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEE
Confidence 3455555433 67899999999999988876 4799999997 46778889988765 456899999
Q ss_pred EcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 195 FCLSLMGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 195 ~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
+..++||+ |+..++.++.++|+|||.|++
T Consensus 99 ~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~ 128 (258)
T PRK01683 99 ANASLQWLPDHLELFPRLVSLLAPGGVLAV 128 (258)
T ss_pred EccChhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 99999999 999999999999999999875
No 17
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.65 E-value=1.1e-16 Score=131.81 Aligned_cols=83 Identities=19% Similarity=0.334 Sum_probs=71.1
Q ss_pred CCCeEEEECCcchHHHHHhc---CceEEEecCCCC--------------CcEEEccCCCCCCCCCceeEEEEcccccCC-
Q 027441 141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVSND--------------PSVIACDMSNTPLNSSSVDVAVFCLSLMGI- 202 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~~--------------~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~- 202 (223)
++.+|||||||.|.+++.+| ..|+|+|+++.+ +++....++++....++||+|+|..+++|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 68999999999999999998 689999999833 334445555555445899999999999999
Q ss_pred CHHHHHHHHHHccCCCCEEEc
Q 027441 203 NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 203 d~~~~l~e~~rvLkpgG~lvi 223 (223)
|+..++..+.+++||||.+++
T Consensus 139 dp~~~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 139 DPESFLRACAKLVKPGGILFL 159 (243)
T ss_pred CHHHHHHHHHHHcCCCcEEEE
Confidence 999999999999999999975
No 18
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.64 E-value=2.4e-16 Score=122.81 Aligned_cols=93 Identities=23% Similarity=0.397 Sum_probs=75.3
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCCC-----CCcEEEccCCCCCCCCCceeEEEEcccccCC
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN-----DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI 202 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~-----~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~ 202 (223)
.+...+....++.+|||||||+|.++..++ .+|+|+|+++. .......+....+.++++||+|+|+.+++|+
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~ 91 (161)
T PF13489_consen 12 LLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL 91 (161)
T ss_dssp HHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESSGGGS
T ss_pred HHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHHHhhc
Confidence 333344324478999999999999999887 48999999973 3344444445566678999999999999999
Q ss_pred -CHHHHHHHHHHccCCCCEEEc
Q 027441 203 -NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 203 -d~~~~l~e~~rvLkpgG~lvi 223 (223)
|+..+|.++.++|+|||+|+|
T Consensus 92 ~d~~~~l~~l~~~LkpgG~l~~ 113 (161)
T PF13489_consen 92 PDPEEFLKELSRLLKPGGYLVI 113 (161)
T ss_dssp SHHHHHHHHHHHCEEEEEEEEE
T ss_pred ccHHHHHHHHHHhcCCCCEEEE
Confidence 899999999999999999986
No 19
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.64 E-value=6.7e-16 Score=130.42 Aligned_cols=83 Identities=24% Similarity=0.361 Sum_probs=72.8
Q ss_pred CCCeEEEECCcchHHHHHhc---CceEEEecCC----------------CCCcEEEccCCCCC-CCCCceeEEEEccccc
Q 027441 141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTP-LNSSSVDVAVFCLSLM 200 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------------~~~~~~~~d~~~lp-~~~~sfD~Vi~~~~l~ 200 (223)
++.+|||+|||+|.++..++ .+|+++|+|+ .++.++.+|+.+++ +.+++||+|++..+++
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~ 123 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLE 123 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHH
Confidence 45799999999999999887 5799999996 24578888887764 5678999999999999
Q ss_pred CC-CHHHHHHHHHHccCCCCEEEc
Q 027441 201 GI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 201 ~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
|+ ++..++.++.++|+|||+|+|
T Consensus 124 ~~~~~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 124 WVADPKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred hhCCHHHHHHHHHHHcCCCeEEEE
Confidence 99 899999999999999999974
No 20
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.63 E-value=9.8e-16 Score=130.13 Aligned_cols=93 Identities=17% Similarity=0.218 Sum_probs=79.1
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC-------------CCCcEEEccCCCCCCCCCceeE
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDV 192 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~-------------~~~~~~~~d~~~lp~~~~sfD~ 192 (223)
..++..+... ++.+|||||||+|..+..++ .+|+|+|+++ .++.+..+|+...|+++++||+
T Consensus 42 ~~~l~~l~l~-~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~ 120 (263)
T PTZ00098 42 TKILSDIELN-ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDM 120 (263)
T ss_pred HHHHHhCCCC-CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEE
Confidence 4555555433 77899999999999888775 4899999996 2477888999999999999999
Q ss_pred EEEcccccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441 193 AVFCLSLMGI---NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 193 Vi~~~~l~~~---d~~~~l~e~~rvLkpgG~lvi 223 (223)
|++..+++|+ ++..+|.++.++|+|||.|+|
T Consensus 121 V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 121 IYSRDAILHLSYADKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred EEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 9999998887 677999999999999999985
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.63 E-value=1.4e-15 Score=123.93 Aligned_cols=95 Identities=20% Similarity=0.296 Sum_probs=77.9
Q ss_pred CchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCCCCCC
Q 027441 126 ELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNS 187 (223)
Q Consensus 126 ~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp~~~ 187 (223)
..+...+++.+... ++.+|||+|||+|..+..|+ .+|+|+|+|+ .++.+.+.|+..++++
T Consensus 16 ~~~~~~l~~~l~~~-~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 93 (197)
T PRK11207 16 TRTHSEVLEAVKVV-KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD- 93 (197)
T ss_pred CCChHHHHHhcccC-CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-
Confidence 34445667777655 56899999999999999998 4799999997 2466778888887774
Q ss_pred CceeEEEEcccccCCC---HHHHHHHHHHccCCCCEEE
Q 027441 188 SSVDVAVFCLSLMGIN---FPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 188 ~sfD~Vi~~~~l~~~d---~~~~l~e~~rvLkpgG~lv 222 (223)
++||+|++..++||++ ...++.++.++|+|||.++
T Consensus 94 ~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 6799999999999884 5699999999999999864
No 22
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.62 E-value=3.9e-15 Score=123.20 Aligned_cols=93 Identities=28% Similarity=0.439 Sum_probs=78.3
Q ss_pred HHHHHHhcc--CCCCeEEEECCcchHHHHHhc-----CceEEEecCC-----------CCCcEEEccCCCCCCCCCceeE
Q 027441 131 IIVKWLKDH--SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-----------NDPSVIACDMSNTPLNSSSVDV 192 (223)
Q Consensus 131 ~i~~~l~~~--~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-----------~~~~~~~~d~~~lp~~~~sfD~ 192 (223)
.+++.+... ....+|||||||+|.++..++ .+++++|+++ .++.++.+|+...|+++++||+
T Consensus 22 ~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 101 (240)
T TIGR02072 22 RLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDL 101 (240)
T ss_pred HHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeE
Confidence 344444432 234789999999999888886 3579999996 3568899999999988999999
Q ss_pred EEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 193 AVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 193 Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
|++..++||+ ++..++.++.++|+|||.|++
T Consensus 102 vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~ 133 (240)
T TIGR02072 102 IVSNLALQWCDDLSQALSELARVLKPGGLLAF 133 (240)
T ss_pred EEEhhhhhhccCHHHHHHHHHHHcCCCcEEEE
Confidence 9999999999 999999999999999999975
No 23
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.61 E-value=1.2e-15 Score=119.05 Aligned_cols=82 Identities=27% Similarity=0.431 Sum_probs=72.8
Q ss_pred CCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCC--CCCCceeEEEEcc
Q 027441 141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP--LNSSSVDVAVFCL 197 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~~ 197 (223)
.+.+|||+|||+|.++..++ .+++|+|+++ .++.|.++|+.+++ ++ ..||+|++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 56899999999999888877 4799999997 46899999999987 65 8999999999
Q ss_pred cccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 198 SLMGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 198 ~l~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
+++|+ ++..++.++.++|++||.+++
T Consensus 82 ~l~~~~~~~~~l~~~~~~lk~~G~~i~ 108 (152)
T PF13847_consen 82 VLHHFPDPEKVLKNIIRLLKPGGILII 108 (152)
T ss_dssp TGGGTSHHHHHHHHHHHHEEEEEEEEE
T ss_pred chhhccCHHHHHHHHHHHcCCCcEEEE
Confidence 99999 788999999999999999985
No 24
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.61 E-value=1.7e-15 Score=131.32 Aligned_cols=92 Identities=14% Similarity=0.115 Sum_probs=75.0
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCc
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS 189 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~s 189 (223)
+.++.++... ++.+|||||||+|.++..++ ..|+|+|+|+ ..+.+..++++.+|.. .+
T Consensus 111 ~~~l~~l~~~-~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~ 188 (314)
T TIGR00452 111 DRVLPHLSPL-KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YA 188 (314)
T ss_pred HHHHHhcCCC-CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CC
Confidence 3455555444 67899999999999887765 3699999987 1345667788888764 58
Q ss_pred eeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 190 VDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 190 fD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
||+|+|..+++|+ ++..+|.+++++|+|||.|+|
T Consensus 189 FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvl 223 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVL 223 (314)
T ss_pred cCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEE
Confidence 9999999999999 899999999999999999985
No 25
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.60 E-value=3.8e-15 Score=121.13 Aligned_cols=95 Identities=20% Similarity=0.267 Sum_probs=75.5
Q ss_pred chHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCCC--------------CCcEEEccCCCCCCCCCc
Q 027441 127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN--------------DPSVIACDMSNTPLNSSS 189 (223)
Q Consensus 127 ~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~--------------~~~~~~~d~~~lp~~~~s 189 (223)
.....+...+... ++.+|||+|||+|.++..++ ..|+|+|+|+. .+.+..+|+...+++ .+
T Consensus 17 ~~~~~l~~~~~~~-~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~ 94 (195)
T TIGR00477 17 TTHSAVREAVKTV-APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-ED 94 (195)
T ss_pred CchHHHHHHhccC-CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CC
Confidence 3345666776655 46799999999999999987 47999999971 345666777666664 57
Q ss_pred eeEEEEcccccCCC---HHHHHHHHHHccCCCCEEEc
Q 027441 190 VDVAVFCLSLMGIN---FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 190 fD~Vi~~~~l~~~d---~~~~l~e~~rvLkpgG~lvi 223 (223)
||+|+++.++||++ .+.++.++.++|+|||+++|
T Consensus 95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 95 YDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 99999999999883 46899999999999998553
No 26
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.60 E-value=4.3e-15 Score=135.85 Aligned_cols=92 Identities=23% Similarity=0.258 Sum_probs=78.4
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeE
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDV 192 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~ 192 (223)
.+++.+.. .++.+|||||||+|.++..++ .+|+|+|+|+ .++.|..+|+..+++++++||+
T Consensus 257 ~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 335 (475)
T PLN02336 257 EFVDKLDL-KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDV 335 (475)
T ss_pred HHHHhcCC-CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEE
Confidence 34444432 367899999999999887776 4799999995 2467889999999988899999
Q ss_pred EEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 193 AVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 193 Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
|+|..+++|+ ++..++.+++|+|+|||.|+|
T Consensus 336 I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i 367 (475)
T PLN02336 336 IYSRDTILHIQDKPALFRSFFKWLKPGGKVLI 367 (475)
T ss_pred EEECCcccccCCHHHHHHHHHHHcCCCeEEEE
Confidence 9999999999 999999999999999999985
No 27
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.58 E-value=7.2e-15 Score=128.57 Aligned_cols=84 Identities=23% Similarity=0.243 Sum_probs=74.6
Q ss_pred CCCCeEEEECCcchHHHHHhc-----CceEEEecCC------------CCCcEEEccCCCCCCCCCceeEEEEcccccCC
Q 027441 140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI 202 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~ 202 (223)
.++.+|||||||+|.++..++ .+|+++|+++ .++.++.+|++.+|+++++||+|+++.+++|+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 356899999999999877765 4799999986 35778899999999999999999999999988
Q ss_pred -CHHHHHHHHHHccCCCCEEEc
Q 027441 203 -NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 203 -d~~~~l~e~~rvLkpgG~lvi 223 (223)
++..+|.++.|+|+|||.|+|
T Consensus 192 ~d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 192 PDPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred CCHHHHHHHHHHhcCCCcEEEE
Confidence 889999999999999999864
No 28
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.57 E-value=4.7e-15 Score=109.17 Aligned_cols=82 Identities=23% Similarity=0.409 Sum_probs=67.9
Q ss_pred CCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccC-CCCCCCCCceeEEEEcc-
Q 027441 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDM-SNTPLNSSSVDVAVFCL- 197 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~-~~lp~~~~sfD~Vi~~~- 197 (223)
|+.+|||||||+|.++..++ .+|+|+|+++ .++.++.+|+ ..... ...||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 56899999999999988887 5799999997 5788999999 33333 35699999999
Q ss_pred cccCC----CHHHHHHHHHHccCCCCEEEc
Q 027441 198 SLMGI----NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 198 ~l~~~----d~~~~l~e~~rvLkpgG~lvi 223 (223)
.++++ +...++..+.+.|+|||+|+|
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 56644 346999999999999999986
No 29
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.57 E-value=1.7e-15 Score=125.72 Aligned_cols=79 Identities=23% Similarity=0.351 Sum_probs=65.9
Q ss_pred CCeEEEECCcchHHHHHhc---CceEEEecCCC---------------------CCcEEEccCCCCCCCCCceeEEEEcc
Q 027441 142 SLVIADFGCGDARLAKSVK---NKVFSFDLVSN---------------------DPSVIACDMSNTPLNSSSVDVAVFCL 197 (223)
Q Consensus 142 ~~~ILDiGcG~G~~a~~la---~~v~gvDis~~---------------------~~~~~~~d~~~lp~~~~sfD~Vi~~~ 197 (223)
+.+|||+|||+|.+++.|+ +.|+|+|+++. .+.+...+++.+. +.||+|+|+.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHH
Confidence 3779999999999999998 68999999972 1233344444432 4499999999
Q ss_pred cccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 198 SLMGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 198 ~l~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
+++|+ |++.++..+.++|+|||.|+|
T Consensus 167 vleHV~dp~~~l~~l~~~lkP~G~lfi 193 (282)
T KOG1270|consen 167 VLEHVKDPQEFLNCLSALLKPNGRLFI 193 (282)
T ss_pred HHHHHhCHHHHHHHHHHHhCCCCceEe
Confidence 99999 999999999999999999986
No 30
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.55 E-value=1.7e-14 Score=122.79 Aligned_cols=84 Identities=25% Similarity=0.312 Sum_probs=73.4
Q ss_pred CCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEccc
Q 027441 140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLS 198 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~ 198 (223)
.++.+|||||||+|.++..++ .+|+++|+++ .++.+..+|+..+|+++++||+|++..+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 377899999999998665443 3699999986 3567888999999998899999999999
Q ss_pred ccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 199 LMGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 199 l~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
++|. +.+.++.++.++|+|||.|+|
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCCcEEEE
Confidence 9988 889999999999999999975
No 31
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.55 E-value=3.3e-14 Score=116.88 Aligned_cols=93 Identities=17% Similarity=0.201 Sum_probs=74.6
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----CCCcEEEccCCCCC--------CCCCceeE
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----NDPSVIACDMSNTP--------LNSSSVDV 192 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----~~~~~~~~d~~~lp--------~~~~sfD~ 192 (223)
.+.+.+....++.+|||||||+|.++..++ ..|+|+|+++ .++.++.+|+.+.+ +.+++||+
T Consensus 41 ~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~ 120 (209)
T PRK11188 41 EIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQV 120 (209)
T ss_pred HHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCE
Confidence 444444433467899999999999988775 3799999997 46788999998853 67789999
Q ss_pred EEEcccccCC-CH-----------HHHHHHHHHccCCCCEEEc
Q 027441 193 AVFCLSLMGI-NF-----------PNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 193 Vi~~~~l~~~-d~-----------~~~l~e~~rvLkpgG~lvi 223 (223)
|++..+.++. ++ ..+|.++.++|+|||.|+|
T Consensus 121 V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 121 VMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred EecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 9998887765 22 3689999999999999985
No 32
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.55 E-value=1.4e-14 Score=118.87 Aligned_cols=100 Identities=19% Similarity=0.266 Sum_probs=74.0
Q ss_pred cCCCchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCCC---------CC-------cEEEccCCCC
Q 027441 123 HWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN---------DP-------SVIACDMSNT 183 (223)
Q Consensus 123 ~~p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~---------~~-------~~~~~d~~~l 183 (223)
..|.+|.+.+............++|+|||+|..++.++ .+|+|+|+|+. ++ .+...++..|
T Consensus 15 ARP~YPtdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L 94 (261)
T KOG3010|consen 15 ARPSYPTDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDL 94 (261)
T ss_pred cCCCCcHHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccc
Confidence 45677766655554444334599999999998888887 68999999971 11 1222223333
Q ss_pred CCCCCceeEEEEcccccCCCHHHHHHHHHHccCCCC-EEE
Q 027441 184 PLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRG-EEQ 222 (223)
Q Consensus 184 p~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG-~lv 222 (223)
--.++++|+|+|..++||+|.++++.+++|+||+.| ++.
T Consensus 95 ~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 95 LGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred cCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEE
Confidence 333899999999999999999999999999999866 654
No 33
>PRK08317 hypothetical protein; Provisional
Probab=99.54 E-value=3.4e-14 Score=117.41 Aligned_cols=92 Identities=23% Similarity=0.330 Sum_probs=77.8
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC--------------CCCcEEEccCCCCCCCCCce
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSV 190 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sf 190 (223)
.++..+... ++.+|||+|||+|.++..++ .+|+|+|+++ .++.+..+|+..+++.+++|
T Consensus 10 ~~~~~~~~~-~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 10 RTFELLAVQ-PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHHcCCC-CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 344444433 67899999999999888775 3799999996 24677888998888888999
Q ss_pred eEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 191 DVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 191 D~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
|+|++..+++|+ ++..++.++.++|+|||.|++
T Consensus 89 D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 122 (241)
T PRK08317 89 DAVRSDRVLQHLEDPARALAEIARVLRPGGRVVV 122 (241)
T ss_pred eEEEEechhhccCCHHHHHHHHHHHhcCCcEEEE
Confidence 999999999999 999999999999999999874
No 34
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.53 E-value=9.7e-15 Score=105.53 Aligned_cols=76 Identities=24% Similarity=0.336 Sum_probs=47.9
Q ss_pred EEECCcchHHHHHhc-----CceEEEecCCCCC---------------cEEEccCCCCC--CCCCceeEEEEcccccCC-
Q 027441 146 ADFGCGDARLAKSVK-----NKVFSFDLVSNDP---------------SVIACDMSNTP--LNSSSVDVAVFCLSLMGI- 202 (223)
Q Consensus 146 LDiGcG~G~~a~~la-----~~v~gvDis~~~~---------------~~~~~d~~~lp--~~~~sfD~Vi~~~~l~~~- 202 (223)
||||||+|.++..+. .+++|+|+|+..+ ..+..+..+.. ...++||+|++..++||+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 799999999888876 5799999998332 12222222221 112599999999999999
Q ss_pred CHHHHHHHHHHccCCCCEE
Q 027441 203 NFPNYLQEAQRVLKPRGEE 221 (223)
Q Consensus 203 d~~~~l~e~~rvLkpgG~l 221 (223)
++..++..+.++|+|||.|
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999986
No 35
>PRK06922 hypothetical protein; Provisional
Probab=99.52 E-value=7e-14 Score=129.94 Aligned_cols=83 Identities=28% Similarity=0.392 Sum_probs=70.9
Q ss_pred CCCeEEEECCcchHHHHHhc-----CceEEEecCC--------------CCCcEEEccCCCCC--CCCCceeEEEEcccc
Q 027441 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTP--LNSSSVDVAVFCLSL 199 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~~~l 199 (223)
++.+|||||||+|.++..++ ..|+|+|+|+ .++.++++|+.++| +++++||+|+++.++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 67899999999999887775 4899999997 13456788988887 788999999999999
Q ss_pred cCC--------------CHHHHHHHHHHccCCCCEEEc
Q 027441 200 MGI--------------NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 200 ~~~--------------d~~~~l~e~~rvLkpgG~lvi 223 (223)
||+ ++..+|.++.++|+|||.++|
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 864 346999999999999999986
No 36
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.52 E-value=3.8e-14 Score=120.66 Aligned_cols=94 Identities=18% Similarity=0.261 Sum_probs=78.6
Q ss_pred hHHHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC--------------CCCc--EEEccCCCCCCCC
Q 027441 128 PVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPS--VIACDMSNTPLNS 187 (223)
Q Consensus 128 ~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------------~~~~--~~~~d~~~lp~~~ 187 (223)
..+.+..++.+. .+.+|||||||.|+++..++ ..|+|+|.++ .... ++-..++.+|. .
T Consensus 103 KW~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~ 180 (315)
T PF08003_consen 103 KWDRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L 180 (315)
T ss_pred hHHHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c
Confidence 347788888766 78999999999999998776 4799999997 1222 22246678887 7
Q ss_pred CceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 188 SSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 188 ~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
+.||+|+|.+||+|. +|-..|.++...|+|||.|++
T Consensus 181 ~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvL 217 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVL 217 (315)
T ss_pred CCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEE
Confidence 899999999999999 999999999999999999985
No 37
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.52 E-value=1.5e-14 Score=123.32 Aligned_cols=81 Identities=26% Similarity=0.379 Sum_probs=64.5
Q ss_pred CCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcccc
Q 027441 140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL 199 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l 199 (223)
.++.+|||||||.|.++..++ .+|+|+.+|+ ..+.+..+|..+++. +||.|++..++
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~~~ 137 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIEMF 137 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESEG
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEech
Confidence 488999999999999999998 5899999996 356788888877654 89999999999
Q ss_pred cCC---CHHHHHHHHHHccCCCCEEEc
Q 027441 200 MGI---NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 200 ~~~---d~~~~l~e~~rvLkpgG~lvi 223 (223)
+|+ +++.++..+.++|+|||.+++
T Consensus 138 Ehvg~~~~~~~f~~~~~~LkpgG~~~l 164 (273)
T PF02353_consen 138 EHVGRKNYPAFFRKISRLLKPGGRLVL 164 (273)
T ss_dssp GGTCGGGHHHHHHHHHHHSETTEEEEE
T ss_pred hhcChhHHHHHHHHHHHhcCCCcEEEE
Confidence 999 678999999999999999975
No 38
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.51 E-value=5.4e-14 Score=118.35 Aligned_cols=81 Identities=21% Similarity=0.349 Sum_probs=69.3
Q ss_pred CCCeEEEECCcchHHHHHhc-------CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcc
Q 027441 141 PSLVIADFGCGDARLAKSVK-------NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCL 197 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-------~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~ 197 (223)
++.+|||||||+|..+..++ .+|+|+|+|+ .++.++.+|+..+|++ .+|+|++..
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 133 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence 66899999999999877654 3799999997 2578889999888865 489999999
Q ss_pred cccCCC---HHHHHHHHHHccCCCCEEEc
Q 027441 198 SLMGIN---FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 198 ~l~~~d---~~~~l~e~~rvLkpgG~lvi 223 (223)
++||++ ...++.+++++|+|||.|++
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l 162 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPGGALVL 162 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 999994 35899999999999999975
No 39
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.51 E-value=6.2e-14 Score=120.49 Aligned_cols=90 Identities=18% Similarity=0.269 Sum_probs=72.3
Q ss_pred HHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEEE
Q 027441 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAV 194 (223)
Q Consensus 132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~Vi 194 (223)
++..+... +..+|||||||+|..+.+++ .+|+|+|+|+ .++.+...|+...++ +++||+|+
T Consensus 112 ~~~~~~~~-~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~ 189 (287)
T PRK12335 112 VLEAVQTV-KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFIL 189 (287)
T ss_pred HHHHhhcc-CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEE
Confidence 34444333 45699999999999999887 5899999997 245667778877665 67899999
Q ss_pred EcccccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441 195 FCLSLMGI---NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 195 ~~~~l~~~---d~~~~l~e~~rvLkpgG~lvi 223 (223)
+..++||+ +.+.++.++.++|+|||++++
T Consensus 190 ~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 190 STVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 99999998 456899999999999999653
No 40
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.50 E-value=5.6e-14 Score=119.22 Aligned_cols=90 Identities=22% Similarity=0.354 Sum_probs=75.1
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCc
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS 189 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~s 189 (223)
+.+.+.+... ++.+|||||||.|.++.+++ .+|+|+++|+ .++++...|..+++ +.
T Consensus 62 ~~~~~kl~L~-~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~ 137 (283)
T COG2230 62 DLILEKLGLK-PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EP 137 (283)
T ss_pred HHHHHhcCCC-CCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cc
Confidence 4444544444 89999999999999999998 5799999997 35667777776665 44
Q ss_pred eeEEEEcccccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441 190 VDVAVFCLSLMGI---NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 190 fD~Vi~~~~l~~~---d~~~~l~e~~rvLkpgG~lvi 223 (223)
||-|++..+++|+ +++.+|..+.++|+|||.+++
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~ll 174 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLL 174 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEE
Confidence 9999999999999 689999999999999999874
No 41
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.50 E-value=1e-13 Score=114.21 Aligned_cols=106 Identities=14% Similarity=0.134 Sum_probs=79.7
Q ss_pred HHhhhccCC-CchHHHHHHHHhcc--CCCCeEEEECCcchHHHHHhc---CceEEEecCCC-------------------
Q 027441 117 YQEQMSHWP-ELPVNIIVKWLKDH--SPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN------------------- 171 (223)
Q Consensus 117 ~~~~~~~~p-~~~~~~i~~~l~~~--~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~------------------- 171 (223)
|......|. ..+...+.+++... +++.+|||+|||.|..+.+|+ -.|+|+|+|+.
T Consensus 7 y~~~~~~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~ 86 (213)
T TIGR03840 7 WQEGQIGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQG 86 (213)
T ss_pred HhcCCCCCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccc
Confidence 333333453 33444555555432 366899999999999999999 37999999972
Q ss_pred --------CCcEEEccCCCCCCC-CCceeEEEEcccccCCCH---HHHHHHHHHccCCCCEEE
Q 027441 172 --------DPSVIACDMSNTPLN-SSSVDVAVFCLSLMGINF---PNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 172 --------~~~~~~~d~~~lp~~-~~sfD~Vi~~~~l~~~d~---~~~l~e~~rvLkpgG~lv 222 (223)
++.+.++|+..++.. ...||.|+...+++|+++ +.++..+.++|+|||+++
T Consensus 87 ~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~l 149 (213)
T TIGR03840 87 EFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQL 149 (213)
T ss_pred cceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEE
Confidence 256688999887643 467999999999999944 479999999999999754
No 42
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.50 E-value=1.3e-13 Score=112.85 Aligned_cols=90 Identities=16% Similarity=0.233 Sum_probs=71.2
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC----------CCCcEEEccCCCCCCCCCceeEEEE
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVF 195 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------~~~~~~~~d~~~lp~~~~sfD~Vi~ 195 (223)
.+...+...+++.+|||||||+|.++..|+ .+++|+|+|+ .++.+..+|+.. |+++++||+|++
T Consensus 33 ~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~ 111 (204)
T TIGR03587 33 MFARALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLT 111 (204)
T ss_pred HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEE
Confidence 344444444467889999999999888775 4699999997 356788889887 888999999999
Q ss_pred cccccCCC---HHHHHHHHHHccCCCCEEEc
Q 027441 196 CLSLMGIN---FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 196 ~~~l~~~d---~~~~l~e~~rvLkpgG~lvi 223 (223)
..+++|++ ...++.++.|++ ++.++|
T Consensus 112 ~~vL~hl~p~~~~~~l~el~r~~--~~~v~i 140 (204)
T TIGR03587 112 KGVLIHINPDNLPTAYRELYRCS--NRYILI 140 (204)
T ss_pred CChhhhCCHHHHHHHHHHHHhhc--CcEEEE
Confidence 99999995 458888888887 355543
No 43
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.49 E-value=5e-14 Score=116.35 Aligned_cols=79 Identities=16% Similarity=0.272 Sum_probs=68.8
Q ss_pred eEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcccccCC
Q 027441 144 VIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI 202 (223)
Q Consensus 144 ~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~ 202 (223)
+|||||||+|.++..++ .+|+|+|+|+ .++.++.+|+...|++ ++||+|++..+++|+
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~ 80 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHI 80 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhC
Confidence 69999999999888776 3689999986 2457888888776764 589999999999999
Q ss_pred -CHHHHHHHHHHccCCCCEEEc
Q 027441 203 -NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 203 -d~~~~l~e~~rvLkpgG~lvi 223 (223)
++..+|.++.++|+|||.|++
T Consensus 81 ~~~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 81 KDKMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred CCHHHHHHHHHHHcCCCCEEEE
Confidence 999999999999999999975
No 44
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.49 E-value=1.6e-14 Score=105.04 Aligned_cols=75 Identities=25% Similarity=0.553 Sum_probs=62.5
Q ss_pred EEEECCcchHHHHHhc--------CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEEEEcc-cccC
Q 027441 145 IADFGCGDARLAKSVK--------NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCL-SLMG 201 (223)
Q Consensus 145 ILDiGcG~G~~a~~la--------~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~-~l~~ 201 (223)
|||+|||+|..+..+. .+++|+|+++ ..+.++++|+.++++.+++||+|++++ +++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999887765 4789999997 367899999999998889999999954 4999
Q ss_pred CC---HHHHHHHHHHccCCCC
Q 027441 202 IN---FPNYLQEAQRVLKPRG 219 (223)
Q Consensus 202 ~d---~~~~l~e~~rvLkpgG 219 (223)
++ ...+++++.++|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 94 5699999999999998
No 45
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.49 E-value=1.2e-13 Score=111.09 Aligned_cols=83 Identities=27% Similarity=0.339 Sum_probs=72.7
Q ss_pred CCCeEEEECCcchHHHHHhc----CceEEEecCC---------------CCCc-EEEccCCCCC-CCCCceeEEEEcccc
Q 027441 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPS-VIACDMSNTP-LNSSSVDVAVFCLSL 199 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~~~~-~~~~d~~~lp-~~~~sfD~Vi~~~~l 199 (223)
....||+||||||..-.+.. .+|+++|+++ ..+. |++++.+++| ++++++|.|++.++|
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 34668999999999777665 5899999997 3444 8899999998 899999999999999
Q ss_pred cCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 200 MGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 200 ~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
--+ |+...|.++.|+|||||.+++
T Consensus 156 CSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 156 CSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred eccCCHHHHHHHHHHhcCCCcEEEE
Confidence 866 999999999999999999985
No 46
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.49 E-value=4e-13 Score=111.32 Aligned_cols=92 Identities=27% Similarity=0.495 Sum_probs=76.6
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCCCCCCC
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLNSS 188 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~ 188 (223)
.++..+... ++.+|||||||+|.++..++ .+|+++|+++ .++.+..+|+..++++.+
T Consensus 42 ~~~~~~~~~-~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (239)
T PRK00216 42 KTIKWLGVR-PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN 120 (239)
T ss_pred HHHHHhCCC-CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence 344444433 56899999999999887764 5799999986 246778889988888888
Q ss_pred ceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 189 SVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 189 sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
+||+|++..+++++ ++..++..+.++|+|||.+++
T Consensus 121 ~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 121 SFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred CccEEEEecccccCCCHHHHHHHHHHhccCCcEEEE
Confidence 99999999999998 899999999999999998874
No 47
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.49 E-value=3e-13 Score=110.90 Aligned_cols=91 Identities=29% Similarity=0.420 Sum_probs=77.0
Q ss_pred HHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC-------------CCCcEEEccCCCCCCCCCceeE
Q 027441 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDV 192 (223)
Q Consensus 132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~-------------~~~~~~~~d~~~lp~~~~sfD~ 192 (223)
++..+... ++.+|||+|||+|.++..++ .+++++|+++ .++.+..+|+...+++++.||+
T Consensus 31 ~~~~~~~~-~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 109 (223)
T TIGR01934 31 AVKLIGVF-KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDA 109 (223)
T ss_pred HHHHhccC-CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEE
Confidence 34444333 67899999999999888776 2799999985 2467889999988888889999
Q ss_pred EEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 193 AVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 193 Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
|++..+++|. ++..++.++.++|+|||.|++
T Consensus 110 i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 110 VTIAFGLRNVTDIQKALREMYRVLKPGGRLVI 141 (223)
T ss_pred EEEeeeeCCcccHHHHHHHHHHHcCCCcEEEE
Confidence 9999999998 889999999999999999874
No 48
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.48 E-value=1e-13 Score=126.75 Aligned_cols=94 Identities=18% Similarity=0.273 Sum_probs=78.6
Q ss_pred HHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------CCCcEEEccCC--CCCCCCCce
Q 027441 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMS--NTPLNSSSV 190 (223)
Q Consensus 129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------~~~~~~~~d~~--~lp~~~~sf 190 (223)
...++..+... ++.+|||||||+|.++..|+ .+|+|+|+++ .++.++++|+. .+|+++++|
T Consensus 26 ~~~il~~l~~~-~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~f 104 (475)
T PLN02336 26 RPEILSLLPPY-EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSV 104 (475)
T ss_pred hhHHHhhcCcc-CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCE
Confidence 35566666544 56799999999999999887 5799999997 25678888985 467888999
Q ss_pred eEEEEcccccCCC---HHHHHHHHHHccCCCCEEEc
Q 027441 191 DVAVFCLSLMGIN---FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 191 D~Vi~~~~l~~~d---~~~~l~e~~rvLkpgG~lvi 223 (223)
|+|++..+++|+. ...++.++.|+|+|||+|++
T Consensus 105 D~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 105 DLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred EEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 9999999999993 46899999999999999975
No 49
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.47 E-value=1.2e-13 Score=115.57 Aligned_cols=81 Identities=16% Similarity=0.287 Sum_probs=69.1
Q ss_pred CCCeEEEECCcchHHHHHhc-------CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcc
Q 027441 141 PSLVIADFGCGDARLAKSVK-------NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCL 197 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-------~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~ 197 (223)
++.+|||||||+|.++..++ .+|+|+|+|+ .++.++.+|+..++++ .+|+|++..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 66899999999999887664 3599999996 2467889999988875 489999999
Q ss_pred cccCCC---HHHHHHHHHHccCCCCEEEc
Q 027441 198 SLMGIN---FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 198 ~l~~~d---~~~~l~e~~rvLkpgG~lvi 223 (223)
++||++ +..++.++.++|+|||.|+|
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i 159 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVL 159 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 999983 46899999999999999985
No 50
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.44 E-value=3.8e-13 Score=114.32 Aligned_cols=83 Identities=18% Similarity=0.200 Sum_probs=68.6
Q ss_pred CCCeEEEECCcchH----HHHHhc----------CceEEEecCC-------C----------------------------
Q 027441 141 PSLVIADFGCGDAR----LAKSVK----------NKVFSFDLVS-------N---------------------------- 171 (223)
Q Consensus 141 ~~~~ILDiGcG~G~----~a~~la----------~~v~gvDis~-------~---------------------------- 171 (223)
+..+|||+|||+|. ++..++ .+|+|+|+|+ .
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 333332 2699999997 0
Q ss_pred -------CCcEEEccCCCCCCCCCceeEEEEcccccCCCHH---HHHHHHHHccCCCCEEEc
Q 027441 172 -------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFP---NYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 172 -------~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~---~~l~e~~rvLkpgG~lvi 223 (223)
++.|.++|+...+++.+.||+|+|.++++|++.+ .++.+++++|+|||+|+|
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 4567888998888778899999999999999543 799999999999999986
No 51
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.44 E-value=5.7e-13 Score=107.69 Aligned_cols=79 Identities=16% Similarity=0.152 Sum_probs=67.8
Q ss_pred CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEccccc
Q 027441 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM 200 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~ 200 (223)
++.+|||||||+|..+..++ .+|+++|+++ .++.+..+|+..++. +++||+|++...
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 47899999999999888775 5899999996 357889999988877 779999998652
Q ss_pred CCCHHHHHHHHHHccCCCCEEEc
Q 027441 201 GINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 201 ~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
.+++.++.++.++|+|||.|++
T Consensus 122 -~~~~~~l~~~~~~LkpGG~lv~ 143 (187)
T PRK00107 122 -ASLSDLVELCLPLLKPGGRFLA 143 (187)
T ss_pred -cCHHHHHHHHHHhcCCCeEEEE
Confidence 3788999999999999999985
No 52
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.43 E-value=3.9e-13 Score=108.63 Aligned_cols=91 Identities=20% Similarity=0.245 Sum_probs=71.6
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEE
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVA 193 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~V 193 (223)
.+.+.+... +..++||||||.|..+.+|+ -.|+++|+|+ -.+...+.|+....++ ..||+|
T Consensus 21 ~v~~a~~~~-~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I 98 (192)
T PF03848_consen 21 EVLEAVPLL-KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFI 98 (192)
T ss_dssp HHHHHCTTS--SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEE
T ss_pred HHHHHHhhc-CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEE
Confidence 344444444 67899999999999999999 3799999997 2466788999888875 679999
Q ss_pred EEcccccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441 194 VFCLSLMGI---NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 194 i~~~~l~~~---d~~~~l~e~~rvLkpgG~lvi 223 (223)
++..+++|+ ..+.++..+...++|||+++|
T Consensus 99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEE
Confidence 999999999 445899999999999999875
No 53
>PRK06202 hypothetical protein; Provisional
Probab=99.43 E-value=9.1e-13 Score=109.70 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=66.0
Q ss_pred CCCCeEEEECCcchHHHHHhc---------CceEEEecCC------------CCCcEEEccCCCCCCCCCceeEEEEccc
Q 027441 140 SPSLVIADFGCGDARLAKSVK---------NKVFSFDLVS------------NDPSVIACDMSNTPLNSSSVDVAVFCLS 198 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la---------~~v~gvDis~------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~ 198 (223)
.++.+|||||||+|.++..|+ .+|+|+|+++ .++.+.+.++..+++.+++||+|+++++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 356899999999999877765 2799999997 2456677777778877889999999999
Q ss_pred ccCC-C--HHHHHHHHHHccCCCCEE
Q 027441 199 LMGI-N--FPNYLQEAQRVLKPRGEE 221 (223)
Q Consensus 199 l~~~-d--~~~~l~e~~rvLkpgG~l 221 (223)
+||+ + ...++.++.|+++ |+++
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~-~~~~ 163 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR-RLVL 163 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC-eeEE
Confidence 9999 4 3479999999998 4443
No 54
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.43 E-value=4.2e-13 Score=119.70 Aligned_cols=88 Identities=23% Similarity=0.353 Sum_probs=70.1
Q ss_pred HHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCCC------------CCcEEEccCCCCCCCCCceeEEEE
Q 027441 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVSN------------DPSVIACDMSNTPLNSSSVDVAVF 195 (223)
Q Consensus 132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~~------------~~~~~~~d~~~lp~~~~sfD~Vi~ 195 (223)
+++.+.. .++.+|||||||+|.++..++ .+|+|+|+|+. .+.+..+|...+ +++||+|++
T Consensus 159 l~~~l~l-~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs 234 (383)
T PRK11705 159 ICRKLQL-KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVS 234 (383)
T ss_pred HHHHhCC-CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEE
Confidence 3344433 377899999999999998876 47999999971 345556666554 478999999
Q ss_pred cccccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441 196 CLSLMGI---NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 196 ~~~l~~~---d~~~~l~e~~rvLkpgG~lvi 223 (223)
..+++|+ +++.++.++.++|+|||.+++
T Consensus 235 ~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl 265 (383)
T PRK11705 235 VGMFEHVGPKNYRTYFEVVRRCLKPDGLFLL 265 (383)
T ss_pred eCchhhCChHHHHHHHHHHHHHcCCCcEEEE
Confidence 9999998 457999999999999999975
No 55
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.42 E-value=3.2e-13 Score=110.38 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=69.0
Q ss_pred CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccC-CCCC--CCCCceeEEEEcc
Q 027441 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDM-SNTP--LNSSSVDVAVFCL 197 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~-~~lp--~~~~sfD~Vi~~~ 197 (223)
+..+|||||||+|.++..++ .+|+|+|+++ .++.++.+|+ ..++ +++++||+|++.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 46899999999999988876 3699999997 3577889998 7766 7788999999877
Q ss_pred cccCC---------CHHHHHHHHHHccCCCCEEEc
Q 027441 198 SLMGI---------NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 198 ~l~~~---------d~~~~l~e~~rvLkpgG~lvi 223 (223)
...|. ..+.++.++.++|+|||.|+|
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEE
Confidence 65432 257899999999999999975
No 56
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.40 E-value=1e-12 Score=105.64 Aligned_cols=79 Identities=15% Similarity=0.126 Sum_probs=65.6
Q ss_pred CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEccccc
Q 027441 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM 200 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~ 200 (223)
++.+|||||||+|.++..++ .+|+|+|+++ .++.++.+|+..++ .+++||+|++.. +
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~- 118 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L- 118 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h-
Confidence 47899999999999888765 4799999997 35778899998875 357899999865 2
Q ss_pred CCCHHHHHHHHHHccCCCCEEEc
Q 027441 201 GINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 201 ~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
.+++.++..+.++|+|||.+++
T Consensus 119 -~~~~~~~~~~~~~LkpgG~lvi 140 (181)
T TIGR00138 119 -ASLNVLLELTLNLLKVGGYFLA 140 (181)
T ss_pred -hCHHHHHHHHHHhcCCCCEEEE
Confidence 2667889999999999999975
No 57
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.40 E-value=1.6e-12 Score=107.48 Aligned_cols=107 Identities=13% Similarity=0.128 Sum_probs=79.8
Q ss_pred hHHhhhccCC-CchHHHHHHHHhc--cCCCCeEEEECCcchHHHHHhc---CceEEEecCCC------------------
Q 027441 116 GYQEQMSHWP-ELPVNIIVKWLKD--HSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN------------------ 171 (223)
Q Consensus 116 ~~~~~~~~~p-~~~~~~i~~~l~~--~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~------------------ 171 (223)
.|......|. ..+...+.+++.. .+++.+|||+|||.|..+..|+ ..|+|+|+|+.
T Consensus 9 rw~~~~~~~~~~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~ 88 (218)
T PRK13255 9 KWAENQIGFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQS 88 (218)
T ss_pred HHcCCCCCCCCCCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCcccccc
Confidence 3333333453 4555566666542 2356899999999999999998 47999999961
Q ss_pred ---------CCcEEEccCCCCCCCC-CceeEEEEcccccCCC---HHHHHHHHHHccCCCCEEE
Q 027441 172 ---------DPSVIACDMSNTPLNS-SSVDVAVFCLSLMGIN---FPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 172 ---------~~~~~~~d~~~lp~~~-~sfD~Vi~~~~l~~~d---~~~~l~e~~rvLkpgG~lv 222 (223)
++.+.++|+..++..+ ..||.|+...+++|++ ...++..+.++|+|||+++
T Consensus 89 ~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 89 GEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred ccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEE
Confidence 2456788888875432 5899999999999994 4599999999999998643
No 58
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.39 E-value=9.3e-13 Score=105.87 Aligned_cols=82 Identities=16% Similarity=0.218 Sum_probs=65.0
Q ss_pred CCCeEEEECCcchHHHHHhc---CceEEEecCC-------------CCCcEEEccCCCCCCCCCceeEEEEcccccCC-C
Q 027441 141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-N 203 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-d 203 (223)
.-.++||+|||.|.++..|+ .+++++|+|+ .++.+.++|+.... +++.||+|+++.+++|+ +
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~-P~~~FDLIV~SEVlYYL~~ 121 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFW-PEGRFDLIVLSEVLYYLDD 121 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSSS
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC-CCCCeeEEEEehHhHcCCC
Confidence 55889999999999999999 5799999997 67889999997754 67899999999999999 4
Q ss_pred HH---HHHHHHHHccCCCCEEEc
Q 027441 204 FP---NYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 204 ~~---~~l~e~~rvLkpgG~lvi 223 (223)
.+ .++..+...|.|||.|++
T Consensus 122 ~~~L~~~l~~l~~~L~pgG~LV~ 144 (201)
T PF05401_consen 122 AEDLRAALDRLVAALAPGGHLVF 144 (201)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCEEEE
Confidence 33 789999999999999985
No 59
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.39 E-value=6.4e-13 Score=106.52 Aligned_cols=84 Identities=26% Similarity=0.483 Sum_probs=72.2
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC--------CCCcEEEccCCC-C-CCCCCceeEEEE
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------NDPSVIACDMSN-T-PLNSSSVDVAVF 195 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------~~~~~~~~d~~~-l-p~~~~sfD~Vi~ 195 (223)
+.|.+++. ++.+|||||||.|.+..+|. ...+|+|+++ ..+.++++|+.. + .|++++||+||+
T Consensus 5 ~~I~~~I~---pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIl 81 (193)
T PF07021_consen 5 QIIAEWIE---PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVIL 81 (193)
T ss_pred HHHHHHcC---CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEeh
Confidence 46677766 78999999999999999997 3678999998 467789999965 4 488999999999
Q ss_pred cccccCC-CHHHHHHHHHHccC
Q 027441 196 CLSLMGI-NFPNYLQEAQRVLK 216 (223)
Q Consensus 196 ~~~l~~~-d~~~~l~e~~rvLk 216 (223)
+.+|.++ +|..+|.|+.|+-+
T Consensus 82 sqtLQ~~~~P~~vL~EmlRVgr 103 (193)
T PF07021_consen 82 SQTLQAVRRPDEVLEEMLRVGR 103 (193)
T ss_pred HhHHHhHhHHHHHHHHHHHhcC
Confidence 9999999 88899999998865
No 60
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.39 E-value=1.9e-12 Score=96.41 Aligned_cols=89 Identities=17% Similarity=0.210 Sum_probs=67.3
Q ss_pred HHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCC-CCCCCCce
Q 027441 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSN-TPLNSSSV 190 (223)
Q Consensus 132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~-lp~~~~sf 190 (223)
++..+... ++.+|||+|||+|.++..++ .+|+++|+++ .++.++.+|+.. ++....+|
T Consensus 11 ~~~~~~~~-~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (124)
T TIGR02469 11 TLSKLRLR-PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEP 89 (124)
T ss_pred HHHHcCCC-CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCC
Confidence 44444322 56799999999999988886 3799999996 345666777654 33334689
Q ss_pred eEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 191 DVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 191 D~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
|+|++....++ ...++.++.++|+|||.|++
T Consensus 90 D~v~~~~~~~~--~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 90 DRVFIGGSGGL--LQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred CEEEECCcchh--HHHHHHHHHHHcCCCCEEEE
Confidence 99999776443 46899999999999999985
No 61
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.37 E-value=2.3e-12 Score=105.50 Aligned_cols=88 Identities=19% Similarity=0.257 Sum_probs=68.4
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCCCCCC
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLNS 187 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~lp~~~ 187 (223)
..+++.+... ++.+|||||||+|..+..++ .+|+++|+++ .++.+..+|+...+...
T Consensus 62 ~~~~~~l~~~-~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~ 140 (205)
T PRK13944 62 AMMCELIEPR-PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH 140 (205)
T ss_pred HHHHHhcCCC-CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence 4455555433 67899999999999887765 4799999996 13677888987655456
Q ss_pred CceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 188 ~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
.+||+|++..+++++. .++.++|+|||.|++
T Consensus 141 ~~fD~Ii~~~~~~~~~-----~~l~~~L~~gG~lvi 171 (205)
T PRK13944 141 APFDAIIVTAAASTIP-----SALVRQLKDGGVLVI 171 (205)
T ss_pred CCccEEEEccCcchhh-----HHHHHhcCcCcEEEE
Confidence 7999999999887653 478899999999975
No 62
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.37 E-value=2.7e-12 Score=106.70 Aligned_cols=83 Identities=17% Similarity=0.251 Sum_probs=69.0
Q ss_pred CCCeEEEECCcchHHHHHhc---CceEEEecCCC--------------CCcEEEccCCCCC-CCCCceeEEEEcccccCC
Q 027441 141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVSN--------------DPSVIACDMSNTP-LNSSSVDVAVFCLSLMGI 202 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~--------------~~~~~~~d~~~lp-~~~~sfD~Vi~~~~l~~~ 202 (223)
++.+|||||||+|.++..+. ..|+++|+++. .+.+..+++..++ ..++.||+|++..+++|+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~ 127 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV 127 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence 67899999999999888776 57999999861 2455666666554 345789999999999999
Q ss_pred -CHHHHHHHHHHccCCCCEEEc
Q 027441 203 -NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 203 -d~~~~l~e~~rvLkpgG~lvi 223 (223)
++..++..+.++|+|||.|++
T Consensus 128 ~~~~~~l~~~~~~L~~gG~l~v 149 (233)
T PRK05134 128 PDPASFVRACAKLVKPGGLVFF 149 (233)
T ss_pred CCHHHHHHHHHHHcCCCcEEEE
Confidence 889999999999999999875
No 63
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.35 E-value=6.1e-12 Score=101.49 Aligned_cols=92 Identities=22% Similarity=0.281 Sum_probs=69.4
Q ss_pred HHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCCC----CCcEEEccCCCCC--------CCCCceeEE
Q 027441 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVSN----DPSVIACDMSNTP--------LNSSSVDVA 193 (223)
Q Consensus 132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~~----~~~~~~~d~~~lp--------~~~~sfD~V 193 (223)
+.+.+....++.+|||+|||+|.++..++ .+|+++|+++. ++.++.+|+.+.+ ++++.||+|
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V 102 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVV 102 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEE
Confidence 34444444578999999999999888765 35999999983 6778888887643 456789999
Q ss_pred EEccccc----C-CC-------HHHHHHHHHHccCCCCEEEc
Q 027441 194 VFCLSLM----G-IN-------FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 194 i~~~~l~----~-~d-------~~~~l~e~~rvLkpgG~lvi 223 (223)
++..+.+ | ++ ...++..+.++|+|||.++|
T Consensus 103 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi 144 (188)
T TIGR00438 103 MSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVV 144 (188)
T ss_pred EcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 9865422 1 12 25899999999999999985
No 64
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.35 E-value=1.6e-12 Score=105.45 Aligned_cols=92 Identities=15% Similarity=0.224 Sum_probs=80.2
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC----------CCCcEEEccCCCCCCCCCceeEEE
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAV 194 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------~~~~~~~~d~~~lp~~~~sfD~Vi 194 (223)
..++.++... +...|.|||||+|..+..|+ +.|+|+|-|+ .++.|..+|+..+. +...+|+++
T Consensus 20 ~dLla~Vp~~-~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllf 97 (257)
T COG4106 20 RDLLARVPLE-RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLF 97 (257)
T ss_pred HHHHhhCCcc-ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhh
Confidence 4566666655 66899999999999999887 5799999997 68889999998875 457799999
Q ss_pred EcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 195 FCLSLMGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 195 ~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
++.+|+|+ |-..+|..+.-.|.|||.|.+
T Consensus 98 aNAvlqWlpdH~~ll~rL~~~L~Pgg~LAV 127 (257)
T COG4106 98 ANAVLQWLPDHPELLPRLVSQLAPGGVLAV 127 (257)
T ss_pred hhhhhhhccccHHHHHHHHHhhCCCceEEE
Confidence 99999999 999999999999999999864
No 65
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.34 E-value=3.8e-12 Score=103.23 Aligned_cols=86 Identities=22% Similarity=0.390 Sum_probs=70.2
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC--------CCCcEEEccCCC-C-CCCCCceeEEEE
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------NDPSVIACDMSN-T-PLNSSSVDVAVF 195 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------~~~~~~~~d~~~-l-p~~~~sfD~Vi~ 195 (223)
+.+.+.+. ++.+|||||||+|.++..++ ..++|+|+++ .++.++.+|+.. + ++++++||+|++
T Consensus 5 ~~i~~~i~---~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~ 81 (194)
T TIGR02081 5 ESILNLIP---PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVIL 81 (194)
T ss_pred HHHHHhcC---CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEE
Confidence 34455543 56799999999999988875 3578999996 356788889865 4 477889999999
Q ss_pred cccccCC-CHHHHHHHHHHccCCC
Q 027441 196 CLSLMGI-NFPNYLQEAQRVLKPR 218 (223)
Q Consensus 196 ~~~l~~~-d~~~~l~e~~rvLkpg 218 (223)
..++||+ ++..++.++.|+++++
T Consensus 82 ~~~l~~~~d~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 82 SQTLQATRNPEEILDEMLRVGRHA 105 (194)
T ss_pred hhHhHcCcCHHHHHHHHHHhCCeE
Confidence 9999999 9999999999988764
No 66
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.34 E-value=9.8e-12 Score=99.49 Aligned_cols=90 Identities=19% Similarity=0.324 Sum_probs=69.5
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEE
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVA 193 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~V 193 (223)
.+...+... ++.+|||+|||+|.++..++ .+|+++|+++ .++.++.+|+...+ .++||+|
T Consensus 10 ~l~~~l~~~-~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~V 86 (179)
T TIGR00537 10 LLEANLREL-KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVI 86 (179)
T ss_pred HHHHHHHhc-CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEE
Confidence 344555544 56789999999999998887 3699999997 23556777876644 4589999
Q ss_pred EEcccccCCC----------------------HHHHHHHHHHccCCCCEEEc
Q 027441 194 VFCLSLMGIN----------------------FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 194 i~~~~l~~~d----------------------~~~~l~e~~rvLkpgG~lvi 223 (223)
++...+++.+ ...++.++.++|+|||.+++
T Consensus 87 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~ 138 (179)
T TIGR00537 87 LFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQL 138 (179)
T ss_pred EECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEE
Confidence 9998876552 34689999999999999875
No 67
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.33 E-value=6.3e-12 Score=103.53 Aligned_cols=88 Identities=19% Similarity=0.181 Sum_probs=69.4
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCCCCCC
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSS 188 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~ 188 (223)
..+++.+... ++.+|||||||+|+++..++ .+|+++|+++ .++.++.+|+...+...+
T Consensus 66 ~~~~~~l~~~-~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 66 AIMCELLDLK-EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHHcCCC-CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence 4455555443 78999999999999987765 4899999996 367889999877666678
Q ss_pred ceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 189 sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
.||+|++..+++++ ...+.+.|+|||.|++
T Consensus 145 ~fD~I~~~~~~~~~-----~~~l~~~LkpgG~lvi 174 (212)
T PRK13942 145 PYDRIYVTAAGPDI-----PKPLIEQLKDGGIMVI 174 (212)
T ss_pred CcCEEEECCCcccc-----hHHHHHhhCCCcEEEE
Confidence 99999998876543 3467788999999875
No 68
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.33 E-value=5.1e-12 Score=104.26 Aligned_cols=90 Identities=18% Similarity=0.221 Sum_probs=72.5
Q ss_pred HHHHHHHhc-cCCCCeEEEECCcchHHHHHhc---CceEEEecCC----------------CCCcEEEccCCCCCCCCCc
Q 027441 130 NIIVKWLKD-HSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSS 189 (223)
Q Consensus 130 ~~i~~~l~~-~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~s 189 (223)
..+++++.. ..++.+|||||||+|.++..++ .+|+|+|+++ .++.+.++|+..++ ++
T Consensus 43 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~ 119 (219)
T TIGR02021 43 RKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GE 119 (219)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CC
Confidence 455666653 3367899999999999999887 5799999997 15678888888776 78
Q ss_pred eeEEEEcccccCCC---HHHHHHHHHHccCCCCEEE
Q 027441 190 VDVAVFCLSLMGIN---FPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 190 fD~Vi~~~~l~~~d---~~~~l~e~~rvLkpgG~lv 222 (223)
||+|++..+++|++ ...++.++.+++++++++.
T Consensus 120 fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 120 FDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFT 155 (219)
T ss_pred cCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999873 4588999999999877664
No 69
>PLN03075 nicotianamine synthase; Provisional
Probab=99.33 E-value=1.2e-11 Score=105.92 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=67.3
Q ss_pred CCCeEEEECCcchHHHHHhc-------CceEEEecCC-----------------CCCcEEEccCCCCCCCCCceeEEEEc
Q 027441 141 PSLVIADFGCGDARLAKSVK-------NKVFSFDLVS-----------------NDPSVIACDMSNTPLNSSSVDVAVFC 196 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-------~~v~gvDis~-----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~ 196 (223)
+..+|||||||+|.++..+. .+++++|+++ .++.|..+|+.+.+-..+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 66899999999886544322 4699999996 35889999998764335789999999
Q ss_pred ccccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441 197 LSLMGI---NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 197 ~~l~~~---d~~~~l~e~~rvLkpgG~lvi 223 (223)
+++++ ++..++..+.++|+|||.|++
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvl 231 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLML 231 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEE
Confidence 88877 778999999999999999985
No 70
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.29 E-value=1.1e-11 Score=98.57 Aligned_cols=92 Identities=21% Similarity=0.397 Sum_probs=70.9
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCc
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSS 189 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~s 189 (223)
..+++++... +..+|||+|||+|.++..++ .+|+++|+++ .++.++.+|+.... ++..
T Consensus 21 ~lL~~~l~~~-~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~-~~~~ 98 (170)
T PF05175_consen 21 RLLLDNLPKH-KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL-PDGK 98 (170)
T ss_dssp HHHHHHHHHH-TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC-CTTC
T ss_pred HHHHHHHhhc-cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc-cccc
Confidence 4567777765 77899999999999999887 2599999997 23667788875532 3789
Q ss_pred eeEEEEcccccCC-C-----HHHHHHHHHHccCCCCEEEc
Q 027441 190 VDVAVFCLSLMGI-N-----FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 190 fD~Vi~~~~l~~~-d-----~~~~l~e~~rvLkpgG~lvi 223 (223)
||+|++.--++.- + ...++.++.++|+|||.|++
T Consensus 99 fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 99 FDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp EEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 9999999877644 2 35899999999999999864
No 71
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.29 E-value=1.5e-11 Score=101.38 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=68.4
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc---C---ceEEEecCC---------------CCCcEEEccCCCCCCCCC
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---N---KVFSFDLVS---------------NDPSVIACDMSNTPLNSS 188 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~---~v~gvDis~---------------~~~~~~~~d~~~lp~~~~ 188 (223)
..+++.+... ++.+|||||||+|.++..++ . +|+++|+++ .++.++.+|+........
T Consensus 67 ~~~~~~l~~~-~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 67 AMMTELLELK-PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHHhCCC-CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 4555665544 77899999999999998876 2 399999996 357788889876554557
Q ss_pred ceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 189 sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
.||+|++.....++ ...+.+.|+|||+|++
T Consensus 146 ~fD~Ii~~~~~~~~-----~~~~~~~L~~gG~lv~ 175 (215)
T TIGR00080 146 PYDRIYVTAAGPKI-----PEALIDQLKEGGILVM 175 (215)
T ss_pred CCCEEEEcCCcccc-----cHHHHHhcCcCcEEEE
Confidence 89999988775543 4567889999999875
No 72
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.29 E-value=5.6e-12 Score=102.37 Aligned_cols=83 Identities=17% Similarity=0.303 Sum_probs=67.2
Q ss_pred CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCC---CCCCceeEEEEcc
Q 027441 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTP---LNSSSVDVAVFCL 197 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp---~~~~sfD~Vi~~~ 197 (223)
...+|||||||+|.++..++ ..|+|+|++. .++.++.+|+..++ +++++||.|++.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 45689999999999998887 4799999997 36788899987653 4567999999887
Q ss_pred cccCC---------CHHHHHHHHHHccCCCCEEEc
Q 027441 198 SLMGI---------NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 198 ~l~~~---------d~~~~l~e~~rvLkpgG~lvi 223 (223)
...|. ..+.++.++.++|+|||.|++
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~ 130 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHF 130 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEE
Confidence 65443 125799999999999999975
No 73
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.28 E-value=1.6e-11 Score=101.25 Aligned_cols=83 Identities=19% Similarity=0.281 Sum_probs=70.0
Q ss_pred CCCeEEEECCcchHHHHHhc---CceEEEecCC--------------C-CCcEEEccCCCCCCC-CCceeEEEEcccccC
Q 027441 141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------------N-DPSVIACDMSNTPLN-SSSVDVAVFCLSLMG 201 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~--------------~-~~~~~~~d~~~lp~~-~~sfD~Vi~~~~l~~ 201 (223)
.+.+|||+|||+|.++..++ ..++++|+++ . ++.+..+|+..++.. .++||+|++..+++|
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 47899999999999888775 5799999986 1 356677777766654 378999999999999
Q ss_pred C-CHHHHHHHHHHccCCCCEEEc
Q 027441 202 I-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 202 ~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
+ ++..++.++.++|+|||.+++
T Consensus 125 ~~~~~~~l~~~~~~L~~gG~l~i 147 (224)
T TIGR01983 125 VPDPQAFIRACAQLLKPGGILFF 147 (224)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEE
Confidence 9 899999999999999999874
No 74
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.25 E-value=1.9e-12 Score=105.82 Aligned_cols=83 Identities=18% Similarity=0.284 Sum_probs=67.6
Q ss_pred CCCeEEEECCcchHHHHHhc---CceEEEecCCCCC----------cEEEccCCCC-C-CCCCceeEEEEcccccCC-CH
Q 027441 141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVSNDP----------SVIACDMSNT-P-LNSSSVDVAVFCLSLMGI-NF 204 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~~~----------~~~~~d~~~l-p-~~~~sfD~Vi~~~~l~~~-d~ 204 (223)
+..++||+|||||..+..|. .+++|||||...+ ...++++..+ + .....||+|++..|+.++ +.
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~L 204 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGAL 204 (287)
T ss_pred ccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcch
Confidence 46899999999999888776 6899999997222 2334454432 2 456889999999999999 99
Q ss_pred HHHHHHHHHccCCCCEEEc
Q 027441 205 PNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 205 ~~~l~e~~rvLkpgG~lvi 223 (223)
+.++..+...|.|||.|.|
T Consensus 205 e~~~~~aa~~L~~gGlfaF 223 (287)
T COG4976 205 EGLFAGAAGLLAPGGLFAF 223 (287)
T ss_pred hhHHHHHHHhcCCCceEEE
Confidence 9999999999999999975
No 75
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.25 E-value=2.8e-11 Score=104.83 Aligned_cols=91 Identities=18% Similarity=0.210 Sum_probs=70.8
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCc
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSS 189 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~s 189 (223)
+.+.+.+.. .+..+|||||||+|.++..++ .+++++|+.. .++.++.+|+...+++.
