Query 027442
Match_columns 223
No_of_seqs 306 out of 1547
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 10:00:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00027 EH Eps15 homology d 99.2 1.3E-10 2.7E-15 87.9 10.2 79 14-93 3-84 (96)
2 PF13499 EF-hand_7: EF-hand do 99.2 9.1E-11 2E-15 81.9 7.4 61 22-82 1-66 (66)
3 cd00052 EH Eps15 homology doma 99.1 6.8E-10 1.5E-14 76.9 7.3 61 24-85 2-62 (67)
4 cd05022 S-100A13 S-100A13: S-1 99.1 9.6E-10 2.1E-14 83.1 8.5 68 17-84 4-75 (89)
5 cd05026 S-100Z S-100Z: S-100Z 99.0 2.6E-09 5.7E-14 80.8 9.2 67 18-84 7-81 (93)
6 cd05027 S-100B S-100B: S-100B 99.0 3.9E-09 8.5E-14 79.4 9.2 66 18-83 5-78 (88)
7 KOG0027 Calmodulin and related 98.9 4E-09 8.7E-14 85.6 8.5 64 19-82 83-147 (151)
8 KOG0027 Calmodulin and related 98.9 5.7E-09 1.2E-13 84.7 8.8 71 15-85 2-73 (151)
9 COG5126 FRQ1 Ca2+-binding prot 98.9 4.7E-09 1E-13 87.4 7.8 65 18-82 89-154 (160)
10 cd05025 S-100A1 S-100A1: S-100 98.9 8.7E-09 1.9E-13 77.2 8.1 68 18-85 6-81 (92)
11 COG5126 FRQ1 Ca2+-binding prot 98.9 2.4E-08 5.2E-13 83.2 10.6 77 9-86 8-85 (160)
12 cd05031 S-100A10_like S-100A10 98.9 1.8E-08 4E-13 75.8 8.9 65 19-83 6-78 (94)
13 cd00213 S-100 S-100: S-100 dom 98.9 1.5E-08 3.3E-13 74.9 8.2 67 17-83 4-78 (88)
14 PTZ00183 centrin; Provisional 98.8 4.1E-08 8.9E-13 78.2 10.8 73 13-85 9-82 (158)
15 cd05029 S-100A6 S-100A6: S-100 98.8 4.8E-08 1E-12 73.4 9.1 68 18-85 7-80 (88)
16 cd05023 S-100A11 S-100A11: S-1 98.8 5.6E-08 1.2E-12 73.3 8.8 66 18-83 6-79 (89)
17 cd00252 SPARC_EC SPARC_EC; ext 98.7 4.6E-08 9.9E-13 77.4 8.1 64 16-82 43-106 (116)
18 PTZ00184 calmodulin; Provision 98.7 6.8E-08 1.5E-12 75.7 8.6 71 14-84 4-75 (149)
19 cd00051 EFh EF-hand, calcium b 98.7 9.5E-08 2.1E-12 62.9 7.4 60 23-82 2-62 (63)
20 KOG0041 Predicted Ca2+-binding 98.6 1.2E-07 2.6E-12 81.6 8.1 78 16-93 94-172 (244)
21 KOG0044 Ca2+ sensor (EF-Hand s 98.6 2E-07 4.4E-12 79.8 9.4 66 18-84 61-128 (193)
22 PTZ00183 centrin; Provisional 98.6 3.7E-07 8E-12 72.6 9.9 63 21-83 53-117 (158)
23 PTZ00184 calmodulin; Provision 98.6 4.2E-07 9.2E-12 71.1 9.8 61 22-82 48-110 (149)
24 PLN02964 phosphatidylserine de 98.5 5.7E-07 1.2E-11 89.0 10.5 72 14-85 172-244 (644)
25 KOG0028 Ca2+-binding protein ( 98.5 9.2E-07 2E-11 73.7 9.9 71 14-84 26-97 (172)
26 PF13833 EF-hand_8: EF-hand do 98.5 5.2E-07 1.1E-11 60.7 7.0 50 34-83 1-52 (54)
27 KOG0028 Ca2+-binding protein ( 98.4 1.8E-06 3.8E-11 72.0 9.1 64 19-82 104-168 (172)
28 PF12763 EF-hand_4: Cytoskelet 98.4 1.7E-06 3.7E-11 67.3 7.4 70 15-86 4-73 (104)
29 PF00036 EF-hand_1: EF hand; 98.3 9.2E-07 2E-11 53.5 4.0 27 23-49 2-28 (29)
30 cd05030 calgranulins Calgranul 98.3 3.6E-06 7.8E-11 63.0 7.7 66 18-83 5-78 (88)
31 KOG0031 Myosin regulatory ligh 98.3 5.2E-06 1.1E-10 68.9 9.0 94 7-112 18-112 (171)
32 KOG0034 Ca2+/calmodulin-depend 98.3 4.9E-06 1.1E-10 71.0 8.8 63 20-82 103-173 (187)
33 PF14658 EF-hand_9: EF-hand do 98.2 5.2E-06 1.1E-10 59.7 6.3 59 25-83 2-63 (66)
34 KOG0044 Ca2+ sensor (EF-Hand s 98.2 5.9E-06 1.3E-10 70.9 7.6 61 22-82 101-173 (193)
35 PF00036 EF-hand_1: EF hand; 98.2 2.7E-06 5.9E-11 51.4 3.8 27 57-83 1-27 (29)
36 KOG0037 Ca2+-binding protein, 98.1 1.4E-05 3.1E-10 69.4 8.9 65 21-85 124-189 (221)
37 PRK12309 transaldolase/EF-hand 98.1 1.4E-05 3E-10 75.2 9.0 56 17-84 330-385 (391)
