BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027442
MEALRKVALAYYNSGTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHDENMRTRD
FFDKLNINRSGGLDSMEVLTLYYILKSGRPICGQCKTFVTNEYFTCMKCFERQTAAYSIC
LKCFRDKGGLDHNHARSYFVDNFSLLESLRKKPLPNHQVSSRITPSQRTDTSRPDHSGSP
SNLAIVPYNPNIPGERRNPWQVYFRLLEAGLHLASIVAGCSVM

High Scoring Gene Products

Symbol, full name Information P value
AT4G13440 protein from Arabidopsis thaliana 9.0e-22

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027442
        (223 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2142125 - symbol:AT4G13440 species:3702 "Arabi...   254  9.0e-22   1


>TAIR|locus:2142125 [details] [associations]
            symbol:AT4G13440 species:3702 "Arabidopsis thaliana"
            [GO:0005509 "calcium ion binding" evidence=IEA;ISS] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR002048 InterPro:IPR011992 Pfam:PF13202
            PROSITE:PS50222 SMART:SM00054 Prosite:PS00018 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0005509 Gene3D:1.10.238.10
            InterPro:IPR018247 EMBL:AL161536 EMBL:AL049608 HSSP:O82040
            IPI:IPI00523583 PIR:T06301 RefSeq:NP_193080.1 UniGene:At.54305
            ProteinModelPortal:Q9T0L5 SMR:Q9T0L5 EnsemblPlants:AT4G13440.1
            GeneID:826976 KEGG:ath:AT4G13440 TAIR:At4g13440 eggNOG:NOG240034
            HOGENOM:HOG000029195 InParanoid:Q9T0L5 OMA:HEAAIAY PhylomeDB:Q9T0L5
            ProtClustDB:CLSN2916051 ArrayExpress:Q9T0L5 Genevestigator:Q9T0L5
            Uniprot:Q9T0L5
        Length = 154

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 55/151 (36%), Positives = 87/151 (57%)

Query:     1 MEALRKVALAYYNSGTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHDENMRTRD 60
             M+ L + A+AYYN+G+ E++ L  QFF++MD +G+ RVS +E+ DF+   A    +   +
Sbjct:     1 MDELHEAAIAYYNNGSMEQQNLSWQFFRAMDVNGDGRVSLQEYTDFLRQTAGLAWIHP-E 59

Query:    61 FFDKLNINRSGGLDSMEVLTLYYILKSGRPICGQCKTFVTNEYFTCMKCFERQTA-AYSI 119
              F +L+ N  G LD  EVLTLYY+ ++    C  C   +   YFTC+ CFE      + +
Sbjct:    60 MFRELDRNGDGQLDFWEVLTLYYVARTRTINCRTCLRILNGLYFTCVTCFESSCGNTFDL 119

Query:   120 CLKCFRDKGGLDHNHARSYFVDNFSLLESLR 150
             C+KC+  +    + H    F+D++ LL S R
Sbjct:   120 CVKCYMRR---TYCHPHRLFLDSYVLLRSRR 147


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.136   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      223       223   0.00098  112 3  11 22  0.49    32
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  186 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.62u 0.15s 22.77t   Elapsed:  00:00:01
  Total cpu time:  22.62u 0.15s 22.77t   Elapsed:  00:00:01
  Start:  Fri May 10 16:08:04 2013   End:  Fri May 10 16:08:05 2013

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