T Consensus 139 ~~l~~~~~~-~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~-- 215 (306)
T TIGR02716 139 QLLLEEAKL-DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE-- 215 (306)
T ss_pred HHHHHHcCC-CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--
Confidence 334444432 366899999999999998886 3688999743 34678899987766653
Q ss_pred eeEEEEcccccCCCH---HHHHHHHHHccCCCCEEEc
Q 027441 190 VDVAVFCLSLMGINF---PNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 190 fD~Vi~~~~l~~~d~---~~~l~e~~rvLkpgG~lvi 223 (223)
+|+|+++.++|+.+. ..+|.+++++|+|||.|+|
T Consensus 216 ~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i 252 (306)
T TIGR02716 216 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLI 252 (306)
T ss_pred CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEE
Confidence 699999999998843 4799999999999999975
No 76
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.23 E-value=5.4e-11 Score=95.86 Aligned_cols=87 Identities=16% Similarity=0.178 Sum_probs=65.6
Q ss_pred HHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCcee
Q 027441 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVD 191 (223)
Q Consensus 132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD 191 (223)
++..+... ++.+|||||||+|.++..++ .+|+++|+++ .++.++.+|+. .++ ...||
T Consensus 23 ~~~~l~~~-~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D 99 (187)
T PRK08287 23 ALSKLELH-RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKAD 99 (187)
T ss_pred HHHhcCCC-CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCC
Confidence 33444333 67899999999999988775 4799999997 24556666763 233 35799
Q ss_pred EEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 192 VAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 192 ~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
+|++....+ ....++..+.++|+|||.|++
T Consensus 100 ~v~~~~~~~--~~~~~l~~~~~~Lk~gG~lv~ 129 (187)
T PRK08287 100 AIFIGGSGG--NLTAIIDWSLAHLHPGGRLVL 129 (187)
T ss_pred EEEECCCcc--CHHHHHHHHHHhcCCCeEEEE
Confidence 999876643 356789999999999999975
No 77
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.23 E-value=4.6e-11 Score=106.06 Aligned_cols=92 Identities=17% Similarity=0.207 Sum_probs=69.0
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCCC------------------CCcEEEccCCCCCCC
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN------------------DPSVIACDMSNTPLN 186 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~~------------------~~~~~~~d~~~lp~~ 186 (223)
..+++++... ...+|||||||+|.++..++ .+|+++|+|+. ++.+...|+... ++
T Consensus 218 rllL~~lp~~-~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~ 295 (378)
T PRK15001 218 RFFMQHLPEN-LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VE 295 (378)
T ss_pred HHHHHhCCcc-cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CC
Confidence 4566666543 34699999999999998886 47999999960 235666666332 34
Q ss_pred CCceeEEEEcccccCC------CHHHHHHHHHHccCCCCEEEc
Q 027441 187 SSSVDVAVFCLSLMGI------NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 187 ~~sfD~Vi~~~~l~~~------d~~~~l~e~~rvLkpgG~lvi 223 (223)
..+||+|+|.-.+|.. ....+|.++.++|+|||.|+|
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~i 338 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYI 338 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEE
Confidence 5689999998777643 134889999999999999985
No 78
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.23 E-value=4.5e-11 Score=105.10 Aligned_cols=91 Identities=19% Similarity=0.255 Sum_probs=69.7
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC--------------CCCcEEEccCCCCCCCCCce
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSV 190 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sf 190 (223)
..+++.+... ...+|||+|||+|.++..++ .+|+++|+++ ....++.+|+... .++.|
T Consensus 186 ~lLl~~l~~~-~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~f 262 (342)
T PRK09489 186 QLLLSTLTPH-TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKGRF 262 (342)
T ss_pred HHHHHhcccc-CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCc
Confidence 4556666543 45689999999999998876 3799999996 1234566666442 25789
Q ss_pred eEEEEcccccCC------CHHHHHHHHHHccCCCCEEEc
Q 027441 191 DVAVFCLSLMGI------NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 191 D~Vi~~~~l~~~------d~~~~l~e~~rvLkpgG~lvi 223 (223)
|+|++...+|+. ....++.++.++|+|||.|+|
T Consensus 263 DlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 263 DMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred cEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 999999998863 346999999999999999975
No 79
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.23 E-value=4.3e-11 Score=106.16 Aligned_cols=92 Identities=20% Similarity=0.298 Sum_probs=72.2
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCC--CCCCC
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNT--PLNSS 188 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~l--p~~~~ 188 (223)
.+++.+... .+..+||||||+|.++..++ ..++|+|+++ .++.++.+|+..+ +++++
T Consensus 113 ~~~~~~~~~-~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFISKN-QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhcCC-CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 444555443 45789999999999999888 4799999995 4778889998654 57789
Q ss_pred ceeEEEEcccccCC-C------HHHHHHHHHHccCCCCEEEc
Q 027441 189 SVDVAVFCLSLMGI-N------FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 189 sfD~Vi~~~~l~~~-d------~~~~l~e~~rvLkpgG~lvi 223 (223)
++|.|++.+..-|. . .+.++.++.|+|+|||.+.|
T Consensus 192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence 99999987654443 1 15899999999999999875
No 80
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.22 E-value=5.3e-11 Score=98.42 Aligned_cols=89 Identities=19% Similarity=0.242 Sum_probs=66.8
Q ss_pred HHHHHHHhc--cCCCCeEEEECCcchHHHHHhc---CceEEEecCC----------------CCCcEEEccCCCCCCCCC
Q 027441 130 NIIVKWLKD--HSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSS 188 (223)
Q Consensus 130 ~~i~~~l~~--~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~ 188 (223)
+.++.++.. ..++.+|||||||+|.++..++ ..|+|+|+++ .++.+..+|+ +..++
T Consensus 50 ~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~~ 126 (230)
T PRK07580 50 DTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL---ESLLG 126 (230)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc---hhccC
Confidence 455666654 3367899999999999998887 4799999986 1456777773 34468
Q ss_pred ceeEEEEcccccCC---CHHHHHHHHHHccCCCCEE
Q 027441 189 SVDVAVFCLSLMGI---NFPNYLQEAQRVLKPRGEE 221 (223)
Q Consensus 189 sfD~Vi~~~~l~~~---d~~~~l~e~~rvLkpgG~l 221 (223)
+||+|++..+++|+ +...++..+.+.+++++++
T Consensus 127 ~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 127 RFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred CcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence 89999999999887 3347888888877655544
No 81
>PRK04266 fibrillarin; Provisional
Probab=99.21 E-value=6.8e-11 Score=98.30 Aligned_cols=82 Identities=15% Similarity=0.142 Sum_probs=62.1
Q ss_pred CCCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------CCCcEEEccCCCC----CCCCCceeEEEEcc
Q 027441 140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------NDPSVIACDMSNT----PLNSSSVDVAVFCL 197 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------~~~~~~~~d~~~l----p~~~~sfD~Vi~~~ 197 (223)
.++.+|||+|||+|.++..++ ..|+|+|+++ .++.++.+|+... ++. .+||+|++..
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~ 149 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQDV 149 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEECC
Confidence 377899999999999988887 3799999997 3677888888652 233 5699998643
Q ss_pred cccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 198 SLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 198 ~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
...+ ....++.++.++|||||.|+|
T Consensus 150 ~~p~-~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 150 AQPN-QAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred CChh-HHHHHHHHHHHhcCCCcEEEE
Confidence 3100 113568999999999999986
No 82
>PRK14967 putative methyltransferase; Provisional
Probab=99.20 E-value=1.3e-10 Score=96.35 Aligned_cols=98 Identities=19% Similarity=0.244 Sum_probs=68.8
Q ss_pred CCchHHHHHHHHhc--cCCCCeEEEECCcchHHHHHhc----CceEEEecCC--------------CCCcEEEccCCCCC
Q 027441 125 PELPVNIIVKWLKD--HSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSNTP 184 (223)
Q Consensus 125 p~~~~~~i~~~l~~--~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------------~~~~~~~~d~~~lp 184 (223)
|......+...+.. ..++.+|||+|||+|.++..++ .+|+++|+++ .++.++.+|+...
T Consensus 18 p~~ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~- 96 (223)
T PRK14967 18 PQEDTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA- 96 (223)
T ss_pred CCCcHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-
Confidence 33333344444432 2356899999999999988776 3799999997 1345667777553
Q ss_pred CCCCceeEEEEcccccCC-C---------------------HHHHHHHHHHccCCCCEEEc
Q 027441 185 LNSSSVDVAVFCLSLMGI-N---------------------FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 185 ~~~~sfD~Vi~~~~l~~~-d---------------------~~~~l~e~~rvLkpgG~lvi 223 (223)
+++++||+|++...+... . ...++.++.++|+|||.|++
T Consensus 97 ~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 97 VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 456789999997533321 1 34688899999999999975
No 83
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.20 E-value=7.9e-11 Score=96.70 Aligned_cols=87 Identities=18% Similarity=0.142 Sum_probs=65.4
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeE
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDV 192 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~ 192 (223)
.++..+... ++.+|||||||+|.++..++ .+|+++|+++ .++.+..+|........+.||+
T Consensus 69 ~l~~~l~~~-~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 147 (212)
T PRK00312 69 RMTELLELK-PGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDR 147 (212)
T ss_pred HHHHhcCCC-CCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCE
Confidence 344444433 67899999999999887665 5799999986 2467788887553333578999
Q ss_pred EEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 193 AVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 193 Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
|++...++++ ...+.+.|+|||.|++
T Consensus 148 I~~~~~~~~~-----~~~l~~~L~~gG~lv~ 173 (212)
T PRK00312 148 ILVTAAAPEI-----PRALLEQLKEGGILVA 173 (212)
T ss_pred EEEccCchhh-----hHHHHHhcCCCcEEEE
Confidence 9998876554 4567899999999875
No 84
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.18 E-value=6.1e-11 Score=96.51 Aligned_cols=83 Identities=18% Similarity=0.340 Sum_probs=68.7
Q ss_pred CCCeEEEECCcchHHHHHhc---CceEEEecCCC----------CCcEEEccC-CCCCCCCCceeEEEEcccccCC---C
Q 027441 141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVSN----------DPSVIACDM-SNTPLNSSSVDVAVFCLSLMGI---N 203 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~----------~~~~~~~d~-~~lp~~~~sfD~Vi~~~~l~~~---d 203 (223)
...-|||||||+|..+..|. ..++|+|||+. .-+++.+|+ +.+||.+++||.||+..++.|+ |
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~ 129 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNAD 129 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecccC
Confidence 35789999999999998887 36789999982 235778888 5699999999999999998876 2
Q ss_pred -----H----HHHHHHHHHccCCCCEEEc
Q 027441 204 -----F----PNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 204 -----~----~~~l~e~~rvLkpgG~lvi 223 (223)
+ -.|+..++.+|++|+..++
T Consensus 130 ~s~~~P~~Rl~~FF~tLy~~l~rg~raV~ 158 (270)
T KOG1541|consen 130 KSLHVPKKRLLRFFGTLYSCLKRGARAVL 158 (270)
T ss_pred ccccChHHHHHHHhhhhhhhhccCceeEE
Confidence 1 1788999999999998764
No 85
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.17 E-value=2.4e-10 Score=94.79 Aligned_cols=108 Identities=19% Similarity=0.137 Sum_probs=81.3
Q ss_pred hHHhhhccCC-CchHHHHHHHHhcc--CCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------------
Q 027441 116 GYQEQMSHWP-ELPVNIIVKWLKDH--SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS------------------- 170 (223)
Q Consensus 116 ~~~~~~~~~p-~~~~~~i~~~l~~~--~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~------------------- 170 (223)
.|......|. ..+-..+.+++... .++.+||+.|||.|.-+.+|+ -.|+|+|+|+
T Consensus 15 rw~~~~~~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~ 94 (226)
T PRK13256 15 RWQNDDVGFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHG 94 (226)
T ss_pred HHhcCCCCCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecc
Confidence 3444344552 23334444555433 245899999999999999998 4799999996
Q ss_pred --------CCCcEEEccCCCCCCC---CCceeEEEEcccccCCCH---HHHHHHHHHccCCCCEEEc
Q 027441 171 --------NDPSVIACDMSNTPLN---SSSVDVAVFCLSLMGINF---PNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 171 --------~~~~~~~~d~~~lp~~---~~sfD~Vi~~~~l~~~d~---~~~l~e~~rvLkpgG~lvi 223 (223)
..+.+.++|+..++.. .+.||+|+-..+|+++++ ..++..+.++|+|||.+++
T Consensus 95 ~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 95 NDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred cccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 1567889999988642 268999999999999944 4999999999999999874
No 86
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.17 E-value=9.9e-11 Score=95.27 Aligned_cols=81 Identities=17% Similarity=0.250 Sum_probs=63.3
Q ss_pred CCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCC-CCCCCceeEEEEcc
Q 027441 141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNT-PLNSSSVDVAVFCL 197 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~l-p~~~~sfD~Vi~~~ 197 (223)
++.+|||+|||+|.++..++ .+|+++|+++ .++.++.+|+... +.....||+|++..
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 77899999999999887653 4799999996 2456777777653 33346899999854
Q ss_pred cccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 198 SLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 198 ~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
. ..++..++.++.++|+|||.|++
T Consensus 120 ~--~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 120 G--SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred C--cccHHHHHHHHHHHcCCCcEEEE
Confidence 2 22678999999999999999875
No 87
>PTZ00146 fibrillarin; Provisional
Probab=99.16 E-value=2.2e-10 Score=98.04 Aligned_cols=82 Identities=18% Similarity=0.131 Sum_probs=64.3
Q ss_pred CCCCeEEEECCcchHHHHHhc------CceEEEecCC-------------CCCcEEEccCCC---CCCCCCceeEEEEcc
Q 027441 140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSN---TPLNSSSVDVAVFCL 197 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~-------------~~~~~~~~d~~~---lp~~~~sfD~Vi~~~ 197 (223)
.++.+|||+|||+|.++..++ ..|+++|+++ .++.++.+|+.. +++...+||+|++..
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv 210 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADV 210 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeC
Confidence 377899999999999998887 3699999985 467788888754 222345799999887
Q ss_pred cccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 198 SLMGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 198 ~l~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
+ .. +...++.++.++|||||.|+|
T Consensus 211 a--~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 211 A--QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred C--CcchHHHHHHHHHHhccCCCEEEE
Confidence 5 23 334667799999999999986
No 88
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.15 E-value=1.2e-10 Score=100.29 Aligned_cols=79 Identities=20% Similarity=0.217 Sum_probs=59.2
Q ss_pred CCCeEEEECCcchHHHHHhc----CceEEEecCCC----------------CCcEEEccCCCCCCCCCceeEEEEccccc
Q 027441 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSN----------------DPSVIACDMSNTPLNSSSVDVAVFCLSLM 200 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~~----------------~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~ 200 (223)
++.+|||+|||+|.++..++ .+|+|+|+++. .+.+...+. .++.++.||+|++....+
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~--~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL--EQPIEGKADVIVANILAE 236 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc--ccccCCCceEEEEecCHH
Confidence 56899999999999887765 47999999971 122333332 233467899999876533
Q ss_pred CCCHHHHHHHHHHccCCCCEEEc
Q 027441 201 GINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 201 ~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
....++.++.++|+|||+|++
T Consensus 237 --~l~~ll~~~~~~LkpgG~li~ 257 (288)
T TIGR00406 237 --VIKELYPQFSRLVKPGGWLIL 257 (288)
T ss_pred --HHHHHHHHHHHHcCCCcEEEE
Confidence 235789999999999999985
No 89
>PRK14968 putative methyltransferase; Provisional
Probab=99.14 E-value=2.7e-10 Score=91.05 Aligned_cols=91 Identities=23% Similarity=0.373 Sum_probs=67.4
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CC--CcEEEccCCCCCCCCCce
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------ND--PSVIACDMSNTPLNSSSV 190 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~--~~~~~~d~~~lp~~~~sf 190 (223)
.+.+.+... ++.+|||+|||+|.++..++ .+|+++|+++ .+ +.++.+|+.. ++.+..|
T Consensus 14 ~l~~~~~~~-~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~ 91 (188)
T PRK14968 14 LLAENAVDK-KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKF 91 (188)
T ss_pred HHHHhhhcc-CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCc
Confidence 344555443 67899999999999988887 6899999997 11 5667777755 3445589
Q ss_pred eEEEEcccccCC----------------------CHHHHHHHHHHccCCCCEEEc
Q 027441 191 DVAVFCLSLMGI----------------------NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 191 D~Vi~~~~l~~~----------------------d~~~~l~e~~rvLkpgG~lvi 223 (223)
|+|++...+.+. ....++.++.++|+|||.+++
T Consensus 92 d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~ 146 (188)
T PRK14968 92 DVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL 146 (188)
T ss_pred eEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 999987554321 134689999999999998864
No 90
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.14 E-value=5.3e-10 Score=96.78 Aligned_cols=83 Identities=14% Similarity=0.209 Sum_probs=61.2
Q ss_pred CCCeEEEECCcchHHHHHhc------CceEEEecCC--------------CC--CcEEEccCCC-CCCCCC----ceeEE
Q 027441 141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS--------------ND--PSVIACDMSN-TPLNSS----SVDVA 193 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la------~~v~gvDis~--------------~~--~~~~~~d~~~-lp~~~~----sfD~V 193 (223)
++.+|||+|||+|..+..|. .+|+++|+|+ +. +.++++|+.+ +++... ...++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 56789999999999877665 3699999997 12 3456889876 444332 23344
Q ss_pred EEcccccCCCH---HHHHHHHHHccCCCCEEEc
Q 027441 194 VFCLSLMGINF---PNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 194 i~~~~l~~~d~---~~~l~e~~rvLkpgG~lvi 223 (223)
++..+++++++ ..+|.+++++|+|||.|+|
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 45566777754 4789999999999999985
No 91
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.13 E-value=2.1e-10 Score=80.99 Aligned_cols=80 Identities=29% Similarity=0.505 Sum_probs=66.5
Q ss_pred eEEEECCcchHHHHHhc----CceEEEecCC---------------CCCcEEEccCCCCCC-CCCceeEEEEcccccC-C
Q 027441 144 VIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPL-NSSSVDVAVFCLSLMG-I 202 (223)
Q Consensus 144 ~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~~~~~~~~d~~~lp~-~~~sfD~Vi~~~~l~~-~ 202 (223)
+|||+|||+|..+..+. .+++++|+++ ..+.++..|+...+. ....||+|++..++++ .
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 48999999999888776 4799999986 245667778776653 5678999999999998 5
Q ss_pred -CHHHHHHHHHHccCCCCEEEc
Q 027441 203 -NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 203 -d~~~~l~e~~rvLkpgG~lvi 223 (223)
....++..+.++|+|||.+++
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~ 102 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVL 102 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEE
Confidence 778999999999999999975
No 92
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.13 E-value=3.3e-11 Score=89.26 Aligned_cols=82 Identities=24% Similarity=0.347 Sum_probs=65.4
Q ss_pred CCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCC--CCCCceeEEEEcccc
Q 027441 142 SLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTP--LNSSSVDVAVFCLSL 199 (223)
Q Consensus 142 ~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~~~l 199 (223)
+.+|||+|||+|.++..++ .+++|+|+++ .++.++++|+..++ +.+.+||+|+++--+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 3589999999999887775 5899999997 35788999997765 778999999998777
Q ss_pred cCC---------CHHHHHHHHHHccCCCCEEEc
Q 027441 200 MGI---------NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 200 ~~~---------d~~~~l~e~~rvLkpgG~lvi 223 (223)
... ....++.++.++|+|||.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 632 135889999999999999875
No 93
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.11 E-value=4.1e-10 Score=98.61 Aligned_cols=85 Identities=25% Similarity=0.219 Sum_probs=68.3
Q ss_pred cCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEccccc
Q 027441 139 HSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM 200 (223)
Q Consensus 139 ~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~ 200 (223)
..++..|||+|||+|.++..++ ..|+|+|+++ .++.+..+|+.++|+.+++||+|++..-+.
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYG 259 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCc
Confidence 3477899999999999877654 6899999997 235788999999998888999999963221
Q ss_pred -------C-C-C-HHHHHHHHHHccCCCCEEEc
Q 027441 201 -------G-I-N-FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 201 -------~-~-d-~~~~l~e~~rvLkpgG~lvi 223 (223)
+ . + ...++.++.++|+|||++++
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~ 292 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVY 292 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEE
Confidence 1 1 1 46899999999999999874
No 94
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.08 E-value=2.7e-10 Score=90.26 Aligned_cols=82 Identities=22% Similarity=0.309 Sum_probs=68.3
Q ss_pred CCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEccccc
Q 027441 142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM 200 (223)
Q Consensus 142 ~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~ 200 (223)
..+|||+|||.|.+...|+ ..++|+|.|+ ..+.|.+.|+....+..+.||+|+--..+.
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 3499999999999999988 4589999997 238899999998888889999998766655
Q ss_pred CC---------CHHHHHHHHHHccCCCCEEEc
Q 027441 201 GI---------NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 201 ~~---------d~~~~l~e~~rvLkpgG~lvi 223 (223)
.+ -+..++..+.++|+|||+|+|
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvI 179 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVI 179 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEE
Confidence 43 123788899999999999987
No 95
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.08 E-value=8.3e-10 Score=92.36 Aligned_cols=82 Identities=22% Similarity=0.386 Sum_probs=63.3
Q ss_pred CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEccccc
Q 027441 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM 200 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~ 200 (223)
...+|||+|||+|.++..++ ..|+|+|+++ .++.++.+|+.. ++++++||+|++.-.+.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence 34689999999999988887 3799999997 246788888865 45678999999854322
Q ss_pred C------C---------------------CHHHHHHHHHHccCCCCEEEc
Q 027441 201 G------I---------------------NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 201 ~------~---------------------d~~~~l~e~~rvLkpgG~lvi 223 (223)
. + ....++.++.++|+|||.+++
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence 1 1 123678999999999999985
No 96
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.07 E-value=6.1e-10 Score=90.40 Aligned_cols=89 Identities=19% Similarity=0.260 Sum_probs=63.6
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCC-CCCCCCc
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSN-TPLNSSS 189 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~-lp~~~~s 189 (223)
.++..+.. .++.+|||+|||+|.++..++ .+|+++|+++ .++.++.+|+.. ++.....
T Consensus 31 ~l~~~l~~-~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 31 LLISQLRL-EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHHhcCC-CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence 34555543 367899999999999988775 4799999996 246677777754 2222233
Q ss_pred eeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 190 VDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 190 fD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
+|.|+... ..++..++.++.++|+|||.|++
T Consensus 110 ~d~v~~~~---~~~~~~~l~~~~~~LkpgG~li~ 140 (196)
T PRK07402 110 PDRVCIEG---GRPIKEILQAVWQYLKPGGRLVA 140 (196)
T ss_pred CCEEEEEC---CcCHHHHHHHHHHhcCCCeEEEE
Confidence 56665432 12678999999999999999875
No 97
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.07 E-value=6e-10 Score=96.89 Aligned_cols=89 Identities=19% Similarity=0.268 Sum_probs=63.7
Q ss_pred HHHHHHHhcc--CCCCeEEEECCcchHHHHHhc---CceEEEecCCC--------------------CCcEEEccCCCCC
Q 027441 130 NIIVKWLKDH--SPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN--------------------DPSVIACDMSNTP 184 (223)
Q Consensus 130 ~~i~~~l~~~--~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~--------------------~~~~~~~d~~~lp 184 (223)
+.+++++... .++.+|||||||+|.++..++ .+|+|+|+|+. ++.|..+|+..+
T Consensus 131 ~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l- 209 (315)
T PLN02585 131 EKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL- 209 (315)
T ss_pred HHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-
Confidence 4556666542 256799999999999998887 47999999971 234556666543
Q ss_pred CCCCceeEEEEcccccCCCH---HHHHHHHHHccCCCCEEE
Q 027441 185 LNSSSVDVAVFCLSLMGINF---PNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 185 ~~~~sfD~Vi~~~~l~~~d~---~~~l~e~~rvLkpgG~lv 222 (223)
+++||+|+|..+++|+.. ..++..+.+ +.+||+++
T Consensus 210 --~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 210 --SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred --CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 578999999999998832 245666654 45666654
No 98
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.06 E-value=2.2e-10 Score=90.26 Aligned_cols=52 Identities=23% Similarity=0.294 Sum_probs=49.1
Q ss_pred CCcEEEccCCCCCCCCCceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 172 DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 172 ~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
++.++++|+.++|+++++||+|++.++++|+ |+..++.+++|+|||||.|+|
T Consensus 27 ~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 27 CIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred ceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEE
Confidence 5789999999999999999999999999998 999999999999999999975
No 99
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.05 E-value=1.2e-09 Score=93.73 Aligned_cols=80 Identities=23% Similarity=0.299 Sum_probs=61.3
Q ss_pred CeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcc----
Q 027441 143 LVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCL---- 197 (223)
Q Consensus 143 ~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~---- 197 (223)
.+|||+|||+|.++..++ .+|+|+|+|+ .++.++.+|+.. +++...||+|++.-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence 689999999999988887 3799999997 136788888765 34445899999851
Q ss_pred ---------cccCC-------------CHHHHHHHHHHccCCCCEEEc
Q 027441 198 ---------SLMGI-------------NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 198 ---------~l~~~-------------d~~~~l~e~~rvLkpgG~lvi 223 (223)
++.|- ....++..+.++|+|||+|++
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 22221 134788999999999999975
No 100
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.05 E-value=2.3e-10 Score=93.75 Aligned_cols=82 Identities=22% Similarity=0.300 Sum_probs=71.6
Q ss_pred CCCeEEEECCcchHHHHHhc----CceEEEecCC-----------C--CCcEEEccCCCCCCCCCceeEEEEcccccCC-
Q 027441 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS-----------N--DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI- 202 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~-----------~--~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~- 202 (223)
....++|||||-|.++..|. .+++-+|.|. + .....++|-+.++|.+++||+|+++.++||+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~N 151 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTN 151 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhhc
Confidence 34679999999999999887 4678888885 1 2245688999999999999999999999999
Q ss_pred CHHHHHHHHHHccCCCCEEE
Q 027441 203 NFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 203 d~~~~l~e~~rvLkpgG~lv 222 (223)
|.|..+..+.-.|||+|.|+
T Consensus 152 dLPg~m~~ck~~lKPDg~Fi 171 (325)
T KOG2940|consen 152 DLPGSMIQCKLALKPDGLFI 171 (325)
T ss_pred cCchHHHHHHHhcCCCccch
Confidence 99999999999999999886
No 101
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.05 E-value=5e-10 Score=93.64 Aligned_cols=93 Identities=19% Similarity=0.293 Sum_probs=72.3
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCCC--CCC
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTP--LNS 187 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~lp--~~~ 187 (223)
.++..........+|||+|||+|.++..++ .+++|||+.+ .++.++.+|+.++. ...
T Consensus 34 iLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~ 113 (248)
T COG4123 34 ILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF 113 (248)
T ss_pred HHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc
Confidence 344444434357999999999999999998 4689999996 57889999997754 344
Q ss_pred CceeEEEEcccc----------------cCC---CHHHHHHHHHHccCCCCEEEc
Q 027441 188 SSVDVAVFCLSL----------------MGI---NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 188 ~sfD~Vi~~~~l----------------~~~---d~~~~l~e~~rvLkpgG~lvi 223 (223)
.+||+|+|.=-+ +|. +.+.++..+.++|||||.|.+
T Consensus 114 ~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 114 ASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred cccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence 579999987433 222 577999999999999999874
No 102
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=6e-10 Score=90.68 Aligned_cols=90 Identities=19% Similarity=0.209 Sum_probs=71.5
Q ss_pred hHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCCCCCCCc
Q 027441 128 PVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSS 189 (223)
Q Consensus 128 ~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~s 189 (223)
.+..+++.|... ++.+|||||||+|+.+..|+ .+|+++|..+ .++.+.++|...-.-+.+.
T Consensus 60 ~vA~m~~~L~~~-~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 60 MVARMLQLLELK-PGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred HHHHHHHHhCCC-CCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence 455677777665 88999999999999888887 7899999986 4788889998765446689
Q ss_pred eeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 190 VDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 190 fD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
||.|+...+...+ -..+.+-|+|||.|++
T Consensus 139 yD~I~Vtaaa~~v-----P~~Ll~QL~~gGrlv~ 167 (209)
T COG2518 139 YDRIIVTAAAPEV-----PEALLDQLKPGGRLVI 167 (209)
T ss_pred cCEEEEeeccCCC-----CHHHHHhcccCCEEEE
Confidence 9999988886443 2335667999999985
No 103
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.04 E-value=9.5e-11 Score=105.55 Aligned_cols=82 Identities=23% Similarity=0.290 Sum_probs=62.7
Q ss_pred CCeEEEECCcchHHHHHhc-CceEEEecCCC-----CCcEE----------EccCCCCCCCCCceeEEEEcccccCC--C
Q 027441 142 SLVIADFGCGDARLAKSVK-NKVFSFDLVSN-----DPSVI----------ACDMSNTPLNSSSVDVAVFCLSLMGI--N 203 (223)
Q Consensus 142 ~~~ILDiGcG~G~~a~~la-~~v~gvDis~~-----~~~~~----------~~d~~~lp~~~~sfD~Vi~~~~l~~~--d 203 (223)
-..+||+|||+|.++.+|. ..|+.+-+.+. .+.|. +.-...+||++++||+|+|+..+... +
T Consensus 118 iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~ 197 (506)
T PF03141_consen 118 IRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPN 197 (506)
T ss_pred eEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhc
Confidence 3689999999999999988 45666655542 22221 12236799999999999999988733 3
Q ss_pred HHHHHHHHHHccCCCCEEEc
Q 027441 204 FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 204 ~~~~l~e~~rvLkpgG~lvi 223 (223)
-..+|-|+.|+|+|||+|++
T Consensus 198 ~g~~l~evdRvLRpGGyfv~ 217 (506)
T PF03141_consen 198 DGFLLFEVDRVLRPGGYFVL 217 (506)
T ss_pred ccceeehhhhhhccCceEEe
Confidence 35899999999999999974
No 104
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.04 E-value=4.9e-10 Score=94.45 Aligned_cols=81 Identities=23% Similarity=0.311 Sum_probs=56.3
Q ss_pred CCCeEEEECCcchHHHHHhc----CceEEEecCCCCCcEEEc--------cCCCCCCCCCceeEEEEcccccCCCHHHHH
Q 027441 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSNDPSVIAC--------DMSNTPLNSSSVDVAVFCLSLMGINFPNYL 208 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~~~~~~~~~--------d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~l 208 (223)
++.+|||+|||+|.++..++ .+|+|+|+++..+..... +...++..+.+||+|++....+ ....++
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~~--~~~~l~ 196 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILAN--PLLELA 196 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcHH--HHHHHH
Confidence 67899999999999888765 359999999832211100 1111222233799999875432 235788
Q ss_pred HHHHHccCCCCEEEc
Q 027441 209 QEAQRVLKPRGEEQI 223 (223)
Q Consensus 209 ~e~~rvLkpgG~lvi 223 (223)
.++.++|+|||.|++
T Consensus 197 ~~~~~~LkpgG~lil 211 (250)
T PRK00517 197 PDLARLLKPGGRLIL 211 (250)
T ss_pred HHHHHhcCCCcEEEE
Confidence 999999999999985
No 105
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.03 E-value=2e-10 Score=94.34 Aligned_cols=89 Identities=19% Similarity=0.205 Sum_probs=64.6
Q ss_pred HHHHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCCCCC
Q 027441 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNS 187 (223)
Q Consensus 129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp~~~ 187 (223)
+..+++++... ++.+|||||||+|+.+..|+ ..|+++|+.+ .++.++.+|.....-..
T Consensus 61 ~a~~l~~L~l~-pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALDLK-PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTTC--TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHHhcC-CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 34667777644 88999999999999988887 2588999987 47788999976543346
Q ss_pred CceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 188 ~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
+.||.|++..+...+ -..+.+.|++||+|++
T Consensus 140 apfD~I~v~~a~~~i-----p~~l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 140 APFDRIIVTAAVPEI-----PEALLEQLKPGGRLVA 170 (209)
T ss_dssp -SEEEEEESSBBSS-------HHHHHTEEEEEEEEE
T ss_pred CCcCEEEEeeccchH-----HHHHHHhcCCCcEEEE
Confidence 789999999887533 2347778999999985
No 106
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.03 E-value=1.1e-09 Score=95.42 Aligned_cols=86 Identities=14% Similarity=0.151 Sum_probs=64.5
Q ss_pred HHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCCCCCCce
Q 027441 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSV 190 (223)
Q Consensus 132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sf 190 (223)
+++.+.. .++.+|||||||+|.++..++ ..|+++|+++ .++.++.+|+...+.....|
T Consensus 72 ll~~L~i-~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~f 150 (322)
T PRK13943 72 FMEWVGL-DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPY 150 (322)
T ss_pred HHHhcCC-CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCc
Confidence 3444433 367899999999999988876 2599999997 24677888887665555789
Q ss_pred eEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 191 DVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 191 D~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
|+|++...+.+ ....+.++|+|||.+++
T Consensus 151 D~Ii~~~g~~~-----ip~~~~~~LkpgG~Lvv 178 (322)
T PRK13943 151 DVIFVTVGVDE-----VPETWFTQLKEGGRVIV 178 (322)
T ss_pred cEEEECCchHH-----hHHHHHHhcCCCCEEEE
Confidence 99999876543 33457789999999874
No 107
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.03 E-value=1.7e-09 Score=86.38 Aligned_cols=89 Identities=19% Similarity=0.233 Sum_probs=71.0
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCce
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSV 190 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sf 190 (223)
..+..|... ++..++|||||+|..+..++ .+|+++|-++ .++.++.+++...-....+|
T Consensus 25 l~ls~L~~~-~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~ 103 (187)
T COG2242 25 LTLSKLRPR-PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSP 103 (187)
T ss_pred HHHHhhCCC-CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCC
Confidence 344555555 78999999999999988877 5899999876 57788888885532122279
Q ss_pred eEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 191 DVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 191 D~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
|.|+.... .+.+.+|+.+...|+|||.|++
T Consensus 104 daiFIGGg---~~i~~ile~~~~~l~~ggrlV~ 133 (187)
T COG2242 104 DAIFIGGG---GNIEEILEAAWERLKPGGRLVA 133 (187)
T ss_pred CEEEECCC---CCHHHHHHHHHHHcCcCCeEEE
Confidence 99998888 5678999999999999999984
No 108
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.02 E-value=7.8e-10 Score=89.97 Aligned_cols=83 Identities=16% Similarity=0.184 Sum_probs=56.9
Q ss_pred CCCeEEEECCcchH--HH--HHhc-------C---ceEEEecCC------------------------------------
Q 027441 141 PSLVIADFGCGDAR--LA--KSVK-------N---KVFSFDLVS------------------------------------ 170 (223)
Q Consensus 141 ~~~~ILDiGcG~G~--~a--~~la-------~---~v~gvDis~------------------------------------ 170 (223)
...+||..||++|. ++ ..+. . +|+|+|+++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45899999999997 22 2222 1 689999995
Q ss_pred -------CCCcEEEccCCCCCCCCCceeEEEEcccccCCCHH---HHHHHHHHccCCCCEEEc
Q 027441 171 -------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFP---NYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 171 -------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~---~~l~e~~rvLkpgG~lvi 223 (223)
..+.|...|+.+.+...+.||+|+|.+||.|++.+ .++..+++.|+|||+|++
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFL 173 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 45678888888744456889999999999999655 999999999999999985
No 109
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.01 E-value=3.6e-10 Score=93.14 Aligned_cols=81 Identities=22% Similarity=0.412 Sum_probs=64.5
Q ss_pred CeEEEECCcchHHHHHhc-------CceEEEecCC--------------CCCcEEEccCCC----CCCCCCceeEEEEcc
Q 027441 143 LVIADFGCGDARLAKSVK-------NKVFSFDLVS--------------NDPSVIACDMSN----TPLNSSSVDVAVFCL 197 (223)
Q Consensus 143 ~~ILDiGcG~G~~a~~la-------~~v~gvDis~--------------~~~~~~~~d~~~----lp~~~~sfD~Vi~~~ 197 (223)
.+||+||||.|.....+. -.|+++|.|+ .++...+.|+.. -|+..+++|+|++.+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 389999999998776665 2589999998 233344556533 356789999999999
Q ss_pred cccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441 198 SLMGI---NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 198 ~l~~~---d~~~~l~e~~rvLkpgG~lvi 223 (223)
+|..+ .+..++..+.++|||||.|++
T Consensus 153 vLSAi~pek~~~a~~nl~~llKPGG~llf 181 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLF 181 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCCCcEEEE
Confidence 99988 445999999999999999975
No 110
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=99.01 E-value=4.4e-10 Score=94.75 Aligned_cols=93 Identities=23% Similarity=0.374 Sum_probs=76.4
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc-CceEEEecCC--------CCC-cEEEccCCCCCCCCCceeEEEEccccc
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-NKVFSFDLVS--------NDP-SVIACDMSNTPLNSSSVDVAVFCLSLM 200 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-~~v~gvDis~--------~~~-~~~~~d~~~lp~~~~sfD~Vi~~~~l~ 200 (223)
...+++...+.+..+||+|||.|.+...-. ..++|+|++. .+. ....+|+.++|+.+.+||.+++..++|
T Consensus 35 ~v~qfl~~~~~gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavih 114 (293)
T KOG1331|consen 35 MVRQFLDSQPTGSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIH 114 (293)
T ss_pred HHHHHHhccCCcceeeecccCCcccCcCCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhh
Confidence 555666666678999999999998665432 4678899886 344 578899999999999999999999999
Q ss_pred CC----CHHHHHHHHHHccCCCCEEEc
Q 027441 201 GI----NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 201 ~~----d~~~~l~e~~rvLkpgG~lvi 223 (223)
|+ ....+++++.|+|+|||...|
T Consensus 115 hlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 115 HLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 99 345999999999999998653
No 111
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.99 E-value=9.6e-10 Score=90.93 Aligned_cols=92 Identities=21% Similarity=0.273 Sum_probs=72.0
Q ss_pred HHHHHHHhc--cCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------------------CCCcEEE
Q 027441 130 NIIVKWLKD--HSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------------------NDPSVIA 177 (223)
Q Consensus 130 ~~i~~~l~~--~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------------------~~~~~~~ 177 (223)
..+.+++.. ..++.+||..|||.|.-+..|+ -+|+|+|+|+ .++.+.+
T Consensus 24 p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (218)
T PF05724_consen 24 PALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC 103 (218)
T ss_dssp HHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE
T ss_pred HHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE
Confidence 344455443 3366799999999999999998 3799999997 2456788
Q ss_pred ccCCCCCCCC-CceeEEEEcccccCC---CHHHHHHHHHHccCCCCEE
Q 027441 178 CDMSNTPLNS-SSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPRGEE 221 (223)
Q Consensus 178 ~d~~~lp~~~-~sfD~Vi~~~~l~~~---d~~~~l~e~~rvLkpgG~l 221 (223)
+|+..++... ++||+|+-..+|+.+ ..+.+...+.++|+|||.+
T Consensus 104 gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~ 151 (218)
T PF05724_consen 104 GDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRG 151 (218)
T ss_dssp S-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEE
T ss_pred cccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcE
Confidence 9998877544 589999999998887 4569999999999999994
No 112
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.99 E-value=2.8e-09 Score=91.57 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=61.3
Q ss_pred CCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEccc-
Q 027441 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLS- 198 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~- 198 (223)
+..+|||+|||+|.++..++ .+|+|+|+|+ .++.++.+|+.. ++++.+||+|++.--
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 35789999999999998887 3799999996 246788888754 234568999998611
Q ss_pred -----c-------cCC-------------CHHHHHHHHHHccCCCCEEEc
Q 027441 199 -----L-------MGI-------------NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 199 -----l-------~~~-------------d~~~~l~e~~rvLkpgG~lvi 223 (223)
+ +|- ....++..+.++|+|||.|++
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1 111 124778999999999999975
No 113
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.99 E-value=3.2e-09 Score=88.80 Aligned_cols=81 Identities=26% Similarity=0.334 Sum_probs=66.3
Q ss_pred CCCCeEEEECCcchHHHHHhc-----CceEEEecCC--------CCCcEEEccCCCCCCCCCceeEEEEcccccCC---C
Q 027441 140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI---N 203 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~---d 203 (223)
....+|||||+|+|.++..++ .+++.+|+-. .++.++.+|+. -|++. +|+|+..++||+. +
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~~ 175 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDED 175 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HHH
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHH-hhhcc--ccceeeehhhhhcchHH
Confidence 355789999999999998887 4688888853 68899999998 66665 9999999999977 3
Q ss_pred HHHHHHHHHHccCCC--CEEEc
Q 027441 204 FPNYLQEAQRVLKPR--GEEQI 223 (223)
Q Consensus 204 ~~~~l~e~~rvLkpg--G~lvi 223 (223)
...+|+.+++.|+|| |.|+|
T Consensus 176 ~~~iL~~~~~al~pg~~g~llI 197 (241)
T PF00891_consen 176 CVKILRNAAAALKPGKDGRLLI 197 (241)
T ss_dssp HHHHHHHHHHHSEECTTEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCeEEE
Confidence 449999999999999 99986
No 114
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.97 E-value=2.5e-09 Score=91.57 Aligned_cols=82 Identities=17% Similarity=0.212 Sum_probs=65.7
Q ss_pred CCCeEEEECCcchHHHHHhc----CceEEEecCCC---------------------CCcEEEccCCC------CCCCCCc
Q 027441 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVSN---------------------DPSVIACDMSN------TPLNSSS 189 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~~---------------------~~~~~~~d~~~------lp~~~~s 189 (223)
++..+||+|||-|.-+.... ..++|+||+.. .+.|+++|... +++.+.+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 67889999999998655443 68999999971 24678888743 5556667
Q ss_pred eeEEEEcccccCC--C---HHHHHHHHHHccCCCCEEE
Q 027441 190 VDVAVFCLSLMGI--N---FPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 190 fD~Vi~~~~l~~~--d---~~~~l~e~~rvLkpgG~lv 222 (223)
||+|-|.+++|+. . ...+|..+.++|+|||+||
T Consensus 197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI 234 (389)
T KOG1975|consen 197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFI 234 (389)
T ss_pred cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEE
Confidence 9999999999965 3 3489999999999999997
No 115
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.97 E-value=8.9e-10 Score=96.42 Aligned_cols=83 Identities=23% Similarity=0.291 Sum_probs=58.7
Q ss_pred CCCeEEEECCcchHHHHHhc----CceEEEecCC-------------------------CCCcEEEccCCC------CCC
Q 027441 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS-------------------------NDPSVIACDMSN------TPL 185 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~-------------------------~~~~~~~~d~~~------lp~ 185 (223)
++..|||||||-|.-..-+. ..++|+||+. -...++.+|... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 67899999999888555443 6899999996 012356677643 222
Q ss_pred CCCceeEEEEcccccCC--CH---HHHHHHHHHccCCCCEEEc
Q 027441 186 NSSSVDVAVFCLSLMGI--NF---PNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 186 ~~~sfD~Vi~~~~l~~~--d~---~~~l~e~~rvLkpgG~lvi 223 (223)
....||+|-|.+++||. .. ..+|..+...|+|||+|+.
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIg 184 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIG 184 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 23699999999999987 32 3799999999999999974
No 116
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.97 E-value=2.2e-09 Score=89.79 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=68.3
Q ss_pred CCCeEEEECCcchHHHHHhc---CceEEEecCCC------CCcEEEccCCCCCCCCCceeEEEEcccccCC-CHHHHHHH
Q 027441 141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVSN------DPSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NFPNYLQE 210 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~------~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-d~~~~l~e 210 (223)
...++||||+|.|..+..++ .+|++.++|+. .-.|.+.+..++.-.+..||+|.|.++|... +|..+|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~~LL~~ 173 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPLTLLRD 173 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhccCCHHHHHHH
Confidence 45789999999999999988 68999999982 2234444555555456789999999999966 88899999
Q ss_pred HHHccCCCCEEEc
Q 027441 211 AQRVLKPRGEEQI 223 (223)
Q Consensus 211 ~~rvLkpgG~lvi 223 (223)
+++.|+|+|.|++
T Consensus 174 i~~~l~p~G~lil 186 (265)
T PF05219_consen 174 IRRALKPNGRLIL 186 (265)
T ss_pred HHHHhCCCCEEEE
Confidence 9999999999985
No 117
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=2.9e-09 Score=91.00 Aligned_cols=92 Identities=22% Similarity=0.306 Sum_probs=69.2
Q ss_pred HHHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCC
Q 027441 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSS 188 (223)
Q Consensus 129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~ 188 (223)
.+.+++.+... ...+|||+|||.|.++..++ .+++-+|++. .+..+...|+.. +..+
T Consensus 147 S~lLl~~l~~~-~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v~~- 223 (300)
T COG2813 147 SRLLLETLPPD-LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-PVEG- 223 (300)
T ss_pred HHHHHHhCCcc-CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-cccc-
Confidence 35677777766 44599999999999999998 4788999985 222344444433 3333
Q ss_pred ceeEEEEcccccCC---C---HHHHHHHHHHccCCCCEEEc
Q 027441 189 SVDVAVFCLSLMGI---N---FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 189 sfD~Vi~~~~l~~~---d---~~~~l~e~~rvLkpgG~lvi 223 (223)
+||+|+|+--||-- . -..++.+..+.|++||.|+|
T Consensus 224 kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i 264 (300)
T COG2813 224 KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI 264 (300)
T ss_pred cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence 89999999999832 2 23899999999999999986
No 118
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=1.3e-09 Score=93.49 Aligned_cols=80 Identities=24% Similarity=0.352 Sum_probs=57.1
Q ss_pred CCCeEEEECCcchHHHHHhc----CceEEEecCC------------CCCc----EEEccCCCCCCCCCceeEEEEccccc
Q 027441 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS------------NDPS----VIACDMSNTPLNSSSVDVAVFCLSLM 200 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~------------~~~~----~~~~d~~~lp~~~~sfD~Vi~~~~l~ 200 (223)
++.+|||+|||+|.++...+ ..|+|+|+.+ ..+. ....+....+ ....||+|+++-..+
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~~~~DvIVANILA~ 240 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-ENGPFDVIVANILAE 240 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-ccCcccEEEehhhHH
Confidence 67999999999999998876 5799999998 2222 1111111111 236899999886322
Q ss_pred CCCHHHHHHHHHHccCCCCEEEc
Q 027441 201 GINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 201 ~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
....+...+.+.|+|||+|++
T Consensus 241 --vl~~La~~~~~~lkpgg~lIl 261 (300)
T COG2264 241 --VLVELAPDIKRLLKPGGRLIL 261 (300)
T ss_pred --HHHHHHHHHHHHcCCCceEEE
Confidence 123788899999999999985
No 119
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.95 E-value=1.9e-09 Score=85.58 Aligned_cols=90 Identities=16% Similarity=0.075 Sum_probs=64.8
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------CCCcEEEccCCCCCCCCCceeEEE
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDVAV 194 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------~~~~~~~~d~~~lp~~~~sfD~Vi 194 (223)
.+++.+... ++.+|||||||+|.++..++ .+|+++|+++ .++.++.+|+..+++++..||+|+
T Consensus 4 ~i~~~~~~~-~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi 82 (169)
T smart00650 4 KIVRAANLR-PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVV 82 (169)
T ss_pred HHHHhcCCC-CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEE
Confidence 455555433 56799999999999999887 5799999996 257788999999988877899999
Q ss_pred EcccccCCCHHHHHHHHHHc--cCCCCEEEc
Q 027441 195 FCLSLMGINFPNYLQEAQRV--LKPRGEEQI 223 (223)
Q Consensus 195 ~~~~l~~~d~~~~l~e~~rv--LkpgG~lvi 223 (223)
+..-++.. ...+..+... +.++|.|++
T Consensus 83 ~n~Py~~~--~~~i~~~l~~~~~~~~~~l~~ 111 (169)
T smart00650 83 GNLPYNIS--TPILFKLLEEPPAFRDAVLMV 111 (169)
T ss_pred ECCCcccH--HHHHHHHHhcCCCcceEEEEE
Confidence 87665432 2333333322 447777764
No 120
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.94 E-value=4.6e-09 Score=91.21 Aligned_cols=80 Identities=20% Similarity=0.179 Sum_probs=60.6
Q ss_pred CeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEccc---
Q 027441 143 LVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLS--- 198 (223)
Q Consensus 143 ~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~--- 198 (223)
.+|||+|||+|.++..++ .+|+++|+|+ .++.++.+|+.. ++++.+||+|++.--
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCC
Confidence 689999999999988886 3799999996 246788888754 234568999998621
Q ss_pred ----------ccCC-------------CHHHHHHHHHHccCCCCEEEc
Q 027441 199 ----------LMGI-------------NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 199 ----------l~~~-------------d~~~~l~e~~rvLkpgG~lvi 223 (223)
++|- ....++.++.++|+|||.|++
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 0111 024788999999999999985
No 121
>PRK04457 spermidine synthase; Provisional
Probab=98.94 E-value=2.8e-09 Score=90.55 Aligned_cols=89 Identities=18% Similarity=0.232 Sum_probs=64.8
Q ss_pred HHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCC-CCCCCcee
Q 027441 134 KWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNT-PLNSSSVD 191 (223)
Q Consensus 134 ~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~l-p~~~~sfD 191 (223)
..+...++..+|||||||+|.++..++ .+|+++|+++ .++.++.+|+... +-...+||
T Consensus 59 ~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD 138 (262)
T PRK04457 59 GFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTD 138 (262)
T ss_pred HHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCC
Confidence 333333356789999999999998775 4799999986 3456778887442 22236899
Q ss_pred EEEEcccccC------CCHHHHHHHHHHccCCCCEEEc
Q 027441 192 VAVFCLSLMG------INFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 192 ~Vi~~~~l~~------~d~~~~l~e~~rvLkpgG~lvi 223 (223)
+|++.. ++. +....++.++.++|+|||+|+|
T Consensus 139 ~I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi 175 (262)
T PRK04457 139 VILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVV 175 (262)
T ss_pred EEEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEE
Confidence 999753 221 1236999999999999999975
No 122
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.94 E-value=7.8e-09 Score=87.82 Aligned_cols=82 Identities=21% Similarity=0.316 Sum_probs=61.7
Q ss_pred CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEccccc
Q 027441 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM 200 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~ 200 (223)
++.+|||+|||+|.++..++ ..|+|+|+++ .++.++.+|+... +.+++||+|++.-...
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-LPGGRFDLIVSNPPYI 186 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-CCCCceeEEEECCCcC
Confidence 56799999999999888886 4799999996 2467778887442 3357899999853211
Q ss_pred --------------C------------C-CHHHHHHHHHHccCCCCEEEc
Q 027441 201 --------------G------------I-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 201 --------------~------------~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
| + ....++.++.++|+|||.+++
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 0 0 134788889999999999985
No 123
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.93 E-value=4.9e-09 Score=95.22 Aligned_cols=115 Identities=26% Similarity=0.357 Sum_probs=79.4
Q ss_pred chHHHHHhhcChHHHHHHHHhHHhhhccCCCchHHHHHHHHhccC---CCCeEEEECCcchHHHHHhc---------Cce
Q 027441 96 GKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHS---PSLVIADFGCGDARLAKSVK---------NKV 163 (223)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~l~~~~---~~~~ILDiGcG~G~~a~~la---------~~v 163 (223)
+...++.|..++-.|+.|...... .+.+...... .+..|||||||+|.++...+ .+|
T Consensus 149 ~s~tYe~fE~D~vKY~~Ye~AI~~-----------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~V 217 (448)
T PF05185_consen 149 ESQTYEVFEKDPVKYDQYERAIEE-----------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKV 217 (448)
T ss_dssp -HHHHHHHCC-HHHHHHHHHHHHH-----------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEE
T ss_pred ccccHhhHhcCHHHHHHHHHHHHH-----------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEE
Confidence 445678888999989888755432 2333333221 25789999999999875442 489
Q ss_pred EEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcccccCC---CHHHHHHHHHHccCCCCEEE
Q 027441 164 FSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 164 ~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~---d~~~~l~e~~rvLkpgG~lv 222 (223)
++++-++ ..+.++.+|++++.++. .+|+||+-..-... -.+.+|..+.|.|+|||+++
T Consensus 218 yAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 218 YAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 9999987 56889999999988754 89999988765533 45688999999999999886
No 124
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.93 E-value=3.8e-09 Score=90.95 Aligned_cols=89 Identities=21% Similarity=0.307 Sum_probs=58.4
Q ss_pred HHHHHHhcc-CCCCeEEEECCcchHHHHHhc----CceEEEecCC------------C--CCcEEEccCCCCCCCCCcee
Q 027441 131 IIVKWLKDH-SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS------------N--DPSVIACDMSNTPLNSSSVD 191 (223)
Q Consensus 131 ~i~~~l~~~-~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~------------~--~~~~~~~d~~~lp~~~~sfD 191 (223)
..+..|... .++.+|||+|||+|.++...+ .+|+|+|+++ . ...+.+.... ......||
T Consensus 150 lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~--~~~~~~~d 227 (295)
T PF06325_consen 150 LCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSE--DLVEGKFD 227 (295)
T ss_dssp HHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTS--CTCCS-EE
T ss_pred HHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEec--ccccccCC
Confidence 344444332 356899999999999988776 5899999998 1 1123222222 23358999
Q ss_pred EEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 192 VAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 192 ~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
+|+++-...- ...++..+.++|+|||+|++
T Consensus 228 lvvANI~~~v--L~~l~~~~~~~l~~~G~lIl 257 (295)
T PF06325_consen 228 LVVANILADV--LLELAPDIASLLKPGGYLIL 257 (295)
T ss_dssp EEEEES-HHH--HHHHHHHCHHHEEEEEEEEE
T ss_pred EEEECCCHHH--HHHHHHHHHHhhCCCCEEEE
Confidence 9998766321 13667778899999999985
No 125
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.90 E-value=6.2e-09 Score=89.32 Aligned_cols=94 Identities=15% Similarity=0.133 Sum_probs=67.0
Q ss_pred HHHHHHHhccCCCCeEEEECCcchH--H--HHHhc---------CceEEEecCC--------------------------
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDAR--L--AKSVK---------NKVFSFDLVS-------------------------- 170 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~--~--a~~la---------~~v~gvDis~-------------------------- 170 (223)
+.+.+.+.......+||..||+||. + +..+. -+|+|+||++
T Consensus 104 ~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~r 183 (287)
T PRK10611 104 PILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQR 183 (287)
T ss_pred HHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHH
Confidence 3344433332234799999999997 2 22221 1589999995
Q ss_pred --------------------CCCcEEEccCCCCCCC-CCceeEEEEcccccCCCH---HHHHHHHHHccCCCCEEEc
Q 027441 171 --------------------NDPSVIACDMSNTPLN-SSSVDVAVFCLSLMGINF---PNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 171 --------------------~~~~~~~~d~~~lp~~-~~sfD~Vi~~~~l~~~d~---~~~l~e~~rvLkpgG~lvi 223 (223)
..+.|...|+...+++ .+.||+|+|.+++.|++. ..++..+++.|+|||+|++
T Consensus 184 yF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 184 YFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred HcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 1234556677664443 578999999999999944 4999999999999999985
No 126
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.90 E-value=7.7e-09 Score=93.89 Aligned_cols=83 Identities=18% Similarity=0.204 Sum_probs=64.5
Q ss_pred CCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCC----CCCCceeEEE
Q 027441 140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP----LNSSSVDVAV 194 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp----~~~~sfD~Vi 194 (223)
.++.+|||+|||+|..+..++ ++|+++|+++ .++.++.+|+..++ +..++||.|+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 367899999999999887765 4799999997 35678888988765 4467899999
Q ss_pred Ec------ccccCC-C----------------HHHHHHHHHHccCCCCEEE
Q 027441 195 FC------LSLMGI-N----------------FPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 195 ~~------~~l~~~-d----------------~~~~l~e~~rvLkpgG~lv 222 (223)
+. +++.+. + ...+|.++.++|||||.|+
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lv 381 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLV 381 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 63 233322 2 2478999999999999986
No 127
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.88 E-value=3.7e-09 Score=96.20 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=65.9
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCCCCCCc
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSS 189 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~s 189 (223)
.+...+....++.+|||+|||+|..+..++ .+|+|+|+++ .++.++.+|+..++ ++.+
T Consensus 240 ~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~ 318 (445)
T PRK14904 240 ALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQ 318 (445)
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCC
Confidence 333333333467899999999998776554 4799999997 24677888887765 4578
Q ss_pred eeEEEEc----cccc--------C-CC----------HHHHHHHHHHccCCCCEEEc
Q 027441 190 VDVAVFC----LSLM--------G-IN----------FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 190 fD~Vi~~----~~l~--------~-~d----------~~~~l~e~~rvLkpgG~lvi 223 (223)
||+|++. ..-+ | .+ ...+|.++.++|+|||+|++
T Consensus 319 fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvy 375 (445)
T PRK14904 319 PDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVY 375 (445)
T ss_pred CCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 9999952 2111 1 11 12689999999999999974
No 128
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.88 E-value=4.5e-09 Score=91.05 Aligned_cols=82 Identities=22% Similarity=0.236 Sum_probs=68.4
Q ss_pred CCCeEEEECCcchHHHHHhc----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEcccccC
Q 027441 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG 201 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~ 201 (223)
.+..|||||||+|.++...+ .+|+|+|.|. .-++++.+.++++.+|...+|+|++-++-++
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~ 139 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYF 139 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHH
Confidence 78999999999999988776 5899999996 2367788888887776788999999998887
Q ss_pred CC----HHHHHHHHHHccCCCCEEE
Q 027441 202 IN----FPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 202 ~d----~~~~l~e~~rvLkpgG~lv 222 (223)
+- ...+|..-.+.|+|||.++
T Consensus 140 Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 140 LLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHhhhhhhhhhhhhhccCCCceEc
Confidence 73 3467777779999999875
No 129
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.87 E-value=1.8e-08 Score=85.14 Aligned_cols=82 Identities=18% Similarity=0.296 Sum_probs=59.7
Q ss_pred CCeEEEECCcchHHHHHhc-----CceEEEecCC------------CCCcEEEccCCCC-CC-CCCceeEEEEccccc--
Q 027441 142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------NDPSVIACDMSNT-PL-NSSSVDVAVFCLSLM-- 200 (223)
Q Consensus 142 ~~~ILDiGcG~G~~a~~la-----~~v~gvDis~------------~~~~~~~~d~~~l-p~-~~~sfD~Vi~~~~l~-- 200 (223)
..+|||+|||+|.++..++ .+|+|+|+++ ....++.+|+... +- ..+.||+|++.--..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 4589999999999988876 3799999997 2356788887653 21 135799999874221
Q ss_pred ------------CC---------C----HHHHHHHHHHccCCCCEEEc
Q 027441 201 ------------GI---------N----FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 201 ------------~~---------d----~~~~l~e~~rvLkpgG~lvi 223 (223)
|- | ...++..+.++|+|||.|++
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l 214 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLV 214 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 10 0 23778888899999999985
No 130
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.87 E-value=1.5e-08 Score=90.77 Aligned_cols=99 Identities=16% Similarity=0.135 Sum_probs=68.3
Q ss_pred CCchHHHHHHHHhc-cCCCCeEEEECCcchHHHHHhc-----CceEEEecCC--------------CCCcEEEccCCCCC
Q 027441 125 PELPVNIIVKWLKD-HSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTP 184 (223)
Q Consensus 125 p~~~~~~i~~~l~~-~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------------~~~~~~~~d~~~lp 184 (223)
|....+.+.+.+.. ..++.+|||+|||+|.++..++ .+|+|+|+|+ .++.++.+|+....
T Consensus 234 PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~ 313 (423)
T PRK14966 234 PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTD 313 (423)
T ss_pred CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccc
Confidence 44334455555432 2345799999999999988775 4799999997 24678888886543
Q ss_pred C-CCCceeEEEEcccccC-----C-----------------C----HHHHHHHHHHccCCCCEEEc
Q 027441 185 L-NSSSVDVAVFCLSLMG-----I-----------------N----FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 185 ~-~~~sfD~Vi~~~~l~~-----~-----------------d----~~~~l~e~~rvLkpgG~lvi 223 (223)
+ ..++||+|+|.--... . | ...++..+.+.|+|||.+++
T Consensus 314 l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 314 MPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred cccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 3 2457999999543210 0 0 23677788899999999874
No 131
>PHA03411 putative methyltransferase; Provisional
Probab=98.87 E-value=1.1e-08 Score=86.73 Aligned_cols=82 Identities=17% Similarity=0.216 Sum_probs=64.8
Q ss_pred CCCeEEEECCcchHHHHHhc-----CceEEEecCC----------CCCcEEEccCCCCCCCCCceeEEEEcccccCCC--
Q 027441 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGIN-- 203 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d-- 203 (223)
...+|||+|||+|.++..++ .+|+++|+++ .++.++.+|+..+.. +..||+|++.-.++|.+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKINTT 142 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccCch
Confidence 45799999999999877664 4799999997 357788999987653 46899999988877641
Q ss_pred -------------------HHHHHHHHHHccCCCCEEEc
Q 027441 204 -------------------FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 204 -------------------~~~~l~e~~rvLkpgG~lvi 223 (223)
...++.....+|+|+|.+++
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~ 181 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGF 181 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEE
Confidence 23567778899999997753
No 132
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.87 E-value=7.5e-09 Score=88.02 Aligned_cols=91 Identities=12% Similarity=0.093 Sum_probs=65.3
Q ss_pred HHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCCCCCCce
Q 027441 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSV 190 (223)
Q Consensus 132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sf 190 (223)
+...+....++.+|||+|||+|..+..++ +.|+++|+++ .++.++..|+..++.....|
T Consensus 62 ~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~f 141 (264)
T TIGR00446 62 IPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKF 141 (264)
T ss_pred HHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCC
Confidence 33333333477899999999999887765 4799999997 34667778877766555679
Q ss_pred eEEEEcc------cccC--------C---------CHHHHHHHHHHccCCCCEEE
Q 027441 191 DVAVFCL------SLMG--------I---------NFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 191 D~Vi~~~------~l~~--------~---------d~~~~l~e~~rvLkpgG~lv 222 (223)
|+|++.- ++.+ . ....+|..+.++|+|||+|+
T Consensus 142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lv 196 (264)
T TIGR00446 142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLV 196 (264)
T ss_pred CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 9999532 1111 0 01259999999999999986
No 133
>PRK00811 spermidine synthase; Provisional
Probab=98.86 E-value=6.6e-09 Score=89.24 Aligned_cols=83 Identities=16% Similarity=0.091 Sum_probs=62.7
Q ss_pred CCCeEEEECCcchHHHHHhc-----CceEEEecCC--------------------CCCcEEEccCCCC-CCCCCceeEEE
Q 027441 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------------NDPSVIACDMSNT-PLNSSSVDVAV 194 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------------------~~~~~~~~d~~~l-p~~~~sfD~Vi 194 (223)
...+||+||||+|..+..+. .+|+++|+++ +++.++.+|+..+ ....++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 56799999999999988775 3799999997 2345677777542 23467899999
Q ss_pred EcccccCC-----CHHHHHHHHHHccCCCCEEEc
Q 027441 195 FCLSLMGI-----NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 195 ~~~~l~~~-----d~~~~l~e~~rvLkpgG~lvi 223 (223)
+...-.+. --..++..+.++|+|||+|++
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~ 189 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA 189 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 87543322 125788999999999999874
No 134
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.86 E-value=9.9e-09 Score=93.04 Aligned_cols=86 Identities=14% Similarity=0.157 Sum_probs=63.7
Q ss_pred ccCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCC-CCCCceeEEEE
Q 027441 138 DHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP-LNSSSVDVAVF 195 (223)
Q Consensus 138 ~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp-~~~~sfD~Vi~ 195 (223)
...++.+|||+|||+|..+..++ .+|+++|+++ .++.++.+|+..++ +.+++||.|++
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence 33477899999999998776655 4799999997 24567888887766 44678999996
Q ss_pred cc---cccCC--CH------------------HHHHHHHHHccCCCCEEEc
Q 027441 196 CL---SLMGI--NF------------------PNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 196 ~~---~l~~~--d~------------------~~~l~e~~rvLkpgG~lvi 223 (223)
.. .+..+ ++ ..+|..+.++|+|||.|+.