38 cd05024 S-100A10 S-100A10: A s 98.0 6.6E-05 1.4E-09 57.2 8.9 65 20-85 7-77 (91)
39 PF13405 EF-hand_6: EF-hand do 98.0 1.3E-05 2.8E-10 48.6 4.1 30 22-51 1-31 (31)
40 PLN02964 phosphatidylserine de 98.0 4.2E-05 9E-10 76.0 9.9 68 14-85 136-208 (644)
41 KOG0030 Myosin essential light 97.9 3.8E-05 8.2E-10 62.9 7.1 73 15-87 5-80 (152)
42 KOG0377 Protein serine/threoni 97.9 3.8E-05 8.1E-10 73.0 7.6 70 19-88 545-619 (631)
43 KOG0037 Ca2+-binding protein, 97.9 9.8E-05 2.1E-09 64.3 9.3 68 20-87 56-125 (221)
44 PF13202 EF-hand_5: EF hand; P 97.8 2.7E-05 5.8E-10 45.5 3.5 23 24-46 2-24 (25)
45 KOG0034 Ca2+/calmodulin-depend 97.7 0.00043 9.2E-09 59.1 10.3 102 23-124 68-173 (187)
46 KOG0036 Predicted mitochondria 97.7 0.00017 3.7E-09 68.0 8.5 69 14-82 7-77 (463)
47 KOG0036 Predicted mitochondria 97.7 0.00011 2.3E-09 69.3 7.2 64 19-82 80-144 (463)
48 PF10591 SPARC_Ca_bdg: Secrete 97.6 5.4E-05 1.2E-09 59.5 3.1 63 17-80 50-112 (113)
49 KOG0046 Ca2+-binding actin-bun 97.6 0.00028 6.1E-09 68.2 8.2 75 12-87 10-88 (627)
50 PF14788 EF-hand_10: EF hand; 97.5 0.00035 7.6E-09 47.8 6.3 49 37-85 1-50 (51)
51 PF13202 EF-hand_5: EF hand; P 97.5 0.00011 2.4E-09 42.8 3.2 24 58-81 1-24 (25)
52 PF13499 EF-hand_7: EF-hand do 97.5 0.0003 6.6E-09 48.6 5.3 46 2-47 20-66 (66)
53 KOG4223 Reticulocalbin, calume 97.4 0.00028 6E-09 64.6 6.1 67 20-86 162-230 (325)
54 PF13833 EF-hand_8: EF-hand do 97.4 0.00036 7.8E-09 46.7 5.1 45 2-49 8-53 (54)
55 KOG0031 Myosin regulatory ligh 97.3 0.00077 1.7E-08 56.2 7.2 63 20-82 100-163 (171)
56 PF13405 EF-hand_6: EF-hand do 97.3 0.00036 7.8E-09 42.1 3.5 26 58-83 2-27 (31)
57 KOG4223 Reticulocalbin, calume 97.2 0.00093 2E-08 61.2 6.4 73 13-85 69-142 (325)
58 KOG0040 Ca2+-binding actin-bun 97.1 0.0012 2.7E-08 70.1 7.3 68 15-82 2247-2322(2399)
59 KOG4251 Calcium binding protei 96.8 0.00087 1.9E-08 59.9 3.0 63 18-80 98-164 (362)
60 smart00054 EFh EF-hand, calciu 96.8 0.0021 4.5E-08 35.5 3.3 26 23-48 2-27 (29)
61 cd05022 S-100A13 S-100A13: S-1 96.7 0.0041 8.9E-08 46.9 5.2 30 21-50 47-76 (89)
62 KOG0030 Myosin essential light 96.6 0.0069 1.5E-07 49.7 6.6 60 21-81 88-148 (152)
63 cd05029 S-100A6 S-100A6: S-100 96.6 0.0039 8.5E-08 46.7 4.6 49 2-50 32-80 (88)
64 KOG2643 Ca2+ binding protein, 96.4 0.0016 3.5E-08 61.9 1.9 57 30-87 208-264 (489)
65 KOG0038 Ca2+-binding kinase in 96.4 0.015 3.2E-07 48.4 7.4 59 24-82 111-175 (189)
66 cd05026 S-100Z S-100Z: S-100Z 96.3 0.0072 1.6E-07 45.5 4.8 32 19-50 51-82 (93)
67 KOG4065 Uncharacterized conser 96.2 0.02 4.2E-07 45.9 7.0 65 14-80 62-141 (144)
68 KOG0377 Protein serine/threoni 96.2 0.047 1E-06 52.5 10.7 69 19-87 462-578 (631)
69 KOG1955 Ral-GTPase effector RA 96.1 0.013 2.8E-07 56.9 6.4 74 13-87 223-296 (737)
70 smart00054 EFh EF-hand, calciu 96.1 0.0079 1.7E-07 33.0 3.1 26 58-83 2-27 (29)
71 cd05030 calgranulins Calgranul 95.5 0.036 7.7E-07 41.2 5.2 31 20-50 50-80 (88)
72 cd05023 S-100A11 S-100A11: S-1 95.4 0.025 5.3E-07 42.5 4.3 31 20-50 51-81 (89)
73 cd02249 ZZ Zinc finger, ZZ typ 95.3 0.0053 1.2E-07 40.6 0.4 41 91-137 2-42 (46)
74 cd05027 S-100B S-100B: S-100B 95.0 0.06 1.3E-06 40.3 5.3 31 20-50 50-80 (88)
75 cd05024 S-100A10 S-100A10: A s 95.0 0.042 9E-07 41.9 4.4 31 20-50 47-77 (91)
76 PF09279 EF-hand_like: Phospho 94.9 0.083 1.8E-06 38.4 5.7 60 22-82 1-67 (83)
77 cd00051 EFh EF-hand, calcium b 94.8 0.09 2E-06 33.7 5.2 29 19-47 34-62 (63)