T Consensus 314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvY 364 (431)
T PRK14903 314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLY 364 (431)
T ss_pred CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 21 11111 11 3679999999999999873
No 135
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.86 E-value=9.3e-09 Score=93.15 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=62.8
Q ss_pred CCCCeEEEECCcchHHHHHhc-----CceEEEecCC--------------CCCcEEEccCCCCC--CCCCceeEEEE---
Q 027441 140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTP--LNSSSVDVAVF--- 195 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------------~~~~~~~~d~~~lp--~~~~sfD~Vi~--- 195 (223)
.++.+|||+|||+|..+..++ .+|+++|+++ ..+.++.+|+..++ +...+||.|++
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 478899999999999887776 3799999997 13567888987654 34678999994
Q ss_pred -ccc--cc------CC-C----------HHHHHHHHHHccCCCCEEEc
Q 027441 196 -CLS--LM------GI-N----------FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 196 -~~~--l~------~~-d----------~~~~l~e~~rvLkpgG~lvi 223 (223)
+.. +. |. . ...+|..+.++|+|||.|++
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvy 370 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLY 370 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 221 11 11 1 12689999999999999974
No 136
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.84 E-value=9.4e-09 Score=83.56 Aligned_cols=93 Identities=19% Similarity=0.245 Sum_probs=62.8
Q ss_pred HHHHHHHHhccCCCCeEEEECCcchHHHHHhcCceE-----EEecCC---------------CCC-cEEEccCCCC--CC
Q 027441 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVKNKVF-----SFDLVS---------------NDP-SVIACDMSNT--PL 185 (223)
Q Consensus 129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la~~v~-----gvDis~---------------~~~-~~~~~d~~~l--p~ 185 (223)
++.+.+++... +.+|||||||||..+.+++.++. -.|+.+ .++ .-+..|+... |.
T Consensus 15 l~vL~~~l~~~--~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~ 92 (204)
T PF06080_consen 15 LEVLKQYLPDS--GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPW 92 (204)
T ss_pred HHHHHHHhCcc--CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcc
Confidence 34455555432 22599999999999999984221 223322 111 1234555443 22
Q ss_pred ------CCCceeEEEEcccccCCCHH---HHHHHHHHccCCCCEEEc
Q 027441 186 ------NSSSVDVAVFCLSLMGINFP---NYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 186 ------~~~sfD~Vi~~~~l~~~d~~---~~l~e~~rvLkpgG~lvi 223 (223)
...+||+|+|..++|-+.+. .+|..+.++|+|||.|++
T Consensus 93 ~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~ 139 (204)
T PF06080_consen 93 ELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFL 139 (204)
T ss_pred ccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 34689999999999977554 999999999999999985
No 137
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.83 E-value=1.6e-08 Score=91.51 Aligned_cols=84 Identities=12% Similarity=0.062 Sum_probs=60.6
Q ss_pred CCCCeEEEECCcchHHHHHhc-----CceEEEecCCC------------C--CcE--EEccCCCCCC--CCCceeEEEEc
Q 027441 140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN------------D--PSV--IACDMSNTPL--NSSSVDVAVFC 196 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~~------------~--~~~--~~~d~~~lp~--~~~sfD~Vi~~ 196 (223)
.++.+|||+|||+|..+..++ .+|+|+|+++. . +.+ ..+|....++ .+.+||.|++.
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 377899999999999877765 48999999971 1 222 4455554443 56789999952
Q ss_pred ------ccccCC-C----------------HHHHHHHHHHccCCCCEEEc
Q 027441 197 ------LSLMGI-N----------------FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 197 ------~~l~~~-d----------------~~~~l~e~~rvLkpgG~lvi 223 (223)
+++++. + ...+|.++.++|+|||.|++
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvy 366 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVY 366 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 233332 2 24799999999999999974
No 138
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.80 E-value=8.7e-09 Score=85.12 Aligned_cols=83 Identities=14% Similarity=0.227 Sum_probs=59.3
Q ss_pred CCCeEEEECCcchHHHHHhc-----CceEEEecCCC-------C------------------------------------
Q 027441 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN-------D------------------------------------ 172 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~~-------~------------------------------------ 172 (223)
.+..+|||||..|.++..++ ..|.|+||.+. +
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 45789999999999999887 47999999970 0
Q ss_pred -------CcEEEcc----CC-CCCCCCCceeEEEEcccccCC--CH-----HHHHHHHHHccCCCCEEEc
Q 027441 173 -------PSVIACD----MS-NTPLNSSSVDVAVFCLSLMGI--NF-----PNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 173 -------~~~~~~d----~~-~lp~~~~sfD~Vi~~~~l~~~--d~-----~~~l~e~~rvLkpgG~lvi 223 (223)
+.|...+ .. -+.+....||+|+|--+-.|+ +| ..+|..++++|.|||+|++
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 0000000 00 012234679999988777755 43 4999999999999999986
No 139
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.80 E-value=1.6e-08 Score=84.49 Aligned_cols=90 Identities=11% Similarity=0.105 Sum_probs=65.6
Q ss_pred HHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCC-C----
Q 027441 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNT-P---- 184 (223)
Q Consensus 132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~l-p---- 184 (223)
++..+....+..+|||||||+|+.+..++ .+|+++|+++ .++.++.+|+... +
T Consensus 59 ~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~ 138 (234)
T PLN02781 59 FLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLN 138 (234)
T ss_pred HHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHh
Confidence 44444444467899999999999666554 5899999997 3467788887542 1
Q ss_pred -CCCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 185 -LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 185 -~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
.+..+||+|++...- -....++..+.++|+|||++++
T Consensus 139 ~~~~~~fD~VfiDa~k--~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 139 NDPKPEFDFAFVDADK--PNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CCCCCCCCEEEECCCH--HHHHHHHHHHHHhcCCCeEEEE
Confidence 124689999875431 1456889999999999999874
No 140
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.77 E-value=1.1e-07 Score=80.72 Aligned_cols=82 Identities=13% Similarity=0.113 Sum_probs=64.1
Q ss_pred CCeEEEECCcchH--HHHHh--c----------CceEEEecCC-------------------------------------
Q 027441 142 SLVIADFGCGDAR--LAKSV--K----------NKVFSFDLVS------------------------------------- 170 (223)
Q Consensus 142 ~~~ILDiGcG~G~--~a~~l--a----------~~v~gvDis~------------------------------------- 170 (223)
..+||-.||+||. ++.++ . -+|+|+||+.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 6899999999997 33322 1 2688999995
Q ss_pred -------CCCcEEEccCCCCCCCCCceeEEEEcccccCCCHH---HHHHHHHHccCCCCEEEc
Q 027441 171 -------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFP---NYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 171 -------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~---~~l~e~~rvLkpgG~lvi 223 (223)
..|.|-..|+...++..+.||+|+|..|+.++|.+ .++..++..|+|||+|+|
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 23456666765554345779999999999999665 999999999999999986
No 141
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.77 E-value=9.6e-09 Score=84.05 Aligned_cols=83 Identities=17% Similarity=0.232 Sum_probs=59.4
Q ss_pred CCCeEEEECCcchHHHHHhc----CceEEEecCC-----------C---C-CcEEEccCCCCCCCCCceeEEEEcccccC
Q 027441 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS-----------N---D-PSVIACDMSNTPLNSSSVDVAVFCLSLMG 201 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~-----------~---~-~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~ 201 (223)
...++||.|||-|..+..+. .+|-.+|+++ . . ..+.+..++++..+...||+|++.+++.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 45799999999999998775 4666677665 1 1 24556667776655689999999999999
Q ss_pred C---CHHHHHHHHHHccCCCCEEEc
Q 027441 202 I---NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 202 ~---d~~~~l~e~~rvLkpgG~lvi 223 (223)
+ |...+|..+...|+|+|+++|
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEE
Confidence 9 667999999999999999986
No 142
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.76 E-value=3.2e-08 Score=90.06 Aligned_cols=82 Identities=13% Similarity=0.100 Sum_probs=61.7
Q ss_pred CCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCC--CCCCceeEEEEc
Q 027441 140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP--LNSSSVDVAVFC 196 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~ 196 (223)
.++.+|||+|||+|..+..++ .+|+++|+++ .++.++.+|+..++ ++ ++||+|++.
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D 327 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVD 327 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEc
Confidence 367899999999999887765 4799999996 24678888987653 33 789999964
Q ss_pred cc------ccCC-------C----------HHHHHHHHHHccCCCCEEE
Q 027441 197 LS------LMGI-------N----------FPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 197 ~~------l~~~-------d----------~~~~l~e~~rvLkpgG~lv 222 (223)
.- +.+. . ...+|.++.++|+|||.|+
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lv 376 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILV 376 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 32 1110 0 1258999999999999997
No 143
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.75 E-value=4.4e-08 Score=90.52 Aligned_cols=81 Identities=20% Similarity=0.237 Sum_probs=59.0
Q ss_pred CCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcccc-
Q 027441 142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL- 199 (223)
Q Consensus 142 ~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l- 199 (223)
..+|||+|||+|.++..++ .+|+++|+|+ .++.++.+|+.. +++...||+|++.--.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCC
Confidence 4689999999999988775 4799999996 245677777643 2345689999984211
Q ss_pred -------------cCC-------------CHHHHHHHHHHccCCCCEEEc
Q 027441 200 -------------MGI-------------NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 200 -------------~~~-------------d~~~~l~e~~rvLkpgG~lvi 223 (223)
.|- .+..++..+.++|+|||.|++
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 110 023577888999999999985
No 144
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=1.1e-07 Score=77.43 Aligned_cols=94 Identities=20% Similarity=0.251 Sum_probs=70.3
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----CCCcEEEccCCCCC--------CCCCcee
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----NDPSVIACDMSNTP--------LNSSSVD 191 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----~~~~~~~~d~~~lp--------~~~~sfD 191 (223)
..|.+...-..++.+|+||||.+|.|++.++ ..|+|+|+.+ +++.++.+|+..-+ +....+|
T Consensus 34 ~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 34 LELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred HHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 3444444444578999999999999999887 3499999998 67889999997644 3355689
Q ss_pred EEEEcccc--------cCC----CHHHHHHHHHHccCCCCEEEc
Q 027441 192 VAVFCLSL--------MGI----NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 192 ~Vi~~~~l--------~~~----d~~~~l~e~~rvLkpgG~lvi 223 (223)
+|++-++- +|. -...++.-+..+|+|||.+++
T Consensus 114 vV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~ 157 (205)
T COG0293 114 VVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVA 157 (205)
T ss_pred eEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEE
Confidence 99987765 222 123677777889999999874
No 145
>PHA03412 putative methyltransferase; Provisional
Probab=98.69 E-value=1.1e-07 Score=79.04 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=60.4
Q ss_pred CCCeEEEECCcchHHHHHhc--------CceEEEecCC----------CCCcEEEccCCCCCCCCCceeEEEEccccc--
Q 027441 141 PSLVIADFGCGDARLAKSVK--------NKVFSFDLVS----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM-- 200 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la--------~~v~gvDis~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~-- 200 (223)
.+.+|||+|||+|.++..++ ..|+++|+++ .++.++.+|+...++ +.+||+||+.--+.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKI 127 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCc
Confidence 46899999999999988664 2699999997 456788999977665 56899999875443
Q ss_pred --------CC--C-HHHHHHHHHHccCCCCE
Q 027441 201 --------GI--N-FPNYLQEAQRVLKPRGE 220 (223)
Q Consensus 201 --------~~--d-~~~~l~e~~rvLkpgG~ 220 (223)
|. . ...++..+.++++||+.
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 11 1 34688888997777765
No 146
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.69 E-value=2.9e-08 Score=80.81 Aligned_cols=81 Identities=21% Similarity=0.313 Sum_probs=60.8
Q ss_pred CeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCC-CC--CCCCceeEEEEcccc
Q 027441 143 LVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSN-TP--LNSSSVDVAVFCLSL 199 (223)
Q Consensus 143 ~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~-lp--~~~~sfD~Vi~~~~l 199 (223)
..+||||||.|.++..+| ..++|+|+.. .|+.++.+|+.. ++ ++++++|.|+..+-=
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 489999999999999888 4799999996 688999999877 22 457899999876643
Q ss_pred cCC---------CHHHHHHHHHHccCCCCEEEc
Q 027441 200 MGI---------NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 200 ~~~---------d~~~~l~e~~rvLkpgG~lvi 223 (223)
-|. --+.++..+.++|+|||.|.+
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~ 131 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYF 131 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence 222 124899999999999999875
No 147
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.67 E-value=1.1e-07 Score=77.60 Aligned_cols=94 Identities=9% Similarity=0.061 Sum_probs=63.8
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHH-hc---CceEEEecCC---------------CCCcEEEccCCC-CCCCCCc
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKS-VK---NKVFSFDLVS---------------NDPSVIACDMSN-TPLNSSS 189 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~-la---~~v~gvDis~---------------~~~~~~~~d~~~-lp~~~~s 189 (223)
+.+++.+....++.+|||+|||+|.++.. ++ .+|+++|+++ .++.++.+|+.. ++.....
T Consensus 42 e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~ 121 (199)
T PRK10909 42 ETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTP 121 (199)
T ss_pred HHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCC
Confidence 34555554323567999999999999875 43 5899999997 346677888754 2222457
Q ss_pred eeEEEEcccccCCCHHHHHHHHHH--ccCCCCEEEc
Q 027441 190 VDVAVFCLSLMGINFPNYLQEAQR--VLKPRGEEQI 223 (223)
Q Consensus 190 fD~Vi~~~~l~~~d~~~~l~e~~r--vLkpgG~lvi 223 (223)
||+|++.--+..--.+.++..+.. +|.|+|+++|
T Consensus 122 fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~v 157 (199)
T PRK10909 122 HNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYV 157 (199)
T ss_pred ceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEE
Confidence 999998776433233455555554 3789998875
No 148
>PRK01581 speE spermidine synthase; Validated
Probab=98.66 E-value=5.9e-08 Score=85.44 Aligned_cols=83 Identities=20% Similarity=0.142 Sum_probs=59.7
Q ss_pred CCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------------CCCcEEEccCCC-CCCCCCceeE
Q 027441 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------------NDPSVIACDMSN-TPLNSSSVDV 192 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------------~~~~~~~~d~~~-lp~~~~sfD~ 192 (223)
...+||+||||+|..+..+. .+|+++|+++ +++.++.+|+.. ++-..+.||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 55799999999999777665 4799999997 133445566544 2333568999
Q ss_pred EEEccccc---CC---CHHHHHHHHHHccCCCCEEEc
Q 027441 193 AVFCLSLM---GI---NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 193 Vi~~~~l~---~~---d~~~~l~e~~rvLkpgG~lvi 223 (223)
|++...-. .. --..++..+.+.|+|||+|++
T Consensus 230 IIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~ 266 (374)
T PRK01581 230 IIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVC 266 (374)
T ss_pred EEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 99885311 11 124799999999999999874
No 149
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=1.4e-07 Score=78.73 Aligned_cols=87 Identities=21% Similarity=0.271 Sum_probs=71.8
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCCCCCCC
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLNSS 188 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~ 188 (223)
.|+..+... ++.+|||.|.|+|.++.+|+ ++|+.+|+-+ .++.+..+|+.+.-+++
T Consensus 85 ~I~~~~gi~-pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~- 162 (256)
T COG2519 85 YIVARLGIS-PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE- 162 (256)
T ss_pred HHHHHcCCC-CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-
Confidence 455655554 89999999999999999998 6899999986 33777788888776655
Q ss_pred ceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 189 sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
.||+|+.-.- +|+.++..+..+|+|||.+++
T Consensus 163 ~vDav~LDmp----~PW~~le~~~~~Lkpgg~~~~ 193 (256)
T COG2519 163 DVDAVFLDLP----DPWNVLEHVSDALKPGGVVVV 193 (256)
T ss_pred ccCEEEEcCC----ChHHHHHHHHHHhCCCcEEEE
Confidence 8999985544 889999999999999999875
No 150
>PLN02366 spermidine synthase
Probab=98.64 E-value=1e-07 Score=82.79 Aligned_cols=84 Identities=12% Similarity=0.081 Sum_probs=62.1
Q ss_pred CCCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------------CCCcEEEccCCCC--CCCCCceeEE
Q 027441 140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSNT--PLNSSSVDVA 193 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------------~~~~~~~~d~~~l--p~~~~sfD~V 193 (223)
+...+||+||||.|.++..++ .+|+.+|+++ +++.++.+|+... ..+.+.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 356899999999999988886 3688888886 2466777886432 1235689999
Q ss_pred EEcccccCCC-----HHHHHHHHHHccCCCCEEEc
Q 027441 194 VFCLSLMGIN-----FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 194 i~~~~l~~~d-----~~~~l~e~~rvLkpgG~lvi 223 (223)
++...-.+.. -..+++.+.++|+|||+|++
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 9865433221 24789999999999999963
No 151
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.61 E-value=1.5e-07 Score=80.32 Aligned_cols=83 Identities=13% Similarity=0.054 Sum_probs=58.6
Q ss_pred CCCeEEEECCcchHHHHHhc-----CceEEEecCCC-------------------CCcEEEccCCC-CCCCCCceeEEEE
Q 027441 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN-------------------DPSVIACDMSN-TPLNSSSVDVAVF 195 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~~-------------------~~~~~~~d~~~-lp~~~~sfD~Vi~ 195 (223)
...+||+||||+|.++..+. .+|+++|+++. ++.++.+|... +.-..++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 34699999999999887764 46899999861 23344455432 1112468999998
Q ss_pred cccccCC---C--HHHHHHHHHHccCCCCEEEc
Q 027441 196 CLSLMGI---N--FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 196 ~~~l~~~---d--~~~~l~e~~rvLkpgG~lvi 223 (223)
....... . ...++..+.+.|+|||.+++
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~ 184 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVA 184 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEE
Confidence 7653221 1 45889999999999999974
No 152
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.61 E-value=1.9e-07 Score=76.38 Aligned_cols=91 Identities=31% Similarity=0.444 Sum_probs=70.3
Q ss_pred HHHHHHHhccC-------CCCeEEEECCcchHHHHHh--cCceEEEecCCCCCcEEEccCCCCCCC---CCceeEEEEcc
Q 027441 130 NIIVKWLKDHS-------PSLVIADFGCGDARLAKSV--KNKVFSFDLVSNDPSVIACDMSNTPLN---SSSVDVAVFCL 197 (223)
Q Consensus 130 ~~i~~~l~~~~-------~~~~ILDiGcG~G~~a~~l--a~~v~gvDis~~~~~~~~~d~~~lp~~---~~sfD~Vi~~~ 197 (223)
.+++++|.... ...++|||||=+......- .-.|+.+|+.+....+..+|+...|++ ++.||+|.++.
T Consensus 33 K~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SL 112 (219)
T PF11968_consen 33 KWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSL 112 (219)
T ss_pred HHHHHHhhhhccccccccccceEEeecccCCCCcccccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEE
Confidence 45566655431 2369999999644322211 124999999999999999999888874 67999999999
Q ss_pred cccCC-CHH---HHHHHHHHccCCCCE
Q 027441 198 SLMGI-NFP---NYLQEAQRVLKPRGE 220 (223)
Q Consensus 198 ~l~~~-d~~---~~l~e~~rvLkpgG~ 220 (223)
||.++ ++. ..+..+++.|+|+|.
T Consensus 113 VLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 113 VLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred EEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 99999 443 899999999999999
No 153
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.60 E-value=1.2e-07 Score=78.90 Aligned_cols=84 Identities=14% Similarity=0.226 Sum_probs=55.8
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC--------CCCc---EEEccCCCCC-----CCCCce
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------NDPS---VIACDMSNTP-----LNSSSV 190 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------~~~~---~~~~d~~~lp-----~~~~sf 190 (223)
.++..+....++.+|||+|||||.++..++ .+|+|+|+++ .+.. +...|+..+. ..-..|
T Consensus 65 ~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~ 144 (228)
T TIGR00478 65 EALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATF 144 (228)
T ss_pred HHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceee
Confidence 344444333367799999999999999886 5799999997 1222 2333444322 122467
Q ss_pred eEEEEcccccCCCHHHHHHHHHHccCCCCEEE
Q 027441 191 DVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 191 D~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lv 222 (223)
|+++++..+ .+..+.+.|+| |.++
T Consensus 145 DvsfiS~~~-------~l~~i~~~l~~-~~~~ 168 (228)
T TIGR00478 145 DVSFISLIS-------ILPELDLLLNP-NDLT 168 (228)
T ss_pred eEEEeehHh-------HHHHHHHHhCc-CeEE
Confidence 777766653 57788888998 7765
No 154
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.60 E-value=5.4e-08 Score=86.04 Aligned_cols=84 Identities=21% Similarity=0.312 Sum_probs=74.5
Q ss_pred CCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcccc
Q 027441 140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL 199 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l 199 (223)
.++..++|+|||-|....+++ ..++|+|.++ ....++.+|+-..|+++++||.+.+..+.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 356689999999999988887 5789999987 34456888999999999999999999999
Q ss_pred cCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 200 MGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 200 ~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
.|. +...++.|++|+|+|||++++
T Consensus 189 ~~~~~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 189 CHAPDLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred ccCCcHHHHHHHHhcccCCCceEEe
Confidence 999 899999999999999999874
No 155
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.59 E-value=1.8e-07 Score=85.19 Aligned_cols=89 Identities=16% Similarity=0.309 Sum_probs=63.3
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCC----CCCCCC
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSN----TPLNSS 188 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~----lp~~~~ 188 (223)
.+++++... ++.+|||+|||+|.++..++ .+|+|+|+|+ .++.++.+|+.. +++.+.
T Consensus 288 ~vl~~l~~~-~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~ 366 (443)
T PRK13168 288 RALEWLDPQ-PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALG 366 (443)
T ss_pred HHHHHhcCC-CCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcC
Confidence 344444333 66899999999999999887 5799999997 357788998854 335567
Q ss_pred ceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 189 sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
+||+|++.---.. ....+..+.+ |+|+++++|
T Consensus 367 ~fD~Vi~dPPr~g--~~~~~~~l~~-~~~~~ivyv 398 (443)
T PRK13168 367 GFDKVLLDPPRAG--AAEVMQALAK-LGPKRIVYV 398 (443)
T ss_pred CCCEEEECcCCcC--hHHHHHHHHh-cCCCeEEEE
Confidence 8999987543222 2355555555 688888775
No 156
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.57 E-value=6.3e-08 Score=92.81 Aligned_cols=83 Identities=11% Similarity=0.098 Sum_probs=63.0
Q ss_pred CCCeEEEECCcchHHHHHhc----CceEEEecCC-----------------CCCcEEEccCCCCC-CCCCceeEEEEccc
Q 027441 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS-----------------NDPSVIACDMSNTP-LNSSSVDVAVFCLS 198 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~-----------------~~~~~~~~d~~~lp-~~~~sfD~Vi~~~~ 198 (223)
++.+|||+|||+|.++..++ .+|+++|+|+ .++.++.+|+.++. -...+||+|++.--
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 57899999999999999887 3699999997 14678888875421 11468999998521
Q ss_pred -----------ccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 199 -----------LMGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 199 -----------l~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
+... +...++..+.++|+|||+|++
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~ 654 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYF 654 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 1112 456889999999999999874
No 157
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=3.4e-07 Score=78.51 Aligned_cols=78 Identities=26% Similarity=0.391 Sum_probs=54.7
Q ss_pred eEEEECCcchHHHHHhc-----CceEEEecCC------------CC---CcEEEccCCCCCCCCCceeEEEEcccc----
Q 027441 144 VIADFGCGDARLAKSVK-----NKVFSFDLVS------------ND---PSVIACDMSNTPLNSSSVDVAVFCLSL---- 199 (223)
Q Consensus 144 ~ILDiGcG~G~~a~~la-----~~v~gvDis~------------~~---~~~~~~d~~~lp~~~~sfD~Vi~~~~l---- 199 (223)
+|||||||+|.++..++ ..|+|+|+|+ .. +.++.+|.... + .+.||+|+|+--.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~-~-~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP-L-RGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-c-CCceeEEEeCCCCCCCc
Confidence 79999999999999988 3899999998 12 22333433221 1 2489999986321
Q ss_pred -cCC-------C--------------HHHHHHHHHHccCCCCEEEc
Q 027441 200 -MGI-------N--------------FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 200 -~~~-------d--------------~~~~l~e~~rvLkpgG~lvi 223 (223)
.+. + ...++.++.+.|+|||.+++
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l 236 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL 236 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE
Confidence 111 1 22888899999999999875
No 158
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.54 E-value=1.8e-07 Score=74.72 Aligned_cols=84 Identities=21% Similarity=0.243 Sum_probs=54.2
Q ss_pred CCCCeEEEECCcchHHHHHhc-----CceEEEecCC-----------------CCCcEEEccCCC-C---CCCCCceeEE
Q 027441 140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-----------------NDPSVIACDMSN-T---PLNSSSVDVA 193 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-----------------~~~~~~~~d~~~-l---p~~~~sfD~V 193 (223)
..+.+|||||||+|..+..++ .+|+..|..+ ..+.+...|-.+ . .+....||+|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 467899999999998777665 5799999886 112233333222 1 1234689999
Q ss_pred EEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 194 VFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 194 i~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
+++.+++.. ..+.++..+.++|+|+|.+++
T Consensus 124 lasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~ 154 (173)
T PF10294_consen 124 LASDVLYDEELFEPLVRTLKRLLKPNGKVLL 154 (173)
T ss_dssp EEES--S-GGGHHHHHHHHHHHBTT-TTEEE
T ss_pred EEecccchHHHHHHHHHHHHHHhCCCCEEEE
Confidence 999999976 778999999999999988653
No 159
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.2e-07 Score=75.36 Aligned_cols=88 Identities=20% Similarity=0.287 Sum_probs=65.5
Q ss_pred HHHHHHhc-cCCCCeEEEECCcchHHHHHhc-------CceEEEecCC-------------------------CCCcEEE
Q 027441 131 IIVKWLKD-HSPSLVIADFGCGDARLAKSVK-------NKVFSFDLVS-------------------------NDPSVIA 177 (223)
Q Consensus 131 ~i~~~l~~-~~~~~~ILDiGcG~G~~a~~la-------~~v~gvDis~-------------------------~~~~~~~ 177 (223)
.++++|.. ..|+.++||+|+|+|+++..++ ..++|+|.-+ .++.+++
T Consensus 71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 44555542 2388999999999999887766 1236776654 3556788
Q ss_pred ccCCCCCCCCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 178 CDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 178 ~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
+|.....-+...||.|++..+. +....++...|+|||.|+|
T Consensus 151 GDgr~g~~e~a~YDaIhvGAaa-----~~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 151 GDGRKGYAEQAPYDAIHVGAAA-----SELPQELLDQLKPGGRLLI 191 (237)
T ss_pred CCccccCCccCCcceEEEccCc-----cccHHHHHHhhccCCeEEE
Confidence 8988777778999999988653 5666777888999999875
No 160
>PLN02476 O-methyltransferase
Probab=98.51 E-value=3.1e-07 Score=78.46 Aligned_cols=91 Identities=12% Similarity=0.067 Sum_probs=68.4
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCC-CC-C-
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSN-TP-L- 185 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~-lp-~- 185 (223)
.++..+....+..+|||||||+|+.+.+++ ++|+++|.++ ..+.++.+|+.. ++ +
T Consensus 108 ~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~ 187 (278)
T PLN02476 108 QLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMI 187 (278)
T ss_pred HHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH
Confidence 444445444467899999999999888876 3799999997 357778888744 22 1
Q ss_pred ---CCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 186 ---NSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 186 ---~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
..++||+|+.-..= -+.+.++..+.++|+|||++++
T Consensus 188 ~~~~~~~FD~VFIDa~K--~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 188 QNGEGSSYDFAFVDADK--RMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred hcccCCCCCEEEECCCH--HHHHHHHHHHHHhcCCCcEEEE
Confidence 24689999976541 2567899999999999999975
No 161
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.50 E-value=1.4e-07 Score=84.55 Aligned_cols=83 Identities=16% Similarity=0.077 Sum_probs=61.0
Q ss_pred CCCeEEEECCcchHHHHHhc----CceEEEecCC---------------C--CCcEEEccCCCCC----CCCCceeEEEE
Q 027441 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------N--DPSVIACDMSNTP----LNSSSVDVAVF 195 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~--~~~~~~~d~~~lp----~~~~sfD~Vi~ 195 (223)
++.+|||+|||+|.++..++ .+|+++|+++ . ++.++.+|+..+. ....+||+|++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 57899999999999887644 4799999997 1 4568888886531 12468999997
Q ss_pred cccccCC----------CHHHHHHHHHHccCCCCEEEc
Q 027441 196 CLSLMGI----------NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 196 ~~~l~~~----------d~~~~l~e~~rvLkpgG~lvi 223 (223)
.--.... +...++..+.++|+|||+|++
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~ 337 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLT 337 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 7332111 344666778899999999873
No 162
>PRK03612 spermidine synthase; Provisional
Probab=98.48 E-value=2.7e-07 Score=85.69 Aligned_cols=83 Identities=20% Similarity=0.149 Sum_probs=61.7
Q ss_pred CCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------------CCCcEEEccCCCC-CCCCCceeE
Q 027441 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------------NDPSVIACDMSNT-PLNSSSVDV 192 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------------~~~~~~~~d~~~l-p~~~~sfD~ 192 (223)
+..+|||||||+|..+..+. .+|+++|+++ ++++++.+|.... ...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 56889999999999888775 4799999986 1345666776542 223468999
Q ss_pred EEEcccccCC------CHHHHHHHHHHccCCCCEEEc
Q 027441 193 AVFCLSLMGI------NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 193 Vi~~~~l~~~------d~~~~l~e~~rvLkpgG~lvi 223 (223)
|++.....+. --..+++.+.+.|+|||.+++
T Consensus 377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~ 413 (521)
T PRK03612 377 IIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVV 413 (521)
T ss_pred EEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEE
Confidence 9998654332 123689999999999999974
No 163
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.44 E-value=2.2e-07 Score=76.16 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=65.7
Q ss_pred HHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCC-CC----
Q 027441 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSN-TP---- 184 (223)
Q Consensus 132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~-lp---- 184 (223)
++..+.......+||+|||++|+.+.+++ ++|+.+|+++ .++.++.+|+.. ++
T Consensus 36 lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~ 115 (205)
T PF01596_consen 36 LLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELAN 115 (205)
T ss_dssp HHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHH
T ss_pred HHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHh
Confidence 33343333367899999999999888887 5899999997 357788888743 11
Q ss_pred -CCCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 185 -LNSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 185 -~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
...++||+|+.-..= -+...++..+.++|+|||++++
T Consensus 116 ~~~~~~fD~VFiDa~K--~~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 116 DGEEGQFDFVFIDADK--RNYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp TTTTTSEEEEEEESTG--GGHHHHHHHHHHHEEEEEEEEE
T ss_pred ccCCCceeEEEEcccc--cchhhHHHHHhhhccCCeEEEE
Confidence 124689999976642 2567889999999999999985
No 164
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.44 E-value=4.9e-07 Score=76.04 Aligned_cols=88 Identities=20% Similarity=0.348 Sum_probs=64.8
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCCCCC--
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLN-- 186 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~lp~~-- 186 (223)
.|+.++... |+.+|||.|.|+|.++..|+ ++|+.+|+.+ .++.+...|+....|.
T Consensus 31 ~I~~~l~i~-pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 31 YILMRLDIR-PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HHHHHcCCC-CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 445555444 89999999999999999887 5899999986 4678889998654442
Q ss_pred -CCceeEEEEcccccCCCHHHHHHHHHHcc-CCCCEEEc
Q 027441 187 -SSSVDVAVFCLSLMGINFPNYLQEAQRVL-KPRGEEQI 223 (223)
Q Consensus 187 -~~sfD~Vi~~~~l~~~d~~~~l~e~~rvL-kpgG~lvi 223 (223)
+..||.|+.-.- +|..++..+.++| +|||.|++
T Consensus 110 ~~~~~DavfLDlp----~Pw~~i~~~~~~L~~~gG~i~~ 144 (247)
T PF08704_consen 110 LESDFDAVFLDLP----DPWEAIPHAKRALKKPGGRICC 144 (247)
T ss_dssp -TTSEEEEEEESS----SGGGGHHHHHHHE-EEEEEEEE
T ss_pred ccCcccEEEEeCC----CHHHHHHHHHHHHhcCCceEEE
Confidence 367999986554 7789999999999 89999874
No 165
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.43 E-value=4e-07 Score=72.78 Aligned_cols=83 Identities=22% Similarity=0.260 Sum_probs=53.9
Q ss_pred CCCeEEEECCcchHHHHHhc------CceEEEecCCC----CCcEEEccCCCC----------CCCCCceeEEEEccccc
Q 027441 141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVSN----DPSVIACDMSNT----------PLNSSSVDVAVFCLSLM 200 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la------~~v~gvDis~~----~~~~~~~d~~~l----------p~~~~sfD~Vi~~~~l~ 200 (223)
.+.+||||||++|.|+..+. .+|+|+|+.+. .+.++.+|+.+. +-....||+|+|-.+..
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~ 102 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDMAPN 102 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-----
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccccCcceeccccccC
Confidence 45899999999999999886 46899999974 445556665321 11126899999998654
Q ss_pred CC-----CHH-------HHHHHHHHccCCCCEEEc
Q 027441 201 GI-----NFP-------NYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 201 ~~-----d~~-------~~l~e~~rvLkpgG~lvi 223 (223)
.. |.. ..+.-+...|+|||.+++
T Consensus 103 ~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~ 137 (181)
T PF01728_consen 103 VSGDRNIDEFISIRLILSQLLLALELLKPGGTFVI 137 (181)
T ss_dssp --SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEE
Confidence 33 211 555566678999998774
No 166
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.43 E-value=6.5e-07 Score=78.02 Aligned_cols=89 Identities=13% Similarity=0.197 Sum_probs=60.0
Q ss_pred HHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCCCC-CCCceeE
Q 027441 132 IVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPL-NSSSVDV 192 (223)
Q Consensus 132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp~-~~~sfD~ 192 (223)
+.+++... ++.+|||+|||+|.++..++ .+|+|+|+++ .++.|+.+|+..+.. ....||+
T Consensus 165 v~~~l~~~-~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~ 243 (315)
T PRK03522 165 ARDWVREL-PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDL 243 (315)
T ss_pred HHHHHHhc-CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeE
Confidence 34444433 46899999999999999888 5799999997 357889999876542 2457999
Q ss_pred EEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 193 AVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 193 Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
|++.---.... ..++ ++..-+.|++++++
T Consensus 244 Vv~dPPr~G~~-~~~~-~~l~~~~~~~ivyv 272 (315)
T PRK03522 244 VLVNPPRRGIG-KELC-DYLSQMAPRFILYS 272 (315)
T ss_pred EEECCCCCCcc-HHHH-HHHHHcCCCeEEEE
Confidence 99764322211 2222 33334677777764
No 167
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.43 E-value=1.3e-06 Score=64.67 Aligned_cols=79 Identities=29% Similarity=0.449 Sum_probs=59.8
Q ss_pred EEEECCcchHH--HHHhcC---ceEEEecCC--------CC-------CcEEEccCCC--CCCCC-CceeEEEEcccccC
Q 027441 145 IADFGCGDARL--AKSVKN---KVFSFDLVS--------ND-------PSVIACDMSN--TPLNS-SSVDVAVFCLSLMG 201 (223)
Q Consensus 145 ILDiGcG~G~~--a~~la~---~v~gvDis~--------~~-------~~~~~~d~~~--lp~~~-~sfD~Vi~~~~l~~ 201 (223)
+||+|||+|.. ...+.. .++|+|+++ .. +.+..++... +++.. ..||++.+...+++
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 131 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHL 131 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehhc
Confidence 99999999984 333333 688999986 11 3567777766 78877 58999944444445
Q ss_pred CCHHHHHHHHHHccCCCCEEEc
Q 027441 202 INFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 202 ~d~~~~l~e~~rvLkpgG~lvi 223 (223)
.+....+.++.++|+|+|.+++
T Consensus 132 ~~~~~~~~~~~~~l~~~g~~~~ 153 (257)
T COG0500 132 LPPAKALRELLRVLKPGGRLVL 153 (257)
T ss_pred CCHHHHHHHHHHhcCCCcEEEE
Confidence 5778999999999999998864
No 168
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.41 E-value=4.8e-07 Score=77.27 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=53.4
Q ss_pred hHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC------------CCCcEEEccCCCCCCCCCceeE
Q 027441 128 PVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS------------NDPSVIACDMSNTPLNSSSVDV 192 (223)
Q Consensus 128 ~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~------------~~~~~~~~d~~~lp~~~~sfD~ 192 (223)
..+.+++.+... ++.+|||||||+|.++..++ .+|+|+|+++ .++.++.+|+..+++++-.+|.
T Consensus 30 i~~~i~~~l~~~-~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 108 (272)
T PRK00274 30 ILDKIVDAAGPQ-PGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLK 108 (272)
T ss_pred HHHHHHHhcCCC-CcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcce
Confidence 344555655433 67899999999999999887 4799999997 3577889999888775433577
Q ss_pred EEEcccc
Q 027441 193 AVFCLSL 199 (223)
Q Consensus 193 Vi~~~~l 199 (223)
|+++.-.
T Consensus 109 vv~NlPY 115 (272)
T PRK00274 109 VVANLPY 115 (272)
T ss_pred EEEeCCc
Confidence 8776543
No 169
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.40 E-value=1.3e-06 Score=75.50 Aligned_cols=90 Identities=22% Similarity=0.260 Sum_probs=65.5
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC---------------CCCcEEEccCCCCCCCCCcee
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVD 191 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD 191 (223)
.+++...+. .+..|||+|||+|.++...+ .+|++++.|. .++.++.+-++++.++ +..|
T Consensus 168 Ail~N~sDF-~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~D 245 (517)
T KOG1500|consen 168 AILENHSDF-QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVD 245 (517)
T ss_pred HHHhccccc-CCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCc-hhcc
Confidence 445544455 78999999999999888765 5899999986 5677888889988876 5699
Q ss_pred EEEEcccccCC-CH--HHHHHHHHHccCCCCEEE
Q 027441 192 VAVFCLSLMGI-NF--PNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 192 ~Vi~~~~l~~~-d~--~~~l~e~~rvLkpgG~lv 222 (223)
+||+.-.-.-+ +. -.-.-.+.|.|+|.|.++
T Consensus 246 viISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 246 VIISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred EEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 99976544333 21 122234559999999864
No 170
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.38 E-value=1.4e-06 Score=71.88 Aligned_cols=91 Identities=18% Similarity=0.236 Sum_probs=67.3
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEE-ccCCC-CC-C
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIA-CDMSN-TP-L 185 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~-~d~~~-lp-~ 185 (223)
.++..+....+..+||+||++.|+.+.+++ .+++.+|+++ ..+.++. +|..+ +. +
T Consensus 49 ~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~ 128 (219)
T COG4122 49 ALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL 128 (219)
T ss_pred HHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc
Confidence 344444444477999999999999998887 4699999997 2355556 35522 22 4
Q ss_pred CCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 186 NSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 186 ~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
..++||+|+.-..= -+.+.++..+.++|+|||++++
T Consensus 129 ~~~~fDliFIDadK--~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 129 LDGSFDLVFIDADK--ADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred cCCCccEEEEeCCh--hhCHHHHHHHHHHhCCCcEEEE
Confidence 57899999855431 1568999999999999999984
No 171
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.38 E-value=8.4e-07 Score=75.18 Aligned_cols=68 Identities=21% Similarity=0.328 Sum_probs=53.4
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------CCCcEEEccCCCCCCCCCceeEE
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVDVA 193 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------~~~~~~~~d~~~lp~~~~sfD~V 193 (223)
+.+.+.+... ++.+|||||||+|.++..++ .+|+|+|+++ .++.++.+|+..++++ .||.|
T Consensus 19 ~~iv~~~~~~-~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~V 95 (258)
T PRK14896 19 DRIVEYAEDT-DGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKV 95 (258)
T ss_pred HHHHHhcCCC-CcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEE
Confidence 4555554433 67899999999999999887 5799999996 3577889999888765 38999
Q ss_pred EEccccc
Q 027441 194 VFCLSLM 200 (223)
Q Consensus 194 i~~~~l~ 200 (223)
+++.-++
T Consensus 96 v~NlPy~ 102 (258)
T PRK14896 96 VSNLPYQ 102 (258)
T ss_pred EEcCCcc
Confidence 9886654
No 172
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.38 E-value=1.1e-06 Score=79.70 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=59.1
Q ss_pred CCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCC----CCCCCCceeEEEEccc
Q 027441 141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSN----TPLNSSSVDVAVFCLS 198 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~----lp~~~~sfD~Vi~~~~ 198 (223)
++.+|||+|||+|.++..++ .+|+|+|+++ .++.++.+|+.. +++.+.+||+|++.-.
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPP 371 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPP 371 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcC
Confidence 56799999999999999987 5799999997 367888999854 2344567999996443
Q ss_pred ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 199 LMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 199 l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
-..+ ...++..+.+ |+|++++++
T Consensus 372 r~G~-~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 372 RKGC-AAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred CCCC-CHHHHHHHHh-cCCCEEEEE
Confidence 2221 2455555554 789888764
No 173
>PLN02672 methionine S-methyltransferase
Probab=98.35 E-value=2.3e-06 Score=84.70 Aligned_cols=99 Identities=20% Similarity=0.318 Sum_probs=66.9
Q ss_pred CCchHHHHHHHHhccC----CCCeEEEECCcchHHHHHhc-----CceEEEecCC-----------C-------------
Q 027441 125 PELPVNIIVKWLKDHS----PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-----------N------------- 171 (223)
Q Consensus 125 p~~~~~~i~~~l~~~~----~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-----------~------------- 171 (223)
|....+.+.+.|...+ ++.+|||||||+|.++..++ .+|+|+|+|+ .
T Consensus 98 PRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~ 177 (1082)
T PLN02672 98 PEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDG 177 (1082)
T ss_pred CchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccccc
Confidence 3333445555544331 23589999999999999886 4799999997 1
Q ss_pred -------CCcEEEccCCCCCCC-CCceeEEEEccccc---------------------C-----C---C----------H
Q 027441 172 -------DPSVIACDMSNTPLN-SSSVDVAVFCLSLM---------------------G-----I---N----------F 204 (223)
Q Consensus 172 -------~~~~~~~d~~~lp~~-~~sfD~Vi~~~~l~---------------------~-----~---d----------~ 204 (223)
++.++.+|+...... ...||+||++--.. | . . .
T Consensus 178 ~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~y 257 (1082)
T PLN02672 178 EGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLI 257 (1082)
T ss_pred ccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHH
Confidence 256778887653311 23699999873210 1 1 0 1
Q ss_pred HHHHHHHHHccCCCCEEEc
Q 027441 205 PNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 205 ~~~l~e~~rvLkpgG~lvi 223 (223)
..++.++.++|+|||.|++
T Consensus 258 r~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 258 ARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred HHHHHHHHHhccCCCEEEE
Confidence 4788889999999999985
No 174
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.35 E-value=7.1e-07 Score=75.16 Aligned_cols=91 Identities=11% Similarity=0.065 Sum_probs=67.5
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCC-CC-C-
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSN-TP-L- 185 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~-lp-~- 185 (223)
.++..+....+..+||+||+++|+.+.+++ ++|+.+|+++ ..+.++.+++.. ++ +
T Consensus 69 ~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~ 148 (247)
T PLN02589 69 QFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMI 148 (247)
T ss_pred HHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHH
Confidence 444444444467899999999999888776 4799999987 456777787644 22 1
Q ss_pred ----CCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 186 ----NSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 186 ----~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
..++||+|+.-.. .-....++..+.++|+|||+|++
T Consensus 149 ~~~~~~~~fD~iFiDad--K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 149 EDGKYHGTFDFIFVDAD--KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred hccccCCcccEEEecCC--HHHhHHHHHHHHHhcCCCeEEEE
Confidence 1368999997655 22567888899999999999975
No 175
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.33 E-value=2.8e-06 Score=71.65 Aligned_cols=95 Identities=26% Similarity=0.371 Sum_probs=63.0
Q ss_pred HHHHHHHHhcc--CCCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEc----cC-
Q 027441 129 VNIIVKWLKDH--SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIAC----DM- 180 (223)
Q Consensus 129 ~~~i~~~l~~~--~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~----d~- 180 (223)
++.+++.+... ..+..|||+|||+|..+..+. ..|+|+|.|. ..+.++.- |.
T Consensus 134 V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~ 213 (328)
T KOG2904|consen 134 VEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDAS 213 (328)
T ss_pred HHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccc
Confidence 34455544432 245679999999999888776 4789999997 23444422 22
Q ss_pred CCCCCCCCceeEEEEcccccCC-C--------------------------HHHHHHHHHHccCCCCEEEc
Q 027441 181 SNTPLNSSSVDVAVFCLSLMGI-N--------------------------FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 181 ~~lp~~~~sfD~Vi~~~~l~~~-d--------------------------~~~~l~e~~rvLkpgG~lvi 223 (223)
...++..+.+|+++++--.... | ...++.-+.|+|+|||.+++
T Consensus 214 ~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 214 DEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred cccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 2244667899999987432211 1 12666778899999999874
No 176
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.32 E-value=4e-06 Score=67.58 Aligned_cols=76 Identities=22% Similarity=0.236 Sum_probs=62.4
Q ss_pred eEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEcccccCCC
Q 027441 144 VIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGIN 203 (223)
Q Consensus 144 ~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d 203 (223)
+|+|||+|.|.-+..|+ .+++.+|... .++.++.+++++ +.....||+|++..+. +
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~---~ 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA---P 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS---S
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc---C
Confidence 89999999998777766 4789999886 678888888888 5567899999998873 5
Q ss_pred HHHHHHHHHHccCCCCEEEc
Q 027441 204 FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 204 ~~~~l~e~~rvLkpgG~lvi 223 (223)
...++.-+.+.|++||.+++
T Consensus 127 l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 127 LDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp HHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEE
Confidence 67899999999999999874
No 177
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.31 E-value=1.4e-06 Score=72.39 Aligned_cols=81 Identities=15% Similarity=0.230 Sum_probs=64.1
Q ss_pred CeEEEECCcchHHHHHhc-----CceEEEecCC--------------C-CCcEEEccCCCC---CCCCCceeEEEEcccc
Q 027441 143 LVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------N-DPSVIACDMSNT---PLNSSSVDVAVFCLSL 199 (223)
Q Consensus 143 ~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------------~-~~~~~~~d~~~l---p~~~~sfD~Vi~~~~l 199 (223)
..+||||||.|.+...+| ..++|+++.. - |+.+++.|+..+ -+++++.|-|...+.=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 589999999999999888 3689999986 3 778888888542 2345699999977754
Q ss_pred cCC---------CHHHHHHHHHHccCCCCEEEc
Q 027441 200 MGI---------NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 200 ~~~---------d~~~~l~e~~rvLkpgG~lvi 223 (223)
-|. -.+.++..+.++|+|||.|.+
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~ 162 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF 162 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEE
Confidence 332 234999999999999999864
No 178
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.26 E-value=6.1e-06 Score=66.81 Aligned_cols=93 Identities=11% Similarity=0.079 Sum_probs=60.7
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCC-C-C-CC
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNT-P-L-NS 187 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~l-p-~-~~ 187 (223)
.+...+...-.+.+|||++||+|.++..++ ..|+++|.++ .++.++.+|+... . + ..
T Consensus 39 a~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~ 118 (189)
T TIGR00095 39 LFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKK 118 (189)
T ss_pred HHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhcc
Confidence 344444333367899999999999988886 4799999996 2456778888432 1 1 12
Q ss_pred -CceeEEEEcccccCCCHHHHHHHHH--HccCCCCEEEc
Q 027441 188 -SSVDVAVFCLSLMGINFPNYLQEAQ--RVLKPRGEEQI 223 (223)
Q Consensus 188 -~sfD~Vi~~~~l~~~d~~~~l~e~~--rvLkpgG~lvi 223 (223)
..||+|+..=-+.......++..+. .+|+++|++++
T Consensus 119 ~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~ 157 (189)
T TIGR00095 119 PTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVV 157 (189)
T ss_pred CCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEE
Confidence 2478887655444333445555443 46889998874
No 179
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.26 E-value=2.5e-06 Score=71.98 Aligned_cols=67 Identities=21% Similarity=0.181 Sum_probs=50.0
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------CCCcEEEccCCCCCCCCCcee--
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSSSVD-- 191 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------~~~~~~~~d~~~lp~~~~sfD-- 191 (223)
+.+++.+... ++.+|||||||+|.++..++ ..|+++|+++ .++.++.+|+..++++ .||
T Consensus 19 ~~i~~~~~~~-~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~ 95 (253)
T TIGR00755 19 QKIVEAANVL-EGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQ 95 (253)
T ss_pred HHHHHhcCCC-CcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCc
Confidence 4455554433 67899999999999999987 5799999986 3467788999888875 466
Q ss_pred -EEEEcccc
Q 027441 192 -VAVFCLSL 199 (223)
Q Consensus 192 -~Vi~~~~l 199 (223)
+|++...+
T Consensus 96 ~~vvsNlPy 104 (253)
T TIGR00755 96 LKVVSNLPY 104 (253)
T ss_pred ceEEEcCCh
Confidence 66665543
No 180
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.24 E-value=2e-06 Score=70.96 Aligned_cols=82 Identities=18% Similarity=0.160 Sum_probs=62.1
Q ss_pred CCCeEEEECCcchHHHHHhc---C-ceEEEecCC-----------------CCCcEEEccCCCC--CCCCCceeEEEEc-
Q 027441 141 PSLVIADFGCGDARLAKSVK---N-KVFSFDLVS-----------------NDPSVIACDMSNT--PLNSSSVDVAVFC- 196 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la---~-~v~gvDis~-----------------~~~~~~~~d~~~l--p~~~~sfD~Vi~~- 196 (223)
.+.+|||.+.|-|+.+.... + +|+.++.++ ..+.++.+|+..+ .|+|.+||+|+-.
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDP 213 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDP 213 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeCC
Confidence 58999999999999888765 3 777777665 3457778887553 5789999999832
Q ss_pred --cccc-CCCHHHHHHHHHHccCCCCEEE
Q 027441 197 --LSLM-GINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 197 --~~l~-~~d~~~~l~e~~rvLkpgG~lv 222 (223)
+++. ++--..+..|++|+|+|||.|+
T Consensus 214 PRfS~AgeLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 214 PRFSLAGELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred CccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence 2222 2234589999999999999986
No 181
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.23 E-value=4e-06 Score=74.79 Aligned_cols=81 Identities=15% Similarity=0.157 Sum_probs=57.7
Q ss_pred CCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCCCC-CCCceeEEEEcccccC
Q 027441 141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPL-NSSSVDVAVFCLSLMG 201 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp~-~~~sfD~Vi~~~~l~~ 201 (223)
++.+|||+|||+|.++..++ ..|+|+|+++ .++.++.+|+..+.. ....||+|++.---.+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G 312 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRG 312 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCC
Confidence 45799999999999998887 5799999997 356788888865321 1245999987654333
Q ss_pred CCHHHHHHHHHHccCCCCEEEc
Q 027441 202 INFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 202 ~d~~~~l~e~~rvLkpgG~lvi 223 (223)
.+ ..++..+. .++|++++++
T Consensus 313 ~~-~~~l~~l~-~~~p~~ivyv 332 (374)
T TIGR02085 313 IG-KELCDYLS-QMAPKFILYS 332 (374)
T ss_pred Cc-HHHHHHHH-hcCCCeEEEE
Confidence 32 24445554 4789988875
No 182
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.22 E-value=1.4e-06 Score=73.48 Aligned_cols=83 Identities=19% Similarity=0.364 Sum_probs=55.9
Q ss_pred CCCeEEEECCcchHHHHHhc----CceEEEecCC-------------------------------------------CCC
Q 027441 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS-------------------------------------------NDP 173 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~-------------------------------------------~~~ 173 (223)
.+.++||||||+-.+-..-+ .+++..|.++ ..+
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 45789999999976533222 4678888875 001
Q ss_pred -cEEEccCCCC-CCCC-----CceeEEEEcccccCC--CH---HHHHHHHHHccCCCCEEEc
Q 027441 174 -SVIACDMSNT-PLNS-----SSVDVAVFCLSLMGI--NF---PNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 174 -~~~~~d~~~l-p~~~-----~sfD~Vi~~~~l~~~--d~---~~~l~e~~rvLkpgG~lvi 223 (223)
.++.+|+... |+.. ..||+|++++.++.. |. ..++..+.++|||||.|++
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil 197 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLIL 197 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 2567888664 3333 259999999999966 44 4899999999999999985
No 183
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=3.3e-06 Score=67.67 Aligned_cols=54 Identities=20% Similarity=0.364 Sum_probs=43.4
Q ss_pred CCCeEEEECCcchHHHHHhc----CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEEEEcc
Q 027441 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCL 197 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~ 197 (223)
.+.+|+|+|||||.++...+ ..|+|+|+.+ .++.|+++|+..+. ..||.|+.+-
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNP 116 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNP 116 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECC
Confidence 56789999999999887665 6899999997 36889999998875 4467777653
No 184
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.21 E-value=3.7e-06 Score=73.35 Aligned_cols=93 Identities=25% Similarity=0.301 Sum_probs=70.2
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEE-EccCCCCCCCCCcee
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVI-ACDMSNTPLNSSSVD 191 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~-~~d~~~lp~~~~sfD 191 (223)
.++-.|....++..|||==||||.++..+. .+++|.|+.. ....+. .+|+.++||++.+||
T Consensus 187 R~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vd 266 (347)
T COG1041 187 RAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVD 266 (347)
T ss_pred HHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccc
Confidence 444455555578899999999999877665 7999999986 122233 449999999999999
Q ss_pred EEEEcccc------cCCC----HHHHHHHHHHccCCCCEEEc
Q 027441 192 VAVFCLSL------MGIN----FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 192 ~Vi~~~~l------~~~d----~~~~l~e~~rvLkpgG~lvi 223 (223)
.|++---. .... ...+|..+.++|++||++++
T Consensus 267 aIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf 308 (347)
T COG1041 267 AIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVF 308 (347)
T ss_pred eEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEE
Confidence 99975422 1112 45999999999999999875
No 185
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.20 E-value=7.9e-06 Score=64.24 Aligned_cols=82 Identities=15% Similarity=0.199 Sum_probs=67.8
Q ss_pred CCCeEEEECCcchHHHHHhc------CceEEEecCC----------CCCcEEEccCCCCC-----CCCCceeEEEEcccc
Q 027441 141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------NDPSVIACDMSNTP-----LNSSSVDVAVFCLSL 199 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------~~~~~~~~d~~~lp-----~~~~sfD~Vi~~~~l 199 (223)
.+.-||++|.|||.++..+. ..+++++.++ +.+.++.+|+.++. +.+..||.|+|+.-+
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPl 127 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPL 127 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecccc
Confidence 66799999999999999886 4688999997 56678888887654 456789999999987
Q ss_pred cCCCH---HHHHHHHHHccCCCCEEE
Q 027441 200 MGINF---PNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 200 ~~~d~---~~~l~e~~rvLkpgG~lv 222 (223)
--+.. ..+|+.+...|.+||.|+
T Consensus 128 l~~P~~~~iaile~~~~rl~~gg~lv 153 (194)
T COG3963 128 LNFPMHRRIAILESLLYRLPAGGPLV 153 (194)
T ss_pred ccCcHHHHHHHHHHHHHhcCCCCeEE
Confidence 76633 388999999999999886
No 186
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.20 E-value=8.3e-06 Score=74.68 Aligned_cols=85 Identities=11% Similarity=0.091 Sum_probs=62.0
Q ss_pred ccCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCC-CCCCceeEEE-
Q 027441 138 DHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP-LNSSSVDVAV- 194 (223)
Q Consensus 138 ~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp-~~~~sfD~Vi- 194 (223)
...++.+|||++||+|.=+..++ +.|+++|+++ .++.+...|...++ .....||.|+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 33478999999999999766665 4799999997 34556667766543 2246799999
Q ss_pred ---EcccccCC-CH------------------HHHHHHHHHccCCCCEEE
Q 027441 195 ---FCLSLMGI-NF------------------PNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 195 ---~~~~l~~~-d~------------------~~~l~e~~rvLkpgG~lv 222 (223)
|+..-+.- ++ ..+|..+.++|||||+|+
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LV 239 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLV 239 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 55443322 22 278999999999999986
No 187
>PRK04148 hypothetical protein; Provisional
Probab=98.18 E-value=5.7e-06 Score=63.11 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=50.6
Q ss_pred HHHHHHhccCCCCeEEEECCcchH-HHHHhc---CceEEEecCCC--------CCcEEEccCCCCCCC-CCceeEEEEcc
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDAR-LAKSVK---NKVFSFDLVSN--------DPSVIACDMSNTPLN-SSSVDVAVFCL 197 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~-~a~~la---~~v~gvDis~~--------~~~~~~~d~~~lp~~-~~sfD~Vi~~~ 197 (223)
.|.+++... .+.+|||||||.|. ++..|+ ..|+++|+++. .+.++.+|+.+.++. ...+|+|.+..
T Consensus 7 ~l~~~~~~~-~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysir 85 (134)
T PRK04148 7 FIAENYEKG-KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIR 85 (134)
T ss_pred HHHHhcccc-cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeC
Confidence 444444333 45789999999996 787777 58999999983 457889999887655 46789998776
Q ss_pred c
Q 027441 198 S 198 (223)
Q Consensus 198 ~ 198 (223)
-
T Consensus 86 p 86 (134)
T PRK04148 86 P 86 (134)
T ss_pred C
Confidence 5
No 188
>PLN02823 spermine synthase
Probab=98.18 E-value=5.1e-06 Score=73.02 Aligned_cols=83 Identities=18% Similarity=0.170 Sum_probs=59.4
Q ss_pred CCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------------CCCcEEEccCCC-CCCCCCceeEEEE
Q 027441 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSN-TPLNSSSVDVAVF 195 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~ 195 (223)
...+||.||+|.|..+..+. .+|+.+|+++ +++.++.+|... +.-..++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 45789999999999888665 4689999997 244566677644 2333578999998
Q ss_pred cccc-------cCCCHHHHHH-HHHHccCCCCEEEc
Q 027441 196 CLSL-------MGINFPNYLQ-EAQRVLKPRGEEQI 223 (223)
Q Consensus 196 ~~~l-------~~~d~~~~l~-e~~rvLkpgG~lvi 223 (223)
-..= .++--..++. .+.+.|+|||+|++
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVT 218 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEE
Confidence 7421 1111236777 89999999999874
No 189
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.18 E-value=7.3e-06 Score=69.71 Aligned_cols=82 Identities=24% Similarity=0.282 Sum_probs=63.4
Q ss_pred CCCeEEEECCcchHHHHHhcC---ceEEEecCC-----------------------------------------------
Q 027441 141 PSLVIADFGCGDARLAKSVKN---KVFSFDLVS----------------------------------------------- 170 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la~---~v~gvDis~----------------------------------------------- 170 (223)
...+||-=|||.|.++-.++. .+.|.|.|-
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~ 135 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVD 135 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcC
Confidence 357999999999999999883 566666662
Q ss_pred --------CCCcEEEccCCCCCCCC---CceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEE
Q 027441 171 --------NDPSVIACDMSNTPLNS---SSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 171 --------~~~~~~~~d~~~lp~~~---~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lv 222 (223)
.+..+..+|+..+..++ ++||+|+.++.+.-. +...+|..+.++|||||+.|
T Consensus 136 p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 136 PSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred cccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEE
Confidence 13345567776655444 799999999776654 78899999999999999765
No 190
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.17 E-value=1.5e-05 Score=69.48 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=60.9
Q ss_pred CCeEEEECCcchHHHHHhc---CceEEEecCC-----------CCCcEEEccCCCCCCCCCceeEEEEcccccCC---CH
Q 027441 142 SLVIADFGCGDARLAKSVK---NKVFSFDLVS-----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI---NF 204 (223)
Q Consensus 142 ~~~ILDiGcG~G~~a~~la---~~v~gvDis~-----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~---d~ 204 (223)
-...+|+|.|.|..+..+. .+|-+++... +.+..+.+|+..- .|.+ |+|++.+++||. |.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~~--daI~mkWiLhdwtDedc 254 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPKG--DAIWMKWILHDWTDEDC 254 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceeccccccc-CCCc--CeEEEEeecccCChHHH
Confidence 4789999999999888776 4455555543 2256666776443 3333 699999999988 67
Q ss_pred HHHHHHHHHccCCCCEEEc
Q 027441 205 PNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 205 ~~~l~e~~rvLkpgG~lvi 223 (223)
..+|..++..|+|||.++|
T Consensus 255 vkiLknC~~sL~~~GkIiv 273 (342)
T KOG3178|consen 255 VKILKNCKKSLPPGGKIIV 273 (342)
T ss_pred HHHHHHHHHhCCCCCEEEE
Confidence 7999999999999999985
No 191
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.17 E-value=2.3e-06 Score=79.17 Aligned_cols=83 Identities=14% Similarity=0.068 Sum_probs=64.0
Q ss_pred CCCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCC--CCCCCceeEEEEccc
Q 027441 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNT--PLNSSSVDVAVFCLS 198 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~l--p~~~~sfD~Vi~~~~ 198 (223)
....+||||||.|.++..+| ..++|+|+.. .|+.++..|+..+ -++++++|.|+..+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 46789999999999988888 3689999996 3566666666432 267889999987765
Q ss_pred ccCC---------CHHHHHHHHHHccCCCCEEEc
Q 027441 199 LMGI---------NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 199 l~~~---------d~~~~l~e~~rvLkpgG~lvi 223 (223)
=-|. --+.++..+.++|+|||.|.+
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~ 460 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF 460 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence 4332 124999999999999999864
No 192
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.12 E-value=4.6e-06 Score=72.05 Aligned_cols=70 Identities=21% Similarity=0.252 Sum_probs=52.2
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC----------------CCCcEEEccCCCCCCCCCce
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSV 190 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sf 190 (223)
+.|++.+... ++..|||||||+|.++..++ .+|+|+|+++ .++.++.+|+...+++ .|
T Consensus 26 ~~Iv~~~~~~-~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~ 102 (294)
T PTZ00338 26 DKIVEKAAIK-PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--YF 102 (294)
T ss_pred HHHHHhcCCC-CcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--cc
Confidence 4455544433 67899999999999998887 5799999996 2467888998776653 68
Q ss_pred eEEEEcccccCC
Q 027441 191 DVAVFCLSLMGI 202 (223)
Q Consensus 191 D~Vi~~~~l~~~ 202 (223)
|+|+++.-.+..
T Consensus 103 d~VvaNlPY~Is 114 (294)
T PTZ00338 103 DVCVANVPYQIS 114 (294)
T ss_pred CEEEecCCcccC
Confidence 999877655433
No 193
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.07 E-value=1.1e-05 Score=73.21 Aligned_cols=83 Identities=17% Similarity=0.139 Sum_probs=62.0
Q ss_pred CCCeEEEECCcchHHHHHhc-CceEEEecCCC------CCcEEE------cc-CCCCCCCCCceeEEEEcccccCC----
Q 027441 141 PSLVIADFGCGDARLAKSVK-NKVFSFDLVSN------DPSVIA------CD-MSNTPLNSSSVDVAVFCLSLMGI---- 202 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-~~v~gvDis~~------~~~~~~------~d-~~~lp~~~~sfD~Vi~~~~l~~~---- 202 (223)
.-..|+|+.+|.|.++.+|. ..|..+.+.+. .+.+-. .| .+.++.-+.+||+|++..+|...
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC 444 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRC 444 (506)
T ss_pred ceeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccc
Confidence 34789999999999999998 34555544441 111111 11 25567778999999999988855
Q ss_pred CHHHHHHHHHHccCCCCEEEc
Q 027441 203 NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 203 d~~~~l~e~~rvLkpgG~lvi 223 (223)
+...+|-|+.|+|+|||.++|
T Consensus 445 ~~~~illEmDRILRP~G~~ii 465 (506)
T PF03141_consen 445 EMEDILLEMDRILRPGGWVII 465 (506)
T ss_pred cHHHHHHHhHhhcCCCceEEE
Confidence 778999999999999999986
No 194
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=7e-06 Score=63.14 Aligned_cols=60 Identities=23% Similarity=0.428 Sum_probs=50.4
Q ss_pred CCCeEEEECCcchHHHHHhc----CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEEEEccccc
Q 027441 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM 200 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~ 200 (223)
.+.+++|+|||.|-++.... ..|+|+||.+ .+++++++|+..+-+..+.||.++..--+-
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCC
Confidence 67899999999999886554 5799999998 356789999999888889999999776553
No 195
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.00 E-value=1.3e-05 Score=71.62 Aligned_cols=79 Identities=16% Similarity=0.060 Sum_probs=58.7
Q ss_pred CCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEcccccC
Q 027441 142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG 201 (223)
Q Consensus 142 ~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~ 201 (223)
..+|||++||+|..+..++ ..|+++|+++ .++.+..+|+..+......||+|++.- +
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 4689999999999999886 2799999997 234467777755321145799998753 1
Q ss_pred CCHHHHHHHHHHccCCCCEEEc
Q 027441 202 INFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 202 ~d~~~~l~e~~rvLkpgG~lvi 223 (223)
-.+..++..+.+.+++||+|+|
T Consensus 135 Gs~~~~l~~al~~~~~~gilyv 156 (382)
T PRK04338 135 GSPAPFLDSAIRSVKRGGLLCV 156 (382)
T ss_pred CCcHHHHHHHHHHhcCCCEEEE
Confidence 2345788887888999999975
No 196
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.95 E-value=1.3e-05 Score=65.46 Aligned_cols=79 Identities=23% Similarity=0.280 Sum_probs=55.7
Q ss_pred CCCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEccc
Q 027441 140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLS 198 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~ 198 (223)
.++..|||+-||-|.++..++ ..|+++|++| ..+..+.+|+..++. ...||.|++..-
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp 178 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP 178 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh
Confidence 378999999999999998887 4699999997 346678899887765 789999998664
Q ss_pred ccCCCHHHHHHHHHHccCCCCEEE
Q 027441 199 LMGINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 199 l~~~d~~~~l~e~~rvLkpgG~lv 222 (223)
-+ ...+|..+.+++++||++-
T Consensus 179 ~~---~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 ES---SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp SS---GGGGHHHHHHHEEEEEEEE
T ss_pred HH---HHHHHHHHHHHhcCCcEEE
Confidence 22 1368888999999999874
No 197
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.93 E-value=0.00011 Score=58.91 Aligned_cols=84 Identities=20% Similarity=0.275 Sum_probs=60.9
Q ss_pred CCCCeEEEECCcchHHHHHhc------CceEEEecCC----CCCcEEEc-cCCCC--------CCCCCceeEEEEccccc
Q 027441 140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----NDPSVIAC-DMSNT--------PLNSSSVDVAVFCLSLM 200 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----~~~~~~~~-d~~~l--------p~~~~sfD~Vi~~~~l~ 200 (223)
.|+.+|||+||.+|.|+.... +.|.|+|+-. +.+.++.+ |+.+. .+++...|+|++-++-.
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSDMapn 147 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSDMAPN 147 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEeccCCC
Confidence 578999999999999999776 4689999986 44455555 66442 24678899999887754
Q ss_pred CC-----CHH-------HHHHHHHHccCCCCEEEc
Q 027441 201 GI-----NFP-------NYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 201 ~~-----d~~-------~~l~e~~rvLkpgG~lvi 223 (223)
.+ |-. .++.-....++|+|.|+.
T Consensus 148 aTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvc 182 (232)
T KOG4589|consen 148 ATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVC 182 (232)
T ss_pred CcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEE
Confidence 33 322 445555677889999873
No 198
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.90 E-value=9.9e-05 Score=63.04 Aligned_cols=87 Identities=16% Similarity=0.162 Sum_probs=65.0
Q ss_pred HhccCCCCeEEEECCcchHHHHHhc-------CceEEEecCC---------------CCC-cEEEccCCCC---CCCCCc
Q 027441 136 LKDHSPSLVIADFGCGDARLAKSVK-------NKVFSFDLVS---------------NDP-SVIACDMSNT---PLNSSS 189 (223)
Q Consensus 136 l~~~~~~~~ILDiGcG~G~~a~~la-------~~v~gvDis~---------------~~~-~~~~~d~~~l---p~~~~s 189 (223)
|.......+||||.||.|.+..... ..|.-.|.++ .++ .|..+|+.+. .--+-.
T Consensus 130 L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~ 209 (311)
T PF12147_consen 130 LREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPA 209 (311)
T ss_pred HHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCC
Confidence 4444567899999999998755443 3677889997 334 7888888653 111344
Q ss_pred eeEEEEcccccCC-CH---HHHHHHHHHccCCCCEEE
Q 027441 190 VDVAVFCLSLMGI-NF---PNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 190 fD~Vi~~~~l~~~-d~---~~~l~e~~rvLkpgG~lv 222 (223)
.++++.++.++.+ |- ...|..+.+.|.|||+|+
T Consensus 210 P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lI 246 (311)
T PF12147_consen 210 PTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLI 246 (311)
T ss_pred CCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEE
Confidence 6999999999988 42 367889999999999997
No 199
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.86 E-value=9.7e-05 Score=60.95 Aligned_cols=85 Identities=16% Similarity=0.187 Sum_probs=61.7
Q ss_pred HHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCC-C-----CCC
Q 027441 135 WLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSN-T-----PLN 186 (223)
Q Consensus 135 ~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~-l-----p~~ 186 (223)
.++.. ...++||||.=||+.+..++ ++|+++|+.+ ..+.++.+++.+ + ..+
T Consensus 68 li~~~-~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~ 146 (237)
T KOG1663|consen 68 LIRLL-NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGE 146 (237)
T ss_pred HHHHh-CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCC
Confidence 33444 67899999988887555554 6899999997 345667766533 1 135
Q ss_pred CCceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 187 SSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 187 ~~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
.++||+++.-.- = +...++.++.++||+||+|++
T Consensus 147 ~~tfDfaFvDad---K~nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 147 SGTFDFAFVDAD---KDNYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred CCceeEEEEccc---hHHHHHHHHHHHhhcccccEEEE
Confidence 689999984321 1 455899999999999999985
No 200
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=9.9e-05 Score=58.88 Aligned_cols=81 Identities=21% Similarity=0.335 Sum_probs=56.7
Q ss_pred CCeEEEECCcchHHHHHhc------CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeEEEEcccccC
Q 027441 142 SLVIADFGCGDARLAKSVK------NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG 201 (223)
Q Consensus 142 ~~~ILDiGcG~G~~a~~la------~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~ 201 (223)
...+||||||+|..+..|+ ..+.++|+++ ..+..+++|+..-- ..++.|++++.--.--
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l-~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL-RNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhh-ccCCccEEEECCCcCc
Confidence 5789999999999988887 2467999998 34456677764422 2377888876543221
Q ss_pred C------------------C----HHHHHHHHHHccCCCCEEEc
Q 027441 202 I------------------N----FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 202 ~------------------d----~~~~l~e~~rvLkpgG~lvi 223 (223)
. + ...++..+-.+|.|.|.|++
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Yl 166 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYL 166 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEe
Confidence 1 1 23677777788899999874
No 201
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.82 E-value=8.9e-05 Score=67.18 Aligned_cols=90 Identities=26% Similarity=0.435 Sum_probs=72.0
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC--------------CCCcEEEccCCCCCCCCCceeE
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSSVDV 192 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~sfD~ 192 (223)
.|+.++... ..++|-+|||.-.+...+- ..|+.+|+|+ .-..+...|+..+.|++++||+
T Consensus 40 ~i~~~~~p~--~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdi 117 (482)
T KOG2352|consen 40 SIMKYLSPS--DFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDI 117 (482)
T ss_pred HHHHhhchh--hceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeE
Confidence 444444422 1389999999998888775 5789999997 2345778999999999999999
Q ss_pred EEEcccccCC--CH---------HHHHHHHHHccCCCCEEE
Q 027441 193 AVFCLSLMGI--NF---------PNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 193 Vi~~~~l~~~--d~---------~~~l~e~~rvLkpgG~lv 222 (223)
|+.-+.++++ |- ...+.+++|+|+|||+++
T Consensus 118 VIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~ 158 (482)
T KOG2352|consen 118 VIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYI 158 (482)
T ss_pred EEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence 9999999987 21 267899999999999975
No 202
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.81 E-value=5.9e-05 Score=60.50 Aligned_cols=86 Identities=26% Similarity=0.326 Sum_probs=58.5
Q ss_pred hccCCCCeEEEECCcchHHHHHhc---C--c---------eEEEecCC----------------CCCcEEEccCCCCCCC
Q 027441 137 KDHSPSLVIADFGCGDARLAKSVK---N--K---------VFSFDLVS----------------NDPSVIACDMSNTPLN 186 (223)
Q Consensus 137 ~~~~~~~~ILDiGcG~G~~a~~la---~--~---------v~gvDis~----------------~~~~~~~~d~~~lp~~ 186 (223)
....++..|||--||+|.+....+ . . ++|+|+++ ..+.+...|+..+++.
T Consensus 24 a~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~ 103 (179)
T PF01170_consen 24 AGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLP 103 (179)
T ss_dssp TT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGT
T ss_pred hCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccc
Confidence 333467899999999999876554 2 2 67999997 2456788899999988
Q ss_pred CCceeEEEEcccccCC-C--------HHHHHHHHHHccCCCCEEE
Q 027441 187 SSSVDVAVFCLSLMGI-N--------FPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 187 ~~sfD~Vi~~~~l~~~-d--------~~~~l~e~~rvLkpgG~lv 222 (223)
++++|+|++.--+--- . ...++.++.++|++...++
T Consensus 104 ~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 104 DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 8999999987654321 1 2378899999999944443
No 203
>PRK00536 speE spermidine synthase; Provisional
Probab=97.81 E-value=9.3e-05 Score=62.85 Aligned_cols=77 Identities=13% Similarity=0.001 Sum_probs=57.1
Q ss_pred CCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------------CCCcEEEccCCCCCCCCCceeEEEEcc
Q 027441 140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------------NDPSVIACDMSNTPLNSSSVDVAVFCL 197 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~ 197 (223)
+...+||=||.|.|..++.+. .+|+-+||.+ +++.++. .+. ....++||+||+-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCcCCEEEEcC
Confidence 456899999999999999887 4799999986 2233322 111 11236899999775
Q ss_pred cccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 198 SLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 198 ~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
. +.+.+++.+.|.|+|||+++.
T Consensus 148 ~----~~~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 148 E----PDIHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred C----CChHHHHHHHHhcCCCcEEEE
Confidence 3 447888999999999999974
No 204
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.80 E-value=0.00042 Score=60.52 Aligned_cols=84 Identities=14% Similarity=0.218 Sum_probs=56.5
Q ss_pred CCCCeEEEECCcchHHHHHhc---------CceEEEecCC---------------CCCcE--EEccCCC----CCC--CC
Q 027441 140 SPSLVIADFGCGDARLAKSVK---------NKVFSFDLVS---------------NDPSV--IACDMSN----TPL--NS 187 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la---------~~v~gvDis~---------------~~~~~--~~~d~~~----lp~--~~ 187 (223)
+++..|+|+|||.|.=+..|. ..++++|+|. +.+.+ +++|..+ +|- ..
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 356789999999998544432 2478999996 22333 5666643 221 12
Q ss_pred CceeEEEEcc-cccCCCHH---HHHHHHHH-ccCCCCEEEc
Q 027441 188 SSVDVAVFCL-SLMGINFP---NYLQEAQR-VLKPRGEEQI 223 (223)
Q Consensus 188 ~sfD~Vi~~~-~l~~~d~~---~~l~e~~r-vLkpgG~lvi 223 (223)
....+|++.+ ++..++++ .+|..+.+ +|.|||.|+|
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 3457777666 55566544 88899999 9999999876
No 205
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.80 E-value=3.4e-06 Score=68.54 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=61.7
Q ss_pred CCeEEEECCcchHHHHHhc---CceEEEecCCCCC------cEEEccCCCCCCCCCceeEEEEccccc-CCCHHHHHHHH
Q 027441 142 SLVIADFGCGDARLAKSVK---NKVFSFDLVSNDP------SVIACDMSNTPLNSSSVDVAVFCLSLM-GINFPNYLQEA 211 (223)
Q Consensus 142 ~~~ILDiGcG~G~~a~~la---~~v~gvDis~~~~------~~~~~d~~~lp~~~~sfD~Vi~~~~l~-~~d~~~~l~e~ 211 (223)
+.++||+|+|.|.++..++ .+|++.++|.... .+-+..+-+..-.+-.||+|.|...+. |.++-.+|..+
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~kLL~Di 192 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDPFKLLEDI 192 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhcChHHHHHHH
Confidence 4789999999999999888 5788999886211 111222222222345699999999998 56999999999
Q ss_pred HHccCC-CCEEEc
Q 027441 212 QRVLKP-RGEEQI 223 (223)
Q Consensus 212 ~rvLkp-gG~lvi 223 (223)
+-+|+| +|.+++
T Consensus 193 ~~vl~psngrviv 205 (288)
T KOG3987|consen 193 HLVLAPSNGRVIV 205 (288)
T ss_pred HHHhccCCCcEEE
Confidence 999999 888764
No 206
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.79 E-value=5.5e-05 Score=62.29 Aligned_cols=78 Identities=14% Similarity=0.103 Sum_probs=59.7
Q ss_pred CCeEEEECCcchHHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEcccccC
Q 027441 142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMG 201 (223)
Q Consensus 142 ~~~ILDiGcG~G~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~ 201 (223)
+.+++|||+|.|.-+..++ .+|+-+|... .|+.++.+.++++.-....||+|++..+.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence 5899999999998777765 4688888776 56888888888876322229999988763
Q ss_pred CCHHHHHHHHHHccCCCCEEE
Q 027441 202 INFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 202 ~d~~~~l~e~~rvLkpgG~lv 222 (223)
+...++.=+...|++||.++
T Consensus 146 -~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 146 -SLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred -chHHHHHHHHHhcccCCcch
Confidence 34567777888999988764
No 207
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.79 E-value=9.2e-05 Score=64.79 Aligned_cols=74 Identities=14% Similarity=0.036 Sum_probs=52.7
Q ss_pred CCCCeEEEECCcchHHHHHhc---CceEEEecCC--------CCCcEEEccCCCCCCCCCceeEEEEcccccCCCHHHHH
Q 027441 140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYL 208 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~l 208 (223)
.++..+|||||++|.|+..|. ..|+|||..+ .++.....|..........+|.|+|-.+- .|.++.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve---~P~rva 286 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE---KPARVA 286 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc---CHHHHH
Confidence 478899999999999999997 5899999886 44556666654443226779999988773 334444
Q ss_pred HHHHHccC
Q 027441 209 QEAQRVLK 216 (223)
Q Consensus 209 ~e~~rvLk 216 (223)
.-+.+-|.
T Consensus 287 ~lm~~Wl~ 294 (357)
T PRK11760 287 ELMAQWLV 294 (357)
T ss_pred HHHHHHHh
Confidence 44444443
No 208
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.78 E-value=4.8e-06 Score=64.59 Aligned_cols=76 Identities=20% Similarity=0.264 Sum_probs=53.2
Q ss_pred eEEEECCcchHHHHHhcCceEEEecCC-CCCcEEEccCCCCCCCCCceeEEEEcccccCC---CHHHHHHHHHHccCCCC
Q 027441 144 VIADFGCGDARLAKSVKNKVFSFDLVS-NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPRG 219 (223)
Q Consensus 144 ~ILDiGcG~G~~a~~la~~v~gvDis~-~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~---d~~~~l~e~~rvLkpgG 219 (223)
-.+-||||.=.+.. --+-+|+.. +.+++++-.....+|.+++.|+|.+.++++|+ .-..++.+++|+|||||
T Consensus 5 ~kv~ig~G~~r~np----gWi~~d~ed~~~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G 80 (185)
T COG4627 5 EKVKIGAGGKRVNP----GWIITDVEDRPEVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGG 80 (185)
T ss_pred eEEEEeccccccCC----CceeeehhcccccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCc
Confidence 36778998744331 112234432 23444333345578999999999999999999 33489999999999999
Q ss_pred EEEc
Q 027441 220 EEQI 223 (223)
Q Consensus 220 ~lvi 223 (223)
+|-|
T Consensus 81 ~Lri 84 (185)
T COG4627 81 KLRI 84 (185)
T ss_pred EEEE
Confidence 9864
No 209
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.78 E-value=0.00011 Score=63.09 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=59.6
Q ss_pred CeEEEECCcchHHHHHhc-----CceEEEecCC-------------------CCCcEEEccCCCC-CCCCCceeEEEEcc
Q 027441 143 LVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSNT-PLNSSSVDVAVFCL 197 (223)
Q Consensus 143 ~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------------~~~~~~~~d~~~l-p~~~~sfD~Vi~~~ 197 (223)
.+||-||.|.|..++.+. .+++.+||.+ +++.++..|...+ .-....||+|++-.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 699999999999999887 5789999987 3345556665332 11123799999765
Q ss_pred cccCC------CHHHHHHHHHHccCCCCEEEc
Q 027441 198 SLMGI------NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 198 ~l~~~------d~~~~l~e~~rvLkpgG~lvi 223 (223)
.=. . .-..+++.+.+.|+|+|+++.
T Consensus 158 tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~ 188 (282)
T COG0421 158 TDP-VGPAEALFTEEFYEGCRRALKEDGIFVA 188 (282)
T ss_pred CCC-CCcccccCCHHHHHHHHHhcCCCcEEEE
Confidence 433 2 236999999999999999874
No 210
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.73 E-value=2.1e-05 Score=63.42 Aligned_cols=95 Identities=14% Similarity=0.100 Sum_probs=64.2
Q ss_pred HHHHHHHHhcc-CCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCC-C---
Q 027441 129 VNIIVKWLKDH-SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSN-T--- 183 (223)
Q Consensus 129 ~~~i~~~l~~~-~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~-l--- 183 (223)
.+.+.+.|... -.+.++||+=||+|.++.... .+|+.||.++ ..+.++..|+.. +
T Consensus 29 realFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~ 108 (183)
T PF03602_consen 29 REALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKL 108 (183)
T ss_dssp HHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHH
T ss_pred HHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhh
Confidence 35566666654 478999999999999988665 5899999996 234566677532 2
Q ss_pred CCCCCceeEEEEcccccCCC-HHHHHHHHH--HccCCCCEEEc
Q 027441 184 PLNSSSVDVAVFCLSLMGIN-FPNYLQEAQ--RVLKPRGEEQI 223 (223)
Q Consensus 184 p~~~~sfD~Vi~~~~l~~~d-~~~~l~e~~--rvLkpgG~lvi 223 (223)
......||+|++.--...-. .+.++..+. .+|+++|++++
T Consensus 109 ~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~ 151 (183)
T PF03602_consen 109 AKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIII 151 (183)
T ss_dssp HHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEE
T ss_pred cccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEE
Confidence 12468899999876665554 377788777 78999999885
No 211
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.69 E-value=6.4e-05 Score=67.23 Aligned_cols=88 Identities=15% Similarity=0.141 Sum_probs=65.3
Q ss_pred HhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC-----------------CCCcEEEccCCCC----CCCCCce
Q 027441 136 LKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS-----------------NDPSVIACDMSNT----PLNSSSV 190 (223)
Q Consensus 136 l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~-----------------~~~~~~~~d~~~l----p~~~~sf 190 (223)
+...-.+.+|||+=|=||.++...+ .+|++||+|. ..+.++++|+..+ .-...+|
T Consensus 212 l~~~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~f 291 (393)
T COG1092 212 LGELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKF 291 (393)
T ss_pred HhhhccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcc
Confidence 3333358899999999999999887 4899999996 3456888888543 1224589
Q ss_pred eEEEEcccc-----cC----C-CHHHHHHHHHHccCCCCEEEc
Q 027441 191 DVAVFCLSL-----MG----I-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 191 D~Vi~~~~l-----~~----~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
|+|+.---- .. . +...++..+.++|+|||+|++
T Consensus 292 DlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~ 334 (393)
T COG1092 292 DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVT 334 (393)
T ss_pred cEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 999954211 01 1 566899999999999999974
No 212
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=9.9e-05 Score=62.39 Aligned_cols=72 Identities=18% Similarity=0.158 Sum_probs=55.9
Q ss_pred chHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------CCCcEEEccCCCCCCCCC-c
Q 027441 127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNSS-S 189 (223)
Q Consensus 127 ~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------~~~~~~~~d~~~lp~~~~-s 189 (223)
+..+.|.+.+... ++..|||||+|.|.++..|+ .+|+++++.+ .++.++.+|+-..+++.- .
T Consensus 17 ~v~~kIv~~a~~~-~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~ 95 (259)
T COG0030 17 NVIDKIVEAANIS-PGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQ 95 (259)
T ss_pred HHHHHHHHhcCCC-CCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcC
Confidence 3445666666655 57899999999999999998 5799999996 467789999988887643 5
Q ss_pred eeEEEEcccc
Q 027441 190 VDVAVFCLSL 199 (223)
Q Consensus 190 fD~Vi~~~~l 199 (223)
++.|+++.-.
T Consensus 96 ~~~vVaNlPY 105 (259)
T COG0030 96 PYKVVANLPY 105 (259)
T ss_pred CCEEEEcCCC
Confidence 7777766543
No 213
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.65 E-value=4.8e-05 Score=67.41 Aligned_cols=40 Identities=10% Similarity=0.350 Sum_probs=33.6
Q ss_pred CeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCC
Q 027441 143 LVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSN 182 (223)
Q Consensus 143 ~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~ 182 (223)
.+|||++||+|.++..|+ .+|+|+|+++ .++.++.+|+..
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 469999999999999887 5799999997 356788888755
No 214
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.64 E-value=0.00013 Score=63.71 Aligned_cols=61 Identities=10% Similarity=0.100 Sum_probs=41.2
Q ss_pred CCCeEEEECCcchHHHHHhc-----CceEEEecCC-----------CC------CcEEE-ccCCCCC----CCCCceeEE
Q 027441 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-----------ND------PSVIA-CDMSNTP----LNSSSVDVA 193 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-----------~~------~~~~~-~d~~~lp----~~~~sfD~V 193 (223)
...+|||||||+|.+...++ .+++|+|+++ .+ +.+.. .+...+. .+++.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 45899999999997766665 3799999997 12 22322 2222221 246789999
Q ss_pred EEcccccC
Q 027441 194 VFCLSLMG 201 (223)
Q Consensus 194 i~~~~l~~ 201 (223)
+|.=-++-
T Consensus 194 vcNPPf~~ 201 (321)
T PRK11727 194 LCNPPFHA 201 (321)
T ss_pred EeCCCCcC
Confidence 99977663
No 215
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.63 E-value=4.3e-05 Score=62.67 Aligned_cols=91 Identities=20% Similarity=0.219 Sum_probs=51.7
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC------------------------CCCcEEEccCC
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS------------------------NDPSVIACDMS 181 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~------------------------~~~~~~~~d~~ 181 (223)
.+++.+.. .++...+|||||.|......+ .+++|+++.+ ..+.+..+|+.
T Consensus 33 ~il~~~~l-~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl 111 (205)
T PF08123_consen 33 KILDELNL-TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFL 111 (205)
T ss_dssp HHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TT
T ss_pred HHHHHhCC-CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcc
Confidence 44555543 378999999999999766555 4699999996 23445566665
Q ss_pred CCCCCC---CceeEEEEcccccCCCHHHHHHHHHHccCCCCEEE
Q 027441 182 NTPLNS---SSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 182 ~lp~~~---~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lv 222 (223)
+.++.. ...|+|++....-.-+....|.++..-||||-.++
T Consensus 112 ~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 112 DPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARII 155 (205)
T ss_dssp THHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEE
T ss_pred ccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEE
Confidence 543211 23688888776321133366677778889988775
No 216
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.60 E-value=6.6e-05 Score=66.75 Aligned_cols=40 Identities=10% Similarity=0.337 Sum_probs=33.8
Q ss_pred CeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCC
Q 027441 143 LVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSN 182 (223)
Q Consensus 143 ~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~ 182 (223)
.+|||++||+|.++..++ .+|+|+|+++ .++.++.+|+..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 579999999999999887 5799999997 356788888755
No 217
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.60 E-value=0.00014 Score=58.42 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=59.9
Q ss_pred CCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCCCCCCCceeEEEEcccccCC-
Q 027441 142 SLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI- 202 (223)
Q Consensus 142 ~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~- 202 (223)
...+.|+|+|+|.++...+ .+|++++..| .++.++.+|+....| ...|+|+|-+.=..+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaLi 110 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTALI 110 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHhh
Confidence 4789999999999888765 6899999987 456788999998888 346999877643322
Q ss_pred --CHHHHHHHHHHccCCCCEEE
Q 027441 203 --NFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 203 --d~~~~l~e~~rvLkpgG~lv 222 (223)
....++..+...||-+|.++
T Consensus 111 ~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred cccccHHHHHHHHHhhcCCccc
Confidence 23367777777888877664
No 218
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00033 Score=62.14 Aligned_cols=98 Identities=14% Similarity=0.142 Sum_probs=66.2
Q ss_pred CCchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc-------CceEEEecCC---------------CCCcEEEccCCC
Q 027441 125 PELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-------NKVFSFDLVS---------------NDPSVIACDMSN 182 (223)
Q Consensus 125 p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-------~~v~gvDis~---------------~~~~~~~~d~~~ 182 (223)
.+.....+...+....++.+|||+.+++|.=+..++ ..|+++|+++ .++.++..|...
T Consensus 140 vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~ 219 (355)
T COG0144 140 VQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARR 219 (355)
T ss_pred EcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccc
Confidence 334444555555555688999999999998555554 2369999997 345677777765
Q ss_pred CC---CCCCceeEEEE----cc--ccc-CCC----------------HHHHHHHHHHccCCCCEEE
Q 027441 183 TP---LNSSSVDVAVF----CL--SLM-GIN----------------FPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 183 lp---~~~~sfD~Vi~----~~--~l~-~~d----------------~~~~l~e~~rvLkpgG~lv 222 (223)
++ .....||.|+. +. ++. |-+ -..+|..+.++|||||.|+
T Consensus 220 ~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LV 285 (355)
T COG0144 220 LAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLV 285 (355)
T ss_pred ccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 53 22235999983 22 221 111 1189999999999999997
No 219
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.58 E-value=9.9e-05 Score=63.95 Aligned_cols=99 Identities=18% Similarity=0.274 Sum_probs=60.5
Q ss_pred CCCchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc------------CceEEEecCC-----------------CCCc
Q 027441 124 WPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------------NKVFSFDLVS-----------------NDPS 174 (223)
Q Consensus 124 ~p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------------~~v~gvDis~-----------------~~~~ 174 (223)
-|...++.+...+... ++.+|||-+||+|.+...+. ..++|+|+++ ....
T Consensus 30 TP~~i~~l~~~~~~~~-~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~ 108 (311)
T PF02384_consen 30 TPREIVDLMVKLLNPK-KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNIN 108 (311)
T ss_dssp --HHHHHHHHHHHTT--TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCE
T ss_pred hHHHHHHHHHhhhhcc-ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccc
Confidence 3555666666666443 66789999999999765442 3689999987 1223
Q ss_pred EEEccCCCCCCC--CCceeEEEEcccccCC---------C-------------HHHHHHHHHHccCCCCEEEc
Q 027441 175 VIACDMSNTPLN--SSSVDVAVFCLSLMGI---------N-------------FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 175 ~~~~d~~~lp~~--~~sfD~Vi~~~~l~~~---------d-------------~~~~l~e~~rvLkpgG~lvi 223 (223)
+..+|....+.. ...||+|++.--+-.. + ...++..+.+.|++||.+++
T Consensus 109 i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~ 181 (311)
T PF02384_consen 109 IIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAI 181 (311)
T ss_dssp EEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred ccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeE
Confidence 566776444332 4789999976433210 0 11688999999999998753
No 220
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.53 E-value=9.9e-05 Score=62.19 Aligned_cols=83 Identities=18% Similarity=0.158 Sum_probs=59.3
Q ss_pred CCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------------CCCcEEEccCCCC-CCCCC-ceeEEE
Q 027441 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSNT-PLNSS-SVDVAV 194 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------------~~~~~~~~d~~~l-p~~~~-sfD~Vi 194 (223)
...+||=||.|.|..+..+. .+|+++|+++ +++.++.+|...+ .-... .||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 57899999999999998886 4799999997 3566777777432 11123 899999
Q ss_pred EcccccCC-----CHHHHHHHHHHccCCCCEEEc
Q 027441 195 FCLSLMGI-----NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 195 ~~~~l~~~-----d~~~~l~e~~rvLkpgG~lvi 223 (223)
.-..-... --..+++.+.++|+|||++++
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~ 189 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVL 189 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEE
Confidence 75543211 124899999999999999974
No 221
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.52 E-value=0.00031 Score=60.15 Aligned_cols=78 Identities=12% Similarity=0.110 Sum_probs=48.2
Q ss_pred CCCeEEEECCcchHHHHHhc------CceEEEecCCCCCcE---------------EEccC--CCCCCCCCceeEEEEcc
Q 027441 141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVSNDPSV---------------IACDM--SNTPLNSSSVDVAVFCL 197 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la------~~v~gvDis~~~~~~---------------~~~d~--~~lp~~~~sfD~Vi~~~ 197 (223)
...+|||+|||+|..+-.+. ..++++|.|+....+ ..... ...++ ...|+|++++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~DLvi~s~ 110 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF--PPDDLVIASY 110 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC--CCCcEEEEeh
Confidence 45789999999997544333 468899998711110 00111 11222 2339999999
Q ss_pred cccCC-C--HHHHHHHHHHccCCCCEEE
Q 027441 198 SLMGI-N--FPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 198 ~l~~~-d--~~~~l~e~~rvLkpgG~lv 222 (223)
+|..+ + ...++..+...+.+ .|+
T Consensus 111 ~L~EL~~~~r~~lv~~LW~~~~~--~LV 136 (274)
T PF09243_consen 111 VLNELPSAARAELVRSLWNKTAP--VLV 136 (274)
T ss_pred hhhcCCchHHHHHHHHHHHhccC--cEE
Confidence 99988 3 34677777766665 444
No 222
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00097 Score=55.44 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=63.5
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCCC--------CCcEE---EccCCCCC---CCCCceeE
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVSN--------DPSVI---ACDMSNTP---LNSSSVDV 192 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~~--------~~~~~---~~d~~~lp---~~~~sfD~ 192 (223)
.+++.+....++.++||||+.||.++..+. .+|+|+|.... +..++ ..|+..+. +. +..|+
T Consensus 69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~ 147 (245)
T COG1189 69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDL 147 (245)
T ss_pred HHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCe
Confidence 455555555688999999999999999886 58999999862 22222 23444332 22 25688
Q ss_pred EEEcccccCCCHHHHHHHHHHccCCCCEEE
Q 027441 193 AVFCLSLMGINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 193 Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lv 222 (223)
|+|--++ +....+|..+..+|+|+|.++
T Consensus 148 ~v~DvSF--ISL~~iLp~l~~l~~~~~~~v 175 (245)
T COG1189 148 IVIDVSF--ISLKLILPALLLLLKDGGDLV 175 (245)
T ss_pred EEEEeeh--hhHHHHHHHHHHhcCCCceEE
Confidence 8887764 355688888999999998876
No 223
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.39 E-value=0.0004 Score=57.45 Aligned_cols=81 Identities=17% Similarity=0.192 Sum_probs=62.1
Q ss_pred CCeEEEECCcchHHHHHhc--------------CceEEEecCC----CCCcEEEccCCCCC--------CCCCceeEEEE
Q 027441 142 SLVIADFGCGDARLAKSVK--------------NKVFSFDLVS----NDPSVIACDMSNTP--------LNSSSVDVAVF 195 (223)
Q Consensus 142 ~~~ILDiGcG~G~~a~~la--------------~~v~gvDis~----~~~~~~~~d~~~lp--------~~~~sfD~Vi~ 195 (223)
-.+++|+.+.+|.|+..|. ..+++||+-+ +.+..+++|+.... |.....|+|+|
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVvc 121 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVVC 121 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEEe
Confidence 4689999999999999886 1389999987 45566788887643 55678999999
Q ss_pred cccccCC---CH---------HHHHHHHHHccCCCCEEE
Q 027441 196 CLSLMGI---NF---------PNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 196 ~~~l~~~---d~---------~~~l~e~~rvLkpgG~lv 222 (223)
-++-.-+ |. -.+|.-..++|+|||.|+
T Consensus 122 DGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 122 DGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred CCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 8865422 22 267777889999999986
No 224
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.34 E-value=0.00027 Score=61.11 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=52.2
Q ss_pred HHHHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC-------------CCCcEEEccCCCCC--CCC
Q 027441 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSNTP--LNS 187 (223)
Q Consensus 129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~-------------~~~~~~~~d~~~lp--~~~ 187 (223)
++.+++.+... ++..+||.+||.|..+..++ .+|+|+|.++ .++.++.+|+.++. ++.
T Consensus 8 l~Evl~~L~~~-pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~ 86 (296)
T PRK00050 8 LDEVVDALAIK-PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAE 86 (296)
T ss_pred HHHHHHhhCCC-CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHc
Confidence 34666766654 67899999999999998876 3699999997 15677778876643 112
Q ss_pred --CceeEEEEccccc
Q 027441 188 --SSVDVAVFCLSLM 200 (223)
Q Consensus 188 --~sfD~Vi~~~~l~ 200 (223)
.+||.|++...+.
T Consensus 87 ~~~~vDgIl~DLGvS 101 (296)
T PRK00050 87 GLGKVDGILLDLGVS 101 (296)
T ss_pred CCCccCEEEECCCcc
Confidence 2799999776554
No 225
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.0018 Score=54.93 Aligned_cols=88 Identities=19% Similarity=0.342 Sum_probs=66.9
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC----------------CCCcEEEccCCCCCCC-
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----------------NDPSVIACDMSNTPLN- 186 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----------------~~~~~~~~d~~~lp~~- 186 (223)
..|+..|.-. |+.+||+-|.|+|.++.+++ ++++.+|+.. .++++..-|+....|.
T Consensus 95 a~I~~~L~i~-PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 95 AMILSMLEIR-PGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHhcCC-CCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 3566666655 89999999999999888876 6899999985 5788889999776554
Q ss_pred -CCceeEEEEcccccCCCHHHHHHHHHHccCCCC-EEE
Q 027441 187 -SSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRG-EEQ 222 (223)
Q Consensus 187 -~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG-~lv 222 (223)
+..+|.|+.-.- .|..++-.++.+|+.+| +|+
T Consensus 174 ks~~aDaVFLDlP----aPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 174 KSLKADAVFLDLP----APWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred cccccceEEEcCC----ChhhhhhhhHHHhhhcCceEE
Confidence 577898886544 45566667777888766 443
No 226
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.25 E-value=0.0013 Score=54.10 Aligned_cols=98 Identities=11% Similarity=0.205 Sum_probs=66.4
Q ss_pred cCCCchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC--------------CCCcEEEccCCC--
Q 027441 123 HWPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSN-- 182 (223)
Q Consensus 123 ~~p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------------~~~~~~~~d~~~-- 182 (223)
.|.....+.+.+.+. .++.+||.||-|-|.....+. .+-+-++..+ .++.++.+.-++
T Consensus 85 ~WEtpiMha~A~ai~--tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl 162 (271)
T KOG1709|consen 85 RWETPIMHALAEAIS--TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVL 162 (271)
T ss_pred hhhhHHHHHHHHHHh--hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhh
Confidence 354333333333333 378999999999999887776 2233456555 455555443333
Q ss_pred CCCCCCceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEE
Q 027441 183 TPLNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 183 lp~~~~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lv 222 (223)
..++++.||-|+.-.-.++- |...+...+.|+|||+|.|-
T Consensus 163 ~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~S 203 (271)
T KOG1709|consen 163 NTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFS 203 (271)
T ss_pred ccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEE
Confidence 13568899999977665555 88899999999999999874
No 227
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.001 Score=57.44 Aligned_cols=35 Identities=31% Similarity=0.476 Sum_probs=30.3
Q ss_pred CceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEE
Q 027441 188 SSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 188 ~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lv 222 (223)
++||+|+.++.+.-. +.-.+|..+..+|+|||+.+
T Consensus 258 ~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWI 293 (369)
T ss_pred CccceEEEEEEeechHHHHHHHHHHHHhccCCcEEE
Confidence 579999999776654 78899999999999999875
No 228
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.15 E-value=0.0011 Score=53.69 Aligned_cols=83 Identities=14% Similarity=0.186 Sum_probs=54.7
Q ss_pred CCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------------CCCcEEEccCCCCCCCCCceeE
Q 027441 140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------------NDPSVIACDMSNTPLNSSSVDV 192 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------------~~~~~~~~d~~~lp~~~~sfD~ 192 (223)
.++.+|+|+=-|.|+|++.|+ +.|+++-..+ .|+..+-.+...++ +....|+
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~ 125 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDL 125 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcccc
Confidence 378999999999999999887 4566654443 23333333333344 3344566
Q ss_pred EEEccccc--CC------CHHHHHHHHHHccCCCCEEEc
Q 027441 193 AVFCLSLM--GI------NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 193 Vi~~~~l~--~~------d~~~~l~e~~rvLkpgG~lvi 223 (223)
++.....| |. ....+..++++.|||||.++|
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V 164 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLV 164 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEE
Confidence 65433322 22 345899999999999999875
No 229
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.15 E-value=0.00022 Score=61.27 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=58.2
Q ss_pred CCCCeEEEECCcchHHHHHhc----CceEEEecCC-----------------CCCcEEEccCCCC-C-C-CCCceeEEEE
Q 027441 140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS-----------------NDPSVIACDMSNT-P-L-NSSSVDVAVF 195 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~-----------------~~~~~~~~d~~~l-p-~-~~~sfD~Vi~ 195 (223)
..+.+|||+=|=||.++...+ .+|++||+|. ..+.++..|+... . + ..+.||+||+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 367899999999999988765 4799999996 3556788887542 1 1 2468999995
Q ss_pred ccc-cc--CC----CHHHHHHHHHHccCCCCEEEc
Q 027441 196 CLS-LM--GI----NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 196 ~~~-l~--~~----d~~~~l~e~~rvLkpgG~lvi 223 (223)
--- +. .. ++..++..+.++|+|||.|++
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~ 236 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLT 236 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 421 11 11 566889999999999999874
No 230
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.14 E-value=0.0022 Score=51.64 Aligned_cols=95 Identities=14% Similarity=0.087 Sum_probs=66.9
Q ss_pred HHHHHHHHhc-cCCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCC--CC
Q 027441 129 VNIIVKWLKD-HSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNT--PL 185 (223)
Q Consensus 129 ~~~i~~~l~~-~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~l--p~ 185 (223)
.+.+.++|.. .-.+.++||+=+|+|.++.... ..++.+|.+. .+..++..|+... ..
T Consensus 30 REalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~ 109 (187)
T COG0742 30 REALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQL 109 (187)
T ss_pred HHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhc
Confidence 3566777776 3578999999999999988775 5789999986 3455666676532 12
Q ss_pred CC-CceeEEEEcccccCC--CHHHHHHH--HHHccCCCCEEEc
Q 027441 186 NS-SSVDVAVFCLSLMGI--NFPNYLQE--AQRVLKPRGEEQI 223 (223)
Q Consensus 186 ~~-~sfD~Vi~~~~l~~~--d~~~~l~e--~~rvLkpgG~lvi 223 (223)
.. ..||+|+.---++.- +....+.. -...|+|+|.+++
T Consensus 110 ~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~ 152 (187)
T COG0742 110 GTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVV 152 (187)
T ss_pred CCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEE
Confidence 22 259999987777633 33444444 4577999999985
No 231
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.12 E-value=0.0024 Score=52.73 Aligned_cols=83 Identities=18% Similarity=0.172 Sum_probs=59.2
Q ss_pred CCCCeEEEECCcchHHHHHhc------CceEEEecCC-------------CCCcEEEccCCCCC---CCCCceeEEEEcc
Q 027441 140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSNTP---LNSSSVDVAVFCL 197 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~-------------~~~~~~~~d~~~lp---~~~~sfD~Vi~~~ 197 (223)
.++.+||-+|+++|.....++ +.|+|++.|+ .|+--+..|+.... .--+.+|+|++--
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DV 151 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQDV 151 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE-
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEecC
Confidence 378999999999999777665 4899999997 67777888886521 1234799999765
Q ss_pred cccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 198 SLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 198 ~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
+ +.-...-++..+...||+||.++|
T Consensus 152 a-Qp~Qa~I~~~Na~~fLk~gG~~~i 176 (229)
T PF01269_consen 152 A-QPDQARIAALNARHFLKPGGHLII 176 (229)
T ss_dssp S-STTHHHHHHHHHHHHEEEEEEEEE
T ss_pred C-ChHHHHHHHHHHHhhccCCcEEEE
Confidence 5 222445788888899999999875
No 232
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.12 E-value=0.00062 Score=60.79 Aligned_cols=78 Identities=18% Similarity=0.112 Sum_probs=58.5
Q ss_pred CeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCC-CCCCceeEEEEccccc
Q 027441 143 LVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP-LNSSSVDVAVFCLSLM 200 (223)
Q Consensus 143 ~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp-~~~~sfD~Vi~~~~l~ 200 (223)
.+|||+.||+|..+..++ ..|+++|+++ .++.++..|+..+- .....||+|..-- +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 689999999999988876 3589999997 23456666765432 1135699998644 2
Q ss_pred CCCHHHHHHHHHHccCCCCEEEc
Q 027441 201 GINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 201 ~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
-.+..++..+.+.+++||+|+|
T Consensus 124 -Gs~~~fld~al~~~~~~glL~v 145 (374)
T TIGR00308 124 -GTPAPFVDSAIQASAERGLLLV 145 (374)
T ss_pred -CCcHHHHHHHHHhcccCCEEEE
Confidence 2445799999999999999975
No 233
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.10 E-value=0.0013 Score=55.89 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=53.4
Q ss_pred HHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC-------------CCCcEEEccCCCCCCCC---Cc
Q 027441 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS-------------NDPSVIACDMSNTPLNS---SS 189 (223)
Q Consensus 129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~-------------~~~~~~~~d~~~lp~~~---~s 189 (223)
.+.|.+.+... ++..|||||+|+|.++..|. .+|+++|+++ .++.++.+|+..+.... ..
T Consensus 19 ~~~Iv~~~~~~-~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~ 97 (262)
T PF00398_consen 19 ADKIVDALDLS-EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQ 97 (262)
T ss_dssp HHHHHHHHTCG-TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSS
T ss_pred HHHHHHhcCCC-CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCC
Confidence 35666766554 78999999999999999997 6899999996 46788899998877654 45
Q ss_pred eeEEEEcccc
Q 027441 190 VDVAVFCLSL 199 (223)
Q Consensus 190 fD~Vi~~~~l 199 (223)
...|+++.-.
T Consensus 98 ~~~vv~NlPy 107 (262)
T PF00398_consen 98 PLLVVGNLPY 107 (262)
T ss_dssp EEEEEEEETG
T ss_pred ceEEEEEecc
Confidence 5667665543
No 234
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.09 E-value=0.0014 Score=53.02 Aligned_cols=87 Identities=14% Similarity=0.227 Sum_probs=56.0
Q ss_pred HHHHHHhccC---CCCeEEEECCcchHHHHHhc----CceEEEecCC--------------CCCcEEEccCCCCCCCCCc
Q 027441 131 IIVKWLKDHS---PSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSS 189 (223)
Q Consensus 131 ~i~~~l~~~~---~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~s 189 (223)
.+.+++..++ .+.+|||+|+|+|..+...+ ..|++.|+.+ ..+.++..|+-. .+..
T Consensus 66 ~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~ 142 (218)
T COG3897 66 VLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPA 142 (218)
T ss_pred HHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcc
Confidence 3455555442 56899999999998776654 4677888876 233344444433 5678
Q ss_pred eeEEEEcccccCC-CHHHHHHHHHHccCCCCEE
Q 027441 190 VDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEE 221 (223)
Q Consensus 190 fD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~l 221 (223)
||+|+...++..- --.+++. +.+.|+..|..
T Consensus 143 ~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~ 174 (218)
T COG3897 143 FDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAA 174 (218)
T ss_pred eeEEEeeceecCchHHHHHHH-HHHHHHhCCCE
Confidence 9999999887743 3345555 55555554443
No 235
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.08 E-value=0.0026 Score=54.39 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=51.4
Q ss_pred CeEEEECCcchHHHHHhc-------CceEEEecCC-----------------CCCcEEEccCCCCCCCCCceeEEEEccc
Q 027441 143 LVIADFGCGDARLAKSVK-------NKVFSFDLVS-----------------NDPSVIACDMSNTPLNSSSVDVAVFCLS 198 (223)
Q Consensus 143 ~~ILDiGcG~G~~a~~la-------~~v~gvDis~-----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~ 198 (223)
.+|+=||||+=.++..+. ..|+++|+++ ..+.|+.+|+...+..-..||+|+....
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal 201 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL 201 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence 599999999987665443 3588999997 4567888898777655578999886554
Q ss_pred ccCC--CHHHHHHHHHHccCCCCEEEc
Q 027441 199 LMGI--NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 199 l~~~--d~~~~l~e~~rvLkpgG~lvi 223 (223)
..-. +...+|..+.+.++||+.+++
T Consensus 202 Vg~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 202 VGMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp -S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred cccccchHHHHHHHHHhhCCCCcEEEE
Confidence 4322 778999999999999998874
No 236
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=97.06 E-value=0.0016 Score=59.68 Aligned_cols=115 Identities=23% Similarity=0.336 Sum_probs=81.5
Q ss_pred hHHHHHhhcChHHHHHHHHhHHhhhccCCCchHHHHHHHHhccC--CCCeEEEECCcchHHHHHhc---------CceEE
Q 027441 97 KEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHS--PSLVIADFGCGDARLAKSVK---------NKVFS 165 (223)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~l~~~~--~~~~ILDiGcG~G~~a~~la---------~~v~g 165 (223)
...++.|.+++-.|+.|.+... ..+++...+.. ...+|+=+|+|-|.+..... -++++
T Consensus 332 ~~TYetFEkD~VKY~~Yq~Ai~-----------~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklya 400 (649)
T KOG0822|consen 332 NQTYETFEKDPVKYDQYQQAIL-----------KALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYA 400 (649)
T ss_pred hhhhhhhhccchHHHHHHHHHH-----------HHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEE
Confidence 3455777788888887764332 22333332221 14678999999999766543 25788
Q ss_pred EecCC---------------CCCcEEEccCCCCCCCCCceeEEEEcccccCC---CHHHHHHHHHHccCCCCEEE
Q 027441 166 FDLVS---------------NDPSVIACDMSNTPLNSSSVDVAVFCLSLMGI---NFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 166 vDis~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~---d~~~~l~e~~rvLkpgG~lv 222 (223)
++-+| ..+.++.+|+..++-+..+.|++++-..-.+- --+.+|..+.+.|+|+|+.+
T Consensus 401 vEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 401 VEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred EecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 88877 46788899999998556889999977655544 34699999999999999864
No 237
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.04 E-value=0.0015 Score=58.32 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=16.8
Q ss_pred CCCCceeEEEEcccccCC
Q 027441 185 LNSSSVDVAVFCLSLMGI 202 (223)
Q Consensus 185 ~~~~sfD~Vi~~~~l~~~ 202 (223)
||.++.++++++.++||+
T Consensus 158 fP~~Slh~~~Ss~slHWL 175 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWL 175 (386)
T ss_pred cCCCceEEEEeeccceec
Confidence 678999999999999998
No 238
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.0016 Score=59.20 Aligned_cols=65 Identities=20% Similarity=0.321 Sum_probs=50.8
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCCCCCC---CC
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTPLN---SS 188 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp~~---~~ 188 (223)
..+.+++... ++.++||+=||.|.++..|+ .+|+|+|+++ .|+.|..++++.+... ..
T Consensus 283 ~~a~~~~~~~-~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~ 361 (432)
T COG2265 283 ETALEWLELA-GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGY 361 (432)
T ss_pred HHHHHHHhhc-CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccC
Confidence 4455555554 66899999999999999999 5899999997 4678888988776533 34
Q ss_pred ceeEEEE
Q 027441 189 SVDVAVF 195 (223)
Q Consensus 189 sfD~Vi~ 195 (223)
.+|.|+.
T Consensus 362 ~~d~Vvv 368 (432)
T COG2265 362 KPDVVVV 368 (432)
T ss_pred CCCEEEE
Confidence 7898884
No 239
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.01 E-value=0.0021 Score=54.56 Aligned_cols=56 Identities=25% Similarity=0.331 Sum_probs=44.2
Q ss_pred CCCCeEEEECCcchHHHHHhc---CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcc
Q 027441 140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCL 197 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~ 197 (223)
.+...||+||-|||.++..|. ..|+++++.+ ....++.+|+...+++ .||.+|+..
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsNl 131 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVSNL 131 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeeccC
Confidence 378999999999999999886 6899999997 2456788888665543 488888743
No 240
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.00074 Score=59.13 Aligned_cols=83 Identities=16% Similarity=0.174 Sum_probs=51.2
Q ss_pred CCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccC--CCCCCC-CCceeEEEEc
Q 027441 141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDM--SNTPLN-SSSVDVAVFC 196 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~--~~lp~~-~~sfD~Vi~~ 196 (223)
...+|||+|.|+|..+.++. ..++-++.|+ .....-..|+ ..++++ .+.|++|+..
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 34679999999987555443 2344444444 1111222222 123333 3567877766
Q ss_pred ccccCC----CHHHHHHHHHHccCCCCEEEc
Q 027441 197 LSLMGI----NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 197 ~~l~~~----d~~~~l~e~~rvLkpgG~lvi 223 (223)
.-|-+. .....++.++.++.|||.|+|
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVi 223 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVI 223 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEE
Confidence 666555 334699999999999999986
No 241
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.97 E-value=0.0022 Score=56.50 Aligned_cols=62 Identities=24% Similarity=0.243 Sum_probs=34.6
Q ss_pred CCCeEEEECCcchHHHHHhc--------------C-------ceEEEecCC-------------------CCCcEE---E
Q 027441 141 PSLVIADFGCGDARLAKSVK--------------N-------KVFSFDLVS-------------------NDPSVI---A 177 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la--------------~-------~v~gvDis~-------------------~~~~~~---~ 177 (223)
...+|+|+||..|..+..+. . +|+--|+-. ....|+ -
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 45799999999999766553 1 345556543 012222 2
Q ss_pred ccCCCCCCCCCceeEEEEcccccCC
Q 027441 178 CDMSNTPLNSSSVDVAVFCLSLMGI 202 (223)
Q Consensus 178 ~d~~~lp~~~~sfD~Vi~~~~l~~~ 202 (223)
+.+-+--||+++.|+++++.++||+
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWL 120 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWL 120 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-
T ss_pred chhhhccCCCCceEEEEEechhhhc
Confidence 3334444789999999999999997
No 242
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.97 E-value=0.0026 Score=59.20 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=29.8
Q ss_pred CchHHHHHHHHhcc-C-----CCCeEEEECCcchHHHHHhc-------------CceEEEecCC
Q 027441 126 ELPVNIIVKWLKDH-S-----PSLVIADFGCGDARLAKSVK-------------NKVFSFDLVS 170 (223)
Q Consensus 126 ~~~~~~i~~~l~~~-~-----~~~~ILDiGcG~G~~a~~la-------------~~v~gvDis~ 170 (223)
...++.|++.+... . ...+|||.|||+|.+...+. ..++|+|+++
T Consensus 10 ~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~ 73 (524)
T TIGR02987 10 PDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDK 73 (524)
T ss_pred HHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhH
Confidence 33445555554322 1 34689999999999877654 2468899876
No 243
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.95 E-value=0.0027 Score=55.83 Aligned_cols=80 Identities=18% Similarity=0.200 Sum_probs=64.5
Q ss_pred CCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCceeEEEEcccc
Q 027441 140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL 199 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l 199 (223)
.++.+|||+=||-|.++..++ ..|+++|++| ..+..+.+|+..++.....||.|++...-
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 368999999999999999887 3499999998 23668899998877665889999987663
Q ss_pred cCCCHHHHHHHHHHccCCCCEEE
Q 027441 200 MGINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 200 ~~~d~~~~l~e~~rvLkpgG~lv 222 (223)
+-..++..+.+.|++||++.
T Consensus 267 ---~a~~fl~~A~~~~k~~g~iH 286 (341)
T COG2520 267 ---SAHEFLPLALELLKDGGIIH 286 (341)
T ss_pred ---cchhhHHHHHHHhhcCcEEE
Confidence 23467778888888899874
No 244
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.89 E-value=0.00076 Score=55.49 Aligned_cols=100 Identities=18% Similarity=0.274 Sum_probs=66.1
Q ss_pred HHHHHhhcChHHHHHHHHhHHhhhccCCCchHHHHHHHHhcc----CCCCeEEEECCcchHHHHHhc---CceEEEecCC
Q 027441 98 EALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDH----SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS 170 (223)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~l~~~----~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~ 170 (223)
+...++.....+|..+.++..-..+.|.....+.+..+++.. .....|+|.-||.|..+..++ ..|+++|+++
T Consensus 47 ~l~kywk~ryrlfsrfd~gi~md~e~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDP 126 (263)
T KOG2730|consen 47 ELFKYWKNRYRLFSRFDSGIYMDREGWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDP 126 (263)
T ss_pred HHHHHHHHHHHHHHhhccceeecccceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccH
Confidence 344566666677777776655555667655555555555432 355789999999998877776 5799999997
Q ss_pred ----------------CCCcEEEccCCC----CCCCCCceeEEEEcc
Q 027441 171 ----------------NDPSVIACDMSN----TPLNSSSVDVAVFCL 197 (223)
Q Consensus 171 ----------------~~~~~~~~d~~~----lp~~~~sfD~Vi~~~ 197 (223)
.++.|+++|+.+ +.+...-+|+|+.+.
T Consensus 127 ikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 127 VKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred HHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 467889998744 333333455555443
No 245
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.77 E-value=0.00074 Score=53.31 Aligned_cols=54 Identities=20% Similarity=0.295 Sum_probs=36.2
Q ss_pred eEEEECCcchHHHHHhc---CceEEEecCC----------------CCCcEEEccCCCCC--CCCCc-eeEEEEcc
Q 027441 144 VIADFGCGDARLAKSVK---NKVFSFDLVS----------------NDPSVIACDMSNTP--LNSSS-VDVAVFCL 197 (223)
Q Consensus 144 ~ILDiGcG~G~~a~~la---~~v~gvDis~----------------~~~~~~~~d~~~lp--~~~~s-fD~Vi~~~ 197 (223)
.|||+.||.|..+..++ .+|+++|+++ .++.++.+|..++. +.... ||+|+++-
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 69999999999999998 5899999997 47889999985532 22222 89998763
No 246
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.76 E-value=0.0091 Score=50.74 Aligned_cols=93 Identities=16% Similarity=0.208 Sum_probs=53.3
Q ss_pred HHHHHHhccCCCCeEEEECCcchH------HHHHhc--CceEEEecCC-------------CC--CcEEEccCCCCC---
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDAR------LAKSVK--NKVFSFDLVS-------------ND--PSVIACDMSNTP--- 184 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~------~a~~la--~~v~gvDis~-------------~~--~~~~~~d~~~lp--- 184 (223)
....++.....-...||||||-=. .+.... .+|+-+|..+ .+ ..++.+|+.+..
T Consensus 58 RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL 137 (267)
T PF04672_consen 58 RAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAIL 137 (267)
T ss_dssp HHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHH
T ss_pred HHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHh
Confidence 334444443234679999999422 333333 6899999997 33 568899986621
Q ss_pred --------CCCCceeEEEEcccccCC----CHHHHHHHHHHccCCCCEEEc
Q 027441 185 --------LNSSSVDVAVFCLSLMGI----NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 185 --------~~~~sfD~Vi~~~~l~~~----d~~~~l~e~~rvLkpgG~lvi 223 (223)
+.-..-=.|++..+|||+ ++..++..+...|.||.+|+|
T Consensus 138 ~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~i 188 (267)
T PF04672_consen 138 AHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAI 188 (267)
T ss_dssp CSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEE
T ss_pred cCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEE
Confidence 111333467788899998 577999999999999999986
No 247
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.76 E-value=0.0002 Score=51.98 Aligned_cols=78 Identities=17% Similarity=0.125 Sum_probs=36.2
Q ss_pred EEECCcchHHHHHhc--------CceEEEecCC---------------CCCcEEEccCCCC--CCCCCceeEEEEccccc
Q 027441 146 ADFGCGDARLAKSVK--------NKVFSFDLVS---------------NDPSVIACDMSNT--PLNSSSVDVAVFCLSLM 200 (223)
Q Consensus 146 LDiGcG~G~~a~~la--------~~v~gvDis~---------------~~~~~~~~d~~~l--p~~~~sfD~Vi~~~~l~ 200 (223)
||||+..|..+..++ .+++++|..+ .++.++.++.... .+...+||+|+.-..=.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 689999998777765 1689999987 1344555555321 12257899998766311
Q ss_pred CCCHHHHHHHHHHccCCCCEEEc
Q 027441 201 GINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 201 ~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
+-.....+..+.+.|+|||++++
T Consensus 81 ~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 81 YEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEE
Confidence 11345788889999999999985
No 248
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.64 E-value=0.0022 Score=55.18 Aligned_cols=84 Identities=18% Similarity=0.220 Sum_probs=58.3
Q ss_pred cCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCC-C-CCCCceeEEEE
Q 027441 139 HSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNT-P-LNSSSVDVAVF 195 (223)
Q Consensus 139 ~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~l-p-~~~~sfD~Vi~ 195 (223)
..++..|||+++|+|.=+..++ +.|+++|++. .++..+..|...+ + .....||.|+.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 3478899999999998666555 5899999997 3444555566544 1 22346999984
Q ss_pred ----ccc--ccCC-C----------------HHHHHHHHHHcc----CCCCEEE
Q 027441 196 ----CLS--LMGI-N----------------FPNYLQEAQRVL----KPRGEEQ 222 (223)
Q Consensus 196 ----~~~--l~~~-d----------------~~~~l~e~~rvL----kpgG~lv 222 (223)
+.. +..- + -..+|..+.+.| +|||+|+
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lv 216 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLV 216 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEE
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEE
Confidence 332 2211 1 118899999999 9999987
No 249
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.63 E-value=0.011 Score=48.47 Aligned_cols=83 Identities=13% Similarity=0.076 Sum_probs=48.4
Q ss_pred CCCeEEEECCcchHHHHHhc---------CceEEEecCC--------------CCCcEEEccCCCCC----CC--CCcee
Q 027441 141 PSLVIADFGCGDARLAKSVK---------NKVFSFDLVS--------------NDPSVIACDMSNTP----LN--SSSVD 191 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la---------~~v~gvDis~--------------~~~~~~~~d~~~lp----~~--~~sfD 191 (223)
+...|+++|.-.|.-+..++ ++|+|+|+.. .++.++.+|..+.. .. ....+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 45889999999988665554 5899999942 57888999886532 11 11234
Q ss_pred EEEEcccccCC--CHHHHHHHHHHccCCCCEEEc
Q 027441 192 VAVFCLSLMGI--NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 192 ~Vi~~~~l~~~--d~~~~l~e~~rvLkpgG~lvi 223 (223)
-++...-.+|. +....|.....+|.||++++|
T Consensus 112 ~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 112 PVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp SEEEEESS----SSHHHHHHHHHHT--TT-EEEE
T ss_pred ceEEEECCCccHHHHHHHHHHhCccCCCCCEEEE
Confidence 34444444444 777888889999999999985
No 250
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.54 E-value=0.005 Score=59.40 Aligned_cols=83 Identities=8% Similarity=0.042 Sum_probs=55.1
Q ss_pred CCCeEEEECCcchHHHHHhc-----------------------------------------------CceEEEecCC---
Q 027441 141 PSLVIADFGCGDARLAKSVK-----------------------------------------------NKVFSFDLVS--- 170 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-----------------------------------------------~~v~gvDis~--- 170 (223)
++..++|-+||+|.+....+ .+++|+|+++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 56899999999999765432 1489999997
Q ss_pred -------------CCCcEEEccCCCCCCC--CCceeEEEEcccccC-C----CHHHHHH---HHHHccCCCCEEEc
Q 027441 171 -------------NDPSVIACDMSNTPLN--SSSVDVAVFCLSLMG-I----NFPNYLQ---EAQRVLKPRGEEQI 223 (223)
Q Consensus 171 -------------~~~~~~~~d~~~lp~~--~~sfD~Vi~~~~l~~-~----d~~~~l~---e~~rvLkpgG~lvi 223 (223)
..+.+..+|+.+++.+ .++||+|++.--+-. + +...+.. +..+.+.+|+.++|
T Consensus 270 ~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~l 345 (702)
T PRK11783 270 QAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAAL 345 (702)
T ss_pred HHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 2467888999887654 357999998854421 1 2223333 33444448877654
No 251
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.52 E-value=0.0027 Score=56.30 Aligned_cols=51 Identities=20% Similarity=0.421 Sum_probs=34.7
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCC
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSN 182 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~ 182 (223)
+.+++++... ++ .|||+=||.|.++..|+ .+|+|+|+++ .++.|+.+++++
T Consensus 187 ~~~~~~l~~~-~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 187 EQALEWLDLS-KG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHCTT--TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred HHHHHHhhcC-CC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 4455555543 33 79999999999999998 6899999996 567788766543
No 252
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.28 E-value=0.0073 Score=46.32 Aligned_cols=31 Identities=19% Similarity=0.503 Sum_probs=27.1
Q ss_pred CCCCeEEEECCcchHHHHHhcC---------ceEEEecCC
Q 027441 140 SPSLVIADFGCGDARLAKSVKN---------KVFSFDLVS 170 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la~---------~v~gvDis~ 170 (223)
.+...|+|+|||.|+++..|+. +|+++|.++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~ 63 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNE 63 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCc
Confidence 4678999999999999988874 689999997
No 253
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=0.0021 Score=50.58 Aligned_cols=82 Identities=13% Similarity=0.203 Sum_probs=50.5
Q ss_pred CCCeEEEECCcc-hHHHHHhc-----CceEEEecCCCCCc-------------EEEc-----cC--CCCCCCCCceeEEE
Q 027441 141 PSLVIADFGCGD-ARLAKSVK-----NKVFSFDLVSNDPS-------------VIAC-----DM--SNTPLNSSSVDVAV 194 (223)
Q Consensus 141 ~~~~ILDiGcG~-G~~a~~la-----~~v~gvDis~~~~~-------------~~~~-----d~--~~lp~~~~sfD~Vi 194 (223)
.+..||++|.|- |..+.+++ ..|...|-+...+. ...+ +. ........+||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 457899999995 44444455 35666666541110 0011 11 11123356899999
Q ss_pred EcccccCC-CHHHHHHHHHHccCCCCEEE
Q 027441 195 FCLSLMGI-NFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 195 ~~~~l~~~-d~~~~l~e~~rvLkpgG~lv 222 (223)
|+..+-+- -...++..+.++|+|.|.-+
T Consensus 109 aADClFfdE~h~sLvdtIk~lL~p~g~Al 137 (201)
T KOG3201|consen 109 AADCLFFDEHHESLVDTIKSLLRPSGRAL 137 (201)
T ss_pred eccchhHHHHHHHHHHHHHHHhCccccee
Confidence 98876433 34688999999999988754
No 254
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.07 E-value=0.0086 Score=49.09 Aligned_cols=53 Identities=21% Similarity=0.169 Sum_probs=34.7
Q ss_pred EEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccC-CCCCCCCCceeEEEEccc
Q 027441 145 IADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDM-SNTPLNSSSVDVAVFCLS 198 (223)
Q Consensus 145 ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~-~~lp~~~~sfD~Vi~~~~ 198 (223)
|+||||..|++..+|. .+++++|+++ ..+++..+|- ..++. ....|.|+.+++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-GEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-GG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-CCCCCEEEEecC
Confidence 6899999999999997 4799999997 4566777774 33432 223788876654
No 255
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=95.92 E-value=0.012 Score=55.09 Aligned_cols=83 Identities=16% Similarity=0.149 Sum_probs=56.5
Q ss_pred CCCCeEEEECCcchHHHHHhc------CceEEEecCC----CCCcEEEccCCC----CC----CCCCceeEEEEccccc-
Q 027441 140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS----NDPSVIACDMSN----TP----LNSSSVDVAVFCLSLM- 200 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~----~~~~~~~~d~~~----lp----~~~~sfD~Vi~~~~l~- 200 (223)
.+...|||+||.+|.|..... +-|+|+||.| +++..++.|+.. .+ +.....|+|+.-++-.