78 KOG0038 Ca2+-binding kinase in 94.7 0.075 1.6E-06 44.3 5.6 64 25-88 75-140 (189)
79 KOG3555 Ca2+-binding proteogly 94.7 0.027 6E-07 52.4 3.2 67 13-82 242-308 (434)
80 cd05031 S-100A10_like S-100A10 94.5 0.077 1.7E-06 39.6 4.9 32 20-51 50-81 (94)
81 KOG1029 Endocytic adaptor prot 94.4 0.059 1.3E-06 54.8 5.1 70 15-85 189-258 (1118)
82 cd05025 S-100A1 S-100A1: S-100 94.1 0.073 1.6E-06 39.5 3.8 31 20-50 51-81 (92)
83 KOG2643 Ca2+ binding protein, 93.9 0.22 4.7E-06 47.8 7.4 76 18-94 354-466 (489)
84 cd00052 EH Eps15 homology doma 93.9 0.13 2.7E-06 34.9 4.5 30 20-49 32-61 (67)
85 cd00252 SPARC_EC SPARC_EC; ext 93.9 0.07 1.5E-06 42.2 3.6 29 20-48 79-107 (116)
86 cd02340 ZZ_NBR1_like Zinc fing 93.4 0.029 6.2E-07 36.8 0.5 32 91-127 2-33 (43)
87 cd00213 S-100 S-100: S-100 dom 93.3 0.16 3.5E-06 37.1 4.5 31 20-50 50-80 (88)
88 KOG2562 Protein phosphatase 2 93.2 0.15 3.3E-06 49.1 5.3 75 5-82 296-377 (493)
89 PF14788 EF-hand_10: EF hand; 92.9 0.2 4.4E-06 34.3 4.1 32 19-50 19-50 (51)
90 PF06361 RTBV_P12: Rice tungro 92.8 0.082 1.8E-06 40.0 2.3 27 173-199 73-99 (110)
91 cd02343 ZZ_EF Zinc finger, ZZ 92.3 0.054 1.2E-06 36.6 0.7 32 91-127 2-33 (48)
92 KOG0751 Mitochondrial aspartat 92.1 0.67 1.5E-05 45.4 8.0 55 28-83 81-135 (694)
93 KOG4578 Uncharacterized conser 92.0 0.15 3.2E-06 47.5 3.2 66 19-85 331-399 (421)
94 KOG0042 Glycerol-3-phosphate d 91.7 0.43 9.4E-06 47.3 6.3 75 15-89 587-662 (680)
95 KOG4666 Predicted phosphate ac 91.5 1.1 2.5E-05 41.7 8.5 62 21-82 259-322 (412)
96 smart00027 EH Eps15 homology d 91.1 0.32 7E-06 36.3 3.8 30 21-50 44-73 (96)
97 PF12763 EF-hand_4: Cytoskelet 91.0 0.66 1.4E-05 35.9 5.6 38 8-48 31-70 (104)
98 KOG4666 Predicted phosphate ac 90.8 0.28 6.2E-06 45.6 3.9 65 17-82 292-357 (412)
99 PF00569 ZZ: Zinc finger, ZZ t 89.4 0.033 7.1E-07 36.9 -2.5 36 90-130 5-41 (46)
100 KOG4236 Serine/threonine prote 89.1 0.59 1.3E-05 46.5 4.8 36 90-125 157-192 (888)
101 KOG0998 Synaptic vesicle prote 89.0 0.21 4.5E-06 51.6 1.7 72 15-87 277-348 (847)
102 KOG2562 Protein phosphatase 2 88.7 1.8 3.9E-05 41.9 7.6 59 25-85 282-344 (493)
103 cd02335 ZZ_ADA2 Zinc finger, Z 88.5 0.23 4.9E-06 33.3 1.1 42 91-137 2-45 (49)
104 KOG0169 Phosphoinositide-speci 88.5 1.3 2.9E-05 45.0 6.9 125 17-151 132-276 (746)
105 cd02341 ZZ_ZZZ3 Zinc finger, Z 87.6 0.2 4.3E-06 33.7 0.4 42 91-137 2-44 (48)
106 smart00291 ZnF_ZZ Zinc-binding 87.3 0.18 3.9E-06 32.9 0.1 36 90-130 5-40 (44)
107 cd02339 ZZ_Mind_bomb Zinc fing 87.3 0.25 5.4E-06 32.8 0.7 32 91-127 2-34 (45)
108 PF14658 EF-hand_9: EF-hand do 86.8 1.1 2.4E-05 32.2 3.9 30 20-49 34-64 (66)
109 cd02338 ZZ_PCMF_like Zinc fing 86.7 0.25 5.4E-06 33.2 0.5 32 91-127 2-34 (49)
110 cd02334 ZZ_dystrophin Zinc fin 86.6 0.27 5.8E-06 33.2 0.6 41 91-136 2-44 (49)
111 KOG4236 Serine/threonine prote 86.0 0.37 8E-06 47.9 1.4 33 90-122 279-311 (888)
112 KOG2243 Ca2+ release channel ( 85.8 1.3 2.7E-05 48.3 5.1 58 25-82 4061-4118(5019)
113 KOG4251 Calcium binding protei 85.3 2.3 5E-05 38.4 5.9 63 19-81 279-342 (362)
114 cd02337 ZZ_CBP Zinc finger, ZZ 85.0 0.36 7.9E-06 31.3 0.6 36 91-135 2-37 (41)
115 KOG4582 Uncharacterized conser 84.7 0.37 8.1E-06 43.5 0.7 43 90-141 153-196 (278)
116 PF05042 Caleosin: Caleosin re 84.3 4.2 9.1E-05 34.6 6.8 27 57-83 97-123 (174)
117 cd02345 ZZ_dah Zinc finger, ZZ 83.3 0.37 8.1E-06 32.3 0.1 32 91-127 2-34 (49)
118 KOG1029 Endocytic adaptor prot 82.0 5.5 0.00012 41.2 7.6 72 14-87 9-80 (1118)
119 KOG3866 DNA-binding protein of 81.7 1.7 3.8E-05 40.4 3.7 58 25-82 248-322 (442)
120 KOG0041 Predicted Ca2+-binding 80.6 3.3 7.1E-05 36.4 4.9 29 57-85 100-128 (244)
121 KOG0457 Histone acetyltransfer 79.7 0.97 2.1E-05 43.2 1.5 50 88-142 13-65 (438)
122 PF05042 Caleosin: Caleosin re 77.9 10 0.00022 32.3 6.9 62 20-82 95-164 (174)
123 KOG0035 Ca2+-binding actin-bun 77.8 6.5 0.00014 41.0 6.8 70 13-82 739-814 (890)
124 PF10591 SPARC_Ca_bdg: Secrete 77.5 2.7 5.9E-05 32.8 3.2 25 21-45 88-112 (113)
125 PF05517 p25-alpha: p25-alpha 77.1 18 0.00038 29.7 8.1 63 24-86 2-71 (154)
126 KOG0751 Mitochondrial aspartat 77.0 27 0.00059 34.6 10.4 105 18-130 30-140 (694)
127 KOG1707 Predicted Ras related/ 74.9 3.2 6.9E-05 41.4 3.6 70 14-85 308-378 (625)
128 cd02344 ZZ_HERC2 Zinc finger, 74.6 1.1 2.3E-05 29.9 0.2 38 91-136 2-40 (45)
129 KOG0040 Ca2+-binding actin-bun 73.8 8 0.00017 42.8 6.3 58 20-78 2295-2355(2399)
130 KOG1707 Predicted Ras related/ 73.6 13 0.00027 37.3 7.3 31 15-45 189-219 (625)
131 PF10173 Mit_KHE1: Mitochondri 73.3 3.2 6.9E-05 35.4 2.8 37 180-217 148-186 (187)
132 KOG4347 GTPase-activating prot 72.0 4.9 0.00011 40.4 4.1 60 18-78 552-612 (671)
133 PRK12309 transaldolase/EF-hand 71.9 8.4 0.00018 36.5 5.6 23 57-79 335-357 (391)
134 KOG4065 Uncharacterized conser 68.6 6 0.00013 31.9 3.2 29 18-46 114-142 (144)
135 KOG3555 Ca2+-binding proteogly 60.3 16 0.00036 34.5 4.9 98 21-127 211-312 (434)
136 PF09069 EF-hand_3: EF-hand; 58.2 79 0.0017 23.9 7.5 60 20-82 2-73 (90)
137 KOG3761 Choline transporter [L 57.9 6.4 0.00014 37.3 1.8 27 197-223 255-288 (591)
138 cd00086 homeodomain Homeodomai 55.3 55 0.0012 21.2 5.8 45 14-64 6-50 (59)
139 PF00046 Homeobox: Homeobox do 54.9 56 0.0012 21.4 5.7 44 14-63 6-49 (57)
140 PF00130 C1_1: Phorbol esters/ 52.9 2.4 5.2E-05 28.0 -1.4 34 90-123 12-45 (53)
141 cd02342 ZZ_UBA_plant Zinc fing 51.5 4.1 8.9E-05 26.9 -0.4 31 91-126 2-33 (43)
142 KOG2996 Rho guanine nucleotide 50.0 9 0.0002 38.5 1.5 33 90-122 535-567 (865)
143 KOG1955 Ral-GTPase effector RA 49.0 22 0.00048 35.2 4.0 42 6-48 251-292 (737)
144 cd02336 ZZ_RSC8 Zinc finger, Z 46.6 6.3 0.00014 26.1 -0.1 34 92-130 3-36 (45)
145 PLN02952 phosphoinositide phos 45.6 74 0.0016 32.1 7.1 52 34-86 13-67 (599)
146 cd00029 C1 Protein kinase C co 44.9 11 0.00023 24.1 0.8 33 90-122 12-44 (50)
147 KOG1280 Uncharacterized conser 43.9 10 0.00022 35.6 0.8 47 89-139 8-55 (381)
148 KOG0696 Serine/threonine prote 43.1 14 0.00031 36.1 1.7 35 88-122 120-154 (683)
149 KOG4286 Dystrophin-like protei 42.5 34 0.00073 35.5 4.2 31 90-125 604-635 (966)
150 smart00109 C1 Protein kinase C 42.5 10 0.00023 23.8 0.5 32 90-122 12-43 (49)
151 KOG0696 Serine/threonine prote 41.3 8.1 0.00018 37.7 -0.3 34 90-123 57-90 (683)
152 PF08414 NADPH_Ox: Respiratory 39.7 1.8E+02 0.0039 22.6 6.9 63 20-86 29-94 (100)
153 KOG3866 DNA-binding protein of 37.8 70 0.0015 30.0 5.2 71 10-82 190-270 (442)
154 PLN02228 Phosphoinositide phos 37.4 1.3E+02 0.0028 30.2 7.3 62 19-82 22-90 (567)
155 KOG4003 Pyrazinamidase/nicotin 36.7 14 0.0003 32.0 0.5 27 115-144 40-66 (223)
156 PLN02222 phosphoinositide phos 36.4 1.1E+02 0.0025 30.6 6.8 59 22-82 26-88 (581)