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~l~t~~advVLhDgapnV 122 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKILKTWKADVVLHDGAPNV 122 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHHHHhCCCcEEeecCCCcc
Confidence 477899999999999988765 4689999998 455555666532 22 2234568888665533
Q ss_pred ---CC-CH-------HHHHHHHHHccCCCCEEE
Q 027441 201 ---GI-NF-------PNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 201 ---~~-d~-------~~~l~e~~rvLkpgG~lv 222 (223)
|+ |. -.+|.-+...|+.||.|+
T Consensus 123 g~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 123 GGNWVQDAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred chhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence 22 11 155666677788888865
No 256
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.79 E-value=0.02 Score=48.18 Aligned_cols=82 Identities=12% Similarity=0.122 Sum_probs=53.2
Q ss_pred CCCeEEEECCcchHHHHHhc----CceEEEecCC--------------------CCCcEE---EccCCCCCCCCCc-eeE
Q 027441 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS--------------------NDPSVI---ACDMSNTPLNSSS-VDV 192 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~--------------------~~~~~~---~~d~~~lp~~~~s-fD~ 192 (223)
....||++|+|+|..+...+ ..|+-.|+.. ..+.+. .++.....+.... ||+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 35679999999996555444 4666666654 011111 1222221111223 999
Q ss_pred EEEcccccCC-CHHHHHHHHHHccCCCCEEE
Q 027441 193 AVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 193 Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lv 222 (223)
|+++.++.+. .++.++..+...|..+|.++
T Consensus 166 ilasDvvy~~~~~e~Lv~tla~ll~~~~~i~ 196 (248)
T KOG2793|consen 166 ILASDVVYEEESFEGLVKTLAFLLAKDGTIF 196 (248)
T ss_pred EEEeeeeecCCcchhHHHHHHHHHhcCCeEE
Confidence 9999999887 78888888888898888544
No 257
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.61 E-value=0.017 Score=47.19 Aligned_cols=29 Identities=21% Similarity=0.481 Sum_probs=22.4
Q ss_pred CCCeEEEECCcchHHHHHhc-----CceEEEecC
Q 027441 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLV 169 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis 169 (223)
....+.|||||.|.+...|+ ..+.|++|-
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR 93 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIR 93 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhh
Confidence 34679999999999998887 246677664
No 258
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=95.60 E-value=0.016 Score=49.48 Aligned_cols=83 Identities=16% Similarity=0.128 Sum_probs=48.0
Q ss_pred CCCCeEEEECCcchHHHHHhc----CceEEEecCCCCCcEEEccC----------------------C---CCCC-CCC-
Q 027441 140 SPSLVIADFGCGDARLAKSVK----NKVFSFDLVSNDPSVIACDM----------------------S---NTPL-NSS- 188 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~~~~~~~~~d~----------------------~---~lp~-~~~- 188 (223)
..+.+|||+|||+|....... ..++..|++..-+..+..+. . +.-+ ..+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 357899999999998666554 35666777752221111110 0 0000 012
Q ss_pred -ceeEEEEcccccCCCHH-HH-HHHHHHccCCCCEEE
Q 027441 189 -SVDVAVFCLSLMGINFP-NY-LQEAQRVLKPRGEEQ 222 (223)
Q Consensus 189 -sfD~Vi~~~~l~~~d~~-~~-l~e~~rvLkpgG~lv 222 (223)
.||+|.++..+.-.+.. .+ +......++++|.++
T Consensus 195 ~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~ 231 (282)
T KOG2920|consen 195 THYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFY 231 (282)
T ss_pred cchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhh
Confidence 67777777777666333 33 556666778888765
No 259
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.57 E-value=0.041 Score=45.36 Aligned_cols=65 Identities=22% Similarity=0.209 Sum_probs=43.8
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------CCCcEEEccCCCCCCC-C
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------NDPSVIACDMSNTPLN-S 187 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------~~~~~~~~d~~~lp~~-~ 187 (223)
..+.+++. .+..++||||-.|++..+|. ..+++.|+++ ..++...+|.. .++. +
T Consensus 8 ~~va~~V~---~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl-~~l~~~ 83 (226)
T COG2384 8 TTVANLVK---QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGL-AVLELE 83 (226)
T ss_pred HHHHHHHH---cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCc-cccCcc
Confidence 45556665 34559999999999999987 4688999997 22333344441 2333 4
Q ss_pred CceeEEEEccc
Q 027441 188 SSVDVAVFCLS 198 (223)
Q Consensus 188 ~sfD~Vi~~~~ 198 (223)
+.+|+|+.+++
T Consensus 84 d~~d~ivIAGM 94 (226)
T COG2384 84 DEIDVIVIAGM 94 (226)
T ss_pred CCcCEEEEeCC
Confidence 47899887665
No 260
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=95.55 E-value=0.037 Score=49.71 Aligned_cols=82 Identities=17% Similarity=0.151 Sum_probs=57.0
Q ss_pred CCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCC---CCCCceeEEE-
Q 027441 140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTP---LNSSSVDVAV- 194 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp---~~~~sfD~Vi- 194 (223)
.++.+|||+.|.+|.=+.+++ +.|+|.|.+. .+..++..|...+| ++. +||-|+
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLL 318 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLL 318 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceeee
Confidence 378999999999998665555 5789999876 23334455665554 444 899998
Q ss_pred ---Ecc--ccc------CC----C-------HHHHHHHHHHccCCCCEEE
Q 027441 195 ---FCL--SLM------GI----N-------FPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 195 ---~~~--~l~------~~----d-------~~~~l~e~~rvLkpgG~lv 222 (223)
|++ ++. +. + -..+|..+..++++||+|+
T Consensus 319 DAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLV 368 (460)
T KOG1122|consen 319 DAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLV 368 (460)
T ss_pred cCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEE
Confidence 444 221 00 1 1178888999999999997
No 261
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.47 E-value=0.033 Score=46.81 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=46.2
Q ss_pred HHHHHHHhcc-CCCCeEEEECCcchHHHHHhc-----CceEEEecCC--------------CCCcEEEccCCCCCCCCCc
Q 027441 130 NIIVKWLKDH-SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTPLNSSS 189 (223)
Q Consensus 130 ~~i~~~l~~~-~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------------~~~~~~~~d~~~lp~~~~s 189 (223)
+.+.+.+-.. ++..+|+|||||.-.++..+. ..++|+||+. ....+...|+..-+ +...
T Consensus 93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~ 171 (251)
T PF07091_consen 93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEP 171 (251)
T ss_dssp HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSE
T ss_pred HHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCC
Confidence 4455554433 457899999999999988776 3789999997 35556677776554 3466
Q ss_pred eeEEEEcccccCC
Q 027441 190 VDVAVFCLSLMGI 202 (223)
Q Consensus 190 fD~Vi~~~~l~~~ 202 (223)
.|+++..=+++-+
T Consensus 172 ~DlaLllK~lp~l 184 (251)
T PF07091_consen 172 ADLALLLKTLPCL 184 (251)
T ss_dssp ESEEEEET-HHHH
T ss_pred cchhhHHHHHHHH
Confidence 8888877666544
No 262
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=95.39 E-value=0.014 Score=53.46 Aligned_cols=43 Identities=12% Similarity=0.378 Sum_probs=35.7
Q ss_pred CCCCeEEEECCcchHHHHHhc---CceEEEecCC---------------CCCcEEEccCCC
Q 027441 140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS---------------NDPSVIACDMSN 182 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~ 182 (223)
+.+..+||+-||||.++..++ .+|+|+++++ .|..|+++-+++
T Consensus 382 ~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 366899999999999999998 6899999997 466788875544
No 263
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=95.39 E-value=0.013 Score=44.50 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=23.7
Q ss_pred eEEEECCcchHHHHHhc-----CceEEEecCC
Q 027441 144 VIADFGCGDARLAKSVK-----NKVFSFDLVS 170 (223)
Q Consensus 144 ~ILDiGcG~G~~a~~la-----~~v~gvDis~ 170 (223)
+|||||||.|.++..++ .+|+++|+++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~ 32 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLP 32 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCH
Confidence 48999999999988876 3699999997
No 264
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.26 E-value=0.0083 Score=47.11 Aligned_cols=37 Identities=24% Similarity=0.208 Sum_probs=32.0
Q ss_pred CCceeEEEEcccccCC------CH------HHHHHHHHHccCCCCEEEc
Q 027441 187 SSSVDVAVFCLSLMGI------NF------PNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 187 ~~sfD~Vi~~~~l~~~------d~------~~~l~e~~rvLkpgG~lvi 223 (223)
.++||.+.|..+++|+ || ...+.++.++|||||.|++
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l 109 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFL 109 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEE
Confidence 5789999999999987 22 3889999999999999985
No 265
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.03 E-value=0.23 Score=40.62 Aligned_cols=83 Identities=14% Similarity=0.107 Sum_probs=56.5
Q ss_pred CCCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------CCCcEEEccCCCCC---CCCCceeEEEEccc
Q 027441 140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------NDPSVIACDMSNTP---LNSSSVDVAVFCLS 198 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------~~~~~~~~d~~~lp---~~~~sfD~Vi~~~~ 198 (223)
.++.+||=+|+.+|.....++ +.++|++.|+ .|+--+..|+.... +--...|+|+.--+
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVA 154 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDVA 154 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEecC
Confidence 478999999999998777665 5799999998 45555666664321 11245788775433
Q ss_pred ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 199 LMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 199 l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
.--...-+...+...|++||.++|
T Consensus 155 -Qp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 155 -QPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred -CchHHHHHHHHHHHhcccCCeEEE
Confidence 111234677788889999996654
No 266
>PTZ00357 methyltransferase; Provisional
Probab=94.92 E-value=0.1 Score=49.93 Aligned_cols=125 Identities=17% Similarity=0.202 Sum_probs=80.7
Q ss_pred chHHHHHhhcChHHHHHHHHhHHhhhccCCCchHH--------HH------HHHHhccC---CCCeEEEECCcchHHHHH
Q 027441 96 GKEALDYFNENPALFDMYHSGYQEQMSHWPELPVN--------II------VKWLKDHS---PSLVIADFGCGDARLAKS 158 (223)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--------~i------~~~l~~~~---~~~~ILDiGcG~G~~a~~ 158 (223)
+...++.|..++-.|+.|+......+..|...... .+ ++...... ....|+=+|+|-|.+...
T Consensus 638 ES~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdr 717 (1072)
T PTZ00357 638 SSGVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDE 717 (1072)
T ss_pred chhhHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHH
Confidence 44566888899999999987776666444210000 00 01111111 124699999999997554
Q ss_pred hc---------CceEEEecCC----------------C--------CCcEEEccCCCCCCC-----------CCceeEEE
Q 027441 159 VK---------NKVFSFDLVS----------------N--------DPSVIACDMSNTPLN-----------SSSVDVAV 194 (223)
Q Consensus 159 la---------~~v~gvDis~----------------~--------~~~~~~~d~~~lp~~-----------~~sfD~Vi 194 (223)
.. -+|++|+-++ . .+.++..|+..+..+ -+.+|+||
T Consensus 718 aLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVV 797 (1072)
T PTZ00357 718 CLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIV 797 (1072)
T ss_pred HHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceeh
Confidence 32 2688998884 1 257788899876432 13699999
Q ss_pred EcccccCC---CHHHHHHHHHHccCC----CCE
Q 027441 195 FCLSLMGI---NFPNYLQEAQRVLKP----RGE 220 (223)
Q Consensus 195 ~~~~l~~~---d~~~~l~e~~rvLkp----gG~ 220 (223)
+-..-.+- --|.+|..+.+.||+ +|+
T Consensus 798 SELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 798 SELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred HhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 86655544 346999999999987 776
No 267
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=94.90 E-value=0.065 Score=47.53 Aligned_cols=83 Identities=16% Similarity=0.152 Sum_probs=58.1
Q ss_pred CCCeEEEECCcchHHHHHhc-----CceEEEecCC----------------------CCCcEEEccCCCC-CCCCCceeE
Q 027441 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS----------------------NDPSVIACDMSNT-PLNSSSVDV 192 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~----------------------~~~~~~~~d~~~l-p~~~~sfD~ 192 (223)
...+||-+|.|.|..++.+. .+++-+|+.| +++.++..|+.++ .-..+.||+
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 45789999999999888876 5789999997 3344555555442 122357999
Q ss_pred EEEccc------ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 193 AVFCLS------LMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 193 Vi~~~~------l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
||...- +.-+--..+..-+.|.|+++|++++
T Consensus 369 vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~Vv 405 (508)
T COG4262 369 VIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVV 405 (508)
T ss_pred EEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEE
Confidence 986542 1111123788889999999999985
No 268
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.77 E-value=0.092 Score=38.50 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=23.1
Q ss_pred CCCeEEEECCcchHHHHHhcC---ceEEEecCC
Q 027441 141 PSLVIADFGCGDARLAKSVKN---KVFSFDLVS 170 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la~---~v~gvDis~ 170 (223)
+.....|||||+|.+.-.|.. .-.|+|+-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCcccccccc
Confidence 356799999999998888873 456777654
No 269
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=94.72 E-value=0.064 Score=44.19 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=22.7
Q ss_pred CCCeEEEECCcchHHHHHhc-------CceEEEecCC
Q 027441 141 PSLVIADFGCGDARLAKSVK-------NKVFSFDLVS 170 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-------~~v~gvDis~ 170 (223)
....++|-.||.|++...+. ..|+|.|+++
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~ 87 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDE 87 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-H
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCH
Confidence 34689999999999877765 4799999995
No 270
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.54 E-value=0.13 Score=45.22 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=50.6
Q ss_pred CCCCeEEEECCcchH--HHHHhc----CceEEEecCCCC---------CcEEEcc-CCCCCCCCCceeEEEEcccccCCC
Q 027441 140 SPSLVIADFGCGDAR--LAKSVK----NKVFSFDLVSND---------PSVIACD-MSNTPLNSSSVDVAVFCLSLMGIN 203 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~--~a~~la----~~v~gvDis~~~---------~~~~~~d-~~~lp~~~~sfD~Vi~~~~l~~~d 203 (223)
.|+..|+=+|+| |. .+..++ .+|+++|.++.. ..++... .....--.+.||+|+..-.
T Consensus 165 ~pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~----- 238 (339)
T COG1064 165 KPGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG----- 238 (339)
T ss_pred CCCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-----
Confidence 478999999998 54 444444 799999999832 1222222 1111111123999997766
Q ss_pred HHHHHHHHHHccCCCCEEEc
Q 027441 204 FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 204 ~~~~l~e~~rvLkpgG~lvi 223 (223)
+..+....+.|++||.+++
T Consensus 239 -~~~~~~~l~~l~~~G~~v~ 257 (339)
T COG1064 239 -PATLEPSLKALRRGGTLVL 257 (339)
T ss_pred -hhhHHHHHHHHhcCCEEEE
Confidence 5577788889999999874
No 271
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.39 E-value=0.073 Score=47.48 Aligned_cols=83 Identities=11% Similarity=0.135 Sum_probs=56.8
Q ss_pred CCCCeEEEECCcchHHHHHhc--C------------------------------------------ceEEEecCC-----
Q 027441 140 SPSLVIADFGCGDARLAKSVK--N------------------------------------------KVFSFDLVS----- 170 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la--~------------------------------------------~v~gvDis~----- 170 (223)
.++..++|--||+|.++...+ . .++|+|+++
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 455789999999999877654 1 267999997
Q ss_pred -----------CCCcEEEccCCCCCCCCCceeEEEEccccc-CC-C-------HHHHHHHHHHccCCCCEEE
Q 027441 171 -----------NDPSVIACDMSNTPLNSSSVDVAVFCLSLM-GI-N-------FPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 171 -----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~-~~-d-------~~~~l~e~~rvLkpgG~lv 222 (223)
..+.|.++|+..++-+.+.+|+|||+--.- -+ + ...+...+.+++.--+.++
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v 341 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYV 341 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEE
Confidence 457899999998875447899999885432 11 1 1244445556655544444
No 272
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=94.29 E-value=0.084 Score=45.88 Aligned_cols=70 Identities=17% Similarity=0.171 Sum_probs=51.0
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC--------------CCCcEEEccCCCCC-----C
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTP-----L 185 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------------~~~~~~~~d~~~lp-----~ 185 (223)
+.+++.|... ++..++|.=||.|..+..+. .+|+|+|.++ .++.++.++..+++ .
T Consensus 10 ~Evl~~L~~~-~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~ 88 (305)
T TIGR00006 10 DEVVEGLNIK-PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDEL 88 (305)
T ss_pred HHHHHhcCcC-CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhc
Confidence 4566666544 67899999999999888776 4799999987 25667777765542 2
Q ss_pred CCCceeEEEEccccc
Q 027441 186 NSSSVDVAVFCLSLM 200 (223)
Q Consensus 186 ~~~sfD~Vi~~~~l~ 200 (223)
...++|.|++...+.
T Consensus 89 ~~~~vDgIl~DLGvS 103 (305)
T TIGR00006 89 LVTKIDGILVDLGVS 103 (305)
T ss_pred CCCcccEEEEeccCC
Confidence 335789888776553
No 273
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=93.76 E-value=0.048 Score=41.95 Aligned_cols=62 Identities=31% Similarity=0.461 Sum_probs=39.5
Q ss_pred ceEEEecCC----------------CCCcEEEccCCCCC--CCCCceeEEEEccccc-CCC------HH---HHHHHHHH
Q 027441 162 KVFSFDLVS----------------NDPSVIACDMSNTP--LNSSSVDVAVFCLSLM-GIN------FP---NYLQEAQR 213 (223)
Q Consensus 162 ~v~gvDis~----------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~~~l~-~~d------~~---~~l~e~~r 213 (223)
+|+|+||-+ .++.++...-+++. ++.+.+|+|+++...- +-| +. .++..+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 588899885 34666665555543 2235899999887653 112 22 88999999
Q ss_pred ccCCCCEEEc
Q 027441 214 VLKPRGEEQI 223 (223)
Q Consensus 214 vLkpgG~lvi 223 (223)
+|+|||+++|
T Consensus 81 lL~~gG~i~i 90 (140)
T PF06962_consen 81 LLKPGGIITI 90 (140)
T ss_dssp HEEEEEEEEE
T ss_pred hhccCCEEEE
Confidence 9999999975
No 274
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.73 E-value=0.091 Score=46.45 Aligned_cols=78 Identities=23% Similarity=0.336 Sum_probs=50.9
Q ss_pred CCCeEEEECCcc-hHHHHHhc-----CceEEEecCCCCCcEEEc----cCCCCC-----------CCC-CceeEEEEccc
Q 027441 141 PSLVIADFGCGD-ARLAKSVK-----NKVFSFDLVSNDPSVIAC----DMSNTP-----------LNS-SSVDVAVFCLS 198 (223)
Q Consensus 141 ~~~~ILDiGcG~-G~~a~~la-----~~v~gvDis~~~~~~~~~----d~~~lp-----------~~~-~sfD~Vi~~~~ 198 (223)
++.+|+=+|||+ |.++..++ ..|+++|.++.+..+... +....+ ... ..||+|+=+-.
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 445899999998 55554444 589999999844332211 111111 111 25899985544
Q ss_pred ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 199 LMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 199 l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
-+.++..+.++++|||.+++
T Consensus 248 -----~~~~~~~ai~~~r~gG~v~~ 267 (350)
T COG1063 248 -----SPPALDQALEALRPGGTVVV 267 (350)
T ss_pred -----CHHHHHHHHHHhcCCCEEEE
Confidence 26799999999999999874
No 275
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.46 E-value=0.22 Score=38.84 Aligned_cols=69 Identities=19% Similarity=0.251 Sum_probs=46.4
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC----------------CCCcEEEccCCCCCCCCCce
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS----------------NDPSVIACDMSNTPLNSSSV 190 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------------~~~~~~~~d~~~lp~~~~sf 190 (223)
.++.++... +.++.+|+|+|.|.+....+ ..-+|+++++ ....|..-|+-...+.+-.+
T Consensus 63 nVLSll~~n-~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~ 141 (199)
T KOG4058|consen 63 NVLSLLRGN-PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRN 141 (199)
T ss_pred HHHHHccCC-CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccce
Confidence 344444443 66899999999999766655 2457889887 34556677776666666666
Q ss_pred eEEEEccccc
Q 027441 191 DVAVFCLSLM 200 (223)
Q Consensus 191 D~Vi~~~~l~ 200 (223)
-+|+-..+++
T Consensus 142 vviFgaes~m 151 (199)
T KOG4058|consen 142 VVIFGAESVM 151 (199)
T ss_pred EEEeehHHHH
Confidence 6666555544
No 276
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=91.83 E-value=0.79 Score=38.63 Aligned_cols=83 Identities=18% Similarity=0.141 Sum_probs=53.8
Q ss_pred CCCCeEEEECCcchHHHHHhc------CceEEEecCC-------------CCCcEEEccCCCCC---CCCCceeEEEEcc
Q 027441 140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVS-------------NDPSVIACDMSNTP---LNSSSVDVAVFCL 197 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~-------------~~~~~~~~d~~~lp---~~~~sfD~Vi~~~ 197 (223)
.|+.+||=||++.|.....+. .-|++++.|+ .|+.-++-|+.... +.-.-+|+|++..
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFaDv 234 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFADV 234 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEeccC
Confidence 488999999999998655554 4689999997 45555566654321 1223567776543
Q ss_pred cccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 198 SLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 198 ~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
. +-.....+.-.+...|++||.|+|
T Consensus 235 a-qpdq~RivaLNA~~FLk~gGhfvi 259 (317)
T KOG1596|consen 235 A-QPDQARIVALNAQYFLKNGGHFVI 259 (317)
T ss_pred C-CchhhhhhhhhhhhhhccCCeEEE
Confidence 3 111112445567788999999875
No 277
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=90.81 E-value=1.9 Score=36.92 Aligned_cols=78 Identities=17% Similarity=0.248 Sum_probs=48.6
Q ss_pred CCCCeEEEECCcc-hHHHHHhc----CceEEEecCCCC--------CcEEEccCCCC------CCCCCceeEEEEccccc
Q 027441 140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSND--------PSVIACDMSNT------PLNSSSVDVAVFCLSLM 200 (223)
Q Consensus 140 ~~~~~ILDiGcG~-G~~a~~la----~~v~gvDis~~~--------~~~~~~d~~~l------p~~~~sfD~Vi~~~~l~ 200 (223)
.++.+||..|||. |..+..++ .+|++++.++.. +..+....... ......+|+|+.+...
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g~- 242 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVGT- 242 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCCC-
Confidence 3667888888763 56655555 368888776522 12221111111 1234568998865431
Q ss_pred CCCHHHHHHHHHHccCCCCEEE
Q 027441 201 GINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 201 ~~d~~~~l~e~~rvLkpgG~lv 222 (223)
...+.++.+.|+++|.++
T Consensus 243 ----~~~~~~~~~~l~~~G~~v 260 (338)
T cd08254 243 ----QPTFEDAQKAVKPGGRIV 260 (338)
T ss_pred ----HHHHHHHHHHhhcCCEEE
Confidence 568889999999999986
No 278
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=90.67 E-value=1.2 Score=39.53 Aligned_cols=84 Identities=23% Similarity=0.394 Sum_probs=52.1
Q ss_pred CCCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCC---------CcEEEccCCC-C-----CC-CCCceeEEEEcc
Q 027441 140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSND---------PSVIACDMSN-T-----PL-NSSSVDVAVFCL 197 (223)
Q Consensus 140 ~~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~---------~~~~~~d~~~-l-----p~-~~~sfD~Vi~~~ 197 (223)
.++.+||.+|||. |..+..++ . .|+++|.++.. ..++...-.+ + .+ ....+|+|+.+.
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~v 262 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDAV 262 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEECC
Confidence 3678999999987 76666665 2 58888877521 1111111110 0 11 223689998764
Q ss_pred ccc-----------C-----CCHHHHHHHHHHccCCCCEEEc
Q 027441 198 SLM-----------G-----INFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 198 ~l~-----------~-----~d~~~~l~e~~rvLkpgG~lvi 223 (223)
..+ | .+....+.++.++|+|+|.+++
T Consensus 263 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~ 304 (386)
T cd08283 263 GMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSI 304 (386)
T ss_pred CCcccccccccccccccccccCchHHHHHHHHHhccCCEEEE
Confidence 321 1 1456789999999999999874
No 279
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=90.67 E-value=1.2 Score=41.63 Aligned_cols=82 Identities=21% Similarity=0.260 Sum_probs=53.1
Q ss_pred CCCeEEEECCcchHH-HHHhc----CceEEEecCCC--------CCcEEEccCCC-----------C--C--------CC
Q 027441 141 PSLVIADFGCGDARL-AKSVK----NKVFSFDLVSN--------DPSVIACDMSN-----------T--P--------LN 186 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~-a~~la----~~v~gvDis~~--------~~~~~~~d~~~-----------l--p--------~~ 186 (223)
++.+|+=+|||.-.+ +...+ ..|+++|.++. ...++..|... + . +.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~ 243 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFA 243 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHH
Confidence 679999999998553 33333 57999999972 22333222211 0 0 01
Q ss_pred C--CceeEEEEcccccCCCHHHH-HHHHHHccCCCCEEE
Q 027441 187 S--SSVDVAVFCLSLMGINFPNY-LQEAQRVLKPRGEEQ 222 (223)
Q Consensus 187 ~--~sfD~Vi~~~~l~~~d~~~~-l~e~~rvLkpgG~lv 222 (223)
+ ..+|+||.+.....-..+.+ .+++.+.+||||.++
T Consensus 244 ~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIV 282 (509)
T PRK09424 244 EQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIV 282 (509)
T ss_pred hccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEE
Confidence 1 35899998877544322344 599999999999986
No 280
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=89.24 E-value=1.6 Score=37.90 Aligned_cols=73 Identities=10% Similarity=0.049 Sum_probs=33.2
Q ss_pred HHHHHHHhccC----CCCeEEEECCcchHHHHHhc-----CceEEEecCC-----------------CCCcEEEccCC--
Q 027441 130 NIIVKWLKDHS----PSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-----------------NDPSVIACDMS-- 181 (223)
Q Consensus 130 ~~i~~~l~~~~----~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-----------------~~~~~~~~d~~-- 181 (223)
..|.+.|.... ...++||||||...+=..|. =+++|+|+++ ..|.+....-.
T Consensus 87 ~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~ 166 (299)
T PF05971_consen 87 HWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDN 166 (299)
T ss_dssp HHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-S
T ss_pred HHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccc
Confidence 34555554432 24689999999875333332 3789999997 23444332211
Q ss_pred ---CCCCCCCceeEEEEcccccCC
Q 027441 182 ---NTPLNSSSVDVAVFCLSLMGI 202 (223)
Q Consensus 182 ---~lp~~~~sfD~Vi~~~~l~~~ 202 (223)
.+...++.||+++|.--++-.
T Consensus 167 i~~~i~~~~e~~dftmCNPPFy~s 190 (299)
T PF05971_consen 167 IFDGIIQPNERFDFTMCNPPFYSS 190 (299)
T ss_dssp STTTSTT--S-EEEEEE-----SS
T ss_pred cchhhhcccceeeEEecCCccccC
Confidence 122234689999998777644
No 281
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=89.23 E-value=0.86 Score=39.70 Aligned_cols=78 Identities=13% Similarity=0.118 Sum_probs=45.8
Q ss_pred CCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcE-------EEccCC-----CCCCCCCceeEEEEcccccCC
Q 027441 141 PSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSV-------IACDMS-----NTPLNSSSVDVAVFCLSLMGI 202 (223)
Q Consensus 141 ~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~-------~~~d~~-----~lp~~~~sfD~Vi~~~~l~~~ 202 (223)
++.+||=+|||. |.++..++ . +|+++|.++.+..+ ...|.. .+....+.||+|+-+..
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G---- 244 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG---- 244 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC----
Confidence 567888889864 33444443 2 68888887622111 011111 11111234888886544
Q ss_pred CHHHHHHHHHHccCCCCEEEc
Q 027441 203 NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 203 d~~~~l~e~~rvLkpgG~lvi 223 (223)
-+..+..+.++|++||.+++
T Consensus 245 -~~~~~~~~~~~l~~~G~iv~ 264 (343)
T PRK09880 245 -HPSSINTCLEVTRAKGVMVQ 264 (343)
T ss_pred -CHHHHHHHHHHhhcCCEEEE
Confidence 14577888999999999874
No 282
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=88.83 E-value=0.3 Score=40.82 Aligned_cols=71 Identities=18% Similarity=0.059 Sum_probs=39.8
Q ss_pred HHHHHHhccC-CCCeEEEECCcchHHHHHhc---CceEEEecCC------------------------CCCcEEEccCCC
Q 027441 131 IIVKWLKDHS-PSLVIADFGCGDARLAKSVK---NKVFSFDLVS------------------------NDPSVIACDMSN 182 (223)
Q Consensus 131 ~i~~~l~~~~-~~~~ILDiGcG~G~~a~~la---~~v~gvDis~------------------------~~~~~~~~d~~~ 182 (223)
.|++.....+ ...+|||.-+|-|.-+..++ .+|++++-|+ .++.++.+|...
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~ 143 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE 143 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence 4455443321 22489999999999887776 6899999997 245677888765
Q ss_pred -CCCCCCceeEEEEcccccC
Q 027441 183 -TPLNSSSVDVAVFCLSLMG 201 (223)
Q Consensus 183 -lp~~~~sfD~Vi~~~~l~~ 201 (223)
++.++.+||+|.+--++.+
T Consensus 144 ~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 144 YLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp HCCCHSS--SEEEE--S---
T ss_pred HHhhcCCCCCEEEECCCCCC
Confidence 5666899999998877765
No 283
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=88.71 E-value=0.56 Score=41.42 Aligned_cols=97 Identities=21% Similarity=0.142 Sum_probs=68.9
Q ss_pred chHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCC------------------------CCCcEEEcc
Q 027441 127 LPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVS------------------------NDPSVIACD 179 (223)
Q Consensus 127 ~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~------------------------~~~~~~~~d 179 (223)
..+..++..++...++..|+|==.|||.+....+ +.|+|.||.- ...+++.+|
T Consensus 194 AeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D 273 (421)
T KOG2671|consen 194 AELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTAD 273 (421)
T ss_pred hhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeec
Confidence 3345777777777799999999999998766555 6899999884 134567888
Q ss_pred CCCCCCC-CCceeEEEEcccc------------------------cCCC----------HHHHHHHHHHccCCCCEEEc
Q 027441 180 MSNTPLN-SSSVDVAVFCLSL------------------------MGIN----------FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 180 ~~~lp~~-~~sfD~Vi~~~~l------------------------~~~d----------~~~~l~e~~rvLkpgG~lvi 223 (223)
..+.|+- ...||.|+|---. .|.+ ....|.=..|+|..||.|++
T Consensus 274 ~sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~ 352 (421)
T KOG2671|consen 274 FSNPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVF 352 (421)
T ss_pred ccCcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEE
Confidence 8887764 5689999986211 1221 11556667789999999874
No 284
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=88.62 E-value=0.69 Score=40.00 Aligned_cols=84 Identities=15% Similarity=0.073 Sum_probs=55.4
Q ss_pred CCCCeEEEECCcchHHHHHhc-----CceEEEecCC-------------------CCCcEEEccCCCC--CCCCCceeEE
Q 027441 140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS-------------------NDPSVIACDMSNT--PLNSSSVDVA 193 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~-------------------~~~~~~~~d~~~l--p~~~~sfD~V 193 (223)
+....+|=||-|.|.+.+... ..+.-+|+.. ..+.+..+|...+ ....+.||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 356889999999999887665 2344444443 4555666665332 1336889999
Q ss_pred EEcccccCCC-----HHHHHHHHHHccCCCCEEEc
Q 027441 194 VFCLSLMGIN-----FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 194 i~~~~l~~~d-----~~~~l~e~~rvLkpgG~lvi 223 (223)
+.--+=.-.+ ...++..+.+.||+||++++
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~ 234 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCT 234 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 8543311111 23788889999999999874
No 285
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=88.23 E-value=0.39 Score=41.79 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=24.7
Q ss_pred ceeEEEEcccccCC---C---HHHHHHHHHHccCCCCEEEc
Q 027441 189 SVDVAVFCLSLMGI---N---FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 189 sfD~Vi~~~~l~~~---d---~~~~l~e~~rvLkpgG~lvi 223 (223)
..|+|...+.+.-+ . -..+|..+...++||-+|+|
T Consensus 200 ~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLV 240 (315)
T PF11312_consen 200 SPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLV 240 (315)
T ss_pred hhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEE
Confidence 45666655555421 2 23899999999999999876
No 286
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=87.74 E-value=4.6 Score=37.50 Aligned_cols=98 Identities=18% Similarity=0.224 Sum_probs=60.0
Q ss_pred CCCchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---------CceEEEecCC------------CCC----cEEEc
Q 027441 124 WPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---------NKVFSFDLVS------------NDP----SVIAC 178 (223)
Q Consensus 124 ~p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---------~~v~gvDis~------------~~~----~~~~~ 178 (223)
-|......|...+.. .+..+|+|-.||+|.+..... ..++|.++.+ ..+ ....+
T Consensus 170 TP~~v~~liv~~l~~-~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~ 248 (489)
T COG0286 170 TPREVSELIVELLDP-EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHG 248 (489)
T ss_pred ChHHHHHHHHHHcCC-CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccc
Confidence 455666666666665 356799999999998544332 1267888776 112 22333
Q ss_pred cCCCCC-C----CCCceeEEEEccccc---CC-----------------------CHHHHHHHHHHccCCCCEEE
Q 027441 179 DMSNTP-L----NSSSVDVAVFCLSLM---GI-----------------------NFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 179 d~~~lp-~----~~~sfD~Vi~~~~l~---~~-----------------------d~~~~l~e~~rvLkpgG~lv 222 (223)
|.-.-| . ....||+|++.--+. |. ....++.++.+.|+|||...
T Consensus 249 dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aa 323 (489)
T COG0286 249 DTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAA 323 (489)
T ss_pred ccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEE
Confidence 332222 2 336799888764442 11 01378999999999988543
No 287
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=87.72 E-value=0.52 Score=36.62 Aligned_cols=81 Identities=16% Similarity=0.197 Sum_probs=42.3
Q ss_pred CCeEEEECCcchHHHHHhc-----CceEEEecCC--------CCCcEEEccCCC-CC---CCCCceeEEEEcccccCCCH
Q 027441 142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------NDPSVIACDMSN-TP---LNSSSVDVAVFCLSLMGINF 204 (223)
Q Consensus 142 ~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------~~~~~~~~d~~~-lp---~~~~sfD~Vi~~~~l~~~d~ 204 (223)
..-|||+|=|.|..=-.|. ..|+++|-.- +.-.++.+|+.. +| +-....-+|++-...++-+.
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~tl~~~~~~g~~a~laHaD~G~g~~~~ 108 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRETLPALARFGAGAALAHADIGTGDKEK 108 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHHHHHHHHHH-S-EEEEEE----S-HHH
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHHHhHHHHhcCCceEEEEeecCCCCcch
Confidence 4779999999998544443 5788887652 455688888743 22 22345566666555544322
Q ss_pred H-----HHHHHHHHccCCCCEEE
Q 027441 205 P-----NYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 205 ~-----~~l~e~~rvLkpgG~lv 222 (223)
. .+-.-+..+|.|||+++
T Consensus 109 d~a~a~~lspli~~~la~gGi~v 131 (160)
T PF12692_consen 109 DDATAAWLSPLIAPVLAPGGIMV 131 (160)
T ss_dssp HHHHHHHHHHHHGGGEEEEEEEE
T ss_pred hHHHHHhhhHHHHHHhcCCcEEE
Confidence 2 22234568899999986
No 288
>PRK10742 putative methyltransferase; Provisional
Probab=87.59 E-value=0.97 Score=38.14 Aligned_cols=72 Identities=11% Similarity=-0.023 Sum_probs=46.4
Q ss_pred HHHHHHHhccCCCC--eEEEECCcchHHHHHhc---CceEEEecCC------------C------------CCcEEEccC
Q 027441 130 NIIVKWLKDHSPSL--VIADFGCGDARLAKSVK---NKVFSFDLVS------------N------------DPSVIACDM 180 (223)
Q Consensus 130 ~~i~~~l~~~~~~~--~ILDiGcG~G~~a~~la---~~v~gvDis~------------~------------~~~~~~~d~ 180 (223)
+.|++-+... ++. +|||+=+|.|..+..++ ..|+++|-++ . ++.++.+|.
T Consensus 76 ~~l~kAvglk-~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 76 EAVAKAVGIK-GDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred cHHHHHhCCC-CCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 3455555433 444 89999999999999887 5799999886 0 123334444
Q ss_pred CCC-CCCCCceeEEEEcccccCC
Q 027441 181 SNT-PLNSSSVDVAVFCLSLMGI 202 (223)
Q Consensus 181 ~~l-p~~~~sfD~Vi~~~~l~~~ 202 (223)
..+ .-...+||+|++-=.+.|-
T Consensus 155 ~~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 155 LTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHHHhhCCCCCcEEEECCCCCCC
Confidence 321 1112479999977666553
No 289
>PRK11524 putative methyltransferase; Provisional
Probab=87.55 E-value=0.52 Score=40.42 Aligned_cols=19 Identities=37% Similarity=0.595 Sum_probs=17.1
Q ss_pred HHHHHHHHHccCCCCEEEc
Q 027441 205 PNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 205 ~~~l~e~~rvLkpgG~lvi 223 (223)
..++.++.|+|+|||.|+|
T Consensus 60 ~~~l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 60 YEWIDECHRVLKKQGTMYI 78 (284)
T ss_pred HHHHHHHHHHhCCCcEEEE
Confidence 4789999999999999985
No 290
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=86.92 E-value=5.3 Score=33.95 Aligned_cols=86 Identities=13% Similarity=0.254 Sum_probs=53.7
Q ss_pred HhccCCCCeEEEECCcchHHHHHhc---------CceEEEecCC--------------CCC--cEEEccCC----CCCCC
Q 027441 136 LKDHSPSLVIADFGCGDARLAKSVK---------NKVFSFDLVS--------------NDP--SVIACDMS----NTPLN 186 (223)
Q Consensus 136 l~~~~~~~~ILDiGcG~G~~a~~la---------~~v~gvDis~--------------~~~--~~~~~d~~----~lp~~ 186 (223)
+.....+...+|+|+|+..=+..|. .+.+.+|+|+ +.+ .-+++|.+ .+|
T Consensus 73 ia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~-- 150 (321)
T COG4301 73 IASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP-- 150 (321)
T ss_pred HHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--
Confidence 3333357899999999987665553 3678899997 122 22344442 233
Q ss_pred CCceeEEEEcc-cccCC---CHHHHHHHHHHccCCCCEEEc
Q 027441 187 SSSVDVAVFCL-SLMGI---NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 187 ~~sfD~Vi~~~-~l~~~---d~~~~l~e~~rvLkpgG~lvi 223 (223)
...--+++..+ ++-.+ +...||..+...|+||-+|++
T Consensus 151 ~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 151 RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 23333333333 33334 455999999999999998874
No 291
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=86.91 E-value=1.5 Score=37.69 Aligned_cols=76 Identities=14% Similarity=0.082 Sum_probs=45.4
Q ss_pred CCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcEEE----ccCCCCCCCCCceeEEEEcccccCCCHHHHHHH
Q 027441 141 PSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSVIA----CDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQE 210 (223)
Q Consensus 141 ~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~~~----~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~l~e 210 (223)
++.+||=+|||. |.++..++ . .|+++|..+.+..... .|.... ....||+|+-+..- +..+..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~--~~~g~Dvvid~~G~-----~~~~~~ 216 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKD--PRRDYRAIYDASGD-----PSLIDT 216 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhc--cCCCCCEEEECCCC-----HHHHHH
Confidence 456788889874 44555454 2 3667777653322111 111110 12458988865442 457788
Q ss_pred HHHccCCCCEEEc
Q 027441 211 AQRVLKPRGEEQI 223 (223)
Q Consensus 211 ~~rvLkpgG~lvi 223 (223)
+.++|+++|.+++
T Consensus 217 ~~~~l~~~G~iv~ 229 (308)
T TIGR01202 217 LVRRLAKGGEIVL 229 (308)
T ss_pred HHHhhhcCcEEEE
Confidence 8999999999874
No 292
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=86.64 E-value=1.2 Score=39.84 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=32.0
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS 170 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~ 170 (223)
.++..+.+..+-..|+|+|.|.|.++..+. -.|.|+|-+.
T Consensus 143 elvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq 186 (476)
T KOG2651|consen 143 ELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQ 186 (476)
T ss_pred HHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccch
Confidence 344455566567899999999999999998 4799999885
No 293
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=86.20 E-value=1 Score=38.48 Aligned_cols=54 Identities=11% Similarity=0.123 Sum_probs=38.7
Q ss_pred eEEEECCcchHHHHHhc----CceEEEecCCC---------CCcEEEccCCCCCCC--CCceeEEEEcc
Q 027441 144 VIADFGCGDARLAKSVK----NKVFSFDLVSN---------DPSVIACDMSNTPLN--SSSVDVAVFCL 197 (223)
Q Consensus 144 ~ILDiGcG~G~~a~~la----~~v~gvDis~~---------~~~~~~~d~~~lp~~--~~sfD~Vi~~~ 197 (223)
+++|+-||.|.++..+. ..|.++|+++. ...++.+|+..+... ...+|+|+.+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCC
Confidence 68999999999877665 35789999871 123567788776432 35699999764
No 294
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=85.57 E-value=1.7 Score=37.91 Aligned_cols=81 Identities=16% Similarity=0.237 Sum_probs=47.6
Q ss_pred CCCeEEEECCcc-hHHHHHhc------CceEEEecCCCCCcEEEc-cCC-CC-CCCC-CceeEEEEcccccCCCHHHHHH
Q 027441 141 PSLVIADFGCGD-ARLAKSVK------NKVFSFDLVSNDPSVIAC-DMS-NT-PLNS-SSVDVAVFCLSLMGINFPNYLQ 209 (223)
Q Consensus 141 ~~~~ILDiGcG~-G~~a~~la------~~v~gvDis~~~~~~~~~-d~~-~l-p~~~-~sfD~Vi~~~~l~~~d~~~~l~ 209 (223)
++.+||=+|||. |.++..++ .+|+++|.++.+..+... +.. .. .+.+ ..+|+|+-+-.- ...+..+.
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~G~--~~~~~~~~ 240 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECVGG--RGSQSAIN 240 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECCCC--CccHHHHH
Confidence 678999999875 33333221 368899988744433211 110 00 1111 247888854431 01256788
Q ss_pred HHHHccCCCCEEEc
Q 027441 210 EAQRVLKPRGEEQI 223 (223)
Q Consensus 210 e~~rvLkpgG~lvi 223 (223)
...++|++||.+++
T Consensus 241 ~~~~~l~~~G~iv~ 254 (341)
T cd08237 241 QIIDYIRPQGTIGL 254 (341)
T ss_pred HHHHhCcCCcEEEE
Confidence 89999999999874
No 295
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=85.30 E-value=1.9 Score=36.39 Aligned_cols=18 Identities=22% Similarity=0.132 Sum_probs=16.9
Q ss_pred HHHHHHHHccCCCCEEEc
Q 027441 206 NYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 206 ~~l~e~~rvLkpgG~lvi 223 (223)
.+|..++..|.|||+++|
T Consensus 193 ~aLe~lyprl~~GGiIi~ 210 (248)
T PF05711_consen 193 DALEFLYPRLSPGGIIIF 210 (248)
T ss_dssp HHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHhhcCCCeEEEE
Confidence 899999999999999986
No 296
>PHA01634 hypothetical protein
Probab=84.79 E-value=1 Score=34.23 Aligned_cols=30 Identities=13% Similarity=-0.010 Sum_probs=26.9
Q ss_pred CCCeEEEECCcchHHHHHhc----CceEEEecCC
Q 027441 141 PSLVIADFGCGDARLAKSVK----NKVFSFDLVS 170 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la----~~v~gvDis~ 170 (223)
.+.+|+|||++-|..+.+++ ..|+++++++
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~ 61 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEE 61 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCH
Confidence 67999999999999888886 5899999987
No 297
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=84.75 E-value=4.6 Score=32.97 Aligned_cols=83 Identities=14% Similarity=0.095 Sum_probs=53.7
Q ss_pred CCCeEEEECCcchHHHHHhc---------CceEEEecCC----------CCCcEEEccCCCCCC------CCCceeEEEE
Q 027441 141 PSLVIADFGCGDARLAKSVK---------NKVFSFDLVS----------NDPSVIACDMSNTPL------NSSSVDVAVF 195 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la---------~~v~gvDis~----------~~~~~~~~d~~~lp~------~~~sfD~Vi~ 195 (223)
+...|+++|.-.|..+.+++ .+|+++||+- +++.|+.++..++.. ..+.+--|+.
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 56889999999998877776 3789999884 456677777655321 1222334444
Q ss_pred cc-cccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 196 CL-SLMGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 196 ~~-~l~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
+. +-|+. ..-..|+-+.++|..|-++++
T Consensus 149 ilDsdHs~~hvLAel~~~~pllsaG~Y~vV 178 (237)
T COG3510 149 ILDSDHSMEHVLAELKLLAPLLSAGDYLVV 178 (237)
T ss_pred EecCCchHHHHHHHHHHhhhHhhcCceEEE
Confidence 44 44443 344666667778888877764
No 298
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=84.19 E-value=2.9 Score=34.14 Aligned_cols=79 Identities=22% Similarity=0.327 Sum_probs=47.9
Q ss_pred CCCCeEEEECCcc-hHHHHHhc----CceEEEecCCCCCcE-------EEccCCCCC-------CCCCceeEEEEccccc
Q 027441 140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPSV-------IACDMSNTP-------LNSSSVDVAVFCLSLM 200 (223)
Q Consensus 140 ~~~~~ILDiGcG~-G~~a~~la----~~v~gvDis~~~~~~-------~~~d~~~lp-------~~~~sfD~Vi~~~~l~ 200 (223)
.++.+||.+|+|+ |..+..++ .+|++++.++....+ ...+..... .....+|+|+.+...
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~- 211 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGG- 211 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCC-
Confidence 4678999999986 44444443 478888877522111 011111111 123568999876542
Q ss_pred CCCHHHHHHHHHHccCCCCEEEc
Q 027441 201 GINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 201 ~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
...+..+.+.|+++|.++.
T Consensus 212 ----~~~~~~~~~~l~~~G~~v~ 230 (271)
T cd05188 212 ----PETLAQALRLLRPGGRIVV 230 (271)
T ss_pred ----HHHHHHHHHhcccCCEEEE
Confidence 2567778889999999863
No 299
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=84.03 E-value=2.3 Score=40.90 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=25.1
Q ss_pred CceeEEEEcccccCCCH----HHHHHHHHHccCCCCEEE
Q 027441 188 SSVDVAVFCLSLMGINF----PNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 188 ~sfD~Vi~~~~l~~~d~----~~~l~e~~rvLkpgG~lv 222 (223)
..||+|+.-..--.-++ +.+|..+.|+++|||+|+
T Consensus 165 ~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 165 ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 45788875543222233 399999999999999986
No 300
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=83.72 E-value=1.7 Score=38.97 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=40.8
Q ss_pred CCcEEEccCCCC--CCCCCceeEEEEcccccCCCHH---HHHHHHHHccCCCCEEEc
Q 027441 172 DPSVIACDMSNT--PLNSSSVDVAVFCLSLMGINFP---NYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 172 ~~~~~~~d~~~l--p~~~~sfD~Vi~~~~l~~~d~~---~~l~e~~rvLkpgG~lvi 223 (223)
++.+..+++.+. ..++++||.++....+.|+++. ..+.++.+.++|||.+++
T Consensus 276 rv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~ 332 (380)
T PF11899_consen 276 RVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLW 332 (380)
T ss_pred eEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 445556666443 2457999999999999999544 889999999999999874
No 301
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=83.37 E-value=2 Score=37.45 Aligned_cols=70 Identities=20% Similarity=0.278 Sum_probs=43.6
Q ss_pred HHHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC--------------CCCcEEEccCCCCC-----
Q 027441 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS--------------NDPSVIACDMSNTP----- 184 (223)
Q Consensus 129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~--------------~~~~~~~~d~~~lp----- 184 (223)
++.+++.|... ++..++|.--|.|..+..+. .+|+|+|-.+ .++.++.+++.+++
T Consensus 9 l~Evl~~L~~~-~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~ 87 (310)
T PF01795_consen 9 LKEVLEALNPK-PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKE 87 (310)
T ss_dssp HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHH
T ss_pred HHHHHHhhCcC-CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHH
Confidence 35677777755 77899999999999988876 5899999986 34556666665532
Q ss_pred C-CCCceeEEEEcccc
Q 027441 185 L-NSSSVDVAVFCLSL 199 (223)
Q Consensus 185 ~-~~~sfD~Vi~~~~l 199 (223)
. ....+|.|++-..+
T Consensus 88 ~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 88 LNGINKVDGILFDLGV 103 (310)
T ss_dssp TTTTS-EEEEEEE-S-
T ss_pred ccCCCccCEEEEcccc
Confidence 2 33578888765544
No 302
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=81.63 E-value=4.6 Score=35.97 Aligned_cols=83 Identities=18% Similarity=0.115 Sum_probs=51.2
Q ss_pred CCCCeEEEECCcchHHHHHhc-----C----ceEEEecCC---------------CCCcEEEccCCCCC---------CC
Q 027441 140 SPSLVIADFGCGDARLAKSVK-----N----KVFSFDLVS---------------NDPSVIACDMSNTP---------LN 186 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la-----~----~v~gvDis~---------------~~~~~~~~d~~~lp---------~~ 186 (223)
.|+.+|||+.+.+|.=+..|. . .|++=|++. .+..+...|+..+| ..
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE 233 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence 488999999999998554432 2 678888875 22223333332222 22
Q ss_pred CCceeEEEEc-----cccc-CC-C-----------------HHHHHHHHHHccCCCCEEE
Q 027441 187 SSSVDVAVFC-----LSLM-GI-N-----------------FPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 187 ~~sfD~Vi~~-----~~l~-~~-d-----------------~~~~l~e~~rvLkpgG~lv 222 (223)
...||-|+|- .+.+ +- + -..+|....++||+||.|+
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lV 293 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLV 293 (375)
T ss_pred hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEE
Confidence 3467877743 1111 11 1 1178888899999999987
No 303
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=81.58 E-value=1.7 Score=39.72 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=22.6
Q ss_pred CeEEEECCcchHHHHHhc----CceEEEecCC
Q 027441 143 LVIADFGCGDARLAKSVK----NKVFSFDLVS 170 (223)
Q Consensus 143 ~~ILDiGcG~G~~a~~la----~~v~gvDis~ 170 (223)
..|||||+|||.++...+ ..|++++.--
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~Evfk 99 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFK 99 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhc
Confidence 579999999999887665 4788887664
No 304
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=81.32 E-value=4.1 Score=35.54 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=45.8
Q ss_pred CCCeEEEECCcc-hHHHHHhc----CceEEEec---CCCC--------CcEEEccCCCCC----CCCCceeEEEEccccc
Q 027441 141 PSLVIADFGCGD-ARLAKSVK----NKVFSFDL---VSND--------PSVIACDMSNTP----LNSSSVDVAVFCLSLM 200 (223)
Q Consensus 141 ~~~~ILDiGcG~-G~~a~~la----~~v~gvDi---s~~~--------~~~~~~d~~~lp----~~~~sfD~Vi~~~~l~ 200 (223)
++.+||=+|||. |.++..++ .+|++++. ++.+ .+++ +..... .....||+|+-+..
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~g-- 247 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEATG-- 247 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECcC--
Confidence 567899999875 44444444 47888876 3311 1221 111111 01245888886554
Q ss_pred CCCHHHHHHHHHHccCCCCEEEc
Q 027441 201 GINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 201 ~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
.+..+.++.++|++||.+++
T Consensus 248 ---~~~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 248 ---VPPLAFEALPALAPNGVVIL 267 (355)
T ss_pred ---CHHHHHHHHHHccCCcEEEE
Confidence 14578889999999999863
No 305
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=80.64 E-value=2.1 Score=34.40 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=22.8
Q ss_pred CCCCeEEEECCcchHHHHHhc---CceEEEecCC
Q 027441 140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS 170 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~ 170 (223)
.++..|||.=||+|..+.+.. .+.+|+|+++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~ 223 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDE 223 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSH
T ss_pred ccceeeehhhhccChHHHHHHHcCCeEEEEeCCH
Confidence 478999999999998766554 6899999986
No 306
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=80.52 E-value=9.8 Score=29.82 Aligned_cols=78 Identities=13% Similarity=0.079 Sum_probs=36.0
Q ss_pred CCCeEEEECCcchHHHHHhc----Cc--eEEEecCCCCC-------cEEEccCCCCCCCCCceeEEEEcccccCCCHHHH
Q 027441 141 PSLVIADFGCGDARLAKSVK----NK--VFSFDLVSNDP-------SVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNY 207 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la----~~--v~gvDis~~~~-------~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~ 207 (223)
.+.+|.=.|+|+...+..-. .. .+.+|.++... .+-+..-+. +.....|+|+... |.-...+
T Consensus 67 ~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~K~G~~~PGt~ipI~~p~~--l~~~~pd~vivla---w~y~~EI 141 (160)
T PF08484_consen 67 EGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPLKQGKYLPGTHIPIVSPEE--LKERKPDYVIVLA---WNYKDEI 141 (160)
T ss_dssp TT--EEEE---SHHHHHHHHHT--TTTS--EEES-GGGTTEE-TTT--EEEEGGG----SS--SEEEES----GGGHHHH
T ss_pred cCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChhhcCcccCCCCCeECCHHH--HhhCCCCEEEEcC---hhhHHHH
Confidence 56889999999877554322 22 34678877221 111111122 2234568776422 2223577
Q ss_pred HHHHHHccCCCCEEEc
Q 027441 208 LQEAQRVLKPRGEEQI 223 (223)
Q Consensus 208 l~e~~rvLkpgG~lvi 223 (223)
++.+...+..||.|++
T Consensus 142 ~~~~~~~~~~gg~fi~ 157 (160)
T PF08484_consen 142 IEKLREYLERGGKFIV 157 (160)
T ss_dssp HHHTHHHHHTT-EEEE
T ss_pred HHHHHHHHhcCCEEEE
Confidence 7777778889999985
No 307
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=80.32 E-value=6 Score=29.88 Aligned_cols=67 Identities=18% Similarity=0.203 Sum_probs=37.3
Q ss_pred HHHHHhccCCCCeEEEECCcchH-HHHHhc---CceEEEecCCC----CCcEEEccCCCCCCC-CCceeEEEEccc
Q 027441 132 IVKWLKDHSPSLVIADFGCGDAR-LAKSVK---NKVFSFDLVSN----DPSVIACDMSNTPLN-SSSVDVAVFCLS 198 (223)
Q Consensus 132 i~~~l~~~~~~~~ILDiGcG~G~-~a~~la---~~v~gvDis~~----~~~~~~~d~~~lp~~-~~sfD~Vi~~~~ 198 (223)
+..++.......+|++||-|.=. .+..|. -.|+++|+.+. .+.++.-|+.+..+. -...|+|.+..-
T Consensus 4 ~a~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~~a~~g~~~v~DDif~P~l~iY~~a~lIYSiRP 79 (127)
T PF03686_consen 4 FAEYIARLNNYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPRKAPEGVNFVVDDIFNPNLEIYEGADLIYSIRP 79 (127)
T ss_dssp HHHHHHHHS-SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S----STTEE---SSS--HHHHTTEEEEEEES-
T ss_pred HHHHHHHhCCCCcEEEECcCCCHHHHHHHHHcCCcEEEEECcccccccCcceeeecccCCCHHHhcCCcEEEEeCC
Confidence 33444433355699999999754 455555 47999999986 788889999875432 245788886554
No 308
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=79.08 E-value=2.4 Score=38.92 Aligned_cols=83 Identities=14% Similarity=0.148 Sum_probs=48.1
Q ss_pred CCCeEEEECCcchH--HHHHhc-----CceEEEecCCC----------C----CcEEEcc--C--CCCCCC-CCceeEEE
Q 027441 141 PSLVIADFGCGDAR--LAKSVK-----NKVFSFDLVSN----------D----PSVIACD--M--SNTPLN-SSSVDVAV 194 (223)
Q Consensus 141 ~~~~ILDiGcG~G~--~a~~la-----~~v~gvDis~~----------~----~~~~~~d--~--~~lp~~-~~sfD~Vi 194 (223)
....++|+|.|.|. ++..+. ..+.-||.+.. + -..++.. + ..+|.. ...||+|+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 44678889888765 333332 24566777751 1 1111111 1 123433 35599999
Q ss_pred EcccccCC----CHHHHHHHHH-HccCCCCEEEc
Q 027441 195 FCLSLMGI----NFPNYLQEAQ-RVLKPRGEEQI 223 (223)
Q Consensus 195 ~~~~l~~~----d~~~~l~e~~-rvLkpgG~lvi 223 (223)
+.+.++++ ....+..+++ +..++||.++|
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lVi 313 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVI 313 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEE
Confidence 99999988 2234444444 55688888875
No 309
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=78.89 E-value=6.1 Score=34.55 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=46.3
Q ss_pred CCCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcE-------EEccCCCCC--------CCCCceeEEEEccc
Q 027441 140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSV-------IACDMSNTP--------LNSSSVDVAVFCLS 198 (223)
Q Consensus 140 ~~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~-------~~~d~~~lp--------~~~~sfD~Vi~~~~ 198 (223)
.++.+||=+|||. |.++..++ . +|+++|.++.+..+ ...+..... .....+|+|+-+..
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g 254 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVG 254 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCC
Confidence 4678899888764 33444444 3 48888877632211 111111110 11235898885543
Q ss_pred ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 199 LMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 199 l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
. +..+....+.|++||.+++
T Consensus 255 ~-----~~~~~~~~~~~~~~G~iv~ 274 (358)
T TIGR03451 255 R-----PETYKQAFYARDLAGTVVL 274 (358)
T ss_pred C-----HHHHHHHHHHhccCCEEEE
Confidence 1 4567788899999999874
No 310
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=78.85 E-value=18 Score=30.55 Aligned_cols=91 Identities=12% Similarity=0.140 Sum_probs=57.8
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc--C--ceEEEecCC-----------------CCCcEEEccCCC-------
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK--N--KVFSFDLVS-----------------NDPSVIACDMSN------- 182 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la--~--~v~gvDis~-----------------~~~~~~~~d~~~------- 182 (223)
.+.+.+... ...|+.||||-=..+..+. . .++-+|.-. .+..++.+|+..
T Consensus 73 ~i~~~~~~g--~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~ 150 (260)
T TIGR00027 73 FLLAAVAAG--IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALA 150 (260)
T ss_pred HHHHHHhcC--CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHH
Confidence 344444432 3569999999866555554 2 334444332 244567777741
Q ss_pred -CCCCCCceeEEEEcccccCCCHH---HHHHHHHHccCCCCEEEc
Q 027441 183 -TPLNSSSVDVAVFCLSLMGINFP---NYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 183 -lp~~~~sfD~Vi~~~~l~~~d~~---~~l~e~~rvLkpgG~lvi 223 (223)
..|....--++++.+++++++.+ .+|..+.....||+.|++
T Consensus 151 ~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~ 195 (260)
T TIGR00027 151 AAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF 195 (260)
T ss_pred hCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 12333455688899999999544 788888888889998874
No 311
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=77.63 E-value=8.3 Score=32.91 Aligned_cols=92 Identities=13% Similarity=0.154 Sum_probs=46.8
Q ss_pred HHHHHHhcc----CCCCeEEEECCcchH--------HHHHhc--CceEEEecCC---CCCcEEEccCCCCCCCCCceeEE
Q 027441 131 IIVKWLKDH----SPSLVIADFGCGDAR--------LAKSVK--NKVFSFDLVS---NDPSVIACDMSNTPLNSSSVDVA 193 (223)
Q Consensus 131 ~i~~~l~~~----~~~~~ILDiGcG~G~--------~a~~la--~~v~gvDis~---~~~~~~~~d~~~lp~~~~sfD~V 193 (223)
++.++|... +-..+||-+|+|+-. +-++|. ..++-.|+.+ .....+.+|...+.+ +..||+|
T Consensus 47 QLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vSDa~~~~~~Dc~t~~~-~~k~DlI 125 (299)
T PF06460_consen 47 QLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVSDADQSIVGDCRTYMP-PDKFDLI 125 (299)
T ss_dssp HHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-SSSEEEES-GGGEEE-SS-EEEE
T ss_pred HHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhccccCCceeccccccCC-CCcccEE
Confidence 456666442 356899999998522 333443 3456667665 223345778777654 4779999
Q ss_pred EEcccc---cCC--------CHH-HHHHHHHHccCCCCEEEc
Q 027441 194 VFCLSL---MGI--------NFP-NYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 194 i~~~~l---~~~--------d~~-~~l~e~~rvLkpgG~lvi 223 (223)
++-+-= .++ .+- -+..-+..-|+-||.++|
T Consensus 126 iSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvai 167 (299)
T PF06460_consen 126 ISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAI 167 (299)
T ss_dssp EE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEE
T ss_pred EEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEE
Confidence 987651 111 122 334445567888998875
No 312
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=77.62 E-value=9.1 Score=33.17 Aligned_cols=77 Identities=18% Similarity=0.216 Sum_probs=45.2
Q ss_pred CCCCeEEEECCcc-hHHHHHhc----CceEEEecCCCCCcE-------EEccCCCCCCCCCceeEEEEcccccCCCHHHH
Q 027441 140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPSV-------IACDMSNTPLNSSSVDVAVFCLSLMGINFPNY 207 (223)
Q Consensus 140 ~~~~~ILDiGcG~-G~~a~~la----~~v~gvDis~~~~~~-------~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~ 207 (223)
.++.+||=.|+|. |.++..++ .+|++++.++.+..+ .+.+.... ....+|+++.+... ...