157 KOG2871 Uncharacterized conser 35.7 27 0.00059 33.3 2.2 61 20-80 308-370 (449)
158 KOG1011 Neurotransmitter relea 35.7 19 0.0004 36.9 1.3 36 90-125 184-219 (1283)
159 PLN02952 phosphoinositide phos 35.6 1.5E+02 0.0033 29.8 7.6 63 19-82 36-108 (599)
160 KOG4578 Uncharacterized conser 34.7 27 0.00059 32.9 2.1 32 18-49 367-398 (421)
161 PF00404 Dockerin_1: Dockerin 34.7 56 0.0012 18.2 2.6 12 67-78 2-13 (21)
162 KOG0169 Phosphoinositide-speci 34.4 2E+02 0.0043 29.8 8.2 78 20-100 171-249 (746)
163 KOG0998 Synaptic vesicle prote 34.0 18 0.0004 37.7 0.9 65 19-84 9-73 (847)
164 PF09279 EF-hand_like: Phospho 33.3 1.1E+02 0.0023 21.7 4.7 43 57-100 1-44 (83)
165 KOG4347 GTPase-activating prot 32.5 61 0.0013 32.9 4.2 32 58-89 557-588 (671)
166 TIGR02787 codY_Gpos GTP-sensin 31.6 2.5E+02 0.0055 25.2 7.6 52 12-68 174-225 (251)
167 PLN02230 phosphoinositide phos 31.3 1.8E+02 0.0038 29.4 7.2 63 19-82 27-100 (598)
168 PF01325 Fe_dep_repress: Iron 31.1 1.6E+02 0.0034 20.2 5.0 53 15-75 2-54 (60)
169 KOG1954 Endocytosis/signaling 29.7 98 0.0021 30.0 4.9 64 22-87 445-508 (532)
170 KOG4004 Matricellular protein 29.2 17 0.00036 32.0 -0.2 55 27-82 193-248 (259)
171 cd08028 LARP_3 La RNA-binding 27.9 90 0.002 23.2 3.5 18 28-46 29-46 (82)
172 PF14513 DAG_kinase_N: Diacylg 26.5 1.1E+02 0.0025 24.8 4.2 46 36-82 6-58 (138)
173 COG5114 Histone acetyltransfer 25.8 37 0.0008 31.9 1.3 41 90-135 6-49 (432)
174 KOG4539 Uncharacterized conser 25.2 60 0.0013 29.0 2.5 38 181-218 162-200 (274)
175 PF08726 EFhand_Ca_insen: Ca2+ 25.2 96 0.0021 22.3 3.2 53 21-80 6-65 (69)
176 KOG4239 Ras GTPase effector RA 24.6 45 0.00098 31.1 1.7 44 90-133 63-113 (348)
177 KOG2419 Phosphatidylserine dec 24.1 59 0.0013 33.4 2.4 71 13-83 429-532 (975)
178 PF09198 T4-Gluco-transf: Bact 23.7 96 0.0021 19.6 2.5 20 183-202 3-22 (38)
179 PRK13747 putative mercury resi 23.1 67 0.0015 23.7 2.0 31 190-220 5-42 (78)
180 cd08032 LARP_7 La RNA-binding 21.3 1E+02 0.0022 23.0 2.7 39 2-46 7-48 (82)
181 COG0353 RecR Recombinational D 21.1 4.1E+02 0.009 23.1 6.8 140 39-198 6-153 (198)
182 PF12419 DUF3670: SNF2 Helicas 21.0 2.4E+02 0.0053 22.5 5.2 48 34-81 80-138 (141)
183 KOG0046 Ca2+-binding actin-bun 20.9 1.6E+02 0.0034 29.6 4.6 31 19-49 55-85 (627)
184 KOG0506 Glutaminase (contains 20.6 2.9E+02 0.0064 27.5 6.3 89 26-114 91-198 (622)
No 1
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.21 E-value=1.3e-10 Score=87.88 Aligned_cols=79 Identities=19% Similarity=0.293 Sum_probs=68.7
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhhc---CCC
Q 027442 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHDENMRTRDFFDKLNINRSGGLDSMEVLTLYYILKS---GRP 90 (223)
Q Consensus 14 ~lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ilks---gr~ 90 (223)
.+++++...++.+|..+|+|++|.|+.+|+..+|+..+. +..++..+|+.+|.+++|.|+|+||+.++..+.. |.+
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~-~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~ 81 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGL-PQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYP 81 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCC-CHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCC
Confidence 478899999999999999999999999999999998876 5556899999999999999999999998876543 654
Q ss_pred cch
Q 027442 91 ICG 93 (223)
Q Consensus 91 ~cd 93 (223)
+..