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~--~~~~~d~~i~~~~~-----~~~ 236 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDT--PPEPLDAAILFAPA-----GGL 236 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceecccccc--CcccceEEEECCCc-----HHH
Confidence 3678999999864 33333333 468888877632211 11111111 12357876543321 357
Q ss_pred HHHHHHccCCCCEEEc
Q 027441 208 LQEAQRVLKPRGEEQI 223 (223)
Q Consensus 208 l~e~~rvLkpgG~lvi 223 (223)
+....++|++||.+++
T Consensus 237 ~~~~~~~l~~~G~~v~ 252 (329)
T TIGR02822 237 VPPALEALDRGGVLAV 252 (329)
T ss_pred HHHHHHhhCCCcEEEE
Confidence 8889999999999874
No 313
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=77.62 E-value=5.4 Score=37.25 Aligned_cols=82 Identities=17% Similarity=0.154 Sum_probs=53.0
Q ss_pred CCCeEEEECCcchH-HHHHhc----CceEEEecCCC--------CCcEEEccCCC-----------------------CC
Q 027441 141 PSLVIADFGCGDAR-LAKSVK----NKVFSFDLVSN--------DPSVIACDMSN-----------------------TP 184 (223)
Q Consensus 141 ~~~~ILDiGcG~G~-~a~~la----~~v~gvDis~~--------~~~~~~~d~~~-----------------------lp 184 (223)
++.+||=+|||.-. .+..++ ..|+++|.++. ...++..|... ++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~ 242 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFA 242 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHH
Confidence 56899999999754 333333 56889998862 12232333211 11
Q ss_pred CCCCceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEE
Q 027441 185 LNSSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 185 ~~~~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lv 222 (223)
-.-..+|+|+.+..+... .|.-+.+++.+.+|||+.++
T Consensus 243 e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 243 AQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 002468999888866665 34467888999999999875
No 314
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=77.54 E-value=7.7 Score=35.27 Aligned_cols=85 Identities=12% Similarity=-0.022 Sum_probs=49.3
Q ss_pred HHHHHHHhccCCCCeEEEECCcchH-HHHHhc----CceEEEecCCCCCcE------EEccCCCCCCCCCceeEEEEccc
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDAR-LAKSVK----NKVFSFDLVSNDPSV------IACDMSNTPLNSSSVDVAVFCLS 198 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~-~a~~la----~~v~gvDis~~~~~~------~~~d~~~lp~~~~sfD~Vi~~~~ 198 (223)
+.+++.....-++.+|+=+|||+=. ....++ .+|+++|+++.+... ...+.... + ..+|+|+.+..
T Consensus 190 ~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~-v--~~aDVVI~atG 266 (413)
T cd00401 190 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEA-V--KEGDIFVTTTG 266 (413)
T ss_pred HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHH-H--cCCCEEEECCC
Confidence 3444433332368899999999733 222222 579999998743221 11111110 1 34799986543
Q ss_pred ccCCCHHHHHHH-HHHccCCCCEEE
Q 027441 199 LMGINFPNYLQE-AQRVLKPRGEEQ 222 (223)
Q Consensus 199 l~~~d~~~~l~e-~~rvLkpgG~lv 222 (223)
...++.. ..+.+++||+|+
T Consensus 267 -----~~~~i~~~~l~~mk~Ggilv 286 (413)
T cd00401 267 -----NKDIITGEHFEQMKDGAIVC 286 (413)
T ss_pred -----CHHHHHHHHHhcCCCCcEEE
Confidence 1345554 589999999986
No 315
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=76.78 E-value=1.2 Score=38.25 Aligned_cols=113 Identities=14% Similarity=0.153 Sum_probs=58.5
Q ss_pred HHHchhcccccccccccccccCchHHHHHhhcChHHHHHHHHhHHhhhccCCCchHHHHHHHHhccCCCCeEEEECCcch
Q 027441 74 KMRARLSGGHFRMLNEKLYTCTGKEALDYFNENPALFDMYHSGYQEQMSHWPELPVNIIVKWLKDHSPSLVIADFGCGDA 153 (223)
Q Consensus 74 ~~~~~~~~~~fr~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~l~~~~~~~~ILDiGcG~G 153 (223)
...|+.|.++--.++. |..--+....+....|.-...|.+||...-.. ...+ .++..-.+. .+..|+=+|-. -
T Consensus 91 ~~~C~~CeGrgi~l~~--f~dll~kf~eiaK~RP~p~~~yDQgfvTpEtt--v~Rv-~lm~~RGDL-~gK~I~vvGDD-D 163 (354)
T COG1568 91 DYTCECCEGRGISLQA--FKDLLEKFREIAKDRPEPLHQYDQGFVTPETT--VSRV-ALMYSRGDL-EGKEIFVVGDD-D 163 (354)
T ss_pred cccccCcCCccccchh--HHHHHHHHHHHHhcCCCcchhcccccccccce--eeee-eeeccccCc-CCCeEEEEcCc-h
Confidence 3568888877655443 11111222234444444445555555432110 0001 111111222 56779999933 2
Q ss_pred HHHHHhc-----CceEEEecCC---------------CCCcEEEccCCCCCCC---CCceeEEE
Q 027441 154 RLAKSVK-----NKVFSFDLVS---------------NDPSVIACDMSNTPLN---SSSVDVAV 194 (223)
Q Consensus 154 ~~a~~la-----~~v~gvDis~---------------~~~~~~~~d~~~lp~~---~~sfD~Vi 194 (223)
..+.+++ .+|..+||.. .++..++.|+.+. ++ ...||+++
T Consensus 164 Ltsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~p-lpe~~~~kFDvfi 226 (354)
T COG1568 164 LTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNP-LPEDLKRKFDVFI 226 (354)
T ss_pred hhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhccc-ChHHHHhhCCeee
Confidence 3333332 6889999997 4577788887652 33 36799887
No 316
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=75.99 E-value=5.7 Score=29.01 Aligned_cols=31 Identities=35% Similarity=0.594 Sum_probs=25.5
Q ss_pred CceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 188 ~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
..+|+|+-+-.. +..+.....+|+|+|.+++
T Consensus 57 ~~~d~vid~~g~-----~~~~~~~~~~l~~~G~~v~ 87 (130)
T PF00107_consen 57 RGVDVVIDCVGS-----GDTLQEAIKLLRPGGRIVV 87 (130)
T ss_dssp SSEEEEEESSSS-----HHHHHHHHHHEEEEEEEEE
T ss_pred ccceEEEEecCc-----HHHHHHHHHHhccCCEEEE
Confidence 579999866542 6899999999999999874
No 317
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=75.98 E-value=6.9 Score=33.44 Aligned_cols=78 Identities=19% Similarity=0.190 Sum_probs=45.1
Q ss_pred CCCCeEEEECCcc-hHHHHHhc----Cc-eEEEecCCCCCcE-------EEccCCCCC------CCCCceeEEEEccccc
Q 027441 140 SPSLVIADFGCGD-ARLAKSVK----NK-VFSFDLVSNDPSV-------IACDMSNTP------LNSSSVDVAVFCLSLM 200 (223)
Q Consensus 140 ~~~~~ILDiGcG~-G~~a~~la----~~-v~gvDis~~~~~~-------~~~d~~~lp------~~~~sfD~Vi~~~~l~ 200 (223)
.++.+||-+|+|. |..+..++ .+ |++++.++....+ ...+..... .....+|+|+.+..
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~-- 235 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATG-- 235 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCC--
Confidence 3678899998652 44443343 24 6777666522111 111111111 13356899997643
Q ss_pred CCCHHHHHHHHHHccCCCCEEE
Q 027441 201 GINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 201 ~~d~~~~l~e~~rvLkpgG~lv 222 (223)
....+.++.++|+++|.++
T Consensus 236 ---~~~~~~~~~~~l~~~G~~v 254 (334)
T cd08234 236 ---VPKTLEQAIEYARRGGTVL 254 (334)
T ss_pred ---ChHHHHHHHHHHhcCCEEE
Confidence 1467888899999999886
No 318
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=75.52 E-value=1.3 Score=32.58 Aligned_cols=31 Identities=13% Similarity=0.328 Sum_probs=22.1
Q ss_pred EEEcccccCCC-----HHHHHHHHHHccCCCCEEEc
Q 027441 193 AVFCLSLMGIN-----FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 193 Vi~~~~l~~~d-----~~~~l~e~~rvLkpgG~lvi 223 (223)
.++..-..|++ ...++..++..|+|||.|++
T Consensus 7 clSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 7 CLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp EES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE
Confidence 34444445552 23899999999999999986
No 319
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=75.35 E-value=8.4 Score=33.08 Aligned_cols=77 Identities=19% Similarity=0.267 Sum_probs=45.7
Q ss_pred CCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcE-------EEccCC-----CCCCCCCceeEEEEcccccCC
Q 027441 141 PSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSV-------IACDMS-----NTPLNSSSVDVAVFCLSLMGI 202 (223)
Q Consensus 141 ~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~-------~~~d~~-----~lp~~~~sfD~Vi~~~~l~~~ 202 (223)
++.+||-.|||. |..+..++ . .|++++.++....+ ...+.. .+......||+|+.+...
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~--- 241 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGA--- 241 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCC---
Confidence 678888888875 44544444 2 57788766421110 011111 111122348999866442
Q ss_pred CHHHHHHHHHHccCCCCEEE
Q 027441 203 NFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 203 d~~~~l~e~~rvLkpgG~lv 222 (223)
...+..+.+.|+++|.++
T Consensus 242 --~~~~~~~~~~L~~~G~~v 259 (339)
T cd08232 242 --PAALASALRVVRPGGTVV 259 (339)
T ss_pred --HHHHHHHHHHHhcCCEEE
Confidence 346788899999999987
No 320
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=74.55 E-value=7.7 Score=33.75 Aligned_cols=69 Identities=17% Similarity=0.264 Sum_probs=49.1
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC--------------CCCcEEEccCCCCC-----
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS--------------NDPSVIACDMSNTP----- 184 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~--------------~~~~~~~~d~~~lp----- 184 (223)
+..++.|... +++..+|.--|.|..+..+. ++++|+|-.+ .++.++..++.++.
T Consensus 13 ~E~i~~L~~~-~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~ 91 (314)
T COG0275 13 NEVVELLAPK-PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKE 91 (314)
T ss_pred HHHHHhcccC-CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHHh
Confidence 4556666665 77999999999999999886 4699999987 35666766665532
Q ss_pred CCCCceeEEEEcccc
Q 027441 185 LNSSSVDVAVFCLSL 199 (223)
Q Consensus 185 ~~~~sfD~Vi~~~~l 199 (223)
.....+|-|+.-..+
T Consensus 92 ~~i~~vDGiL~DLGV 106 (314)
T COG0275 92 LGIGKVDGILLDLGV 106 (314)
T ss_pred cCCCceeEEEEeccC
Confidence 224567777755443
No 321
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.26 E-value=14 Score=32.64 Aligned_cols=80 Identities=19% Similarity=0.214 Sum_probs=51.1
Q ss_pred cCCCCeEEEECCcchH-HHHHhc-----CceEEEecCCCCCcEE--------EccCCCC-----------CCCCCceeEE
Q 027441 139 HSPSLVIADFGCGDAR-LAKSVK-----NKVFSFDLVSNDPSVI--------ACDMSNT-----------PLNSSSVDVA 193 (223)
Q Consensus 139 ~~~~~~ILDiGcG~G~-~a~~la-----~~v~gvDis~~~~~~~--------~~d~~~l-----------p~~~~sfD~V 193 (223)
...+.+||=+|+|+=. ++...+ .+|+.+|+++.++++. .-+.... -+....+|+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 3578999999999743 333332 6899999998443321 0000000 1223458888
Q ss_pred EEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 194 VFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 194 i~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
+.+..+ ...++.....|++||.+++
T Consensus 247 ~dCsG~-----~~~~~aai~a~r~gGt~vl 271 (354)
T KOG0024|consen 247 FDCSGA-----EVTIRAAIKATRSGGTVVL 271 (354)
T ss_pred EEccCc-----hHHHHHHHHHhccCCEEEE
Confidence 866654 5677888889999999764
No 322
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=72.85 E-value=15 Score=32.21 Aligned_cols=78 Identities=18% Similarity=0.110 Sum_probs=43.6
Q ss_pred CCCeEEEECCcc-hHHHHHhc----CceEEEecCCCCCcEE--------EccCCC---CCCCCCceeEEEEcccccCCCH
Q 027441 141 PSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPSVI--------ACDMSN---TPLNSSSVDVAVFCLSLMGINF 204 (223)
Q Consensus 141 ~~~~ILDiGcG~-G~~a~~la----~~v~gvDis~~~~~~~--------~~d~~~---lp~~~~sfD~Vi~~~~l~~~d~ 204 (223)
++.+||=.|||. |.++..++ .+|++++.++...... ..+..+ +.-..+.+|+|+-+.. -
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g-----~ 257 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS-----A 257 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC-----C
Confidence 567788899864 33444443 4677777765321100 011110 0000124788875443 1
Q ss_pred HHHHHHHHHccCCCCEEEc
Q 027441 205 PNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 205 ~~~l~e~~rvLkpgG~lvi 223 (223)
+..+.++.++|++||.+++
T Consensus 258 ~~~~~~~~~~l~~~G~iv~ 276 (360)
T PLN02586 258 VHALGPLLGLLKVNGKLIT 276 (360)
T ss_pred HHHHHHHHHHhcCCcEEEE
Confidence 4577888999999999873
No 323
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=72.72 E-value=4.9 Score=35.22 Aligned_cols=81 Identities=16% Similarity=0.116 Sum_probs=53.9
Q ss_pred CCeEEEECCcc-hHHHHHhc----CceEEEecCCCC-----------CcEEEccCCCCCCCCCceeEEEEcccccCC-CH
Q 027441 142 SLVIADFGCGD-ARLAKSVK----NKVFSFDLVSND-----------PSVIACDMSNTPLNSSSVDVAVFCLSLMGI-NF 204 (223)
Q Consensus 142 ~~~ILDiGcG~-G~~a~~la----~~v~gvDis~~~-----------~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~-d~ 204 (223)
...|.=||.|. |.-+..++ +.|+-+|++..+ +........++.-.-...|+||..-.+-.- .|
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaP 247 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAP 247 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCc
Confidence 45677788885 44444444 789999999632 223323333332223568999877665555 67
Q ss_pred HHHHHHHHHccCCCCEEE
Q 027441 205 PNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 205 ~~~l~e~~rvLkpgG~lv 222 (223)
..+.+++...++||+.++
T Consensus 248 kLvt~e~vk~MkpGsViv 265 (371)
T COG0686 248 KLVTREMVKQMKPGSVIV 265 (371)
T ss_pred eehhHHHHHhcCCCcEEE
Confidence 788999999999999875
No 324
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=72.34 E-value=4.8 Score=34.21 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=24.4
Q ss_pred CCCCeEEEECCcchHHHHHhcC----------ceEEEecCC
Q 027441 140 SPSLVIADFGCGDARLAKSVKN----------KVFSFDLVS 170 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la~----------~v~gvDis~ 170 (223)
.+...++|+|||.|.++.+++. .++.||-..
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 4667999999999999998871 456777654
No 325
>PRK13699 putative methylase; Provisional
Probab=72.30 E-value=5.7 Score=32.94 Aligned_cols=44 Identities=14% Similarity=0.304 Sum_probs=31.2
Q ss_pred hHHHHHHHHhc-cCCCCeEEEECCcchHHHHHhc---CceEEEecCCC
Q 027441 128 PVNIIVKWLKD-HSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN 171 (223)
Q Consensus 128 ~~~~i~~~l~~-~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~ 171 (223)
|++.+...+.. ..++..|||-=||+|..+.... .+++|+|+++.
T Consensus 149 P~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~ 196 (227)
T PRK13699 149 PVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQ 196 (227)
T ss_pred cHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHH
Confidence 34444444432 2478899999999998766654 68999999973
No 326
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=72.29 E-value=15 Score=28.85 Aligned_cols=39 Identities=28% Similarity=0.569 Sum_probs=30.0
Q ss_pred CCCCceeEEEEcccccC-----C--C-------HHHHHHHHHHccCCCCEEEc
Q 027441 185 LNSSSVDVAVFCLSLMG-----I--N-------FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 185 ~~~~sfD~Vi~~~~l~~-----~--d-------~~~~l~e~~rvLkpgG~lvi 223 (223)
+....||.|+..+--.. . + ...++..+.++|+++|.+.|
T Consensus 71 ~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhV 123 (166)
T PF10354_consen 71 LKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHV 123 (166)
T ss_pred ccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 45688999998876444 1 1 23899999999999999875
No 327
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=72.19 E-value=1.5 Score=40.52 Aligned_cols=81 Identities=16% Similarity=0.082 Sum_probs=53.2
Q ss_pred CCCCeEEEECCcchHHHHHhc------CceEEEecCCCCCc----------------EEEccCCC----CCCCCCceeEE
Q 027441 140 SPSLVIADFGCGDARLAKSVK------NKVFSFDLVSNDPS----------------VIACDMSN----TPLNSSSVDVA 193 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~~~~~----------------~~~~d~~~----lp~~~~sfD~V 193 (223)
.+..+|||.=|++|.-+...+ ..|++.|.++..+. ....|+.. .+.....||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 467899999999998776665 46788888872222 11223211 23335677877
Q ss_pred EEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 194 VFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 194 i~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
-.-- +--+..||+.+.+.++.||+|++
T Consensus 188 DLDP---yGs~s~FLDsAvqav~~gGLL~v 214 (525)
T KOG1253|consen 188 DLDP---YGSPSPFLDSAVQAVRDGGLLCV 214 (525)
T ss_pred ecCC---CCCccHHHHHHHHHhhcCCEEEE
Confidence 5211 01345999999999999999975
No 328
>PRK11524 putative methyltransferase; Provisional
Probab=71.96 E-value=6.9 Score=33.45 Aligned_cols=43 Identities=14% Similarity=0.211 Sum_probs=31.0
Q ss_pred HHHHHHHHhcc-CCCCeEEEECCcchHHHHHhc---CceEEEecCCC
Q 027441 129 VNIIVKWLKDH-SPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN 171 (223)
Q Consensus 129 ~~~i~~~l~~~-~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~ 171 (223)
+..+...+... .++..|||-=||+|..+.+.. .+.+|+|+++.
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~ 241 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSE 241 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHH
Confidence 43444444332 478999999999998766554 68999999984
No 329
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=71.46 E-value=10 Score=33.30 Aligned_cols=79 Identities=19% Similarity=0.191 Sum_probs=45.6
Q ss_pred CCCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcE-------EEccCCCCC-------CCCCceeEEEEcccc
Q 027441 140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSV-------IACDMSNTP-------LNSSSVDVAVFCLSL 199 (223)
Q Consensus 140 ~~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~-------~~~d~~~lp-------~~~~sfD~Vi~~~~l 199 (223)
.++.+||=+|+|. |.++..++ . .|+++|.++.+..+ ...+..... +..+.+|+|+-+..
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G- 268 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAG- 268 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCC-
Confidence 3567788899864 33444343 3 68889887632211 011111100 11235898885543
Q ss_pred cCCCHHHHHHHHHHccCCCCEEEc
Q 027441 200 MGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 200 ~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
-...+..+.++|+++|.+++
T Consensus 269 ----~~~~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 269 ----SVPALETAYEITRRGGTTVT 288 (371)
T ss_pred ----ChHHHHHHHHHHhcCCEEEE
Confidence 14577888899999999863
No 330
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=70.42 E-value=28 Score=29.58 Aligned_cols=78 Identities=14% Similarity=0.091 Sum_probs=45.0
Q ss_pred CCCCeEEEECCc-chHHHHHhc----CceEEEecCCCCCc--------EEEccCC-CCC-CCCCceeEEEEcccccCCCH
Q 027441 140 SPSLVIADFGCG-DARLAKSVK----NKVFSFDLVSNDPS--------VIACDMS-NTP-LNSSSVDVAVFCLSLMGINF 204 (223)
Q Consensus 140 ~~~~~ILDiGcG-~G~~a~~la----~~v~gvDis~~~~~--------~~~~d~~-~lp-~~~~sfD~Vi~~~~l~~~d~ 204 (223)
.++..||-+||| .|..+..++ .+|++++.+..... .+..+.. ... -....+|+|+.+..-
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~----- 235 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVS----- 235 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCc-----
Confidence 366788889886 454444444 36777776652211 1111110 000 012458988866331
Q ss_pred HHHHHHHHHccCCCCEEE
Q 027441 205 PNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 205 ~~~l~e~~rvLkpgG~lv 222 (223)
...+.++.+.|+++|.++
T Consensus 236 ~~~~~~~~~~l~~~G~~i 253 (330)
T cd08245 236 GAAAEAALGGLRRGGRIV 253 (330)
T ss_pred HHHHHHHHHhcccCCEEE
Confidence 457788899999999886
No 331
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=70.42 E-value=8 Score=32.56 Aligned_cols=78 Identities=17% Similarity=0.150 Sum_probs=45.1
Q ss_pred CCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcE-------EEccCCCCC-----C-CCCceeEEEEcccccC
Q 027441 141 PSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSV-------IACDMSNTP-----L-NSSSVDVAVFCLSLMG 201 (223)
Q Consensus 141 ~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~-------~~~d~~~lp-----~-~~~sfD~Vi~~~~l~~ 201 (223)
++.+||=+|+|+ |.++..++ . .|+++|.++.+..+ ...+..... + ....+|+|+-+..
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G--- 196 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSG--- 196 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCC---
Confidence 677888888864 33333333 2 38888877532211 011111100 1 1235888886543
Q ss_pred CCHHHHHHHHHHccCCCCEEEc
Q 027441 202 INFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 202 ~d~~~~l~e~~rvLkpgG~lvi 223 (223)
-+..+..+.++|+|+|.+++
T Consensus 197 --~~~~~~~~~~~l~~~G~iv~ 216 (280)
T TIGR03366 197 --ATAAVRACLESLDVGGTAVL 216 (280)
T ss_pred --ChHHHHHHHHHhcCCCEEEE
Confidence 15678888999999999873
No 332
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=69.86 E-value=31 Score=25.77 Aligned_cols=57 Identities=16% Similarity=0.178 Sum_probs=38.4
Q ss_pred CCCeEEEECCcchH-HHHHhc---CceEEEecCCC----CCcEEEccCCCCCCC-CCceeEEEEcc
Q 027441 141 PSLVIADFGCGDAR-LAKSVK---NKVFSFDLVSN----DPSVIACDMSNTPLN-SSSVDVAVFCL 197 (223)
Q Consensus 141 ~~~~ILDiGcG~G~-~a~~la---~~v~gvDis~~----~~~~~~~d~~~lp~~-~~sfD~Vi~~~ 197 (223)
..++|.+||-|-=. .+..|+ -.|+++|+.+. .+.+++-|+.+..+. -...|+|.+..
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~~a~~g~~~v~DDitnP~~~iY~~A~lIYSiR 78 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGFDVLATDINEKTAPEGLRFVVDDITNPNISIYEGADLIYSIR 78 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCCcEEEEecccccCcccceEEEccCCCccHHHhhCccceeecC
Confidence 34689999988643 555666 36899999984 445888888775532 23457776543
No 333
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=69.21 E-value=5.9 Score=33.18 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=21.7
Q ss_pred CCeEEEECCcchHHHHHhc-------------CceEEEecCC
Q 027441 142 SLVIADFGCGDARLAKSVK-------------NKVFSFDLVS 170 (223)
Q Consensus 142 ~~~ILDiGcG~G~~a~~la-------------~~v~gvDis~ 170 (223)
...|+|+|+|+|.++..+. .+++-+++|+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp 60 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISP 60 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCH
Confidence 3799999999999887664 2578899997
No 334
>PRK13699 putative methylase; Provisional
Probab=68.70 E-value=3.9 Score=33.94 Aligned_cols=19 Identities=26% Similarity=0.071 Sum_probs=16.9
Q ss_pred HHHHHHHHHccCCCCEEEc
Q 027441 205 PNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 205 ~~~l~e~~rvLkpgG~lvi 223 (223)
..++.|++|+|||||.+++
T Consensus 52 ~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVS 70 (227)
T ss_pred HHHHHHHHHHcCCCCEEEE
Confidence 4889999999999999874
No 335
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=68.51 E-value=4.7 Score=36.16 Aligned_cols=80 Identities=15% Similarity=0.032 Sum_probs=49.9
Q ss_pred CCCeEEEECCcchHHHHHhc------CceEEEecCCC-----------------CCcEEEccCCCCC-CCCCceeEEEEc
Q 027441 141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVSN-----------------DPSVIACDMSNTP-LNSSSVDVAVFC 196 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la------~~v~gvDis~~-----------------~~~~~~~d~~~lp-~~~~sfD~Vi~~ 196 (223)
...+|||.=+|+|.-+...+ ..|++-|+++. .+.+...|+..+= .....||+|=.-
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 45789999999998666554 47899999972 2334444543321 245678887411
Q ss_pred ccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 197 LSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 197 ~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
- +-.+..+|..+.+.++.||+|.|
T Consensus 129 P---fGSp~pfldsA~~~v~~gGll~v 152 (377)
T PF02005_consen 129 P---FGSPAPFLDSALQAVKDGGLLCV 152 (377)
T ss_dssp ----SS--HHHHHHHHHHEEEEEEEEE
T ss_pred C---CCCccHhHHHHHHHhhcCCEEEE
Confidence 1 01356999999999999999975
No 336
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=67.78 E-value=17 Score=32.51 Aligned_cols=92 Identities=13% Similarity=0.138 Sum_probs=55.3
Q ss_pred HHHHHHHhccCCCCeEEEECCcchH----HHHHhcC--------ceEEEec----CC----------------CCCc--E
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDAR----LAKSVKN--------KVFSFDL----VS----------------NDPS--V 175 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~----~a~~la~--------~v~gvDi----s~----------------~~~~--~ 175 (223)
..|++.+... ....|+|+|.|.|. +...|+. +++|++. +. -++. |
T Consensus 100 qaIleA~~g~-~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef 178 (374)
T PF03514_consen 100 QAILEAFEGE-RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEF 178 (374)
T ss_pred HHHHHHhccC-cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEE
Confidence 4566666655 67899999999996 3334441 6899998 32 1222 2
Q ss_pred EE---ccCCC-----CCCCCCceeEEEEcccccCCC--------HHHHHHHHHHccCCCCEEE
Q 027441 176 IA---CDMSN-----TPLNSSSVDVAVFCLSLMGIN--------FPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 176 ~~---~d~~~-----lp~~~~sfD~Vi~~~~l~~~d--------~~~~l~e~~rvLkpgG~lv 222 (223)
.. .+.+. +.+.++.+=+|.|.+.+||+. +...+-...|-|+|.-.++
T Consensus 179 ~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~ 241 (374)
T PF03514_consen 179 HPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVL 241 (374)
T ss_pred EecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEE
Confidence 22 12222 223445555666777888872 2344556777889886554
No 337
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=66.92 E-value=30 Score=28.57 Aligned_cols=78 Identities=21% Similarity=0.239 Sum_probs=44.7
Q ss_pred CCCCeEEEECCcc-hHHHHHhc----Cc-eEEEecCCCCCcEE--------EccCCCCCCCCCceeEEEEcccccCCCHH
Q 027441 140 SPSLVIADFGCGD-ARLAKSVK----NK-VFSFDLVSNDPSVI--------ACDMSNTPLNSSSVDVAVFCLSLMGINFP 205 (223)
Q Consensus 140 ~~~~~ILDiGcG~-G~~a~~la----~~-v~gvDis~~~~~~~--------~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~ 205 (223)
.++.+||=.|||. |..+..++ .. |++++.++....+. .............+|+|+.+... .
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~-----~ 170 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGS-----P 170 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCC-----h
Confidence 3677888888865 44444443 34 88887665222110 00000001123458988865321 4
Q ss_pred HHHHHHHHccCCCCEEE
Q 027441 206 NYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 206 ~~l~e~~rvLkpgG~lv 222 (223)
..+.+..+.|+++|.++
T Consensus 171 ~~~~~~~~~l~~~g~~~ 187 (277)
T cd08255 171 SALETALRLLRDRGRVV 187 (277)
T ss_pred HHHHHHHHHhcCCcEEE
Confidence 57788899999999886
No 338
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=66.84 E-value=9 Score=34.43 Aligned_cols=45 Identities=11% Similarity=0.201 Sum_probs=32.8
Q ss_pred CCCchHHHHHHHHhccCCCCeEEEECCcchHHHHHhc---CceEEEecCCC
Q 027441 124 WPELPVNIIVKWLKDHSPSLVIADFGCGDARLAKSVK---NKVFSFDLVSN 171 (223)
Q Consensus 124 ~p~~~~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~~ 171 (223)
|.... .-++.|... ++.+||-|.+|......+|. .+|++||+++.
T Consensus 21 WEDp~--vD~~aL~i~-~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~ 68 (380)
T PF11899_consen 21 WEDPR--VDMEALNIG-PDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPA 68 (380)
T ss_pred cCCcH--HHHHHhCCC-CCCeEEEEccCCchHHHHHhcCCceEEEEeCCHH
Confidence 54443 334555554 88999999988877777765 68999999983
No 339
>PLN02740 Alcohol dehydrogenase-like
Probab=66.41 E-value=21 Score=31.61 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=45.8
Q ss_pred CCCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcE-------EEccCCC----C-----CCCCCceeEEEEcc
Q 027441 140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSV-------IACDMSN----T-----PLNSSSVDVAVFCL 197 (223)
Q Consensus 140 ~~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~-------~~~d~~~----l-----p~~~~sfD~Vi~~~ 197 (223)
.++.+||=+|||. |.++..++ . +|+++|.++....+ ...+... + .+..+.+|+|+-+.
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~ 276 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECA 276 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECC
Confidence 4678899999864 33333333 3 68899887632211 0111111 0 01122589888654
Q ss_pred cccCCCHHHHHHHHHHccCCC-CEEEc
Q 027441 198 SLMGINFPNYLQEAQRVLKPR-GEEQI 223 (223)
Q Consensus 198 ~l~~~d~~~~l~e~~rvLkpg-G~lvi 223 (223)
. -+..+.....++++| |.+++
T Consensus 277 G-----~~~~~~~a~~~~~~g~G~~v~ 298 (381)
T PLN02740 277 G-----NVEVLREAFLSTHDGWGLTVL 298 (381)
T ss_pred C-----ChHHHHHHHHhhhcCCCEEEE
Confidence 4 146778888899997 88763
No 340
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=66.06 E-value=8.6 Score=34.34 Aligned_cols=78 Identities=15% Similarity=0.075 Sum_probs=49.8
Q ss_pred CCeEEEECCcchHHHHHhc-----CceEEEecCCCCCcEE---------------EccCCCCCCC-CCceeEEEEccccc
Q 027441 142 SLVIADFGCGDARLAKSVK-----NKVFSFDLVSNDPSVI---------------ACDMSNTPLN-SSSVDVAVFCLSLM 200 (223)
Q Consensus 142 ~~~ILDiGcG~G~~a~~la-----~~v~gvDis~~~~~~~---------------~~d~~~lp~~-~~sfD~Vi~~~~l~ 200 (223)
..+|||-=||+|.-+..++ .+|+.-|+++..+..+ ..|+..+=.. ...||+|= +.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~ID----iD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVID----ID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEe----cC
Confidence 6889999999999888776 2688899998322222 2222111110 13344442 11
Q ss_pred CC-CHHHHHHHHHHccCCCCEEEc
Q 027441 201 GI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 201 ~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
-+ .|..|+..+.+.++.||+|.|
T Consensus 129 PFGSPaPFlDaA~~s~~~~G~l~v 152 (380)
T COG1867 129 PFGSPAPFLDAALRSVRRGGLLCV 152 (380)
T ss_pred CCCCCchHHHHHHHHhhcCCEEEE
Confidence 11 345899999999999999865
No 341
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=65.44 E-value=54 Score=27.95 Aligned_cols=78 Identities=9% Similarity=-0.001 Sum_probs=45.4
Q ss_pred CCCCeEEEECCc--chHHHHHhc----CceEEEecCCCCC--------cEEE-ccC-CCC-----CCCCCceeEEEEccc
Q 027441 140 SPSLVIADFGCG--DARLAKSVK----NKVFSFDLVSNDP--------SVIA-CDM-SNT-----PLNSSSVDVAVFCLS 198 (223)
Q Consensus 140 ~~~~~ILDiGcG--~G~~a~~la----~~v~gvDis~~~~--------~~~~-~d~-~~l-----p~~~~sfD~Vi~~~~ 198 (223)
.++.+||=.|++ .|..+..++ .+|++++.++... +.+. .+- ..+ ......+|+|+-+..
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G 216 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVG 216 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCC
Confidence 467889888853 455555454 4677777665221 1111 110 010 011246899986554
Q ss_pred ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 199 LMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 199 l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
...+..+.++|+++|.+++
T Consensus 217 ------~~~~~~~~~~l~~~G~iv~ 235 (325)
T TIGR02825 217 ------GEFSNTVIGQMKKFGRIAI 235 (325)
T ss_pred ------HHHHHHHHHHhCcCcEEEE
Confidence 3456888999999999873
No 342
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=65.06 E-value=19 Score=30.95 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=44.2
Q ss_pred CCCeEEEECCcc-hHHHHHhc----Cc-eEEEecCCCCCcE-------EEccCCCC------CC-CCCceeEEEEccccc
Q 027441 141 PSLVIADFGCGD-ARLAKSVK----NK-VFSFDLVSNDPSV-------IACDMSNT------PL-NSSSVDVAVFCLSLM 200 (223)
Q Consensus 141 ~~~~ILDiGcG~-G~~a~~la----~~-v~gvDis~~~~~~-------~~~d~~~l------p~-~~~sfD~Vi~~~~l~ 200 (223)
++.+||=+|+|. |.++..++ .+ |++++.++.+..+ ...+.... .+ ....||+|+-+..-
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~- 241 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGN- 241 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCC-
Confidence 577888888763 23333333 35 8888876522111 01111110 01 12368998855431
Q ss_pred CCCHHHHHHHHHHccCCCCEEEc
Q 027441 201 GINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 201 ~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
...+....+.|+++|.+++
T Consensus 242 ----~~~~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 242 ----TAARRLALEAVRPWGRLVL 260 (339)
T ss_pred ----HHHHHHHHHHhhcCCEEEE
Confidence 4566778899999999873
No 343
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=63.41 E-value=23 Score=30.59 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=43.4
Q ss_pred CCCCeEEEECCcc-hHHHHHhc----Cc-eEEEecCCCCCcE-------EEccCCCCC-------CCCCcee-EEEEccc
Q 027441 140 SPSLVIADFGCGD-ARLAKSVK----NK-VFSFDLVSNDPSV-------IACDMSNTP-------LNSSSVD-VAVFCLS 198 (223)
Q Consensus 140 ~~~~~ILDiGcG~-G~~a~~la----~~-v~gvDis~~~~~~-------~~~d~~~lp-------~~~~sfD-~Vi~~~~ 198 (223)
.++.+||=+|||+ |.++..++ .. |++++.++....+ ...+..... .....+| +|+-+-.
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G 238 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAG 238 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECCC
Confidence 3567888888865 33333333 33 6788776522111 011111110 1123466 6553332
Q ss_pred ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 199 LMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 199 l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
-...+.+..++|++||.+++
T Consensus 239 -----~~~~~~~~~~~l~~~G~iv~ 258 (347)
T PRK10309 239 -----VPQTVELAIEIAGPRAQLAL 258 (347)
T ss_pred -----CHHHHHHHHHHhhcCCEEEE
Confidence 15688889999999999874
No 344
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=62.90 E-value=57 Score=28.44 Aligned_cols=78 Identities=12% Similarity=0.056 Sum_probs=47.0
Q ss_pred CCCCeEEEECCc--chHHHHHhc----CceEEEecCCCCCcEE--------EccCC---CC-----CCCCCceeEEEEcc
Q 027441 140 SPSLVIADFGCG--DARLAKSVK----NKVFSFDLVSNDPSVI--------ACDMS---NT-----PLNSSSVDVAVFCL 197 (223)
Q Consensus 140 ~~~~~ILDiGcG--~G~~a~~la----~~v~gvDis~~~~~~~--------~~d~~---~l-----p~~~~sfD~Vi~~~ 197 (223)
.++.+||=.|++ .|.++..++ .+|++++.++....+. +.|.. .+ .+....+|+|+.+.
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~v 236 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNV 236 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECC
Confidence 467889999983 455555554 4688887665221110 11111 11 01123589988655
Q ss_pred cccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 198 SLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 198 ~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
. ...+..+.++|++||.+++
T Consensus 237 G------~~~~~~~~~~l~~~G~iv~ 256 (348)
T PLN03154 237 G------GDMLDAALLNMKIHGRIAV 256 (348)
T ss_pred C------HHHHHHHHHHhccCCEEEE
Confidence 4 3577888999999999873
No 345
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=61.89 E-value=63 Score=27.30 Aligned_cols=77 Identities=8% Similarity=0.054 Sum_probs=45.0
Q ss_pred CCCCeEEEECCc--chHHHHHhc----CceEEEecCCCCCcE-------EEccCCCCC-------CCCCceeEEEEcccc
Q 027441 140 SPSLVIADFGCG--DARLAKSVK----NKVFSFDLVSNDPSV-------IACDMSNTP-------LNSSSVDVAVFCLSL 199 (223)
Q Consensus 140 ~~~~~ILDiGcG--~G~~a~~la----~~v~gvDis~~~~~~-------~~~d~~~lp-------~~~~sfD~Vi~~~~l 199 (223)
.++.+||=.|++ .|..+..++ .+|++++-++....+ ...|..... +....+|+|+.+..
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g- 220 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVG- 220 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCC-
Confidence 467888888843 344544444 467777765421111 011111111 11245899986554
Q ss_pred cCCCHHHHHHHHHHccCCCCEEE
Q 027441 200 MGINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 200 ~~~d~~~~l~e~~rvLkpgG~lv 222 (223)
...+..+.+.|+++|.++
T Consensus 221 -----~~~~~~~~~~l~~~G~iv 238 (329)
T cd08294 221 -----GEFSSTVLSHMNDFGRVA 238 (329)
T ss_pred -----HHHHHHHHHhhccCCEEE
Confidence 356788999999999986
No 346
>PLN02827 Alcohol dehydrogenase-like
Probab=61.72 E-value=12 Score=33.19 Aligned_cols=79 Identities=13% Similarity=0.154 Sum_probs=44.6
Q ss_pred CCCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcE-------EEccCCCC--C-------CCCCceeEEEEcc
Q 027441 140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSV-------IACDMSNT--P-------LNSSSVDVAVFCL 197 (223)
Q Consensus 140 ~~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~-------~~~d~~~l--p-------~~~~sfD~Vi~~~ 197 (223)
.++.+||=+|+|+ |.++..++ . .|+++|.++....+ ...+.... + +..+.+|+|+-+-
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~ 271 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECV 271 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEECC
Confidence 4678899998764 33333333 2 57788876522111 01111110 0 1122588888554
Q ss_pred cccCCCHHHHHHHHHHccCCC-CEEEc
Q 027441 198 SLMGINFPNYLQEAQRVLKPR-GEEQI 223 (223)
Q Consensus 198 ~l~~~d~~~~l~e~~rvLkpg-G~lvi 223 (223)
. -...+....++|++| |.+++
T Consensus 272 G-----~~~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 272 G-----DTGIATTALQSCSDGWGLTVT 293 (378)
T ss_pred C-----ChHHHHHHHHhhccCCCEEEE
Confidence 4 145678888999998 99863
No 347
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=60.96 E-value=14 Score=31.65 Aligned_cols=78 Identities=17% Similarity=0.259 Sum_probs=44.0
Q ss_pred CCCCeEEEECCcc-hHHHHHhc-----CceEEEecCCCCCcE-------EEccCCCCC--------CCCCceeEEEEccc
Q 027441 140 SPSLVIADFGCGD-ARLAKSVK-----NKVFSFDLVSNDPSV-------IACDMSNTP--------LNSSSVDVAVFCLS 198 (223)
Q Consensus 140 ~~~~~ILDiGcG~-G~~a~~la-----~~v~gvDis~~~~~~-------~~~d~~~lp--------~~~~sfD~Vi~~~~ 198 (223)
.++.+||-.|+|. |..+..++ ..+++++.++....+ ...+..+.. .....+|+|+.+..
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~~g 245 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEAVG 245 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEccC
Confidence 3667888877653 44444443 257777655421110 111111111 12356899986543
Q ss_pred ccCCCHHHHHHHHHHccCCCCEEE
Q 027441 199 LMGINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 199 l~~~d~~~~l~e~~rvLkpgG~lv 222 (223)
. ...+.++.+.|+++|.++
T Consensus 246 ~-----~~~~~~~~~~l~~~G~~v 264 (347)
T cd05278 246 F-----EETFEQAVKVVRPGGTIA 264 (347)
T ss_pred C-----HHHHHHHHHHhhcCCEEE
Confidence 1 257888899999999886
No 348
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=60.82 E-value=21 Score=30.08 Aligned_cols=61 Identities=11% Similarity=0.107 Sum_probs=35.3
Q ss_pred CCCeEEEECCcchHHHHHhcC-----ceEEEecCC-----------CC------CcEEE-ccC----CCCCCCCCceeEE
Q 027441 141 PSLVIADFGCGDARLAKSVKN-----KVFSFDLVS-----------ND------PSVIA-CDM----SNTPLNSSSVDVA 193 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la~-----~v~gvDis~-----------~~------~~~~~-~d~----~~lp~~~~sfD~V 193 (223)
+..++||||.|.--+=..+-. +.+|.|+++ .| +.... -|- ...--.++.||++
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~t 157 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDAT 157 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeE
Confidence 567899999987543222221 567778776 11 11111 111 1111236789999
Q ss_pred EEcccccC
Q 027441 194 VFCLSLMG 201 (223)
Q Consensus 194 i~~~~l~~ 201 (223)
+|.--+|.
T Consensus 158 lCNPPFh~ 165 (292)
T COG3129 158 LCNPPFHD 165 (292)
T ss_pred ecCCCcch
Confidence 99998884
No 349
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=60.47 E-value=12 Score=32.56 Aligned_cols=79 Identities=10% Similarity=0.148 Sum_probs=43.4
Q ss_pred CCCCeEEEECCcc-hHHHHHhc----CceEEEecCCCCCcEE-------EccCCCCC----------C-CCCcee----E
Q 027441 140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPSVI-------ACDMSNTP----------L-NSSSVD----V 192 (223)
Q Consensus 140 ~~~~~ILDiGcG~-G~~a~~la----~~v~gvDis~~~~~~~-------~~d~~~lp----------~-~~~sfD----~ 192 (223)
.++.+||=+|||. |..+..++ .+|+++|.++.+..+. ..+....+ + ....+| +
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~ 244 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWK 244 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCE
Confidence 3678999999965 44444444 4688888776222110 11111100 0 011243 4
Q ss_pred EEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 193 AVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 193 Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
|+-+.. -...+..+.++|++||.+++
T Consensus 245 v~d~~g-----~~~~~~~~~~~l~~~G~iv~ 270 (349)
T TIGR03201 245 IFECSG-----SKPGQESALSLLSHGGTLVV 270 (349)
T ss_pred EEECCC-----ChHHHHHHHHHHhcCCeEEE
Confidence 542222 15677788899999999874
No 350
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=59.65 E-value=37 Score=28.57 Aligned_cols=79 Identities=18% Similarity=0.181 Sum_probs=40.8
Q ss_pred CCCeEEEECCcchH-HHHHhc---CceEEEecCC--------------CCCcEEEccCCC-CCCC-CCceeEEEEccccc
Q 027441 141 PSLVIADFGCGDAR-LAKSVK---NKVFSFDLVS--------------NDPSVIACDMSN-TPLN-SSSVDVAVFCLSLM 200 (223)
Q Consensus 141 ~~~~ILDiGcG~G~-~a~~la---~~v~gvDis~--------------~~~~~~~~d~~~-lp~~-~~sfD~Vi~~~~l~ 200 (223)
.+.+||-||=+.-. ++..+. .+|+.+|+.. -.+.....|+.+ +|-. -+.||++++--...
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT 123 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPYT 123 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---SS
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCCC
Confidence 57899999966543 333332 6899999997 246667777754 4421 47899998543211
Q ss_pred CCCHHHHHHHHHHccCCCC
Q 027441 201 GINFPNYLQEAQRVLKPRG 219 (223)
Q Consensus 201 ~~d~~~~l~e~~rvLkpgG 219 (223)
--....|+......|+..|
T Consensus 124 ~~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 124 PEGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp HHHHHHHHHHHHHTB-STT
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 1022378888888888755
No 351
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=59.55 E-value=9.7 Score=28.56 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=28.9
Q ss_pred cEEEccCCC-CCCCCCceeEEEEcccccCCCH----HHHHHHHHHccCCCCEEE
Q 027441 174 SVIACDMSN-TPLNSSSVDVAVFCLSLMGINF----PNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 174 ~~~~~d~~~-lp~~~~sfD~Vi~~~~l~~~d~----~~~l~e~~rvLkpgG~lv 222 (223)
.+..+|+.. ++--+..||+|+.-..--..++ ..++..+.++++|||+|.
T Consensus 34 ~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~ 87 (124)
T PF05430_consen 34 TLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLA 87 (124)
T ss_dssp EEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEE
T ss_pred EEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEE
Confidence 344555532 2211266888876653333344 389999999999999985
No 352
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=59.22 E-value=26 Score=36.21 Aligned_cols=80 Identities=18% Similarity=0.133 Sum_probs=48.5
Q ss_pred CCCeEEEECCcchH-HHHHhc--CceEEEecCC---------CCCcEEEccCCCCC-CCCCceeEEEEccccc------C
Q 027441 141 PSLVIADFGCGDAR-LAKSVK--NKVFSFDLVS---------NDPSVIACDMSNTP-LNSSSVDVAVFCLSLM------G 201 (223)
Q Consensus 141 ~~~~ILDiGcG~G~-~a~~la--~~v~gvDis~---------~~~~~~~~d~~~lp-~~~~sfD~Vi~~~~l~------~ 201 (223)
....+||+|.|+-. +...+. ..|+-+|+=+ ....|++.|..... .....+|++.|.++|- +
T Consensus 822 ~~~~~lDLGTGPE~RiLsliP~~~pvtmvD~RP~ae~m~~w~t~T~y~~~DYl~~~~~~~~~~D~vtailSLGAAaA~a~ 901 (1289)
T PF06016_consen 822 DPDHWLDLGTGPECRILSLIPPDTPVTMVDTRPFAEPMNCWNTQTQYIQADYLSDAWWNGTPFDAVTAILSLGAAAASAN 901 (1289)
T ss_dssp CC-CEEEET--TT-CHHHCS-TTSEEEEEESS--SSSCCCCSTTEEEEES-TTSCCGGCC---SEEEECTCHHHHHHHCT
T ss_pred CcceEEEccCCccceeeeccCCCCceEEEecCCcccccchhhhcceeeeeccccceeEecCCCCEEEEEeeehhhhhcCC
Confidence 35789999999864 333333 4688899876 34467888875543 2346799999998874 5
Q ss_pred CCHHHHHHHHHHccCCCCE
Q 027441 202 INFPNYLQEAQRVLKPRGE 220 (223)
Q Consensus 202 ~d~~~~l~e~~rvLkpgG~ 220 (223)
++....++.+.+.+++.|.
T Consensus 902 ~tl~~~l~~~l~~~~~~~~ 920 (1289)
T PF06016_consen 902 VTLDAGLQQFLSQCVQANV 920 (1289)
T ss_dssp --HHHHHHHHHHHHHCTT-
T ss_pred CcHHHHHHHHHHHHHhCCc
Confidence 5778888888888887764
No 353
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=59.11 E-value=67 Score=25.33 Aligned_cols=79 Identities=11% Similarity=0.149 Sum_probs=46.1
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc--C-ceEEEecCC-------------------CCCcEEEccCCCC----
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK--N-KVFSFDLVS-------------------NDPSVIACDMSNT---- 183 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la--~-~v~gvDis~-------------------~~~~~~~~d~~~l---- 183 (223)
+.+.+.+...+....|+.||||-=.....+. . .+.-+|+.- .+..++.+|+.+.
T Consensus 67 ~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~ 146 (183)
T PF04072_consen 67 DAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWID 146 (183)
T ss_dssp HHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHH
T ss_pred HHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHH
Confidence 3445555444233489999999876666555 2 454444443 2356888898752
Q ss_pred -----CCCCCceeEEEEcccccCCCHHHHH
Q 027441 184 -----PLNSSSVDVAVFCLSLMGINFPNYL 208 (223)
Q Consensus 184 -----p~~~~sfD~Vi~~~~l~~~d~~~~l 208 (223)
.+....--++++.++++++++..+.
T Consensus 147 ~L~~~g~~~~~ptl~i~Egvl~Yl~~~~~~ 176 (183)
T PF04072_consen 147 ALPKAGFDPDRPTLFIAEGVLMYLSPEQVD 176 (183)
T ss_dssp HHHHCTT-TTSEEEEEEESSGGGS-HHHHH
T ss_pred HHHHhCCCCCCCeEEEEcchhhcCCHHHHH
Confidence 2445677899999999999766443
No 354
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=59.08 E-value=31 Score=29.58 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=45.4
Q ss_pred CCCCeEEEECCcc-hHHHHHhc----CceEEEecCCCCCcE-------EEccCCCCC--------CCCCceeEEEEcccc
Q 027441 140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPSV-------IACDMSNTP--------LNSSSVDVAVFCLSL 199 (223)
Q Consensus 140 ~~~~~ILDiGcG~-G~~a~~la----~~v~gvDis~~~~~~-------~~~d~~~lp--------~~~~sfD~Vi~~~~l 199 (223)
.++..||-.|+|. |..+..++ .+|+++..++....+ ...+....+ .+...+|+|+.+..-
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g~ 237 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDATGN 237 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECCCC
Confidence 4677899998764 44554444 467777554422111 011111111 123458999876431
Q ss_pred cCCCHHHHHHHHHHccCCCCEEE
Q 027441 200 MGINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 200 ~~~d~~~~l~e~~rvLkpgG~lv 222 (223)
...+.++.+.|+++|.++
T Consensus 238 -----~~~~~~~~~~l~~~G~~i 255 (337)
T cd08261 238 -----PASMEEAVELVAHGGRVV 255 (337)
T ss_pred -----HHHHHHHHHHHhcCCEEE
Confidence 457788999999999886
No 355
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=58.95 E-value=47 Score=28.57 Aligned_cols=78 Identities=21% Similarity=0.295 Sum_probs=44.3
Q ss_pred CCCCeEEEECCcc-hHHHHHhc----Cc-eEEEecCCCCCcE-------EEccCCCC-----------CCCCCceeEEEE
Q 027441 140 SPSLVIADFGCGD-ARLAKSVK----NK-VFSFDLVSNDPSV-------IACDMSNT-----------PLNSSSVDVAVF 195 (223)
Q Consensus 140 ~~~~~ILDiGcG~-G~~a~~la----~~-v~gvDis~~~~~~-------~~~d~~~l-----------p~~~~sfD~Vi~ 195 (223)
.++.+||-.|+|. |..+..++ .. |++++.++.+..+ ...+.... ......||+|+.
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~vld 240 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVIE 240 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCCEEEE
Confidence 4677888888764 44444444 34 7777655421111 01111111 122345899986
Q ss_pred cccccCCCHHHHHHHHHHccCCCCEEE
Q 027441 196 CLSLMGINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 196 ~~~l~~~d~~~~l~e~~rvLkpgG~lv 222 (223)
+... ...+.++.++|+++|.++
T Consensus 241 ~~g~-----~~~~~~~~~~l~~~G~~v 262 (343)
T cd05285 241 CTGA-----ESCIQTAIYATRPGGTVV 262 (343)
T ss_pred CCCC-----HHHHHHHHHHhhcCCEEE
Confidence 6441 347888899999999886
No 356
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=58.37 E-value=21 Score=31.86 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=24.0
Q ss_pred CCCeEEEECCcchHHHHHhc-------------CceEEEecCC
Q 027441 141 PSLVIADFGCGDARLAKSVK-------------NKVFSFDLVS 170 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-------------~~v~gvDis~ 170 (223)
....|++||.|+|.++..+. .++.-+++|+
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~ 119 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSP 119 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCH
Confidence 45789999999999877664 3677888887
No 357
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=57.52 E-value=36 Score=29.37 Aligned_cols=78 Identities=21% Similarity=0.253 Sum_probs=44.7
Q ss_pred CCCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcE-------EEccCCCCC--------CCCCceeEEEEccc
Q 027441 140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSV-------IACDMSNTP--------LNSSSVDVAVFCLS 198 (223)
Q Consensus 140 ~~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~-------~~~d~~~lp--------~~~~sfD~Vi~~~~ 198 (223)
.++.+||=.|+|. |..+..++ . .|+++|.++....+ ...+..... .....+|+|+.+..
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g 244 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIAGG 244 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEECCC
Confidence 3667888888763 33333343 2 57788776521110 111111111 12245898885443
Q ss_pred ccCCCHHHHHHHHHHccCCCCEEE
Q 027441 199 LMGINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 199 l~~~d~~~~l~e~~rvLkpgG~lv 222 (223)
- ...+.++.+.|+++|.++
T Consensus 245 ~-----~~~~~~~~~~l~~~G~~v 263 (351)
T cd08285 245 G-----QDTFEQALKVLKPGGTIS 263 (351)
T ss_pred C-----HHHHHHHHHHhhcCCEEE
Confidence 1 467889999999999886
No 358
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=56.62 E-value=21 Score=30.68 Aligned_cols=59 Identities=15% Similarity=0.157 Sum_probs=39.3
Q ss_pred CCCCeEEEECCcchHHHHHhc---CceEEEecCC--------CCCcEEEccCCCCCCCCCceeEEEEccc
Q 027441 140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS--------NDPSVIACDMSNTPLNSSSVDVAVFCLS 198 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~ 198 (223)
.++....|+|+-+|.|+-.|. -.|+++|--+ ..+.....|-..+......+|-.+|.++
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmV 279 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMV 279 (358)
T ss_pred cCCceeeecccCCCccchhhhhcceEEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehh
Confidence 378999999999999999887 3688998765 2334444444443323344666666554
No 359
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=55.91 E-value=4.2 Score=29.13 Aligned_cols=14 Identities=29% Similarity=0.641 Sum_probs=10.8
Q ss_pred EEEECCcchHHHHH
Q 027441 145 IADFGCGDARLAKS 158 (223)
Q Consensus 145 ILDiGcG~G~~a~~ 158 (223)
-+|||||.|.....
T Consensus 6 NIDIGcG~GNTmda 19 (124)
T PF07101_consen 6 NIDIGCGAGNTMDA 19 (124)
T ss_pred ccccccCCCcchhh
Confidence 47999999975443
No 360
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=54.77 E-value=1.1e+02 Score=26.56 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=22.8
Q ss_pred CceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 188 ~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
..+|+|+.+... ...+....+.|+++|.+++
T Consensus 248 ~~~d~vid~~g~-----~~~~~~~~~~l~~~G~~v~ 278 (361)
T cd08231 248 RGADVVIEASGH-----PAAVPEGLELLRRGGTYVL 278 (361)
T ss_pred CCCcEEEECCCC-----hHHHHHHHHHhccCCEEEE
Confidence 458998865321 3567788899999999873
No 361
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=53.23 E-value=37 Score=29.18 Aligned_cols=78 Identities=8% Similarity=0.020 Sum_probs=45.1
Q ss_pred CCCCeEEEECCc--chHHHHHhc----CceEEEecCCCCCcEE--------EccCC---CC-----CCCCCceeEEEEcc
Q 027441 140 SPSLVIADFGCG--DARLAKSVK----NKVFSFDLVSNDPSVI--------ACDMS---NT-----PLNSSSVDVAVFCL 197 (223)
Q Consensus 140 ~~~~~ILDiGcG--~G~~a~~la----~~v~gvDis~~~~~~~--------~~d~~---~l-----p~~~~sfD~Vi~~~ 197 (223)
.++.+||=.|++ .|..+..++ .+|++++.++....+. ..+.. ++ ......+|+|+-+.
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~ 229 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNV 229 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECC
Confidence 467889988863 344444444 4677776554221110 01100 10 01124689888654
Q ss_pred cccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 198 SLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 198 ~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
. ...+.++.++|+++|.+++
T Consensus 230 g------~~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 230 G------GKMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred C------HHHHHHHHHHhccCcEEEE
Confidence 4 3567889999999999873
No 362
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=52.88 E-value=8.1 Score=32.93 Aligned_cols=52 Identities=19% Similarity=0.348 Sum_probs=36.7
Q ss_pred eEEEECCcchHHHHHhc----CceEEEecCCC-------C-CcEEEccCCCCC---CCCCceeEEEEc
Q 027441 144 VIADFGCGDARLAKSVK----NKVFSFDLVSN-------D-PSVIACDMSNTP---LNSSSVDVAVFC 196 (223)
Q Consensus 144 ~ILDiGcG~G~~a~~la----~~v~gvDis~~-------~-~~~~~~d~~~lp---~~~~sfD~Vi~~ 196 (223)
+++|+=||.|.+...|. ..|.++|+++. + .....+|+..+. ++. .+|+++.+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~~~~~~Di~~~~~~~l~~-~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFPEVICGDITEIDPSDLPK-DVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHTEEEESHGGGCHHHHHHH-T-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcccccccccccccccccccc-cceEEEec
Confidence 68999999999877775 36789999971 1 167788887764 443 59999865
No 363
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=51.96 E-value=53 Score=28.99 Aligned_cols=91 Identities=8% Similarity=0.035 Sum_probs=49.5
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc-Cc--eEEEecCC-------CCCcEEEccCCCCCC-CCCceeEEEEccc
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK-NK--VFSFDLVS-------NDPSVIACDMSNTPL-NSSSVDVAVFCLS 198 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-~~--v~gvDis~-------~~~~~~~~d~~~lp~-~~~sfD~Vi~~~~ 198 (223)
+.+++++... .+..||=+|--...+...|. .. |...+... .......+ . ..+. ....||+|+....
T Consensus 9 ~~~~r~~~~~-~~~~~l~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~-~~~~~~~~~~d~~~~~~p 85 (342)
T PRK09489 9 EVLLRHSDDF-EQRRVLFAGDLQDDLPAQLDAASVRVHTQQFHHWQVLSRQMGDNARFS-L-VATAEDVADCDTLIYYWP 85 (342)
T ss_pred HHHHhhHHHh-CCCcEEEEcCcchhhHHhhhccceEEehhhhHHHHHHHhhcCCceEec-c-ccCCccCCCCCEEEEECC
Confidence 4555555544 56678888866666555554 22 22211111 01111111 1 1111 1257899886654
Q ss_pred ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 199 LMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 199 l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
=.--...-.|..+.+.|.|||.|++
T Consensus 86 k~k~~~~~~l~~~~~~l~~g~~i~~ 110 (342)
T PRK09489 86 KNKQEAQFQLMNLLSLLPVGTDIFV 110 (342)
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 3322445788999999999999985
No 364
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=51.31 E-value=1.1e+02 Score=26.18 Aligned_cols=74 Identities=12% Similarity=0.062 Sum_probs=43.0
Q ss_pred CeEEEECC--cchHHHHHhc----C-ceEEEecCCCCCcEE--------EccCCCCC-------CCCCceeEEEEccccc
Q 027441 143 LVIADFGC--GDARLAKSVK----N-KVFSFDLVSNDPSVI--------ACDMSNTP-------LNSSSVDVAVFCLSLM 200 (223)
Q Consensus 143 ~~ILDiGc--G~G~~a~~la----~-~v~gvDis~~~~~~~--------~~d~~~lp-------~~~~sfD~Vi~~~~l~ 200 (223)
.+||=.|+ |.|..+..++ . +|++++.++....++ ..+..... +....+|+|+.+..
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g-- 233 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVG-- 233 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCC--
Confidence 78888886 3455555444 3 688887665221110 11111111 11246899986544
Q ss_pred CCCHHHHHHHHHHccCCCCEEE
Q 027441 201 GINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 201 ~~d~~~~l~e~~rvLkpgG~lv 222 (223)
...+.++.++|+++|.++
T Consensus 234 ----~~~~~~~~~~l~~~G~iv 251 (345)
T cd08293 234 ----GEISDTVISQMNENSHII 251 (345)
T ss_pred ----cHHHHHHHHHhccCCEEE
Confidence 224578889999999987
No 365
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=51.22 E-value=50 Score=28.89 Aligned_cols=79 Identities=15% Similarity=0.261 Sum_probs=44.7
Q ss_pred CCCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcE-------EEccCCCC---------CCCCCceeEEEEcc
Q 027441 140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSV-------IACDMSNT---------PLNSSSVDVAVFCL 197 (223)
Q Consensus 140 ~~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~-------~~~d~~~l---------p~~~~sfD~Vi~~~ 197 (223)
.++.+||=+|+|. |.++..++ . .|+++|.++....+ ...|.... .+..+.+|+|+-+.
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~ 264 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECI 264 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECC
Confidence 3678888888763 33333333 3 68888887622211 01111110 01123588888653
Q ss_pred cccCCCHHHHHHHHHHccCCC-CEEEc
Q 027441 198 SLMGINFPNYLQEAQRVLKPR-GEEQI 223 (223)
Q Consensus 198 ~l~~~d~~~~l~e~~rvLkpg-G~lvi 223 (223)
. -...+..+.+.|+++ |.+++
T Consensus 265 g-----~~~~~~~a~~~l~~~~G~~v~ 286 (368)
T cd08300 265 G-----NVKVMRAALEACHKGWGTSVI 286 (368)
T ss_pred C-----ChHHHHHHHHhhccCCCeEEE
Confidence 3 145778888999987 88763
No 366
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=50.94 E-value=53 Score=29.83 Aligned_cols=74 Identities=9% Similarity=0.037 Sum_probs=44.2
Q ss_pred CCCeEEEECCcchHHH-H-Hhc---CceEEEecCCCCCc------EEEccCCCCCCCCCceeEEEEcccccCCCHHHHHH
Q 027441 141 PSLVIADFGCGDARLA-K-SVK---NKVFSFDLVSNDPS------VIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQ 209 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a-~-~la---~~v~gvDis~~~~~------~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~l~ 209 (223)
.+.+|+=+|+|.=... . .+. .+|+++|.++.... +...++... + ...|+|+.+.. ...++.