T Consensus 82 ~~~ 84 (96)
T smart00027 82 IPA 84 (96)
T ss_pred CCc
Confidence 444
No 2
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.18 E-value=9.1e-11 Score=81.93 Aligned_cols=61 Identities=20% Similarity=0.362 Sum_probs=52.0
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC-----cHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 027442 22 LFNQFFQSMDKDGNRRVSYREFADFMSLQAHD-----ENMRTRDFFDKLNINRSGGLDSMEVLTLY 82 (223)
Q Consensus 22 ~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~-----~~~~l~~iFk~~D~DgdG~IdfeEF~~ll 82 (223)
.++++|+.+|+|++|+|+.+||..++...+.. ....+..+|+.+|.|+||.|+++||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 36889999999999999999999999988742 11236677999999999999999998764
No 3
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.06 E-value=6.8e-10 Score=76.91 Aligned_cols=61 Identities=23% Similarity=0.364 Sum_probs=55.1
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHHhcCCCcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHh
Q 027442 24 NQFFQSMDKDGNRRVSYREFADFMSLQAHDENMRTRDFFDKLNINRSGGLDSMEVLTLYYIL 85 (223)
Q Consensus 24 ~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~il 85 (223)
+++|+.+|+|++|.|+.+|+..+++..|. +..++..+|+.+|.+++|.|+++||+.++..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~-~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL-PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC-CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 57899999999999999999999998887 55568999999999999999999999887654
No 4
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.05 E-value=9.6e-10 Score=83.10 Aligned_cols=68 Identities=15% Similarity=0.229 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhhcC-CCCCceeHHHHHHHHHh-cCCC-cH-HHHHHHHHHHcCCCCCcccHHHHHHHHHH
Q 027442 17 DEERRLFNQFFQSMDK-DGNRRVSYREFADFMSL-QAHD-EN-MRTRDFFDKLNINRSGGLDSMEVLTLYYI 84 (223)
Q Consensus 17 ee~~~~l~~iF~~~D~-DgDG~IS~~Ef~~~L~~-~g~~-~~-~~l~~iFk~~D~DgdG~IdfeEF~~ll~i 84 (223)
+.....+..+|+.+|+ +++|+|+.+||+.+|.. +|.. +. .++..+++.+|.|+||.|+|+||+.++..
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 3456678999999999 99999999999999998 6632 33 56999999999999999999999887643
No 5
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.00 E-value=2.6e-09 Score=80.80 Aligned_cols=67 Identities=18% Similarity=0.360 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhc-CCCCC-ceeHHHHHHHHHhc-C-----CCcHHHHHHHHHHHcCCCCCcccHHHHHHHHHH
Q 027442 18 EERRLFNQFFQSMD-KDGNR-RVSYREFADFMSLQ-A-----HDENMRTRDFFDKLNINRSGGLDSMEVLTLYYI 84 (223)
Q Consensus 18 e~~~~l~~iF~~~D-~DgDG-~IS~~Ef~~~L~~~-g-----~~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~i 84 (223)
.....+.++|..+| +|||| +|+.+||+.++... + .....++..+++.+|.|+||.|+|+||+.++..
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 34567778899999 79998 59999999999762 1 124446899999999999999999999987643
No 6
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.98 E-value=3.9e-09 Score=79.36 Aligned_cols=66 Identities=12% Similarity=0.263 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhhc-CCCCC-ceeHHHHHHHHHh-----cCCC-cHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 027442 18 EERRLFNQFFQSMD-KDGNR-RVSYREFADFMSL-----QAHD-ENMRTRDFFDKLNINRSGGLDSMEVLTLYY 83 (223)
Q Consensus 18 e~~~~l~~iF~~~D-~DgDG-~IS~~Ef~~~L~~-----~g~~-~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ 83 (223)
.....+.++|+.+| +||+| .|+.+||+.+|+. +|.. ++.++.++++.+|.|++|.|+|+||+.++.
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 44567889999998 89999 6999999999998 6643 455699999999999999999999988764
No 7
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.94 E-value=4e-09 Score=85.63 Aligned_cols=64 Identities=14% Similarity=0.352 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC-cHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 027442 19 ERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHD-ENMRTRDFFDKLNINRSGGLDSMEVLTLY 82 (223)
Q Consensus 19 ~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~-~~~~l~~iFk~~D~DgdG~IdfeEF~~ll 82 (223)
..+.++++|+.+|+|++|+|+.+||+.+|..+|.. +..++..+++.+|.|+||.|+|+||+.++
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m 147 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMM 147 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHH
Confidence 45699999999999999999999999999999864 45568999999999999999999999876
No 8
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.92 E-value=5.7e-09 Score=84.74 Aligned_cols=71 Identities=24% Similarity=0.404 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC-cHHHHHHHHHHHcCCCCCcccHHHHHHHHHHh
Q 027442 15 GTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHD-ENMRTRDFFDKLNINRSGGLDSMEVLTLYYIL 85 (223)
Q Consensus 15 lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~-~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~il 85 (223)
++.++...++++|+.+|+|++|+|+..||..+++.+|.. +..++..+++.+|.|++|.|+++||+.++...
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~ 73 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKL 73 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhh
Confidence 567888999999999999999999999999999999875 55679999999999999999999999887543
No 9
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.90 E-value=4.7e-09 Score=87.39 Aligned_cols=65 Identities=15% Similarity=0.275 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC-cHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 027442 18 EERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHD-ENMRTRDFFDKLNINRSGGLDSMEVLTLY 82 (223)
Q Consensus 18 e~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~-~~~~l~~iFk~~D~DgdG~IdfeEF~~ll 82 (223)
..+++++.+|+.||+|+||+|+..|++.++..+|.. +.+++..+++.+|.|++|.|+|+||.+++
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 345689999999999999999999999999988754 55679999999999999999999998765
No 10
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.89 E-value=8.7e-09 Score=77.20 Aligned_cols=68 Identities=19% Similarity=0.357 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhhc-CCCCC-ceeHHHHHHHHHh-cCC-----CcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHh
Q 027442 18 EERRLFNQFFQSMD-KDGNR-RVSYREFADFMSL-QAH-----DENMRTRDFFDKLNINRSGGLDSMEVLTLYYIL 85 (223)
Q Consensus 18 e~~~~l~~iF~~~D-~DgDG-~IS~~Ef~~~L~~-~g~-----~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~il 85 (223)
.....++++|+.+| +|++| .|+..||+.+|+. +|. .+..+++.+|+.+|.|++|.|+|+||+.++..+
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 34567899999997 99999 5999999999975 432 144569999999999999999999998876433
No 11
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.86 E-value=2.4e-08 Score=83.16 Aligned_cols=77 Identities=17% Similarity=0.302 Sum_probs=65.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC-cHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhh
Q 027442 9 LAYYNSGTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHD-ENMRTRDFFDKLNINRSGGLDSMEVLTLYYILK 86 (223)
Q Consensus 9 la~~~~lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~-~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ilk 86 (223)
+....++++++.++++++|+.+|+|++|.|+..||..+++.+|.. +...+.++|..+|. ++|.|+|.+|+.++....