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leea-l--~~aDVVItaTG-----~~~vI~ 265 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEA-A--KIGDIFITATG-----NKDVIR 265 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHH-H--hcCCEEEECCC-----CHHHHH
Confidence 6789999999984322 2 222 57999988873221 111111111 1 24688876543 244554
Q ss_pred -HHHHccCCCCEEE
Q 027441 210 -EAQRVLKPRGEEQ 222 (223)
Q Consensus 210 -e~~rvLkpgG~lv 222 (223)
+....+++|++|+
T Consensus 266 ~~~~~~mK~Gaili 279 (406)
T TIGR00936 266 GEHFENMKDGAIVA 279 (406)
T ss_pred HHHHhcCCCCcEEE
Confidence 4888999999986
No 367
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.29 E-value=8.6 Score=36.31 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=21.6
Q ss_pred hhHHHhhhhccCCC-CCCchhhhhhhhhhhhhhhhhcccccCCc
Q 027441 6 SRKRKRRRRHNSNS-KPQDQESYQSKSTAKTTAKKHKQDTVKNN 48 (223)
Q Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (223)
++|++||++.+.+. .++.+.+..+.++.-....|.|++.+.++
T Consensus 92 ~KKK~krkkKk~~~~~d~~e~s~deq~~a~l~~~k~K~d~~~e~ 135 (665)
T KOG2422|consen 92 KKKKKKRKKKKSTAEVDKDEGSDDEQKLAILKYGKTKNDDKNEE 135 (665)
T ss_pred cchhhhhccccccCccccccCCchHHHHHHHHhhccchhhhhcc
Confidence 34444444444444 44444455556666655555555555333
No 368
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=50.09 E-value=29 Score=32.18 Aligned_cols=83 Identities=19% Similarity=0.185 Sum_probs=53.0
Q ss_pred CCCeEEEECCcchHHHHHhc-----CceEEEecCCCC---------------CcEEEccC-------CCCCCCCCceeEE
Q 027441 141 PSLVIADFGCGDARLAKSVK-----NKVFSFDLVSND---------------PSVIACDM-------SNTPLNSSSVDVA 193 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~~~---------------~~~~~~d~-------~~lp~~~~sfD~V 193 (223)
....+|-+|-|.|.+...+. ..++++.+.+.. ..+...|. ....-.+..||++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 45778999999998888776 478888888711 11111111 1111246689998
Q ss_pred EEcc---cccCC--CHH-----HHHHHHHHccCCCCEEEc
Q 027441 194 VFCL---SLMGI--NFP-----NYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 194 i~~~---~l~~~--d~~-----~~l~e~~rvLkpgG~lvi 223 (223)
+.-- -.|.+ .++ .++..+.-+|.|.|.++|
T Consensus 375 ~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~i 414 (482)
T KOG2352|consen 375 MVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFII 414 (482)
T ss_pred EEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEE
Confidence 7432 13444 332 778888999999999875
No 369
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=49.92 E-value=12 Score=32.27 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=24.7
Q ss_pred CCceeEEEEcccccCC-CHHHHHHHHHHccCCCCEEEc
Q 027441 187 SSSVDVAVFCLSLMGI-NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 187 ~~sfD~Vi~~~~l~~~-d~~~~l~e~~rvLkpgG~lvi 223 (223)
.+-||+|+.+...-|+ .+. +.++++|+|.|++
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~Lvv 252 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVV 252 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEE
Confidence 4689999987776555 444 7778999999985
No 370
>PLN02494 adenosylhomocysteinase
Probab=49.68 E-value=33 Score=31.87 Aligned_cols=89 Identities=15% Similarity=0.064 Sum_probs=48.6
Q ss_pred HHHHHHHhccCCCCeEEEECCcchH--HHHHhc---CceEEEecCCCCCcEEEcc-CCCCCCCC--CceeEEEEcccccC
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDAR--LAKSVK---NKVFSFDLVSNDPSVIACD-MSNTPLNS--SSVDVAVFCLSLMG 201 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~--~a~~la---~~v~gvDis~~~~~~~~~d-~~~lp~~~--~sfD~Vi~~~~l~~ 201 (223)
+-|++.......+.+|+=+|+|.=. .+..+. .+|+++|.++........+ +...++.+ ...|+|+.+..-.
T Consensus 242 d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~tTGt~- 320 (477)
T PLN02494 242 DGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVTTTGNK- 320 (477)
T ss_pred HHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEECCCCc-
Confidence 4444443332357899999999633 222222 5799998887431110000 00011111 3469998744322
Q ss_pred CCHHHHHHHHHHccCCCCEEE
Q 027441 202 INFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 202 ~d~~~~l~e~~rvLkpgG~lv 222 (223)
..+..+....|++||+|+
T Consensus 321 ---~vI~~e~L~~MK~GAiLi 338 (477)
T PLN02494 321 ---DIIMVDHMRKMKNNAIVC 338 (477)
T ss_pred ---cchHHHHHhcCCCCCEEE
Confidence 223467778899999987
No 371
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=48.85 E-value=29 Score=31.40 Aligned_cols=81 Identities=16% Similarity=0.128 Sum_probs=49.3
Q ss_pred CCCCeEEEECCcchHHHHHhc-----CceEEEecCCC------------------------CCcEEEccCCCCC---CCC
Q 027441 140 SPSLVIADFGCGDARLAKSVK-----NKVFSFDLVSN------------------------DPSVIACDMSNTP---LNS 187 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~~------------------------~~~~~~~d~~~lp---~~~ 187 (223)
+++....|+|.|-|.+...++ ..-+|+++... .+..+.+++.+.. .-.
T Consensus 191 g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI~ 270 (419)
T KOG3924|consen 191 GPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEIQ 270 (419)
T ss_pred CCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHHh
Confidence 478999999999999888776 24467777751 1222333332211 112
Q ss_pred CceeEEEEcccccCCCHH--HHHHHHHHccCCCCEEE
Q 027441 188 SSVDVAVFCLSLMGINFP--NYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 188 ~sfD~Vi~~~~l~~~d~~--~~l~e~~rvLkpgG~lv 222 (223)
...++|++..+. +|++ .-+.++..-+++|-.++
T Consensus 271 ~eatvi~vNN~~--Fdp~L~lr~~eil~~ck~gtrIi 305 (419)
T KOG3924|consen 271 TEATVIFVNNVA--FDPELKLRSKEILQKCKDGTRII 305 (419)
T ss_pred hcceEEEEeccc--CCHHHHHhhHHHHhhCCCcceEe
Confidence 456788877764 3444 33447777778877654
No 372
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=47.75 E-value=88 Score=27.25 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=41.7
Q ss_pred CeEEEECCcchH----HHHHhc-----CceEEEecCCCCCc-------EEEc-cCCCCC--CCCCceeEEEEcccccCCC
Q 027441 143 LVIADFGCGDAR----LAKSVK-----NKVFSFDLVSNDPS-------VIAC-DMSNTP--LNSSSVDVAVFCLSLMGIN 203 (223)
Q Consensus 143 ~~ILDiGcG~G~----~a~~la-----~~v~gvDis~~~~~-------~~~~-d~~~lp--~~~~sfD~Vi~~~~l~~~d 203 (223)
..++=.|+|||. .+.+|. -+++++|+....+- .+.+ .....| +...-+|-|+. ++
T Consensus 170 ~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i~GIG~~~ip~~~~~~~iD~v~~------V~ 243 (300)
T COG0031 170 VDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIEGIGAGFVPENLDLDLIDEVIR------VS 243 (300)
T ss_pred CCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCCCCcccCCCCCCcCCcccccccCceEEE------EC
Confidence 557778888887 455565 36888988641110 1110 001122 11122444443 34
Q ss_pred HHHHHHHHHHccCCCCEEE
Q 027441 204 FPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 204 ~~~~l~e~~rvLkpgG~lv 222 (223)
-+.++..++++++..|+|+
T Consensus 244 d~~A~~~~r~La~~eGilv 262 (300)
T COG0031 244 DEEAIATARRLAREEGLLV 262 (300)
T ss_pred HHHHHHHHHHHHHHhCeee
Confidence 4788888888888888875
No 373
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=46.61 E-value=54 Score=28.75 Aligned_cols=79 Identities=18% Similarity=0.277 Sum_probs=45.2
Q ss_pred CCCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcE-------EEccCCC--CC-------CCCCceeEEEEcc
Q 027441 140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSV-------IACDMSN--TP-------LNSSSVDVAVFCL 197 (223)
Q Consensus 140 ~~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~-------~~~d~~~--lp-------~~~~sfD~Vi~~~ 197 (223)
.++.+||=+|||. |.++..++ . +|+++|.++.+..+ ...|..+ .+ +..+.+|+|+-+-
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~ 263 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECI 263 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECC
Confidence 3678888899864 33444444 3 68899887622111 0111110 00 1122578888553
Q ss_pred cccCCCHHHHHHHHHHccCCC-CEEEc
Q 027441 198 SLMGINFPNYLQEAQRVLKPR-GEEQI 223 (223)
Q Consensus 198 ~l~~~d~~~~l~e~~rvLkpg-G~lvi 223 (223)
.- +..+..+.+.|++| |.+++
T Consensus 264 G~-----~~~~~~~~~~~~~~~G~~v~ 285 (368)
T TIGR02818 264 GN-----VNVMRAALECCHKGWGESII 285 (368)
T ss_pred CC-----HHHHHHHHHHhhcCCCeEEE
Confidence 31 45778888999886 98763
No 374
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=46.08 E-value=56 Score=28.02 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=23.2
Q ss_pred CCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEE
Q 027441 187 SSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 187 ~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lv 222 (223)
...||+|+.+..- ...+.++.+.|+++|.++
T Consensus 228 ~~~~d~vld~~g~-----~~~~~~~~~~l~~~g~~v 258 (340)
T TIGR00692 228 GEGVDVFLEMSGA-----PKALEQGLQAVTPGGRVS 258 (340)
T ss_pred CCCCCEEEECCCC-----HHHHHHHHHhhcCCCEEE
Confidence 3568999876321 457888999999999886
No 375
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=45.83 E-value=57 Score=27.96 Aligned_cols=78 Identities=14% Similarity=0.127 Sum_probs=43.3
Q ss_pred CCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcE-------EEccCCCCC--------CCCCceeEEEEcccc
Q 027441 141 PSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSV-------IACDMSNTP--------LNSSSVDVAVFCLSL 199 (223)
Q Consensus 141 ~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~-------~~~d~~~lp--------~~~~sfD~Vi~~~~l 199 (223)
++.+||-.|+|. |..+..++ . .|++++.++....+ ...+....+ .....+|+|+.+..-
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 242 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEMSGA 242 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHhcCCCCCCEEEECCCC
Confidence 566777777754 34444343 2 57777655422111 111221111 123468998864331
Q ss_pred cCCCHHHHHHHHHHccCCCCEEEc
Q 027441 200 MGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 200 ~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
...+..+.++|+++|.+++
T Consensus 243 -----~~~~~~~~~~l~~~G~~v~ 261 (341)
T PRK05396 243 -----PSAFRQMLDNMNHGGRIAM 261 (341)
T ss_pred -----HHHHHHHHHHHhcCCEEEE
Confidence 4578888999999998863
No 376
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=45.77 E-value=74 Score=27.68 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=23.0
Q ss_pred CCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEE
Q 027441 187 SSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 187 ~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lv 222 (223)
...||+|+.+..- ...+.++.+.|+++|.++
T Consensus 254 ~~~~d~vld~vg~-----~~~~~~~~~~l~~~G~~v 284 (367)
T cd08263 254 GRGVDVVVEALGK-----PETFKLALDVVRDGGRAV 284 (367)
T ss_pred CCCCCEEEEeCCC-----HHHHHHHHHHHhcCCEEE
Confidence 3568999865431 236788899999999986
No 377
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=45.73 E-value=31 Score=26.87 Aligned_cols=30 Identities=27% Similarity=0.255 Sum_probs=23.2
Q ss_pred CCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 187 SSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 187 ~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
...+|++++... ..+......|+|||++++
T Consensus 55 ~~~~Dilv~l~~-------~~~~~~~~~l~~~g~vi~ 84 (173)
T PF01558_consen 55 VGEADILVALDP-------EALERHLKGLKPGGVVII 84 (173)
T ss_dssp TSSESEEEESSH-------HHHHHCGTTCETTEEEEE
T ss_pred cCCCCEEEEcCH-------HHHHHHhcCcCcCeEEEE
Confidence 378999997753 344477888999999985
No 378
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=45.72 E-value=38 Score=29.60 Aligned_cols=78 Identities=23% Similarity=0.372 Sum_probs=44.8
Q ss_pred CCCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCC--------cEEEccCCCCC-------CCCCceeEEEEccc
Q 027441 140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDP--------SVIACDMSNTP-------LNSSSVDVAVFCLS 198 (223)
Q Consensus 140 ~~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~--------~~~~~d~~~lp-------~~~~sfD~Vi~~~~ 198 (223)
.++.+||=.|+|. |..+..++ . .|+++|.++.+. +.+. +..... +....+|+|+.+..
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i-~~~~~~~~~~v~~~~~~~~d~vld~~g 263 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVI-NPKEEDLVAAIREITGGGVDYALDTTG 263 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEe-cCCCcCHHHHHHHHhCCCCcEEEECCC
Confidence 3567888888754 33444343 2 588888765221 1111 111100 11345899886543
Q ss_pred ccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 199 LMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 199 l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
. ...+..+.++|+++|.++.
T Consensus 264 ~-----~~~~~~~~~~l~~~G~~v~ 283 (365)
T cd08278 264 V-----PAVIEQAVDALAPRGTLAL 283 (365)
T ss_pred C-----cHHHHHHHHHhccCCEEEE
Confidence 1 3567889999999998873
No 379
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=45.57 E-value=63 Score=28.25 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=43.7
Q ss_pred CCCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcEE-------EccCCC--C-------CCCCCceeEEEEcc
Q 027441 140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSVI-------ACDMSN--T-------PLNSSSVDVAVFCL 197 (223)
Q Consensus 140 ~~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~~-------~~d~~~--l-------p~~~~sfD~Vi~~~ 197 (223)
.++.+||=+|+|. |..+..++ . +|+++|.++.+..+. ..+... . .+....+|+|+-+.
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~ 262 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECT 262 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEECC
Confidence 3678888888763 33333333 3 688888765221110 011111 0 01123588888543
Q ss_pred cccCCCHHHHHHHHHHccCCC-CEEEc
Q 027441 198 SLMGINFPNYLQEAQRVLKPR-GEEQI 223 (223)
Q Consensus 198 ~l~~~d~~~~l~e~~rvLkpg-G~lvi 223 (223)
.- ...+.++.+.|+++ |.+++
T Consensus 263 g~-----~~~~~~~~~~l~~~~G~~v~ 284 (365)
T cd08277 263 GN-----ADLMNEALESTKLGWGVSVV 284 (365)
T ss_pred CC-----hHHHHHHHHhcccCCCEEEE
Confidence 31 45778888999885 88863
No 380
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=45.39 E-value=1.1e+02 Score=25.34 Aligned_cols=77 Identities=14% Similarity=0.134 Sum_probs=42.2
Q ss_pred CCCCeEEEECCc--chHHHHHhc----CceEEEecCCCCCcEE-------EccCCCCC--------CCCCceeEEEEccc
Q 027441 140 SPSLVIADFGCG--DARLAKSVK----NKVFSFDLVSNDPSVI-------ACDMSNTP--------LNSSSVDVAVFCLS 198 (223)
Q Consensus 140 ~~~~~ILDiGcG--~G~~a~~la----~~v~gvDis~~~~~~~-------~~d~~~lp--------~~~~sfD~Vi~~~~ 198 (223)
.++..||-.||. .|..+..++ ..|++++.++....+. ..+..... .....+|+++.+..
T Consensus 138 ~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~g 217 (323)
T cd08241 138 QPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVYDPVG 217 (323)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEEEEECcc
Confidence 367899999983 233333333 4677777654221110 00111111 12245898887654
Q ss_pred ccCCCHHHHHHHHHHccCCCCEEE
Q 027441 199 LMGINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 199 l~~~d~~~~l~e~~rvLkpgG~lv 222 (223)
...+..+.+.++++|.++
T Consensus 218 ------~~~~~~~~~~~~~~g~~v 235 (323)
T cd08241 218 ------GDVFEASLRSLAWGGRLL 235 (323)
T ss_pred ------HHHHHHHHHhhccCCEEE
Confidence 245566778889998875
No 381
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=44.89 E-value=49 Score=29.30 Aligned_cols=76 Identities=14% Similarity=0.098 Sum_probs=43.3
Q ss_pred CCCeEEEECCcc-hHHHHHhc----CceEEEecCCCC-C--------cEEEccCCC---C-CCCCCceeEEEEcccccCC
Q 027441 141 PSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSND-P--------SVIACDMSN---T-PLNSSSVDVAVFCLSLMGI 202 (223)
Q Consensus 141 ~~~~ILDiGcG~-G~~a~~la----~~v~gvDis~~~-~--------~~~~~d~~~---l-p~~~~sfD~Vi~~~~l~~~ 202 (223)
++.+||=.|||. |.++..++ .+|++++.++.. . +.+. +..+ + ... ..+|+|+-+..
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i-~~~~~~~v~~~~-~~~D~vid~~G---- 251 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFL-VTTDSQKMKEAV-GTMDFIIDTVS---- 251 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEE-cCcCHHHHHHhh-CCCcEEEECCC----
Confidence 567888888864 33444343 468888766421 1 1111 1110 0 001 24788886543
Q ss_pred CHHHHHHHHHHccCCCCEEEc
Q 027441 203 NFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 203 d~~~~l~e~~rvLkpgG~lvi 223 (223)
-+..+..+.++|++||.+++
T Consensus 252 -~~~~~~~~~~~l~~~G~iv~ 271 (375)
T PLN02178 252 -AEHALLPLFSLLKVSGKLVA 271 (375)
T ss_pred -cHHHHHHHHHhhcCCCEEEE
Confidence 14467888899999999863
No 382
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.75 E-value=19 Score=31.36 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=34.5
Q ss_pred EEEECCcchHHHHHhc----CceEEEecCC----------CCCcEEEccCCCCCCC-CCceeEEEEc
Q 027441 145 IADFGCGDARLAKSVK----NKVFSFDLVS----------NDPSVIACDMSNTPLN-SSSVDVAVFC 196 (223)
Q Consensus 145 ILDiGcG~G~~a~~la----~~v~gvDis~----------~~~~~~~~d~~~lp~~-~~sfD~Vi~~ 196 (223)
|+|+=||.|.++.-|. .-+.++|+.+ .. .++.+|+..+... -..+|+++.+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEec
Confidence 5899999999887775 2466899986 12 4456777665421 1247998855
No 383
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=44.61 E-value=1.4e+02 Score=25.51 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=43.8
Q ss_pred CCCCeEEEECCcc-hHHHHHhc----Cc-eEEEecCCCCCcE-------EEccCCCC------C-CCCCceeEEEEcccc
Q 027441 140 SPSLVIADFGCGD-ARLAKSVK----NK-VFSFDLVSNDPSV-------IACDMSNT------P-LNSSSVDVAVFCLSL 199 (223)
Q Consensus 140 ~~~~~ILDiGcG~-G~~a~~la----~~-v~gvDis~~~~~~-------~~~d~~~l------p-~~~~sfD~Vi~~~~l 199 (223)
.++..||-.|+|. |..+..++ .. |++++-++....+ ...+.... . .....||+|+.+..
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~~g- 236 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEAAG- 236 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEECCC-
Confidence 3667888888754 44444444 34 7777655421111 01111100 1 11234899986632
Q ss_pred cCCCHHHHHHHHHHccCCCCEEE
Q 027441 200 MGINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 200 ~~~d~~~~l~e~~rvLkpgG~lv 222 (223)
....+..+.++|+++|.++
T Consensus 237 ----~~~~~~~~~~~l~~~G~~v 255 (343)
T cd08236 237 ----SPATIEQALALARPGGKVV 255 (343)
T ss_pred ----CHHHHHHHHHHhhcCCEEE
Confidence 2457788899999999986
No 384
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=44.49 E-value=1.2e+02 Score=27.08 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=25.6
Q ss_pred CceeEEEEcccccC---------CCHHHHHHHHHHccCCCCEEEc
Q 027441 188 SSVDVAVFCLSLMG---------INFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 188 ~sfD~Vi~~~~l~~---------~d~~~~l~e~~rvLkpgG~lvi 223 (223)
..+|+|+-+..... .+....+.++..+|++||.+++
T Consensus 253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 253 PEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred CCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 45899986554321 1234689999999999999874
No 385
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=43.98 E-value=1.4e+02 Score=25.63 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=22.8
Q ss_pred CceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 188 ~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
..+|+|+.+-. -...+.++.++|+++|.+++
T Consensus 230 ~~vd~vld~~g-----~~~~~~~~~~~l~~~G~~v~ 260 (341)
T cd05281 230 TGVDVVLEMSG-----NPKAIEQGLKALTPGGRVSI 260 (341)
T ss_pred CCCCEEEECCC-----CHHHHHHHHHHhccCCEEEE
Confidence 46899986542 14567888999999999863
No 386
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=43.80 E-value=35 Score=31.19 Aligned_cols=74 Identities=15% Similarity=0.117 Sum_probs=44.7
Q ss_pred CCCeEEEECCcchHH--HHHhc---CceEEEecCCCCCcE------EEccCCCCCCCCCceeEEEEcccccCCCHHHHHH
Q 027441 141 PSLVIADFGCGDARL--AKSVK---NKVFSFDLVSNDPSV------IACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQ 209 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~--a~~la---~~v~gvDis~~~~~~------~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~l~ 209 (223)
.+.+|+=+|+|.=.. +..+. .+|+.+|+++..... ...++... -..+|+|+.+.. ...++.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~ea---l~~aDVVI~aTG-----~~~vI~ 282 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEA---AELGDIFVTATG-----NKDVIT 282 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHH---HhCCCEEEECCC-----CHHHHH
Confidence 578999999986332 12222 589999988743211 11111111 135799987643 134554
Q ss_pred -HHHHccCCCCEEE
Q 027441 210 -EAQRVLKPRGEEQ 222 (223)
Q Consensus 210 -e~~rvLkpgG~lv 222 (223)
+....+++|++++
T Consensus 283 ~~~~~~mK~Gaili 296 (425)
T PRK05476 283 AEHMEAMKDGAILA 296 (425)
T ss_pred HHHHhcCCCCCEEE
Confidence 6888999999886
No 387
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.51 E-value=1.4e+02 Score=25.75 Aligned_cols=81 Identities=17% Similarity=0.181 Sum_probs=55.7
Q ss_pred CCeEEEECCcchHHHHHhc----CceEEEecCC-----------------CCCcEEEccCCCCC---------CCCCcee
Q 027441 142 SLVIADFGCGDARLAKSVK----NKVFSFDLVS-----------------NDPSVIACDMSNTP---------LNSSSVD 191 (223)
Q Consensus 142 ~~~ILDiGcG~G~~a~~la----~~v~gvDis~-----------------~~~~~~~~d~~~lp---------~~~~sfD 191 (223)
...|+-||||-=.-+..+. -.|+-+|.-+ ...+++..|+..-. |....--
T Consensus 93 ~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~pt 172 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRPT 172 (297)
T ss_pred ccEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCCe
Confidence 5789999999655444444 2445555443 14667788886321 3345557
Q ss_pred EEEEcccccCCCHH---HHHHHHHHccCCCCEEE
Q 027441 192 VAVFCLSLMGINFP---NYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 192 ~Vi~~~~l~~~d~~---~~l~e~~rvLkpgG~lv 222 (223)
++++-+++++++++ .+|..+...+.||-.++
T Consensus 173 ~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~ 206 (297)
T COG3315 173 LWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVA 206 (297)
T ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCceEE
Confidence 88999999999655 88888888888887765
No 388
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=43.48 E-value=19 Score=32.10 Aligned_cols=82 Identities=13% Similarity=0.028 Sum_probs=43.1
Q ss_pred CCCeEEEECCcc-hHHHHHhc----CceEEEecCCCCCc--------EEEccCC---CCCCCCCceeEEEEcccccCCC-
Q 027441 141 PSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPS--------VIACDMS---NTPLNSSSVDVAVFCLSLMGIN- 203 (223)
Q Consensus 141 ~~~~ILDiGcG~-G~~a~~la----~~v~gvDis~~~~~--------~~~~d~~---~lp~~~~sfD~Vi~~~~l~~~d- 203 (223)
+..+|+=+|+|. |..+...+ ..|+++|.++.... .+..+.. .+.-.-..+|+|+.+..+....
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~ 245 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKA 245 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCC
Confidence 346799999985 33333322 47889998752211 1111111 1100013579999775332221
Q ss_pred HHHHHHHHHHccCCCCEEE
Q 027441 204 FPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 204 ~~~~l~e~~rvLkpgG~lv 222 (223)
+.-+-.++.+.++||++++
T Consensus 246 p~lit~~~l~~mk~g~vIv 264 (370)
T TIGR00518 246 PKLVSNSLVAQMKPGAVIV 264 (370)
T ss_pred CcCcCHHHHhcCCCCCEEE
Confidence 2223366667789998875
No 389
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=42.64 E-value=1.6e+02 Score=23.02 Aligned_cols=93 Identities=17% Similarity=0.188 Sum_probs=55.3
Q ss_pred HHHHHHHhc-cCCCCeEEEECCcchHHHHHh----cCceEEEecCCC----C-CcEEEccCCC---CC--CCCCceeEEE
Q 027441 130 NIIVKWLKD-HSPSLVIADFGCGDARLAKSV----KNKVFSFDLVSN----D-PSVIACDMSN---TP--LNSSSVDVAV 194 (223)
Q Consensus 130 ~~i~~~l~~-~~~~~~ILDiGcG~G~~a~~l----a~~v~gvDis~~----~-~~~~~~d~~~---lp--~~~~sfD~Vi 194 (223)
..+.+.+.. .....+|+-|||=+-.....- ...++-+|+... . -.|+.-|... +| + .++||+|+
T Consensus 13 ~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~~~~F~fyD~~~p~~~~~~l-~~~~d~vv 91 (162)
T PF10237_consen 13 EFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFGGDEFVFYDYNEPEELPEEL-KGKFDVVV 91 (162)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcCCcceEECCCCChhhhhhhc-CCCceEEE
Confidence 344555443 225689999999887765554 146788888761 1 1466666543 22 2 47899999
Q ss_pred EcccccCCCHH-HHHHHHHHccCCCCEEEc
Q 027441 195 FCLSLMGINFP-NYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 195 ~~~~l~~~d~~-~~l~e~~rvLkpgG~lvi 223 (223)
+-=-+--.+.. .+...+.-++++++.+++
T Consensus 92 ~DPPFl~~ec~~k~a~ti~~L~k~~~kii~ 121 (162)
T PF10237_consen 92 IDPPFLSEECLTKTAETIRLLLKPGGKIIL 121 (162)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhCccceEEE
Confidence 76554111222 334555555577777763
No 390
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=42.61 E-value=53 Score=28.29 Aligned_cols=77 Identities=12% Similarity=0.094 Sum_probs=43.1
Q ss_pred CCCeEEEECCcchHHH--HHhc---CceEEEecCCCCC------cEEEccCCCCCCCCCceeEEEEcccccCCCHHHHHH
Q 027441 141 PSLVIADFGCGDARLA--KSVK---NKVFSFDLVSNDP------SVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQ 209 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a--~~la---~~v~gvDis~~~~------~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~l~ 209 (223)
.+.+|+=||+|.-..+ ..+. .+|+++|.++... .+...+...++-.-..+|+|+.+.. ...+-.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p-----~~~i~~ 225 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIP-----ALVLTK 225 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCC-----hhhhhH
Confidence 4689999999863322 2222 5788888875211 1111111111111246899998632 223445
Q ss_pred HHHHccCCCCEEE
Q 027441 210 EAQRVLKPRGEEQ 222 (223)
Q Consensus 210 e~~rvLkpgG~lv 222 (223)
++...++||++++
T Consensus 226 ~~l~~~~~g~vII 238 (296)
T PRK08306 226 EVLSKMPPEALII 238 (296)
T ss_pred HHHHcCCCCcEEE
Confidence 6677889988775
No 391
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=42.56 E-value=2.1e+02 Score=24.15 Aligned_cols=76 Identities=22% Similarity=0.361 Sum_probs=41.6
Q ss_pred CCCeEEEECCcc-hHHHHHhc----CceEEEecCCCCCcEE-------EccCCCCCCCCCceeEEEEcccccCCCHHHHH
Q 027441 141 PSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPSVI-------ACDMSNTPLNSSSVDVAVFCLSLMGINFPNYL 208 (223)
Q Consensus 141 ~~~~ILDiGcG~-G~~a~~la----~~v~gvDis~~~~~~~-------~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~l 208 (223)
++..||=.|||. |..+..++ .+|++++.++....+. ..+.... ....+|+++.+.. ....+
T Consensus 167 ~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~vD~vi~~~~-----~~~~~ 239 (329)
T cd08298 167 PGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAGDSDDL--PPEPLDAAIIFAP-----VGALV 239 (329)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEeccCcc--CCCcccEEEEcCC-----cHHHH
Confidence 566777787763 22222222 4677776554221110 1111111 2345888875422 13578
Q ss_pred HHHHHccCCCCEEEc
Q 027441 209 QEAQRVLKPRGEEQI 223 (223)
Q Consensus 209 ~e~~rvLkpgG~lvi 223 (223)
.++.+.|+++|.+++
T Consensus 240 ~~~~~~l~~~G~~v~ 254 (329)
T cd08298 240 PAALRAVKKGGRVVL 254 (329)
T ss_pred HHHHHHhhcCCEEEE
Confidence 889999999999863
No 392
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=41.55 E-value=1e+02 Score=26.46 Aligned_cols=77 Identities=13% Similarity=0.142 Sum_probs=42.7
Q ss_pred CCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcE-------EEccCCCCC-------CCCCceeEEEEccccc
Q 027441 141 PSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSV-------IACDMSNTP-------LNSSSVDVAVFCLSLM 200 (223)
Q Consensus 141 ~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~-------~~~d~~~lp-------~~~~sfD~Vi~~~~l~ 200 (223)
++..||-.|+|. |..+..++ . .|++++.++.+..+ ...+..+.. ...+.+|+|+.+..
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g-- 252 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAAKRIIKAAGGGVDAVIDFVN-- 252 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEecCCCccHHHHHHHHhCCCCcEEEECCC--
Confidence 567888887653 33333333 3 57777765421110 111111111 11125888886543
Q ss_pred CCCHHHHHHHHHHccCCCCEEE
Q 027441 201 GINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 201 ~~d~~~~l~e~~rvLkpgG~lv 222 (223)
....+.++.+.|+++|.++
T Consensus 253 ---~~~~~~~~~~~l~~~g~~v 271 (350)
T cd08240 253 ---NSATASLAFDILAKGGKLV 271 (350)
T ss_pred ---CHHHHHHHHHHhhcCCeEE
Confidence 1457888999999999886
No 393
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=41.28 E-value=1.3e+02 Score=25.75 Aligned_cols=33 Identities=12% Similarity=0.037 Sum_probs=23.5
Q ss_pred CceeEEEEcccccCCCHHHHHHHHHHccCCCCEEE
Q 027441 188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 188 ~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lv 222 (223)
..||+|+.+--.+. ...++..+..++.|++.++
T Consensus 71 ~~~D~vilavK~~~--~~~~~~~l~~~~~~~~~iv 103 (313)
T PRK06249 71 PPCDWVLVGLKTTA--NALLAPLIPQVAAPDAKVL 103 (313)
T ss_pred CCCCEEEEEecCCC--hHhHHHHHhhhcCCCCEEE
Confidence 56899987654333 3567777888888988765
No 394
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=40.73 E-value=96 Score=27.03 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=21.5
Q ss_pred ceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 189 sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
.+|+|+-+.. ....+..+.+.|++||.+++
T Consensus 244 ~~D~vid~~g-----~~~~~~~~~~~l~~~G~iv~ 273 (357)
T PLN02514 244 SLDYIIDTVP-----VFHPLEPYLSLLKLDGKLIL 273 (357)
T ss_pred CCcEEEECCC-----chHHHHHHHHHhccCCEEEE
Confidence 4788875433 13577788899999998863
No 395
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=39.15 E-value=93 Score=24.75 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=21.8
Q ss_pred CCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 187 SSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 187 ~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
.+..|++++... ..+ ......|+|||++++
T Consensus 65 ~~~~D~lva~d~------~~~-~~~~~~l~~gg~ii~ 94 (197)
T PRK06274 65 EGQADLLLALEP------AEV-ARNLHFLKKGGKIIV 94 (197)
T ss_pred CCCCCEEEEcCH------HHH-HHHHhhcCCCcEEEE
Confidence 578899998765 333 445567999999874
No 396
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=39.09 E-value=48 Score=30.81 Aligned_cols=74 Identities=14% Similarity=0.173 Sum_probs=43.5
Q ss_pred CCCeEEEECCcc-hH-HHHHhc---CceEEEecCCCCCc------EEEccCCCCCCCCCceeEEEEcccccCCCHHHHH-
Q 027441 141 PSLVIADFGCGD-AR-LAKSVK---NKVFSFDLVSNDPS------VIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYL- 208 (223)
Q Consensus 141 ~~~~ILDiGcG~-G~-~a~~la---~~v~gvDis~~~~~------~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~l- 208 (223)
.+.+|+=+|+|. |. ++..+. .+|+++|.++.... +...++..+ -...|+|+.+..- ..++
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leel---l~~ADIVI~atGt-----~~iI~ 324 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDV---VETADIFVTATGN-----KDIIT 324 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHH---HhcCCEEEECCCc-----ccccC
Confidence 578999999997 22 222222 57888887753321 111111111 1357999876432 2244
Q ss_pred HHHHHccCCCCEEE
Q 027441 209 QEAQRVLKPRGEEQ 222 (223)
Q Consensus 209 ~e~~rvLkpgG~lv 222 (223)
.+....+|||++|+
T Consensus 325 ~e~~~~MKpGAiLI 338 (476)
T PTZ00075 325 LEHMRRMKNNAIVG 338 (476)
T ss_pred HHHHhccCCCcEEE
Confidence 46778899999986
No 397
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=38.98 E-value=44 Score=29.33 Aligned_cols=81 Identities=11% Similarity=0.100 Sum_probs=46.2
Q ss_pred CCCeEEEECCcc-hH-HHHHhc---CceEEEecCCCCCc-EEEccCCCCCCCCCceeEEEEcccccCCCHHHHHHHHHHc
Q 027441 141 PSLVIADFGCGD-AR-LAKSVK---NKVFSFDLVSNDPS-VIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQRV 214 (223)
Q Consensus 141 ~~~~ILDiGcG~-G~-~a~~la---~~v~gvDis~~~~~-~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~l~e~~rv 214 (223)
.+.+|.=||+|. |. ++..+. .+|+++|.++.... +.. -...+.-.-...|+|+.+..+..-....+..++...
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~-~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~ 223 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLT-YKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDH 223 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhh-ccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhc
Confidence 457899999997 32 444443 57999998763211 110 001111011346888866654422223455677788
Q ss_pred cCCCCEEE
Q 027441 215 LKPRGEEQ 222 (223)
Q Consensus 215 LkpgG~lv 222 (223)
++||.+|+
T Consensus 224 mk~gavlI 231 (330)
T PRK12480 224 VKKGAILV 231 (330)
T ss_pred CCCCcEEE
Confidence 89988775
No 398
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=38.76 E-value=61 Score=27.77 Aligned_cols=78 Identities=17% Similarity=0.179 Sum_probs=43.2
Q ss_pred CCCCeEEEECCcc-hHHHHHhc----CceEEEecCCCCCcEE-------EccCCCCCC-----CCCceeEEEEcccccCC
Q 027441 140 SPSLVIADFGCGD-ARLAKSVK----NKVFSFDLVSNDPSVI-------ACDMSNTPL-----NSSSVDVAVFCLSLMGI 202 (223)
Q Consensus 140 ~~~~~ILDiGcG~-G~~a~~la----~~v~gvDis~~~~~~~-------~~d~~~lp~-----~~~sfD~Vi~~~~l~~~ 202 (223)
.++.+||=.|||. |..+..++ .+|++++.++.+..+. ..+.....+ ....+|+|+.+..
T Consensus 162 ~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g---- 237 (333)
T cd08296 162 KPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATAP---- 237 (333)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECCC----
Confidence 3567888888643 33333333 4678887765222110 111111000 0124788886431
Q ss_pred CHHHHHHHHHHccCCCCEEE
Q 027441 203 NFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 203 d~~~~l~e~~rvLkpgG~lv 222 (223)
....+..+.+.|+++|.++
T Consensus 238 -~~~~~~~~~~~l~~~G~~v 256 (333)
T cd08296 238 -NAKAISALVGGLAPRGKLL 256 (333)
T ss_pred -chHHHHHHHHHcccCCEEE
Confidence 1457888899999999986
No 399
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.57 E-value=60 Score=29.22 Aligned_cols=20 Identities=35% Similarity=0.680 Sum_probs=17.7
Q ss_pred CCCeEEEECCcchHHHHHhc
Q 027441 141 PSLVIADFGCGDARLAKSVK 160 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la 160 (223)
+....+++|||-|.++.+++
T Consensus 182 ~~~~~vEFGAGrg~Ls~~vs 201 (420)
T KOG2811|consen 182 PSSCFVEFGAGRGELSRWVS 201 (420)
T ss_pred CcceEEEecCCchHHHHHHH
Confidence 34789999999999999987
No 400
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=38.39 E-value=1.3e+02 Score=26.25 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=43.9
Q ss_pred CCCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcE-------EEccCCC----C-----CCCCCceeEEEEcc
Q 027441 140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSV-------IACDMSN----T-----PLNSSSVDVAVFCL 197 (223)
Q Consensus 140 ~~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~-------~~~d~~~----l-----p~~~~sfD~Vi~~~ 197 (223)
.++.+||=+|+|. |.++..++ . +|+++|.++....+ ...+... + .+..+.+|+|+-+.
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~ 265 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECT 265 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEECC
Confidence 4678888888753 33333333 3 68888877632211 0111110 0 01123578887543
Q ss_pred cccCCCHHHHHHHHHHccCCC-CEEEc
Q 027441 198 SLMGINFPNYLQEAQRVLKPR-GEEQI 223 (223)
Q Consensus 198 ~l~~~d~~~~l~e~~rvLkpg-G~lvi 223 (223)
. -...+..+.+.+++| |.+++
T Consensus 266 G-----~~~~~~~~~~~~~~~~g~~v~ 287 (369)
T cd08301 266 G-----NIDAMISAFECVHDGWGVTVL 287 (369)
T ss_pred C-----ChHHHHHHHHHhhcCCCEEEE
Confidence 2 145777788899996 88763
No 401
>COG0416 PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]
Probab=38.34 E-value=30 Score=30.55 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=17.9
Q ss_pred EEccCCCCCCCCCceeEEEEcccc
Q 027441 176 IACDMSNTPLNSSSVDVAVFCLSL 199 (223)
Q Consensus 176 ~~~d~~~lp~~~~sfD~Vi~~~~l 199 (223)
+.++++.-.+-++.+|+|+|-...
T Consensus 209 F~GnvEg~di~~G~~DVvV~DGFt 232 (338)
T COG0416 209 FIGNVEGRDILDGTVDVVVTDGFT 232 (338)
T ss_pred eeeeccccccccCCCCEEEeCCcc
Confidence 466666666668999999987653
No 402
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=38.13 E-value=62 Score=27.98 Aligned_cols=81 Identities=11% Similarity=0.067 Sum_probs=40.2
Q ss_pred CCCeEEEECCcc-hHH-HHHhc----CceEEEecCCCCCc-------EEEccCCCCCCCCCceeEEEEcccccCCCHHHH
Q 027441 141 PSLVIADFGCGD-ARL-AKSVK----NKVFSFDLVSNDPS-------VIACDMSNTPLNSSSVDVAVFCLSLMGINFPNY 207 (223)
Q Consensus 141 ~~~~ILDiGcG~-G~~-a~~la----~~v~gvDis~~~~~-------~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~ 207 (223)
++.+|+=+|+|. |.. +..+. ..|+.+|.++.... ....+..++.-.-..+|+|+++....+. ...
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~--~~~ 254 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY--AKI 254 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch--HHH
Confidence 578999999976 332 22222 36778887752210 0111111111001347999988775543 233
Q ss_pred HHHHHHccCCCCEEEc
Q 027441 208 LQEAQRVLKPRGEEQI 223 (223)
Q Consensus 208 l~e~~rvLkpgG~lvi 223 (223)
+..+......+|.++|
T Consensus 255 ~~~~~~~~~~~~~~vi 270 (311)
T cd05213 255 VERAMKKRSGKPRLIV 270 (311)
T ss_pred HHHHHhhCCCCCeEEE
Confidence 3333333322455553
No 403
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.81 E-value=98 Score=25.45 Aligned_cols=65 Identities=18% Similarity=0.126 Sum_probs=42.2
Q ss_pred CCCeEEEECCc-chHH-HHHh--cCceEEEecCCCCCcEEEccC---CCCCCCCCceeEEEEcccccCCCHH
Q 027441 141 PSLVIADFGCG-DARL-AKSV--KNKVFSFDLVSNDPSVIACDM---SNTPLNSSSVDVAVFCLSLMGINFP 205 (223)
Q Consensus 141 ~~~~ILDiGcG-~G~~-a~~l--a~~v~gvDis~~~~~~~~~d~---~~lp~~~~sfD~Vi~~~~l~~~d~~ 205 (223)
....||-+|.= +|.+ +..| +.+|+.+|+.+..-.++..++ ..+-+..+.+|+|+-...+-.+.|+
T Consensus 44 E~~~vli~G~YltG~~~a~~Ls~~~~vtv~Di~p~~r~~lp~~v~Fr~~~~~~~G~~DlivDlTGlGG~~Pe 115 (254)
T COG4017 44 EFKEVLIFGVYLTGNYTAQMLSKADKVTVVDIHPFMRGFLPNNVKFRNLLKFIRGEVDLIVDLTGLGGIEPE 115 (254)
T ss_pred CcceEEEEEeeehhHHHHHHhcccceEEEecCCHHHHhcCCCCccHhhhcCCCCCceeEEEeccccCCCCHH
Confidence 56789999864 5654 4444 368999999983222222222 1234557889999988887776654
No 404
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=36.99 E-value=1.3e+02 Score=21.13 Aligned_cols=24 Identities=8% Similarity=0.056 Sum_probs=14.5
Q ss_pred EEEcccccCCCHHHHHHHHHHccC
Q 027441 193 AVFCLSLMGINFPNYLQEAQRVLK 216 (223)
Q Consensus 193 Vi~~~~l~~~d~~~~l~e~~rvLk 216 (223)
+.....+..++...+.+++..+|+
T Consensus 70 ~~~~~llt~~~~~~~~e~i~~~l~ 93 (94)
T PRK10310 70 VHGMPFVSGVGIEALQNKILTILQ 93 (94)
T ss_pred EEEeecccccCHHHHHHHHHHHHc
Confidence 333334444567788888777765
No 405
>PRK10458 DNA cytosine methylase; Provisional
Probab=36.92 E-value=84 Score=29.12 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=23.5
Q ss_pred CCeEEEECCcchHHHHHhc----CceEEEecCC
Q 027441 142 SLVIADFGCGDARLAKSVK----NKVFSFDLVS 170 (223)
Q Consensus 142 ~~~ILDiGcG~G~~a~~la----~~v~gvDis~ 170 (223)
..+++|+=||.|.+...+. ..|.++|+.+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~ 120 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNK 120 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechH
Confidence 4689999999999887765 3567889886
No 406
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=36.85 E-value=1.4e+02 Score=25.19 Aligned_cols=75 Identities=23% Similarity=0.252 Sum_probs=42.9
Q ss_pred CCCCeEEEECCcchHHHHHh---c----CceEEEecCCCCCcEE-------EccCCCCCCCCCceeEEEEcccccCCCHH
Q 027441 140 SPSLVIADFGCGDARLAKSV---K----NKVFSFDLVSNDPSVI-------ACDMSNTPLNSSSVDVAVFCLSLMGINFP 205 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~l---a----~~v~gvDis~~~~~~~-------~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~ 205 (223)
.++.+||=.|+| .++..+ + .+|++++.++.+..+. ..+... ......+|+|+.+.. -.
T Consensus 154 ~~g~~vlV~g~g--~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~d~vid~~g-----~~ 225 (319)
T cd08242 154 TPGDKVAVLGDG--KLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEA-ESEGGGFDVVVEATG-----SP 225 (319)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccc-cccCCCCCEEEECCC-----Ch
Confidence 366788888764 333333 2 3677776654222111 111111 123456899987643 14
Q ss_pred HHHHHHHHccCCCCEEE
Q 027441 206 NYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 206 ~~l~e~~rvLkpgG~lv 222 (223)
..+..+.+.|+++|.++
T Consensus 226 ~~~~~~~~~l~~~g~~v 242 (319)
T cd08242 226 SGLELALRLVRPRGTVV 242 (319)
T ss_pred HHHHHHHHHhhcCCEEE
Confidence 56778888999999886
No 407
>PRK13243 glyoxylate reductase; Reviewed
Probab=36.65 E-value=36 Score=29.86 Aligned_cols=82 Identities=15% Similarity=0.205 Sum_probs=44.7
Q ss_pred CCCeEEEECCcc-hH-HHHHhc---CceEEEecCCCCCcEEEccCCCCCCC--CCceeEEEEcccccCCCHHHHHHHHHH
Q 027441 141 PSLVIADFGCGD-AR-LAKSVK---NKVFSFDLVSNDPSVIACDMSNTPLN--SSSVDVAVFCLSLMGINFPNYLQEAQR 213 (223)
Q Consensus 141 ~~~~ILDiGcG~-G~-~a~~la---~~v~gvDis~~~~~~~~~d~~~lp~~--~~sfD~Vi~~~~l~~~d~~~~l~e~~r 213 (223)
.+.+|.=||+|. |. ++..+. .+|+++|.++.........+....+. -...|+|+.+..+.---...+-.+...
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~ 228 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLK 228 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHh
Confidence 578999999987 43 444443 47999998753211100001000111 134688887766532111122245667
Q ss_pred ccCCCCEEE
Q 027441 214 VLKPRGEEQ 222 (223)
Q Consensus 214 vLkpgG~lv 222 (223)
.++||.+|+
T Consensus 229 ~mk~ga~lI 237 (333)
T PRK13243 229 LMKPTAILV 237 (333)
T ss_pred cCCCCeEEE
Confidence 788888875
No 408
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=36.57 E-value=2e+02 Score=24.25 Aligned_cols=71 Identities=17% Similarity=0.183 Sum_probs=44.2
Q ss_pred HHHHHHHhccCCCCeEEEECCc-chH-HHHHhc--CceEEEecCC-------CCCcEEEccCCCCCCCCCceeEEEEccc
Q 027441 130 NIIVKWLKDHSPSLVIADFGCG-DAR-LAKSVK--NKVFSFDLVS-------NDPSVIACDMSNTPLNSSSVDVAVFCLS 198 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG-~G~-~a~~la--~~v~gvDis~-------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~ 198 (223)
+.+..+|... ....+|=+|.= +|. +|..|. .+|+.+|+.| .++.|... ..-....+|+|+-...
T Consensus 31 ~ai~~~le~~-~~k~~lI~G~YltG~~iA~~L~~~~eV~lvDI~p~lk~ll~~~i~F~~~----~~~~~~~~DlIID~TG 105 (252)
T PF06690_consen 31 NAIKYWLEGE-EFKQALIFGAYLTGNFIASALSKKCEVTLVDIHPHLKELLNENIKFMEF----RNGLEGNPDLIIDTTG 105 (252)
T ss_pred HHHHHHhccc-ccceEEEEEEEeehHHHHHHhccCceEEEEeCcHHHHHHhcCCCceeec----cCCCCCCCCEEEECCC
Confidence 3455666544 34588888832 232 344454 3899999998 56666522 1112357899998888
Q ss_pred ccCCCHH
Q 027441 199 LMGINFP 205 (223)
Q Consensus 199 l~~~d~~ 205 (223)
+-++++.
T Consensus 106 lGGv~~~ 112 (252)
T PF06690_consen 106 LGGVDPD 112 (252)
T ss_pred CCCCCHH
Confidence 7777543
No 409
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=36.11 E-value=2.6e+02 Score=23.78 Aligned_cols=76 Identities=13% Similarity=0.139 Sum_probs=42.7
Q ss_pred CCCCeEEEECCc--chHHHHHhc----CceEEEecCCC-------CCcEEEccCCC-C-----CCCCCceeEEEEccccc
Q 027441 140 SPSLVIADFGCG--DARLAKSVK----NKVFSFDLVSN-------DPSVIACDMSN-T-----PLNSSSVDVAVFCLSLM 200 (223)
Q Consensus 140 ~~~~~ILDiGcG--~G~~a~~la----~~v~gvDis~~-------~~~~~~~d~~~-l-----p~~~~sfD~Vi~~~~l~ 200 (223)
.++.+||=+|+. .|..+..++ ..+++++-+.. .+.++. +... . ......+|+|+.+..
T Consensus 176 ~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~d~vi~~~g-- 252 (350)
T cd08274 176 GAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAAKEEAVRALGADTVI-LRDAPLLADAKALGGEPVDVVADVVG-- 252 (350)
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCchhhHHHHhcCCeEEE-eCCCccHHHHHhhCCCCCcEEEecCC--
Confidence 367889989873 233433333 46777664320 111111 1110 0 012345899986654
Q ss_pred CCCHHHHHHHHHHccCCCCEEE
Q 027441 201 GINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 201 ~~d~~~~l~e~~rvLkpgG~lv 222 (223)
...+..+.+.|+++|.++
T Consensus 253 ----~~~~~~~~~~l~~~G~~v 270 (350)
T cd08274 253 ----GPLFPDLLRLLRPGGRYV 270 (350)
T ss_pred ----HHHHHHHHHHhccCCEEE
Confidence 246788899999999886
No 410
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=35.87 E-value=1.5e+02 Score=26.70 Aligned_cols=92 Identities=14% Similarity=0.070 Sum_probs=51.6
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhcC-ceEEE-ecCC-----------CCC---cEEEccCCCCCCCCCceeEE
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVKN-KVFSF-DLVS-----------NDP---SVIACDMSNTPLNSSSVDVA 193 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la~-~v~gv-Dis~-----------~~~---~~~~~d~~~lp~~~~sfD~V 193 (223)
+.+++++........||=|+=.-|.++..|+. .++.+ |..- ..+ .+...+.. .+++ ..+|+|
T Consensus 33 e~ll~~~~~~~~~~~~~i~nd~fGal~~~l~~~~~~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~-~~~~-~~~d~v 110 (378)
T PRK15001 33 EYLLQQLDDTEIRGPVLILNDAFGALSCALAEHKPYSIGDSYISELATRENLRLNGIDESSVKFLDST-ADYP-QQPGVV 110 (378)
T ss_pred HHHHHHHhhcccCCCEEEEcCchhHHHHHHHhCCCCeeehHHHHHHHHHHHHHHcCCCcccceeeccc-cccc-CCCCEE
Confidence 35566665532224799999999999999882 22222 2110 001 01111111 1222 448988
Q ss_pred EEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 194 VFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 194 i~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
+...-=.--.....+..+.++|.||+.+++
T Consensus 111 l~~~PK~~~~l~~~l~~l~~~l~~~~~ii~ 140 (378)
T PRK15001 111 LIKVPKTLALLEQQLRALRKVVTSDTRIIA 140 (378)
T ss_pred EEEeCCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 865432211334678888999999999763
No 411
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=35.83 E-value=54 Score=28.61 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=37.8
Q ss_pred CCeEEEECCcchHHHHHhc----CceEEEecCC----------CCCcEEEccCCCCCCC---CCceeEEEEcc
Q 027441 142 SLVIADFGCGDARLAKSVK----NKVFSFDLVS----------NDPSVIACDMSNTPLN---SSSVDVAVFCL 197 (223)
Q Consensus 142 ~~~ILDiGcG~G~~a~~la----~~v~gvDis~----------~~~~~~~~d~~~lp~~---~~sfD~Vi~~~ 197 (223)
..+++|+=||.|.+...+. .-+.++|+.+ ....+...|+..+... ...+|+++...
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCC
Confidence 4679999999998776665 3467899987 2245666777544322 11789998653
No 412
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=35.59 E-value=69 Score=29.74 Aligned_cols=78 Identities=12% Similarity=0.120 Sum_probs=48.7
Q ss_pred CCCeEEEECCcchHHHHHhcCceEEEecC-----------CCCC------cEEEccCCCCCCCCCceeEEEEcccccCCC
Q 027441 141 PSLVIADFGCGDARLAKSVKNKVFSFDLV-----------SNDP------SVIACDMSNTPLNSSSVDVAVFCLSLMGIN 203 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la~~v~gvDis-----------~~~~------~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d 203 (223)
.+.+|+=||||.=..+..+.-++.|++.. .... .|.+.++.+. -...|+|++..-.. .
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea---~~~ADvVviLlPDt-~- 109 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEEL---IPQADLVINLTPDK-Q- 109 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHH---HHhCCEEEEcCChH-H-
Confidence 57899999999866666666555555554 1111 1111111110 14568888776655 2
Q ss_pred HHHHHHHHHHccCCCCEEEc
Q 027441 204 FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 204 ~~~~l~e~~rvLkpgG~lvi 223 (223)
...+..++...|+||..|.+
T Consensus 110 q~~v~~~i~p~LK~Ga~L~f 129 (487)
T PRK05225 110 HSDVVRAVQPLMKQGAALGY 129 (487)
T ss_pred HHHHHHHHHhhCCCCCEEEe
Confidence 44666899999999999874
No 413
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=35.46 E-value=32 Score=29.98 Aligned_cols=19 Identities=37% Similarity=0.420 Sum_probs=17.0
Q ss_pred HHHHHHHHHccCCCCEEEc
Q 027441 205 PNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 205 ~~~l~e~~rvLkpgG~lvi 223 (223)
..+|..+..+|+|||.|+|
T Consensus 220 ~~~L~~~~~~L~~gGrl~V 238 (305)
T TIGR00006 220 EEALQFAPNLLAPGGRLSI 238 (305)
T ss_pred HHHHHHHHHHhcCCCEEEE
Confidence 4889999999999999985
No 414
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=34.33 E-value=70 Score=27.84 Aligned_cols=82 Identities=13% Similarity=0.006 Sum_probs=45.7
Q ss_pred CCCeEEEECCcc-hH-HHHHhc---CceEEEecCCCCCc-EEEc-cCCCCCCCCCceeEEEEcccccCCCHHHHHHHHHH
Q 027441 141 PSLVIADFGCGD-AR-LAKSVK---NKVFSFDLVSNDPS-VIAC-DMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQR 213 (223)
Q Consensus 141 ~~~~ILDiGcG~-G~-~a~~la---~~v~gvDis~~~~~-~~~~-d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~l~e~~r 213 (223)
.+.+|.=||+|. |. .+..+. .+|+++|.+..... +... ....+.---...|+|+++..+.--....+-.+...
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~ 214 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLE 214 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHh
Confidence 467899999996 53 444444 47889997653321 1111 11111100134588887666432111233356778
Q ss_pred ccCCCCEEE
Q 027441 214 VLKPRGEEQ 222 (223)
Q Consensus 214 vLkpgG~lv 222 (223)
.|+||.+|+
T Consensus 215 ~mk~ga~lI 223 (312)
T PRK15469 215 QLPDGAYLL 223 (312)
T ss_pred cCCCCcEEE
Confidence 899998876
No 415
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=34.32 E-value=2.7e+02 Score=23.04 Aligned_cols=76 Identities=14% Similarity=0.097 Sum_probs=44.5
Q ss_pred CCCCeEEEECCc--chHHHHHhc----CceEEEecCCCC--------CcEEEccCCCC-----CCCCCceeEEEEccccc
Q 027441 140 SPSLVIADFGCG--DARLAKSVK----NKVFSFDLVSND--------PSVIACDMSNT-----PLNSSSVDVAVFCLSLM 200 (223)
Q Consensus 140 ~~~~~ILDiGcG--~G~~a~~la----~~v~gvDis~~~--------~~~~~~d~~~l-----p~~~~sfD~Vi~~~~l~ 200 (223)
.++..||=.|++ .|..+..++ ..|+++..++.. +..+..+-..+ .+ ...+|+|+.+..
T Consensus 141 ~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~~~d~vl~~~~-- 217 (320)
T cd08243 141 QPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKELGADEVVIDDGAIAEQLRAA-PGGFDKVLELVG-- 217 (320)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEecCccHHHHHHHh-CCCceEEEECCC--
Confidence 356788888863 344544444 467777655421 11111111110 12 356899986654
Q ss_pred CCCHHHHHHHHHHccCCCCEEE
Q 027441 201 GINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 201 ~~d~~~~l~e~~rvLkpgG~lv 222 (223)
...+.++.+.|+++|.++
T Consensus 218 ----~~~~~~~~~~l~~~g~~v 235 (320)
T cd08243 218 ----TATLKDSLRHLRPGGIVC 235 (320)
T ss_pred ----hHHHHHHHHHhccCCEEE
Confidence 346788889999999886
No 416
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=33.93 E-value=1.4e+02 Score=20.49 Aligned_cols=13 Identities=8% Similarity=0.074 Sum_probs=10.2
Q ss_pred CCeEEEECCcchH
Q 027441 142 SLVIADFGCGDAR 154 (223)
Q Consensus 142 ~~~ILDiGcG~G~ 154 (223)
..+||=|||.+|+
T Consensus 39 pK~VLViGaStGy 51 (78)
T PF12242_consen 39 PKKVLVIGASTGY 51 (78)
T ss_dssp -SEEEEES-SSHH
T ss_pred CceEEEEecCCcc
Confidence 3789999999997
No 417
>cd00518 H2MP Hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). These enzymes belong to the peptidase family M52. Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE, the large subunit of hydrogenase 3. This cleavage is nickel dependent. This CD also includes such hydrogenase-processing proteins as HydD, HupW, and HoxW, as well as, proteins of the F420-reducing hydrogenase of methanogens (e.g., FrcD). Also included, is the Pyrococcus furiosus FrxA protein, a bifunctional endopeptidase/ sulfhydrogenase found in NADP-reducing hyperthermophiles.The Pyrococcus FrxA is not related to those found in Helicobacter pylori.
Probab=33.81 E-value=2e+02 Score=21.42 Aligned_cols=83 Identities=18% Similarity=0.230 Sum_probs=45.5
Q ss_pred HHHHHhcc--CCCCeEEEECCcchHHHHHhc--CceEEEecCCC---CCcEEEccCCCCCCCCCceeEEEEcccccCCCH
Q 027441 132 IVKWLKDH--SPSLVIADFGCGDARLAKSVK--NKVFSFDLVSN---DPSVIACDMSNTPLNSSSVDVAVFCLSLMGINF 204 (223)
Q Consensus 132 i~~~l~~~--~~~~~ILDiGcG~G~~a~~la--~~v~gvDis~~---~~~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~ 204 (223)
+.+.|... +++..++|.|++.-.++..+. ..++-+|.... .-.+...+...++- . .. ..+.|++.+
T Consensus 19 v~~~L~~~~~~~~v~~id~gt~~~~l~~~l~~~d~viiVDA~~~~~~pG~i~~~~~~~~~~--~----~~-~~s~H~~~l 91 (139)
T cd00518 19 VAERLEERYLPPGVEVIDGGTLGLELLDLLEGADRVIIVDAVDSGGEPGTVRRLEPEELPA--Y----LS-ALSTHQLGL 91 (139)
T ss_pred HHHHHHhcCCCCCeEEEECCCCHHHHHHHHhcCCeEEEEECccCCCCCCeEEEEchhhccc--c----cC-CCCCccCCH
Confidence 34444433 356779999988767777776 57888887642 12223323222221 0 00 145677788
Q ss_pred HHHHHHHHHc--cCCCCEE
Q 027441 205 PNYLQEAQRV--LKPRGEE 221 (223)
Q Consensus 205 ~~~l~e~~rv--LkpgG~l 221 (223)
..++.-+... ..|..++
T Consensus 92 ~~~l~~~~~~~~~~~~~~l 110 (139)
T cd00518 92 AELLALLRLLGGLPPEVVL 110 (139)
T ss_pred HHHHHHHHHhCCCCCeEEE
Confidence 8777766654 3344443
No 418
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=33.71 E-value=39 Score=29.61 Aligned_cols=74 Identities=20% Similarity=0.250 Sum_probs=46.7
Q ss_pred CCCeEEEECCcchHHHHHh-c----CceEEEecCCC------------CC----cEEEccCCCCCCCCCceeEEEEcccc
Q 027441 141 PSLVIADFGCGDARLAKSV-K----NKVFSFDLVSN------------DP----SVIACDMSNTPLNSSSVDVAVFCLSL 199 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~l-a----~~v~gvDis~~------------~~----~~~~~d~~~lp~~~~sfD~Vi~~~~l 199 (223)
.+..|.|+=+|-|+++..+ . ..|+++|++|. ++ .++.+|- ..+-++...|.|...+.-
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~-R~~~~~~~AdrVnLGLlP 272 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDN-RNPKPRLRADRVNLGLLP 272 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccc-cccCccccchheeecccc
Confidence 5688999999999988733 2 57999999981 11 1223333 334456778888766554
Q ss_pred cCC-CHHHHHHHHHHccCC-CC
Q 027441 200 MGI-NFPNYLQEAQRVLKP-RG 219 (223)
Q Consensus 200 ~~~-d~~~~l~e~~rvLkp-gG 219 (223)
..- .|+.+. .+|+| ||
T Consensus 273 Sse~~W~~A~----k~Lk~egg 290 (351)
T KOG1227|consen 273 SSEQGWPTAI----KALKPEGG 290 (351)
T ss_pred ccccchHHHH----HHhhhcCC
Confidence 332 455544 44666 44
No 419
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=32.47 E-value=40 Score=29.44 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=17.8
Q ss_pred HHHHHHHHHHccCCCCEEEc
Q 027441 204 FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 204 ~~~~l~e~~rvLkpgG~lvi 223 (223)
...+|..+.++|+|||.|+|
T Consensus 223 L~~~L~~a~~~L~~gGRl~V 242 (314)
T COG0275 223 LEEALEAALDLLKPGGRLAV 242 (314)
T ss_pred HHHHHHHHHHhhCCCcEEEE
Confidence 45899999999999999985
No 420
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=32.32 E-value=73 Score=27.30 Aligned_cols=78 Identities=15% Similarity=0.212 Sum_probs=42.9
Q ss_pred CeEEEECCcch--HHHHHhc--C---ceEEEecCCCCCcEEE-cc----C-CCCCCCCCceeEEEEcccccCCCHHHHHH
Q 027441 143 LVIADFGCGDA--RLAKSVK--N---KVFSFDLVSNDPSVIA-CD----M-SNTPLNSSSVDVAVFCLSLMGINFPNYLQ 209 (223)
Q Consensus 143 ~~ILDiGcG~G--~~a~~la--~---~v~gvDis~~~~~~~~-~d----~-~~lp~~~~sfD~Vi~~~~l~~~d~~~~l~ 209 (223)
.+|.=||+|.- .++..|. . .|+++|.++....... .. . ....-.-...|+|+.+..... ...++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~--~~~v~~ 84 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGA--SGAVAA 84 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHH--HHHHHH
Confidence 56888999862 3444443 2 6888998763211100 00 0 111101134788887765432 245667
Q ss_pred HHHHccCCCCEEE
Q 027441 210 EAQRVLKPRGEEQ 222 (223)
Q Consensus 210 e~~rvLkpgG~lv 222 (223)
++...+++|++++
T Consensus 85 ~l~~~l~~~~iv~ 97 (307)
T PRK07502 85 EIAPHLKPGAIVT 97 (307)
T ss_pred HHHhhCCCCCEEE
Confidence 7777788887664
No 421
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=31.75 E-value=76 Score=27.34 Aligned_cols=78 Identities=22% Similarity=0.294 Sum_probs=43.1
Q ss_pred CCCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcE-------EEccCCCCC--------CCCCceeEEEEccc
Q 027441 140 SPSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSV-------IACDMSNTP--------LNSSSVDVAVFCLS 198 (223)
Q Consensus 140 ~~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~-------~~~d~~~lp--------~~~~sfD~Vi~~~~ 198 (223)
.++.+||=.|+|. |..+..++ . .|++++.++....+ ...+..... .....+|+|+-+..