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL 85 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh
Confidence 445578999999999999999999999999999999999988864 44568889999988 888999999988875443
No 12
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.85 E-value=1.8e-08 Score=75.81 Aligned_cols=65 Identities=20% Similarity=0.313 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhcC-CC-CCceeHHHHHHHHHh-----cCCC-cHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 027442 19 ERRLFNQFFQSMDK-DG-NRRVSYREFADFMSL-----QAHD-ENMRTRDFFDKLNINRSGGLDSMEVLTLYY 83 (223)
Q Consensus 19 ~~~~l~~iF~~~D~-Dg-DG~IS~~Ef~~~L~~-----~g~~-~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ 83 (223)
....++.+|..+|. || +|+|+.+||+.+|+. +|.. +..++..+|+.+|.+++|.|+|+||+.++.
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 45678899999997 98 699999999999986 2322 445689999999999999999999988763
No 13
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.85 E-value=1.5e-08 Score=74.91 Aligned_cols=67 Identities=15% Similarity=0.270 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhhcC--CCCCceeHHHHHHHHHh-cCCC-----cHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 027442 17 DEERRLFNQFFQSMDK--DGNRRVSYREFADFMSL-QAHD-----ENMRTRDFFDKLNINRSGGLDSMEVLTLYY 83 (223)
Q Consensus 17 ee~~~~l~~iF~~~D~--DgDG~IS~~Ef~~~L~~-~g~~-----~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ 83 (223)
+++.+.++.+|..+|+ |++|.|+.+||..+++. .|.. ...++..+++.+|.+++|.|+|+||+.++.
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~ 78 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIG 78 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHH
Confidence 4677789999999999 89999999999999975 3321 245689999999999999999999998764
No 14
>PTZ00183 centrin; Provisional
Probab=98.83 E-value=4.1e-08 Score=78.15 Aligned_cols=73 Identities=16% Similarity=0.284 Sum_probs=64.1
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC-cHHHHHHHHHHHcCCCCCcccHHHHHHHHHHh
Q 027442 13 NSGTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHD-ENMRTRDFFDKLNINRSGGLDSMEVLTLYYIL 85 (223)
Q Consensus 13 ~~lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~-~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~il 85 (223)
.++++++.+.++.+|..+|.+++|.|+..||..+++..|.. ....+..+|+.+|.+++|.|+++||+.++...
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 82 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKK 82 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHH
Confidence 56788899999999999999999999999999999987752 44458899999999999999999999877644
No 15
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.78 E-value=4.8e-08 Score=73.43 Aligned_cols=68 Identities=15% Similarity=0.303 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhhcC-CC-CCceeHHHHHHHHHh---cCCC-cHHHHHHHHHHHcCCCCCcccHHHHHHHHHHh
Q 027442 18 EERRLFNQFFQSMDK-DG-NRRVSYREFADFMSL---QAHD-ENMRTRDFFDKLNINRSGGLDSMEVLTLYYIL 85 (223)
Q Consensus 18 e~~~~l~~iF~~~D~-Dg-DG~IS~~Ef~~~L~~---~g~~-~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~il 85 (223)
+....+-.+|..+|. || +|+|+.+||+.++.. +|.. +..++.++|+.+|.|++|.|+|+||+.++..+
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 445667789999998 78 899999999999963 4542 55679999999999999999999998876443
No 16
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.76 E-value=5.6e-08 Score=73.29 Aligned_cols=66 Identities=29% Similarity=0.389 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHh-hcCCCCC-ceeHHHHHHHHHhcC------CCcHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 027442 18 EERRLFNQFFQS-MDKDGNR-RVSYREFADFMSLQA------HDENMRTRDFFDKLNINRSGGLDSMEVLTLYY 83 (223)
Q Consensus 18 e~~~~l~~iF~~-~D~DgDG-~IS~~Ef~~~L~~~g------~~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ 83 (223)
.....+..+|+. +|+||+| +|+.+||+.++.... ...+.++.++++.+|.|+||.|+|+||+.++.
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 445677889999 8899987 999999999998751 11334589999999999999999999988764
No 17
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.74 E-value=4.6e-08 Score=77.41 Aligned_cols=64 Identities=14% Similarity=0.242 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCcHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 027442 16 TDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHDENMRTRDFFDKLNINRSGGLDSMEVLTLY 82 (223)
Q Consensus 16 see~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll 82 (223)
.+..+..+..+|..+|.|+||.|+.+|+..++ ++. .+..+..+|+.+|.|+||.||++||..++
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~~-~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LDP-NEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--ccc-hHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 34667789999999999999999999999876 332 33347889999999999999999999876
No 18
>PTZ00184 calmodulin; Provisional
Probab=98.72 E-value=6.8e-08 Score=75.68 Aligned_cols=71 Identities=24% Similarity=0.397 Sum_probs=62.0
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC-cHHHHHHHHHHHcCCCCCcccHHHHHHHHHH
Q 027442 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHD-ENMRTRDFFDKLNINRSGGLDSMEVLTLYYI 84 (223)
Q Consensus 14 ~lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~-~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~i 84 (223)
++++++.+.++..|..+|.+++|.|+.+||..++...+.. ....+..+|+.+|.+++|.|+++||+.++..