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g 250 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAG 250 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCC
Confidence 3567788888642 22333333 3 67777766522111 011111111 11234899886543
Q ss_pred ccCCCHHHHHHHHHHccCCCCEEE
Q 027441 199 LMGINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 199 l~~~d~~~~l~e~~rvLkpgG~lv 222 (223)
. ...+..+.+.|+++|.++
T Consensus 251 ~-----~~~~~~~~~~l~~~G~~v 269 (351)
T cd08233 251 V-----QATLDTAIDALRPRGTAV 269 (351)
T ss_pred C-----HHHHHHHHHhccCCCEEE
Confidence 1 457788899999999886
No 422
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=31.00 E-value=2.9e+02 Score=22.50 Aligned_cols=76 Identities=14% Similarity=0.189 Sum_probs=41.5
Q ss_pred CCCCeEEEECCc--chHHHHHhc----CceEEEecCCCCCc---------EEEccCCCCC--CCCCceeEEEEcccccCC
Q 027441 140 SPSLVIADFGCG--DARLAKSVK----NKVFSFDLVSNDPS---------VIACDMSNTP--LNSSSVDVAVFCLSLMGI 202 (223)
Q Consensus 140 ~~~~~ILDiGcG--~G~~a~~la----~~v~gvDis~~~~~---------~~~~d~~~lp--~~~~sfD~Vi~~~~l~~~ 202 (223)
.++.+||=.|+. .|..+..++ ..|+.++.+. ... ++......+. .....+|+++.+..
T Consensus 143 ~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~v~~~~~---- 217 (309)
T cd05289 143 KAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRSLGADEVIDYTKGDFERAAAPGGVDAVLDTVG---- 217 (309)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHHcCCCEEEeCCCCchhhccCCCCceEEEECCc----
Confidence 366788888862 233333333 4566665443 211 1111111111 23345888886544
Q ss_pred CHHHHHHHHHHccCCCCEEE
Q 027441 203 NFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 203 d~~~~l~e~~rvLkpgG~lv 222 (223)
...+..+.+.|+++|.++
T Consensus 218 --~~~~~~~~~~l~~~g~~v 235 (309)
T cd05289 218 --GETLARSLALVKPGGRLV 235 (309)
T ss_pred --hHHHHHHHHHHhcCcEEE
Confidence 236778889999999886
No 423
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=30.89 E-value=2.5e+02 Score=24.80 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=20.2
Q ss_pred HHHHHHhccCCCCeEEEECCcchHHHHHhc
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDARLAKSVK 160 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~~a~~la 160 (223)
.+..+|........|+.+|||.-.+...|.
T Consensus 77 ~v~~Fl~~~~~~~qivnLGcG~D~l~frL~ 106 (335)
T KOG2918|consen 77 AVRAFLEQTDGKKQIVNLGAGFDTLYFRLL 106 (335)
T ss_pred HHHHHHHhcCCceEEEEcCCCccchhhhhh
Confidence 344445444456889999999877666554
No 424
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=30.77 E-value=43 Score=29.06 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=17.0
Q ss_pred HHHHHHHHHccCCCCEEEc
Q 027441 205 PNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 205 ~~~l~e~~rvLkpgG~lvi 223 (223)
..+|..+..+|+|||.|+|
T Consensus 216 ~~~L~~~~~~L~~gGrl~v 234 (296)
T PRK00050 216 ERALEAALDLLKPGGRLAV 234 (296)
T ss_pred HHHHHHHHHHhcCCCEEEE
Confidence 4889999999999999986
No 425
>PRK06701 short chain dehydrogenase; Provisional
Probab=30.01 E-value=1.7e+02 Score=24.64 Aligned_cols=82 Identities=15% Similarity=0.053 Sum_probs=45.8
Q ss_pred CCCeEEEECCcchH---HHHHhc---CceEEEecCC---------------CCCcEEEccCCCCC-----CC-----CCc
Q 027441 141 PSLVIADFGCGDAR---LAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTP-----LN-----SSS 189 (223)
Q Consensus 141 ~~~~ILDiGcG~G~---~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp-----~~-----~~s 189 (223)
.+.+||-.|++.|. ++..|+ .+|+.++... .++.++.+|+.+.. +. -..
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~ 124 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGR 124 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45789999976664 333333 4676665543 13456778876532 10 135
Q ss_pred eeEEEEcccccC----C---C--------------HHHHHHHHHHccCCCCEEE
Q 027441 190 VDVAVFCLSLMG----I---N--------------FPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 190 fD~Vi~~~~l~~----~---d--------------~~~~l~e~~rvLkpgG~lv 222 (223)
+|+||.+....+ + + +-.++..+.+.++++|.|+
T Consensus 125 iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV 178 (290)
T PRK06701 125 LDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAII 178 (290)
T ss_pred CCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEE
Confidence 788886654321 1 1 1145556666667777665
No 426
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=29.04 E-value=1.4e+02 Score=25.17 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=26.3
Q ss_pred HHHHHHHhccCCCCeEEEECCcchHHHHHhc----CceEEEecCC
Q 027441 130 NIIVKWLKDHSPSLVIADFGCGDARLAKSVK----NKVFSFDLVS 170 (223)
Q Consensus 130 ~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la----~~v~gvDis~ 170 (223)
+.|....... ...-|.+||-|+|.++..+. .++..+++.+
T Consensus 40 ~KIvK~A~~~-~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~ 83 (326)
T KOG0821|consen 40 DKIVKKAGNL-TNAYVYEIGPGPGGITRSILNADVARLLVVEKDT 83 (326)
T ss_pred HHHHHhcccc-ccceeEEecCCCCchhHHHHhcchhheeeeeecc
Confidence 4444443333 45789999999999988775 3555555553
No 427
>PRK08324 short chain dehydrogenase; Validated
Probab=28.99 E-value=1.9e+02 Score=27.93 Aligned_cols=83 Identities=22% Similarity=0.208 Sum_probs=49.1
Q ss_pred CCCeEEEECCcchH---HHHHhc---CceEEEecCCC-------------CCcEEEccCCCCC-----CC-----CCcee
Q 027441 141 PSLVIADFGCGDAR---LAKSVK---NKVFSFDLVSN-------------DPSVIACDMSNTP-----LN-----SSSVD 191 (223)
Q Consensus 141 ~~~~ILDiGcG~G~---~a~~la---~~v~gvDis~~-------------~~~~~~~d~~~lp-----~~-----~~sfD 191 (223)
.+.+||=.|++.|. ++..|. .+|+.+|.++. .+.++.+|+.+.. +. .+.+|
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iD 500 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVD 500 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 35789988875543 222333 47888887751 4556777876532 11 23589
Q ss_pred EEEEcccccCC------C--------------HHHHHHHHHHccCC---CCEEEc
Q 027441 192 VAVFCLSLMGI------N--------------FPNYLQEAQRVLKP---RGEEQI 223 (223)
Q Consensus 192 ~Vi~~~~l~~~------d--------------~~~~l~e~~rvLkp---gG~lvi 223 (223)
+|+.+...... + ...++..+.+.+++ ||.+++
T Consensus 501 vvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~ 555 (681)
T PRK08324 501 IVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVF 555 (681)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 99877764322 1 22556666777766 576653
No 428
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=28.94 E-value=69 Score=24.71 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=8.5
Q ss_pred ECCcchHHHHHhcCc
Q 027441 148 FGCGDARLAKSVKNK 162 (223)
Q Consensus 148 iGcG~G~~a~~la~~ 162 (223)
+.||||.-....+.+
T Consensus 61 liCGtGiG~siaANK 75 (144)
T TIGR00689 61 LICGTGIGMSIAANK 75 (144)
T ss_pred EEcCCcHHHHHHHhc
Confidence 457777655555533
No 429
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=28.79 E-value=2e+02 Score=24.96 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=22.7
Q ss_pred CceeEEEEcccccCCCHHHHHHHHHHccC-CCCEEEc
Q 027441 188 SSVDVAVFCLSLMGINFPNYLQEAQRVLK-PRGEEQI 223 (223)
Q Consensus 188 ~sfD~Vi~~~~l~~~d~~~~l~e~~rvLk-pgG~lvi 223 (223)
..+|+|+.+.. ....+..+.+.|+ ++|.+++
T Consensus 252 ~~~d~vid~~g-----~~~~~~~~~~~l~~~~G~~v~ 283 (365)
T cd05279 252 GGVDYAFEVIG-----SADTLKQALDATRLGGGTSVV 283 (365)
T ss_pred CCCcEEEECCC-----CHHHHHHHHHHhccCCCEEEE
Confidence 45898886542 1457778899999 9999863
No 430
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=28.77 E-value=41 Score=25.23 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=13.4
Q ss_pred EECCcch--HHHHHh-------cCceEEEecCC
Q 027441 147 DFGCGDA--RLAKSV-------KNKVFSFDLVS 170 (223)
Q Consensus 147 DiGcG~G--~~a~~l-------a~~v~gvDis~ 170 (223)
|||+..| .....+ ..+|+++|+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p 33 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNP 33 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---H
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCH
Confidence 8999999 443332 15789999987
No 431
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=28.76 E-value=2.6e+02 Score=23.32 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=42.9
Q ss_pred CCCCeEEEECCcc--hHHHHHhc----CceEEEecCCCCCcE-------EEccCCCCC--------CCCCceeEEEEccc
Q 027441 140 SPSLVIADFGCGD--ARLAKSVK----NKVFSFDLVSNDPSV-------IACDMSNTP--------LNSSSVDVAVFCLS 198 (223)
Q Consensus 140 ~~~~~ILDiGcG~--G~~a~~la----~~v~gvDis~~~~~~-------~~~d~~~lp--------~~~~sfD~Vi~~~~ 198 (223)
.++..||=.|++. |..+..++ .+|+.++.++....+ ...+..+.. .....+|+++.+..
T Consensus 165 ~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~g 244 (342)
T cd08266 165 RPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGADYVIDYRKEDFVREVRELTGKRGVDVVVEHVG 244 (342)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHHhCCCCCcEEEECCc
Confidence 3567888888764 33333333 467777665421110 011211110 11246899987655
Q ss_pred ccCCCHHHHHHHHHHccCCCCEEE
Q 027441 199 LMGINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 199 l~~~d~~~~l~e~~rvLkpgG~lv 222 (223)
...+..+.+.|+++|.++
T Consensus 245 ------~~~~~~~~~~l~~~G~~v 262 (342)
T cd08266 245 ------AATWEKSLKSLARGGRLV 262 (342)
T ss_pred ------HHHHHHHHHHhhcCCEEE
Confidence 245677788899999876
No 432
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=28.52 E-value=19 Score=26.06 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=22.0
Q ss_pred CCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEE
Q 027441 186 NSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 186 ~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lv 222 (223)
..+.||+|+-+.. ...+.++..+.++| |||.++
T Consensus 16 ~~~~~D~ViD~~g---~~~~~~~~~~~~~l-~~G~~v 48 (127)
T PF13602_consen 16 GPGGVDVVIDTVG---QTGESLLDASRKLL-PGGRVV 48 (127)
T ss_dssp TTS-EEEEEESS----CCHHHCGGGCCCTE-EEEEEE
T ss_pred CCCCceEEEECCC---CccHHHHHHHHHHC-CCCEEE
Confidence 3578999997665 12345557778888 999875
No 433
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=27.98 E-value=2.3e+02 Score=23.22 Aligned_cols=77 Identities=14% Similarity=0.128 Sum_probs=42.8
Q ss_pred CCCCeEEEECC-c-chHHHHHhc----CceEEEecCCCC--------CcEEE-ccCCCC-----C-CCCCceeEEEEccc
Q 027441 140 SPSLVIADFGC-G-DARLAKSVK----NKVFSFDLVSND--------PSVIA-CDMSNT-----P-LNSSSVDVAVFCLS 198 (223)
Q Consensus 140 ~~~~~ILDiGc-G-~G~~a~~la----~~v~gvDis~~~--------~~~~~-~d~~~l-----p-~~~~sfD~Vi~~~~ 198 (223)
.++..||=.|+ | .|..+..++ ..|++++.++.. +..+. .+...+ . .....+|+|+.+..
T Consensus 135 ~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~ 214 (320)
T cd05286 135 KPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARAAGADHVINYRDEDFVERVREITGGRGVDVVYDGVG 214 (320)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEECCC
Confidence 36678888885 2 344444443 467777655421 11111 110000 0 12346899987544
Q ss_pred ccCCCHHHHHHHHHHccCCCCEEE
Q 027441 199 LMGINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 199 l~~~d~~~~l~e~~rvLkpgG~lv 222 (223)
...+..+.+.|+++|.++
T Consensus 215 ------~~~~~~~~~~l~~~g~~v 232 (320)
T cd05286 215 ------KDTFEGSLDSLRPRGTLV 232 (320)
T ss_pred ------cHhHHHHHHhhccCcEEE
Confidence 246677888999999876
No 434
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=27.49 E-value=3.9e+02 Score=22.83 Aligned_cols=78 Identities=10% Similarity=0.013 Sum_probs=45.1
Q ss_pred CeEEEECCcc--hHHHHHhc---CceEEEecCCCC---------CcEEE-ccCCCC------CCCCCceeEEEEcccccC
Q 027441 143 LVIADFGCGD--ARLAKSVK---NKVFSFDLVSND---------PSVIA-CDMSNT------PLNSSSVDVAVFCLSLMG 201 (223)
Q Consensus 143 ~~ILDiGcG~--G~~a~~la---~~v~gvDis~~~---------~~~~~-~d~~~l------p~~~~sfD~Vi~~~~l~~ 201 (223)
.+|+=+|||. |.++..|. ..|+.++-+... +.+.. +..... +-....||+|+.+-=-+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~- 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY- 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence 4688899985 34566665 357666665311 11110 110111 11124789998765543
Q ss_pred CCHHHHHHHHHHccCCCCEEE
Q 027441 202 INFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 202 ~d~~~~l~e~~rvLkpgG~lv 222 (223)
+...++..+..++.++..++
T Consensus 82 -~~~~al~~l~~~l~~~t~vv 101 (305)
T PRK05708 82 -DAEPAVASLAHRLAPGAELL 101 (305)
T ss_pred -hHHHHHHHHHhhCCCCCEEE
Confidence 34578888899999988765
No 435
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=27.42 E-value=3.2e+02 Score=22.67 Aligned_cols=40 Identities=5% Similarity=-0.068 Sum_probs=22.7
Q ss_pred HHHHHHhccCCCCeEEEECCcchH--HHHHhc-------CceEEEecCC
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDAR--LAKSVK-------NKVFSFDLVS 170 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~--~a~~la-------~~v~gvDis~ 170 (223)
.++.-+..-.....|+++.|+.|. .+..|+ ++++++-..+
T Consensus 31 EfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~ 79 (218)
T PF07279_consen 31 EFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDE 79 (218)
T ss_pred HHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCCh
Confidence 444444443366889999766543 344443 4666665553
No 436
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=27.00 E-value=2e+02 Score=25.16 Aligned_cols=82 Identities=28% Similarity=0.380 Sum_probs=44.6
Q ss_pred CCCeEEEECCcc-hHHHHHhc----C-ceEEEecCCCCCcE------EEccCCCC-------CCCCCceeEEEEcccccC
Q 027441 141 PSLVIADFGCGD-ARLAKSVK----N-KVFSFDLVSNDPSV------IACDMSNT-------PLNSSSVDVAVFCLSLMG 201 (223)
Q Consensus 141 ~~~~ILDiGcG~-G~~a~~la----~-~v~gvDis~~~~~~------~~~d~~~l-------p~~~~sfD~Vi~~~~l~~ 201 (223)
++..||=.|||. |..+..++ . .|+++|.++..... ...+.... .+....+|+|+.+..-.-
T Consensus 176 ~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~ 255 (375)
T cd08282 176 PGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAIPIDFSDGDPVEQILGLEPGGVDRAVDCVGYEA 255 (375)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCeEeccCcccHHHHHHHhhCCCCCEEEECCCCcc
Confidence 566777788763 33333333 2 57777765421100 01122110 011245899987654221
Q ss_pred ------CCHHHHHHHHHHccCCCCEEE
Q 027441 202 ------INFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 202 ------~d~~~~l~e~~rvLkpgG~lv 222 (223)
.+....+.++.++|+++|.++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~g~~~ 282 (375)
T cd08282 256 RDRGGEAQPNLVLNQLIRVTRPGGGIG 282 (375)
T ss_pred cccccccchHHHHHHHHHHhhcCcEEE
Confidence 133456889999999999875
No 437
>PRK06853 indolepyruvate oxidoreductase subunit beta; Reviewed
Probab=26.58 E-value=79 Score=25.27 Aligned_cols=29 Identities=14% Similarity=0.056 Sum_probs=21.2
Q ss_pred CceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 188 ~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
+.+|++++... ..+ ......|+|||++++
T Consensus 67 ~~~D~lva~d~------~~~-~~~~~~lk~gg~ii~ 95 (197)
T PRK06853 67 GKADLLLAFEP------LEA-LRYLPYLKKGGKVVV 95 (197)
T ss_pred CCCCEEEEeCH------HHH-HHHHHhcCCCcEEEE
Confidence 47899998765 333 455667899999975
No 438
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=26.40 E-value=13 Score=34.04 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=27.6
Q ss_pred CCCCeEEEECCcchHHHHHhc---CceEEEecCC
Q 027441 140 SPSLVIADFGCGDARLAKSVK---NKVFSFDLVS 170 (223)
Q Consensus 140 ~~~~~ILDiGcG~G~~a~~la---~~v~gvDis~ 170 (223)
.++..|.|+=||.|.++..++ ..|++.|+++
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNp 281 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNP 281 (495)
T ss_pred CCcchhhhhhcCcCccccchhhcCcEEEecCCCH
Confidence 478899999999999988877 6899999998
No 439
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=26.29 E-value=1.3e+02 Score=26.72 Aligned_cols=36 Identities=11% Similarity=0.236 Sum_probs=20.2
Q ss_pred EEEccCCCCCCC-CCceeEEEEcccccCCCHHHHHHHHH
Q 027441 175 VIACDMSNTPLN-SSSVDVAVFCLSLMGINFPNYLQEAQ 212 (223)
Q Consensus 175 ~~~~d~~~lp~~-~~sfD~Vi~~~~l~~~d~~~~l~e~~ 212 (223)
+...++++.|.. -..||+|+|..- .+...+.+..+.
T Consensus 114 ~h~~kIqd~~~~FYk~F~~iicGLD--sIeaRRwIN~mL 150 (422)
T KOG2015|consen 114 PHRQKIQDKPISFYKRFDLIICGLD--SIEARRWINGML 150 (422)
T ss_pred eeecchhcCCHHHHhhhceEEeccc--chhHHHHHHHHH
Confidence 445666666532 367999998653 233334444443
No 440
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=26.02 E-value=1.3e+02 Score=26.09 Aligned_cols=79 Identities=13% Similarity=0.079 Sum_probs=42.3
Q ss_pred CCCeEEEECCcc-hH-HHHHhc---CceEEEecCCCCC--cEEEccCCCCCCCCCceeEEEEcccccCCCHHHHHHHHHH
Q 027441 141 PSLVIADFGCGD-AR-LAKSVK---NKVFSFDLVSNDP--SVIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQR 213 (223)
Q Consensus 141 ~~~~ILDiGcG~-G~-~a~~la---~~v~gvDis~~~~--~~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~l~e~~r 213 (223)
.+.+|.=||.|. |. ++..+. .+|+++|.+.... .+...++..+ -...|+|+...-+.--....+=.+...
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~el---l~~sDvv~lh~Plt~~T~~li~~~~~~ 220 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEEL---LKTSDIISIHAPLNEKTKNLIAYKELK 220 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHH---hhcCCEEEEeCCCCchhhcccCHHHHH
Confidence 578899999986 54 344333 5899999764221 1111111111 133588776655431111122234456
Q ss_pred ccCCCCEEE
Q 027441 214 VLKPRGEEQ 222 (223)
Q Consensus 214 vLkpgG~lv 222 (223)
.+|||.+|+
T Consensus 221 ~Mk~~a~lI 229 (311)
T PRK08410 221 LLKDGAILI 229 (311)
T ss_pred hCCCCeEEE
Confidence 678888876
No 441
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=25.95 E-value=80 Score=25.13 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=8.7
Q ss_pred ECCcchHHHHHhcCc
Q 027441 148 FGCGDARLAKSVKNK 162 (223)
Q Consensus 148 iGcG~G~~a~~la~~ 162 (223)
+-||||.-....+.+
T Consensus 63 liCGTGiG~siaANK 77 (171)
T PRK08622 63 CICGTGVGISNAVNK 77 (171)
T ss_pred EEcCCcHHHHHHHhc
Confidence 457777655555543
No 442
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.64 E-value=3e+02 Score=21.83 Aligned_cols=83 Identities=16% Similarity=0.063 Sum_probs=45.8
Q ss_pred CCCeEEEECCcchH---HHHHhc---CceEEEecCCC-------------CCcEEEccCCCCC-----C-----CCCcee
Q 027441 141 PSLVIADFGCGDAR---LAKSVK---NKVFSFDLVSN-------------DPSVIACDMSNTP-----L-----NSSSVD 191 (223)
Q Consensus 141 ~~~~ILDiGcG~G~---~a~~la---~~v~gvDis~~-------------~~~~~~~d~~~lp-----~-----~~~sfD 191 (223)
.+.+||-.|++.|. ++..+. ..|++++-++. ++.++.+|+.+.. + .-+.+|
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 83 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAID 83 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 35689999986554 222332 46777776541 3566777776532 0 013468
Q ss_pred EEEEcccccCC----C--------------HHHHHHHHHHccCCCCEEEc
Q 027441 192 VAVFCLSLMGI----N--------------FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 192 ~Vi~~~~l~~~----d--------------~~~~l~e~~rvLkpgG~lvi 223 (223)
.|+.+...... + +..++..+.+.++++|.+++
T Consensus 84 ~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~ 133 (238)
T PRK05786 84 GLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVL 133 (238)
T ss_pred EEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEE
Confidence 77766543211 1 11345556666777777653
No 443
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=25.64 E-value=36 Score=29.77 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=17.1
Q ss_pred HHHHHHHHHccCCCCEEEc
Q 027441 205 PNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 205 ~~~l~e~~rvLkpgG~lvi 223 (223)
..+|..+..+|+|||.|+|
T Consensus 221 ~~~L~~a~~~L~~gGrl~V 239 (310)
T PF01795_consen 221 ERGLEAAPDLLKPGGRLVV 239 (310)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCcEEEE
Confidence 4889999999999999986
No 444
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=25.63 E-value=2.4e+02 Score=23.62 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=23.1
Q ss_pred CCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEE
Q 027441 187 SSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 187 ~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lv 222 (223)
...+|+++.+.. ...+..+.+.|.++|.++
T Consensus 208 ~~~~d~~i~~~~------~~~~~~~~~~l~~~g~~i 237 (334)
T PTZ00354 208 EKGVNLVLDCVG------GSYLSETAEVLAVDGKWI 237 (334)
T ss_pred CCCceEEEECCc------hHHHHHHHHHhccCCeEE
Confidence 346899987654 457778889999999886
No 445
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=25.05 E-value=1.1e+02 Score=26.82 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=26.1
Q ss_pred CCCeEEEECCcchHHHHHhc---CceEEEecCC
Q 027441 141 PSLVIADFGCGDARLAKSVK---NKVFSFDLVS 170 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la---~~v~gvDis~ 170 (223)
++.+|.-+|+|......+|. .+|.+||+++
T Consensus 63 ~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ 95 (414)
T COG5379 63 IGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNP 95 (414)
T ss_pred CCcEEEEecCCcchHHHHhhcCCceeEEEeCCH
Confidence 78899999999887777776 6899999998
No 446
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=25.01 E-value=34 Score=28.65 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=33.0
Q ss_pred HHHHHHHHhccCCCCeEEEECCcchHHHHHhc-----CceEEEecCC
Q 027441 129 VNIIVKWLKDHSPSLVIADFGCGDARLAKSVK-----NKVFSFDLVS 170 (223)
Q Consensus 129 ~~~i~~~l~~~~~~~~ILDiGcG~G~~a~~la-----~~v~gvDis~ 170 (223)
++.+++++.+. ++...+|.--|.|..+..+. ..++++|-.|
T Consensus 32 ~devl~~lspv-~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP 77 (303)
T KOG2782|consen 32 LDEVLDILSPV-RGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDP 77 (303)
T ss_pred hhhHHHHcCCC-CCceEEEEeccCCcchHHHHHhCcHhhhhhhccCh
Confidence 46777788776 78999999999999888776 3577888776
No 447
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=25.00 E-value=98 Score=24.06 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=8.5
Q ss_pred ECCcchHHHHHhcCc
Q 027441 148 FGCGDARLAKSVKNK 162 (223)
Q Consensus 148 iGcG~G~~a~~la~~ 162 (223)
+-||||.-....+.+
T Consensus 67 liCGtGiG~siaANK 81 (151)
T PTZ00215 67 LVCGSGIGISIAANK 81 (151)
T ss_pred EEcCCcHHHHHHHhc
Confidence 457777655555533
No 448
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=24.99 E-value=34 Score=27.33 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=21.3
Q ss_pred CceeEEEEcccccCCC-----HHHHHHHHHHccCCCCEEEc
Q 027441 188 SSVDVAVFCLSLMGIN-----FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 188 ~sfD~Vi~~~~l~~~d-----~~~~l~e~~rvLkpgG~lvi 223 (223)
..||+||.+.+-.-.- .+..++.+.+..+.||-|++
T Consensus 66 ~~yD~vIl~dv~~~~ll~~~~~~~~~~~l~~yV~~GGgLlm 106 (177)
T PF07090_consen 66 NRYDVVILSDVPANSLLKSRRSPNQLELLADYVRDGGGLLM 106 (177)
T ss_dssp CT-SEEEEES--HHHHHT----HHHHHHHHHHHHTT-EEEE
T ss_pred hcCCEEEEeCCCchhcccccCCHHHHHHHHHHHHhCCEEEE
Confidence 6799999877643221 45667777777777777653
No 449
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=24.65 E-value=4e+02 Score=21.94 Aligned_cols=74 Identities=19% Similarity=0.183 Sum_probs=42.6
Q ss_pred CCCeEEEECCcc--hHHHHHhc----CceEEEecCCCCCc--------EEEccCCCCCCCCCceeEEEEcccccCCCHHH
Q 027441 141 PSLVIADFGCGD--ARLAKSVK----NKVFSFDLVSNDPS--------VIACDMSNTPLNSSSVDVAVFCLSLMGINFPN 206 (223)
Q Consensus 141 ~~~~ILDiGcG~--G~~a~~la----~~v~gvDis~~~~~--------~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~ 206 (223)
++..||=.|++. |..+..++ .+|++++-++.... ....+... +.+..+|+|+.+.. ..
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~d~vl~~~g------~~ 203 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRELGAAEVVVGGSE--LSGAPVDLVVDSVG------GP 203 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecccc--ccCCCceEEEECCC------cH
Confidence 477888888743 33333333 46777765542211 11111111 22346899986644 23
Q ss_pred HHHHHHHccCCCCEEE
Q 027441 207 YLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 207 ~l~e~~rvLkpgG~lv 222 (223)
.+....+.|+++|.++
T Consensus 204 ~~~~~~~~l~~~G~~v 219 (305)
T cd08270 204 QLARALELLAPGGTVV 219 (305)
T ss_pred HHHHHHHHhcCCCEEE
Confidence 6788899999999886
No 450
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=24.53 E-value=2e+02 Score=26.09 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=43.8
Q ss_pred CeEEEECCcchH--HHHHhc---CceEEEecCCCCCcEEE--------ccC----------CCCCC--CCCceeEEEEcc
Q 027441 143 LVIADFGCGDAR--LAKSVK---NKVFSFDLVSNDPSVIA--------CDM----------SNTPL--NSSSVDVAVFCL 197 (223)
Q Consensus 143 ~~ILDiGcG~G~--~a~~la---~~v~gvDis~~~~~~~~--------~d~----------~~lp~--~~~sfD~Vi~~~ 197 (223)
.+|.=||.|.-. ++..|+ .+|+++|+++..+..+. .++ ..+.+ .....|+|+.+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 457778888643 444454 47999999873322110 000 00000 012467887655
Q ss_pred ccc-------CC-CHHHHHHHHHHccCCCCEEE
Q 027441 198 SLM-------GI-NFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 198 ~l~-------~~-d~~~~l~e~~rvLkpgG~lv 222 (223)
.-- .+ ....++..+.+.|++|-+++
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI 116 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVI 116 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEE
Confidence 431 11 23366788888898887765
No 451
>PRK06487 glycerate dehydrogenase; Provisional
Probab=24.35 E-value=88 Score=27.21 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=41.5
Q ss_pred CCCeEEEECCcc-hH-HHHHhc---CceEEEecCCCCCcEEEccCCCCCCCC--CceeEEEEcccccCCCHHHHHHHHHH
Q 027441 141 PSLVIADFGCGD-AR-LAKSVK---NKVFSFDLVSNDPSVIACDMSNTPLNS--SSVDVAVFCLSLMGINFPNYLQEAQR 213 (223)
Q Consensus 141 ~~~~ILDiGcG~-G~-~a~~la---~~v~gvDis~~~~~~~~~d~~~lp~~~--~sfD~Vi~~~~l~~~d~~~~l~e~~r 213 (223)
.+.+|.=||+|. |. ++..+. .+|+++|.......+ ....+.+ ...|+|+...-+.--....+=.+...
T Consensus 147 ~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~~~-----~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~ 221 (317)
T PRK06487 147 EGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPARP-----DRLPLDELLPQVDALTLHCPLTEHTRHLIGARELA 221 (317)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcccc-----cccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHh
Confidence 568899999987 44 344443 578888865321111 1111111 34588887666542111122234445
Q ss_pred ccCCCCEEE
Q 027441 214 VLKPRGEEQ 222 (223)
Q Consensus 214 vLkpgG~lv 222 (223)
.||||.+|+
T Consensus 222 ~mk~ga~lI 230 (317)
T PRK06487 222 LMKPGALLI 230 (317)
T ss_pred cCCCCeEEE
Confidence 678887775
No 452
>TIGR03334 IOR_beta indolepyruvate ferredoxin oxidoreductase, beta subunit. This model represents the beta subunit of indolepyruvate ferredoxin oxidoreductase, an alpha(2)/beta(2) tetramer, as found in Pyrococcus furiosus and Methanobacterium thermoautotrophicum. Cofactors for the tetramer include TPP, 4Fe4S, and 3Fe-4S. It shows considerable sequence similarity to subunits of several other ketoacid oxidoreductases.
Probab=24.09 E-value=2.4e+02 Score=22.29 Aligned_cols=31 Identities=16% Similarity=0.095 Sum_probs=21.7
Q ss_pred CCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 186 NSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 186 ~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
+.+..|++++... ..+. .....|+|||++++
T Consensus 61 ~~~~~Dilvald~------~~~~-~~~~~l~~~g~ii~ 91 (189)
T TIGR03334 61 PEGGADLLLAFEP------LEAL-RYLPYLSEGGEVIL 91 (189)
T ss_pred CCCCCCEEEEeCH------HHHH-HHHHhcCCCcEEEE
Confidence 3467899997765 4443 44567899999874
No 453
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=23.79 E-value=1.8e+02 Score=25.15 Aligned_cols=58 Identities=16% Similarity=0.074 Sum_probs=35.9
Q ss_pred CCeEEEECCcchHHHHHhc-------CceEEEecCC-------------------CCCcEEEccCCCCC-CC--CCceeE
Q 027441 142 SLVIADFGCGDARLAKSVK-------NKVFSFDLVS-------------------NDPSVIACDMSNTP-LN--SSSVDV 192 (223)
Q Consensus 142 ~~~ILDiGcG~G~~a~~la-------~~v~gvDis~-------------------~~~~~~~~d~~~lp-~~--~~sfD~ 192 (223)
..+||=.| |+|.++..|. .+|+++|... ..+.++.+|+.+.. +. -..+|+
T Consensus 15 ~~~vlVtG-atGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~d~ 93 (348)
T PRK15181 15 PKRWLITG-VAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNVDY 93 (348)
T ss_pred CCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCCCE
Confidence 46788888 5666555544 3688998643 13456788887632 10 124799
Q ss_pred EEEccccc
Q 027441 193 AVFCLSLM 200 (223)
Q Consensus 193 Vi~~~~l~ 200 (223)
|+-..+..
T Consensus 94 ViHlAa~~ 101 (348)
T PRK15181 94 VLHQAALG 101 (348)
T ss_pred EEECcccc
Confidence 88776654
No 454
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=23.60 E-value=1.5e+02 Score=26.46 Aligned_cols=37 Identities=24% Similarity=0.217 Sum_probs=24.7
Q ss_pred HHHHHHhccCCCCeEEEECCcchH----HHHHhc-----CceEEEecCC
Q 027441 131 IIVKWLKDHSPSLVIADFGCGDAR----LAKSVK-----NKVFSFDLVS 170 (223)
Q Consensus 131 ~i~~~l~~~~~~~~ILDiGcG~G~----~a~~la-----~~v~gvDis~ 170 (223)
.|...+. ....++-.|.|||. .++++. .+|+++|...
T Consensus 204 EI~~q~~---g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~ 249 (362)
T KOG1252|consen 204 EIWRQLD---GKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQE 249 (362)
T ss_pred HHHHHhc---CCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCc
Confidence 4444443 33557778888876 566776 4799999875
No 455
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=23.31 E-value=1e+02 Score=24.54 Aligned_cols=15 Identities=20% Similarity=0.160 Sum_probs=8.5
Q ss_pred EECCcchHHHHHhcC
Q 027441 147 DFGCGDARLAKSVKN 161 (223)
Q Consensus 147 DiGcG~G~~a~~la~ 161 (223)
=+-||||.-....+.
T Consensus 62 IliCGTGiG~siaAN 76 (171)
T TIGR01119 62 VCICGTGVGINNAVN 76 (171)
T ss_pred EEEcCCcHHHHHHHh
Confidence 345777765555553
No 456
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=23.30 E-value=1.9e+02 Score=26.62 Aligned_cols=83 Identities=22% Similarity=0.280 Sum_probs=52.8
Q ss_pred CCCeEEEECC-cch------HHHHHhc-----CceEEEecCC-------------CCCcEEEccCCCCCC----------
Q 027441 141 PSLVIADFGC-GDA------RLAKSVK-----NKVFSFDLVS-------------NDPSVIACDMSNTPL---------- 185 (223)
Q Consensus 141 ~~~~ILDiGc-G~G------~~a~~la-----~~v~gvDis~-------------~~~~~~~~d~~~lp~---------- 185 (223)
+...||=+|- |+| -++.+|. .-++++|+.. ..+.|+..+...-|.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 4567888872 444 3555555 1367888875 345555443333342
Q ss_pred CCCceeEEEEccccc-CCCHH--HHHHHHHHccCCCCEEEc
Q 027441 186 NSSSVDVAVFCLSLM-GINFP--NYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 186 ~~~sfD~Vi~~~~l~-~~d~~--~~l~e~~rvLkpgG~lvi 223 (223)
....||+||.-.+-- |+|-. .=+.++..+++|.=+|++
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llV 219 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLV 219 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEE
Confidence 256799999877665 55544 667888899999877764
No 457
>TIGR02175 PorC_KorC 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes the gamma subunit. In Pyrococcus furious, enzymes active on pyruvate and 2-ketoisovalerate share a common gamma subunit.
Probab=23.08 E-value=2.2e+02 Score=22.22 Aligned_cols=31 Identities=19% Similarity=0.091 Sum_probs=20.6
Q ss_pred CCCceeEEEEcccccCCCHHHHHHH--HHHccCCCCEEEc
Q 027441 186 NSSSVDVAVFCLSLMGINFPNYLQE--AQRVLKPRGEEQI 223 (223)
Q Consensus 186 ~~~sfD~Vi~~~~l~~~d~~~~l~e--~~rvLkpgG~lvi 223 (223)
+....|++++... .++.. ....|+|||++++
T Consensus 63 ~~~~~D~lva~~~-------~~~~~~~~~~~l~~gg~ii~ 95 (177)
T TIGR02175 63 QIYEPDYVVVLDP-------TLLKTVNVTAGLKEDGILIV 95 (177)
T ss_pred ccCCCCEEEEcCH-------HHhCccchhhCcCCCeEEEE
Confidence 3457899887664 22222 4567999999874
No 458
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.98 E-value=74 Score=28.77 Aligned_cols=69 Identities=17% Similarity=0.134 Sum_probs=43.8
Q ss_pred HHHhccCCCCeEEEECCcchHHHHHhc------CceEEEecCC---------------CCCcEEEccCCCCCCC--CCce
Q 027441 134 KWLKDHSPSLVIADFGCGDARLAKSVK------NKVFSFDLVS---------------NDPSVIACDMSNTPLN--SSSV 190 (223)
Q Consensus 134 ~~l~~~~~~~~ILDiGcG~G~~a~~la------~~v~gvDis~---------------~~~~~~~~d~~~lp~~--~~sf 190 (223)
.++....++..|+|..|.+|.-+..++ .+++|+|.++ ..++...+|+...+.+ -...
T Consensus 206 A~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~~~~v 285 (413)
T KOG2360|consen 206 AHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEKFRDV 285 (413)
T ss_pred hhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCcccccce
Confidence 344444577999999999998666655 5789999887 3344557777664322 2334
Q ss_pred eEEE----EcccccCC
Q 027441 191 DVAV----FCLSLMGI 202 (223)
Q Consensus 191 D~Vi----~~~~l~~~ 202 (223)
..|+ |+.+.+|.
T Consensus 286 ~~iL~DpscSgSgm~~ 301 (413)
T KOG2360|consen 286 TYILVDPSCSGSGMVS 301 (413)
T ss_pred eEEEeCCCCCCCcccc
Confidence 4555 44444554
No 459
>PLN02928 oxidoreductase family protein
Probab=22.85 E-value=87 Score=27.68 Aligned_cols=82 Identities=15% Similarity=0.054 Sum_probs=44.1
Q ss_pred CCCeEEEECCcc-hH-HHHHhc---CceEEEecCCCCCcEE------------E---ccCCCCCCCCCceeEEEEccccc
Q 027441 141 PSLVIADFGCGD-AR-LAKSVK---NKVFSFDLVSNDPSVI------------A---CDMSNTPLNSSSVDVAVFCLSLM 200 (223)
Q Consensus 141 ~~~~ILDiGcG~-G~-~a~~la---~~v~gvDis~~~~~~~------------~---~d~~~lp~~~~sfD~Vi~~~~l~ 200 (223)
.+.+|.=||.|. |. .+..+. .+|+++|.+....... . .....+.---...|+|++...+.
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt 237 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLT 237 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCC
Confidence 568999999986 54 344443 5899998763211000 0 01111110013469998877654
Q ss_pred CCCHHHHHHHHHHccCCCCEEE
Q 027441 201 GINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 201 ~~d~~~~l~e~~rvLkpgG~lv 222 (223)
--....+=.+....+|||.+|+
T Consensus 238 ~~T~~li~~~~l~~Mk~ga~lI 259 (347)
T PLN02928 238 KETAGIVNDEFLSSMKKGALLV 259 (347)
T ss_pred hHhhcccCHHHHhcCCCCeEEE
Confidence 2111122246667788888775
No 460
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=22.75 E-value=2.1e+02 Score=24.47 Aligned_cols=78 Identities=15% Similarity=0.168 Sum_probs=44.4
Q ss_pred CeEEEECCcc--hHHHHHhc-----CceEEEecCCCCCc----EEEccC--CCC-CCCCCceeEEEEcccccCCCHHHHH
Q 027441 143 LVIADFGCGD--ARLAKSVK-----NKVFSFDLVSNDPS----VIACDM--SNT-PLNSSSVDVAVFCLSLMGINFPNYL 208 (223)
Q Consensus 143 ~~ILDiGcG~--G~~a~~la-----~~v~gvDis~~~~~----~~~~d~--~~l-p~~~~sfD~Vi~~~~l~~~d~~~~l 208 (223)
.+|+=+|.|- |.++..+. ..+++.|.+..... +-..|- .+. -......|+|+.+--+. -...++
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~--~~~~~l 81 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE--ATEEVL 81 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH--HHHHHH
Confidence 4677788774 45666665 24677777752211 111111 111 11234579998765432 234788
Q ss_pred HHHHHccCCCCEEE
Q 027441 209 QEAQRVLKPRGEEQ 222 (223)
Q Consensus 209 ~e~~rvLkpgG~lv 222 (223)
.++...|+||.++.
T Consensus 82 ~~l~~~l~~g~iv~ 95 (279)
T COG0287 82 KELAPHLKKGAIVT 95 (279)
T ss_pred HHhcccCCCCCEEE
Confidence 88888888887763
No 461
>PRK08265 short chain dehydrogenase; Provisional
Probab=21.90 E-value=3.6e+02 Score=21.99 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=34.8
Q ss_pred CCCeEEEECCcchH---HHHHhc---CceEEEecCCC-----------CCcEEEccCCCCC-----CC-----CCceeEE
Q 027441 141 PSLVIADFGCGDAR---LAKSVK---NKVFSFDLVSN-----------DPSVIACDMSNTP-----LN-----SSSVDVA 193 (223)
Q Consensus 141 ~~~~ILDiGcG~G~---~a~~la---~~v~gvDis~~-----------~~~~~~~d~~~lp-----~~-----~~sfD~V 193 (223)
.+.++|=.|++.|. ++..|+ .+|+.+|.+.. .+.++.+|+.+.. +. .+..|++
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~l 84 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDIL 84 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 35678888876554 333333 46777776542 3556778886532 00 1457888
Q ss_pred EEcccc
Q 027441 194 VFCLSL 199 (223)
Q Consensus 194 i~~~~l 199 (223)
+.+...
T Consensus 85 v~~ag~ 90 (261)
T PRK08265 85 VNLACT 90 (261)
T ss_pred EECCCC
Confidence 876553
No 462
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=21.83 E-value=1e+02 Score=23.75 Aligned_cols=8 Identities=0% Similarity=-0.504 Sum_probs=3.2
Q ss_pred CcchHHHH
Q 027441 150 CGDARLAK 157 (223)
Q Consensus 150 cG~G~~a~ 157 (223)
||||.-..
T Consensus 63 CGTGiG~s 70 (142)
T PRK08621 63 DAYGAGSF 70 (142)
T ss_pred cCCChhhh
Confidence 44443333
No 463
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=21.79 E-value=3.7e+02 Score=22.31 Aligned_cols=29 Identities=17% Similarity=0.231 Sum_probs=20.7
Q ss_pred CceeEEEEcccccCCCHHHHHHHHHHccCCCCEEE
Q 027441 188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 188 ~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lv 222 (223)
..+|+|+.+.. ...+..+.+.|+++|.++
T Consensus 206 ~~~d~vl~~~g------~~~~~~~~~~l~~~g~~v 234 (323)
T cd05282 206 AGARLALDAVG------GESATRLARSLRPGGTLV 234 (323)
T ss_pred CCceEEEECCC------CHHHHHHHHhhCCCCEEE
Confidence 45899987655 223456778999999886
No 464
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=21.79 E-value=79 Score=25.16 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=16.0
Q ss_pred HHHHHHHHHHccCCCCEEEc
Q 027441 204 FPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 204 ~~~~l~e~~rvLkpgG~lvi 223 (223)
...++..+.++|++|-++++
T Consensus 99 v~~a~~~i~~~l~~~~lvV~ 118 (185)
T PF03721_consen 99 VESAIESIAPVLRPGDLVVI 118 (185)
T ss_dssp HHHHHHHHHHHHCSCEEEEE
T ss_pred HHHHHHHHHHHHhhcceEEE
Confidence 35889999999999777664
No 465
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=21.71 E-value=46 Score=26.12 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=40.9
Q ss_pred CCCeEEEECCcc-hH-HHHHhc---CceEEEecCCCCCc------EEEccCCCCCCCCCceeEEEEcccccCCCHHHHHH
Q 027441 141 PSLVIADFGCGD-AR-LAKSVK---NKVFSFDLVSNDPS------VIACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQ 209 (223)
Q Consensus 141 ~~~~ILDiGcG~-G~-~a~~la---~~v~gvDis~~~~~------~~~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~l~ 209 (223)
.+.+|.=||+|. |. ++..+. .+|+++|.+..... +...++..+ -...|+|+....+.--....+=.
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~el---l~~aDiv~~~~plt~~T~~li~~ 111 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDEL---LAQADIVSLHLPLTPETRGLINA 111 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHH---HHH-SEEEE-SSSSTTTTTSBSH
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhh---cchhhhhhhhhccccccceeeee
Confidence 578999999986 33 233332 68999999874221 111222111 13468888776653211111222
Q ss_pred HHHHccCCCCEEE
Q 027441 210 EAQRVLKPRGEEQ 222 (223)
Q Consensus 210 e~~rvLkpgG~lv 222 (223)
+....+++|.+|+
T Consensus 112 ~~l~~mk~ga~lv 124 (178)
T PF02826_consen 112 EFLAKMKPGAVLV 124 (178)
T ss_dssp HHHHTSTTTEEEE
T ss_pred eeeeccccceEEE
Confidence 3445677777665
No 466
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=21.63 E-value=1.1e+02 Score=26.66 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=27.9
Q ss_pred ceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 189 SVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 189 sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
.||+|+..+-=+-...+-.|.++.+.|.|||.+++
T Consensus 37 ~~d~~l~~~pK~~~e~e~qLa~ll~~~~~g~~i~v 71 (300)
T COG2813 37 DFDAVLLYWPKHKAEAEFQLAQLLARLPPGGEIVV 71 (300)
T ss_pred CCCEEEEEccCchHHHHHHHHHHHhhCCCCCeEEE
Confidence 68999876655444566888999999999999985
No 467
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=21.58 E-value=37 Score=18.85 Aligned_cols=21 Identities=19% Similarity=0.526 Sum_probs=9.7
Q ss_pred HchhcccccccccccccccCc
Q 027441 76 RARLSGGHFRMLNEKLYTCTG 96 (223)
Q Consensus 76 ~~~~~~~~fr~~~e~~~~~~~ 96 (223)
.|++|++.+.+.+..++.|+.
T Consensus 4 ~Cp~C~se~~y~D~~~~vCp~ 24 (30)
T PF08274_consen 4 KCPLCGSEYTYEDGELLVCPE 24 (30)
T ss_dssp --TTT-----EE-SSSEEETT
T ss_pred CCCCCCCcceeccCCEEeCCc
Confidence 589999998887777776654
No 468
>PRK06436 glycerate dehydrogenase; Provisional
Probab=21.54 E-value=1.3e+02 Score=25.99 Aligned_cols=79 Identities=10% Similarity=0.090 Sum_probs=43.7
Q ss_pred CCCeEEEECCcc-hH-HHHHhc---CceEEEecCCCCCcEE--EccCCCCCCCCCceeEEEEcccccCCCHHHHHHHHHH
Q 027441 141 PSLVIADFGCGD-AR-LAKSVK---NKVFSFDLVSNDPSVI--ACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQEAQR 213 (223)
Q Consensus 141 ~~~~ILDiGcG~-G~-~a~~la---~~v~gvDis~~~~~~~--~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~l~e~~r 213 (223)
.+.+|.=||+|. |. .+..+. .+|+++|.+.....+. ..++..+ -...|+|++...+..-....+-.+...
T Consensus 121 ~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~l~el---l~~aDiv~~~lp~t~~T~~li~~~~l~ 197 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDI---MKKSDFVLISLPLTDETRGMINSKMLS 197 (303)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcccCcccccCCHHHH---HhhCCEEEECCCCCchhhcCcCHHHHh
Confidence 578899999996 54 444443 4799999764221111 0111111 134688887766542211122245566
Q ss_pred ccCCCCEEE
Q 027441 214 VLKPRGEEQ 222 (223)
Q Consensus 214 vLkpgG~lv 222 (223)
.++||.+|+
T Consensus 198 ~mk~ga~lI 206 (303)
T PRK06436 198 LFRKGLAII 206 (303)
T ss_pred cCCCCeEEE
Confidence 688887765
No 469
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=21.50 E-value=4.9e+02 Score=23.08 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=44.1
Q ss_pred CCCCeEEEEC-Cc-chHHHHHhc-------CceEEEecCCCCC----------------cEEEccCCC-CC-------C-
Q 027441 140 SPSLVIADFG-CG-DARLAKSVK-------NKVFSFDLVSNDP----------------SVIACDMSN-TP-------L- 185 (223)
Q Consensus 140 ~~~~~ILDiG-cG-~G~~a~~la-------~~v~gvDis~~~~----------------~~~~~d~~~-lp-------~- 185 (223)
.++.+||=+| +| .|.++..++ .+|+++|.++.+. .....+... .. +
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t 253 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELT 253 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHh
Confidence 3567888887 45 355554443 1688998876221 111122111 00 1
Q ss_pred CCCceeEEEEcccccCCCHHHHHHHHHHccCCCCEEE
Q 027441 186 NSSSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 186 ~~~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lv 222 (223)
....||+|+.+.. -...+....++|+++|.++
T Consensus 254 ~g~g~D~vid~~g-----~~~~~~~a~~~l~~~G~~v 285 (410)
T cd08238 254 GGQGFDDVFVFVP-----VPELVEEADTLLAPDGCLN 285 (410)
T ss_pred CCCCCCEEEEcCC-----CHHHHHHHHHHhccCCeEE
Confidence 1235888876432 1567888899999888654
No 470
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=21.37 E-value=65 Score=28.30 Aligned_cols=82 Identities=17% Similarity=0.140 Sum_probs=42.4
Q ss_pred CCCeEEEECCcc-hH-HHHHhc---CceEEEecCCCCCcEEEccCCCCCCC--CCceeEEEEcccccCCCHHHHHHHHHH
Q 027441 141 PSLVIADFGCGD-AR-LAKSVK---NKVFSFDLVSNDPSVIACDMSNTPLN--SSSVDVAVFCLSLMGINFPNYLQEAQR 213 (223)
Q Consensus 141 ~~~~ILDiGcG~-G~-~a~~la---~~v~gvDis~~~~~~~~~d~~~lp~~--~~sfD~Vi~~~~l~~~d~~~~l~e~~r 213 (223)
.+.++-=||-|. |. .+..+. .+|...|.++..-.-...+..-.++. -...|+|+...-+..-....+=.+...
T Consensus 145 ~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~ 224 (324)
T COG1052 145 RGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELA 224 (324)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHH
Confidence 467888887765 22 222222 47777887752000011112112211 145688876666553333334445666
Q ss_pred ccCCCCEEE
Q 027441 214 VLKPRGEEQ 222 (223)
Q Consensus 214 vLkpgG~lv 222 (223)
.+|||++|+
T Consensus 225 ~mk~ga~lV 233 (324)
T COG1052 225 KMKPGAILV 233 (324)
T ss_pred hCCCCeEEE
Confidence 788888876
No 471
>PRK08312 putative indolepyruvate oxidoreductase subunit B; Reviewed
Probab=21.32 E-value=2.4e+02 Score=26.60 Aligned_cols=33 Identities=15% Similarity=0.079 Sum_probs=21.2
Q ss_pred CCCCceeEEEEcccccCCCHHHHHHHHH-HccCCC-CEEEc
Q 027441 185 LNSSSVDVAVFCLSLMGINFPNYLQEAQ-RVLKPR-GEEQI 223 (223)
Q Consensus 185 ~~~~sfD~Vi~~~~l~~~d~~~~l~e~~-rvLkpg-G~lvi 223 (223)
.+.+..|++|.+..++ ...... ..|+|| |.+++
T Consensus 81 i~~G~aDllIa~dlle------A~~~~~~~~l~~grt~~Iv 115 (510)
T PRK08312 81 PTPGDVDVVIAAELME------AGRAVQRGFVTPDRTTLIA 115 (510)
T ss_pred CCCCCCCEEEechhHH------hhhHhhhccCCCCCeEEEE
Confidence 3568899999866542 222233 358999 88774
No 472
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=21.12 E-value=44 Score=24.45 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=22.1
Q ss_pred HHHHHHchhcccccccccccccccCchHH
Q 027441 71 FLDKMRARLSGGHFRMLNEKLYTCTGKEA 99 (223)
Q Consensus 71 ~~~~~~~~~~~~~fr~~~e~~~~~~~~~~ 99 (223)
|=.+..|+.||.+|--+|.....|+....
T Consensus 6 lGtKR~Cp~CG~kFYDLnk~PivCP~CG~ 34 (108)
T PF09538_consen 6 LGTKRTCPSCGAKFYDLNKDPIVCPKCGT 34 (108)
T ss_pred cCCcccCCCCcchhccCCCCCccCCCCCC
Confidence 34466799999999999988777765543
No 473
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=21.02 E-value=2.4e+02 Score=24.03 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=21.4
Q ss_pred CceeEEEEcccccCCCHHHHHHHHHHccCCCCEEE
Q 027441 188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 188 ~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lv 222 (223)
..+|+|+.+... ...+..+.++|+++|.++
T Consensus 231 ~~~d~v~~~~g~-----~~~~~~~~~~l~~~G~~v 260 (337)
T cd05283 231 GSLDLIIDTVSA-----SHDLDPYLSLLKPGGTLV 260 (337)
T ss_pred CCceEEEECCCC-----cchHHHHHHHhcCCCEEE
Confidence 558888865442 234677889999999886
No 474
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=20.90 E-value=1.9e+02 Score=24.21 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=23.1
Q ss_pred CceeEEEEcccccCCCHHHHHHHHHHccCCCCEEE
Q 027441 188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 188 ~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lv 222 (223)
..+|+|+.+.--. +...++..+...+.++..++
T Consensus 65 ~~~d~vila~k~~--~~~~~~~~l~~~l~~~~~iv 97 (304)
T PRK06522 65 GPQDLVILAVKAY--QLPAALPSLAPLLGPDTPVL 97 (304)
T ss_pred CCCCEEEEecccc--cHHHHHHHHhhhcCCCCEEE
Confidence 5689888765532 45677888888887776654
No 475
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=20.81 E-value=4.7e+02 Score=22.01 Aligned_cols=30 Identities=0% Similarity=-0.123 Sum_probs=20.2
Q ss_pred CceeEEEEcccccCCCHHHHHHHHHHccCCCCEEEc
Q 027441 188 SSVDVAVFCLSLMGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 188 ~sfD~Vi~~~~l~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
..+|+|+.+.. ...+....+.|+++|.+++
T Consensus 211 ~~~d~vid~~g------~~~~~~~~~~l~~~G~~v~ 240 (324)
T cd08291 211 LNATIFFDAVG------GGLTGQILLAMPYGSTLYV 240 (324)
T ss_pred CCCcEEEECCC------cHHHHHHHHhhCCCCEEEE
Confidence 35898886544 2234556788899998863
No 476
>PRK07806 short chain dehydrogenase; Provisional
Probab=20.53 E-value=4.5e+02 Score=20.97 Aligned_cols=82 Identities=16% Similarity=0.093 Sum_probs=44.0
Q ss_pred CCCeEEEECCcchH---HHHHhc---CceEEEecCC---------------CCCcEEEccCCCCC-----CC-----CCc
Q 027441 141 PSLVIADFGCGDAR---LAKSVK---NKVFSFDLVS---------------NDPSVIACDMSNTP-----LN-----SSS 189 (223)
Q Consensus 141 ~~~~ILDiGcG~G~---~a~~la---~~v~gvDis~---------------~~~~~~~~d~~~lp-----~~-----~~s 189 (223)
.+.+||-.|+..|. ++..|. .+|++++-+. .++.++.+|+.+.. +. -+.
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGG 84 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 35678888875443 222333 3576665432 12355677876532 00 135
Q ss_pred eeEEEEcccccCC-----------C---HHHHHHHHHHccCCCCEEE
Q 027441 190 VDVAVFCLSLMGI-----------N---FPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 190 fD~Vi~~~~l~~~-----------d---~~~~l~e~~rvLkpgG~lv 222 (223)
+|+|+.+...... + ...+++.+.+.++.+|.++
T Consensus 85 ~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv 131 (248)
T PRK07806 85 LDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVV 131 (248)
T ss_pred CcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEE
Confidence 7887765533210 1 2266677777766667665
No 477
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.32 E-value=1.9e+02 Score=23.23 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=26.5
Q ss_pred CCCCceeEEEEcccccCC-------------CHHHHHHHHHHccCCCCEEE
Q 027441 185 LNSSSVDVAVFCLSLMGI-------------NFPNYLQEAQRVLKPRGEEQ 222 (223)
Q Consensus 185 ~~~~sfD~Vi~~~~l~~~-------------d~~~~l~e~~rvLkpgG~lv 222 (223)
+..+..|+|+++..|+-+ +.+.++..+..+|.|+..|+
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allI 96 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIV 96 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEE
Confidence 456677999999888744 23366667777777776665
No 478
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=20.28 E-value=1.2e+02 Score=25.64 Aligned_cols=76 Identities=16% Similarity=0.148 Sum_probs=41.0
Q ss_pred eEEEECCcc--hHHHHHhc---CceEEEecCCCCCcEE----EccCCCCCC-CCCceeEEEEcccccCCCHHHHHHHHHH
Q 027441 144 VIADFGCGD--ARLAKSVK---NKVFSFDLVSNDPSVI----ACDMSNTPL-NSSSVDVAVFCLSLMGINFPNYLQEAQR 213 (223)
Q Consensus 144 ~ILDiGcG~--G~~a~~la---~~v~gvDis~~~~~~~----~~d~~~lp~-~~~sfD~Vi~~~~l~~~d~~~~l~e~~r 213 (223)
+|.=||+|. |.++..|. .+|+++|.++...... ..+....+. .-...|+|+.+..... ...++.++..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~--~~~~~~~l~~ 79 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL--LLPPSEQLIP 79 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH--HHHHHHHHHH
Confidence 466678885 44666654 3689999876322110 000000000 1235688887765322 2356777777
Q ss_pred ccCCCCEE
Q 027441 214 VLKPRGEE 221 (223)
Q Consensus 214 vLkpgG~l 221 (223)
.++|+.++
T Consensus 80 ~l~~~~ii 87 (279)
T PRK07417 80 ALPPEAIV 87 (279)
T ss_pred hCCCCcEE
Confidence 77777554
No 479
>PLN02256 arogenate dehydrogenase
Probab=20.24 E-value=2.6e+02 Score=24.12 Aligned_cols=77 Identities=22% Similarity=0.215 Sum_probs=41.4
Q ss_pred CCCeEEEECCcc--hHHHHHhc---CceEEEecCCCCC-----cEE-EccCCCCCCCCCceeEEEEcccccCCCHHHHHH
Q 027441 141 PSLVIADFGCGD--ARLAKSVK---NKVFSFDLVSNDP-----SVI-ACDMSNTPLNSSSVDVAVFCLSLMGINFPNYLQ 209 (223)
Q Consensus 141 ~~~~ILDiGcG~--G~~a~~la---~~v~gvDis~~~~-----~~~-~~d~~~lp~~~~sfD~Vi~~~~l~~~d~~~~l~ 209 (223)
...+|.=||+|. |.++..+. ..|+++|.+.... .+. ..+...+ .....|+|+.+.-.. ....++.
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~--~~~~aDvVilavp~~--~~~~vl~ 110 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDF--CEEHPDVVLLCTSIL--STEAVLR 110 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHH--hhCCCCEEEEecCHH--HHHHHHH
Confidence 456888999885 33555554 3688898775210 000 0111111 112468888765432 2345666
Q ss_pred HH-HHccCCCCEE
Q 027441 210 EA-QRVLKPRGEE 221 (223)
Q Consensus 210 e~-~rvLkpgG~l 221 (223)
++ ...++||.++
T Consensus 111 ~l~~~~l~~~~iv 123 (304)
T PLN02256 111 SLPLQRLKRSTLF 123 (304)
T ss_pred hhhhhccCCCCEE
Confidence 66 4557777655
No 480
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=20.12 E-value=69 Score=24.92 Aligned_cols=88 Identities=13% Similarity=0.053 Sum_probs=39.0
Q ss_pred HHHHHhccCCCCeEEEECCcchHHHHHhcCceEEEecCC------------CCCcEEEccCCCCCCCCCceeEEEEcccc
Q 027441 132 IVKWLKDHSPSLVIADFGCGDARLAKSVKNKVFSFDLVS------------NDPSVIACDMSNTPLNSSSVDVAVFCLSL 199 (223)
Q Consensus 132 i~~~l~~~~~~~~ILDiGcG~G~~a~~la~~v~gvDis~------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l 199 (223)
++++.... .+.+||=+|.=.-.+...|......+.+.. .++.+. =....|. ...||.||..+.=
T Consensus 4 llR~~~~f-~~k~vL~~g~~~D~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--f~~~~~~-~~~~D~vvly~PK 79 (155)
T PF08468_consen 4 LLRNSDLF-EGKSVLFAGDPQDDLPAQLPAIAVSVHVFSYHHWYALQKQAQSNVQFH--FGAELPA-DQDFDTVVLYWPK 79 (155)
T ss_dssp HHTTHHHH-TT-EEEEEE---SSHHHHS--SEEEEEESBHHHHHHHHHHHGGGEEE---SS--HHH-HTT-SEEEEE--S
T ss_pred hhhhHHHH-CCCeEEEEcCCchhhHHHhhhcCCEEEEEEchHHHHHhHhcccCceEe--eeccCCc-ccCCCEEEEEccC
Confidence 34444444 566788887655555555553222222221 111111 0011221 3468999865542
Q ss_pred cCCCHHHHHHHHHHccCCCCEEEc
Q 027441 200 MGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 200 ~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
.--...-.|..+...|++||.|+|
T Consensus 80 aK~e~~~lL~~l~~~L~~g~~i~v 103 (155)
T PF08468_consen 80 AKAEAQYLLANLLSHLPPGTEIFV 103 (155)
T ss_dssp SHHHHHHHHHHHHTTS-TT-EEEE
T ss_pred cHHHHHHHHHHHHHhCCCCCEEEE
Confidence 221334678888899999999886
No 481
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=20.07 E-value=3.2e+02 Score=24.49 Aligned_cols=78 Identities=19% Similarity=0.271 Sum_probs=43.3
Q ss_pred CCCeEEEECCcchHHHHHhc------CceEEEecCCCCC---------cEEEc----cCCC--CCCCCCceeEEEEcccc
Q 027441 141 PSLVIADFGCGDARLAKSVK------NKVFSFDLVSNDP---------SVIAC----DMSN--TPLNSSSVDVAVFCLSL 199 (223)
Q Consensus 141 ~~~~ILDiGcG~G~~a~~la------~~v~gvDis~~~~---------~~~~~----d~~~--lp~~~~sfD~Vi~~~~l 199 (223)
++.+|.=+|||.=.++.... .+++++|+++... +++.. |+.. ..+.+.-.|+++-
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e---- 260 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFE---- 260 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEE----
Confidence 67888888888644443332 5899999998321 12111 1100 0122334555532
Q ss_pred cCCCHHHHHHHHHHccCCCCEEEc
Q 027441 200 MGINFPNYLQEAQRVLKPRGEEQI 223 (223)
Q Consensus 200 ~~~d~~~~l~e~~rvLkpgG~lvi 223 (223)
.+.-...++.....+.++|..+|
T Consensus 261 -~~G~~~~~~~al~~~~~~G~~v~ 283 (366)
T COG1062 261 -CVGNVEVMRQALEATHRGGTSVI 283 (366)
T ss_pred -ccCCHHHHHHHHHHHhcCCeEEE
Confidence 22224577777778888888764
Done!