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 75 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMAR 75 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHH
Confidence 4678888999999999999999999999999999877653 3446889999999999999999999987643
No 19
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.69 E-value=9.5e-08 Score=62.92 Aligned_cols=60 Identities=20% Similarity=0.354 Sum_probs=52.0
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHhcCCC-cHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 027442 23 FNQFFQSMDKDGNRRVSYREFADFMSLQAHD-ENMRTRDFFDKLNINRSGGLDSMEVLTLY 82 (223)
Q Consensus 23 l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~-~~~~l~~iFk~~D~DgdG~IdfeEF~~ll 82 (223)
+..+|+.+|.+++|.|+++||..+++..+.. +...+..+|+.+|.+++|.|+++||..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999987643 44457889999999999999999997653
No 20
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.63 E-value=1.2e-07 Score=81.65 Aligned_cols=78 Identities=13% Similarity=0.224 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC-cHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhhcCCCcch
Q 027442 16 TDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHD-ENMRTRDFFDKLNINRSGGLDSMEVLTLYYILKSGRPICG 93 (223)
Q Consensus 16 see~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~-~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ilksgr~~cd 93 (223)
+..+++.+..+|+.+|.+.||+|++.|++.+|.++|.+ +...++.+++.+|.|.||+|+|.||+-++....+|...|+
T Consensus 94 srkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~d 172 (244)
T KOG0041|consen 94 SRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQED 172 (244)
T ss_pred HHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccc
Confidence 44678889999999999999999999999999999974 2345789999999999999999999877666666776665
No 21
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.62 E-value=2e-07 Score=79.78 Aligned_cols=66 Identities=17% Similarity=0.304 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhc--CCCcHHHHHHHHHHHcCCCCCcccHHHHHHHHHH
Q 027442 18 EERRLFNQFFQSMDKDGNRRVSYREFADFMSLQ--AHDENMRTRDFFDKLNINRSGGLDSMEVLTLYYI 84 (223)
Q Consensus 18 e~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~--g~~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~i 84 (223)
......+.+|+.+|.|+||.|++.||...+... |. .++.++.+|+.+|.|+||.|+++|++.++..
T Consensus 61 d~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt-~eekl~w~F~lyD~dgdG~It~~Eml~iv~~ 128 (193)
T KOG0044|consen 61 DASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGT-LEEKLKWAFRLYDLDGDGYITKEEMLKIVQA 128 (193)
T ss_pred CHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCc-HHHHhhhhheeecCCCCceEcHHHHHHHHHH
Confidence 455688899999999999999999998877644 33 4455888999999999999999999887643
No 22
>PTZ00183 centrin; Provisional
Probab=98.61 E-value=3.7e-07 Score=72.63 Aligned_cols=63 Identities=19% Similarity=0.379 Sum_probs=44.1
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHhc--CCCcHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 027442 21 RLFNQFFQSMDKDGNRRVSYREFADFMSLQ--AHDENMRTRDFFDKLNINRSGGLDSMEVLTLYY 83 (223)
Q Consensus 21 ~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~--g~~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ 83 (223)
..+..+|..+|.+++|.|+++||..++... .......++.+|+.+|.+++|.|+.+||..++.
T Consensus 53 ~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~ 117 (158)
T PTZ00183 53 EEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAK 117 (158)
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 357777778888888888888887766542 112334567778888888888888888876653
No 23
>PTZ00184 calmodulin; Provisional
Probab=98.59 E-value=4.2e-07 Score=71.15 Aligned_cols=61 Identities=18% Similarity=0.400 Sum_probs=36.1
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHHhcC--CCcHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 027442 22 LFNQFFQSMDKDGNRRVSYREFADFMSLQA--HDENMRTRDFFDKLNINRSGGLDSMEVLTLY 82 (223)
Q Consensus 22 ~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g--~~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll 82 (223)
.+..+|..+|.+++|.|+++||..++.... ......+..+|+.+|.+++|.|+.+||..++
T Consensus 48 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l 110 (149)
T PTZ00184 48 ELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVM 110 (149)
T ss_pred HHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHH
Confidence 556666666666666666666666555321 1122335566666666666666666666554
No 24
>PLN02964 phosphatidylserine decarboxylase
Probab=98.52 E-value=5.7e-07 Score=89.01 Aligned_cols=72 Identities=18% Similarity=0.351 Sum_probs=61.2
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCC-CcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHh
Q 027442 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAH-DENMRTRDFFDKLNINRSGGLDSMEVLTLYYIL 85 (223)
Q Consensus 14 ~lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~-~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~il 85 (223)
..++++...++++|+.+|.|++|.|+++||..+|..++. .+++++.++|+.+|+|++|.|+++||..++...
T Consensus 172 ~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 172 DPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 344555667999999999999999999999999987764 355679999999999999999999999887543
No 25
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.51 E-value=9.2e-07 Score=73.66 Aligned_cols=71 Identities=13% Similarity=0.209 Sum_probs=63.4
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC-cHHHHHHHHHHHcCCCCCcccHHHHHHHHHH
Q 027442 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHD-ENMRTRDFFDKLNINRSGGLDSMEVLTLYYI 84 (223)
Q Consensus 14 ~lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~-~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~i 84 (223)
.+++++++.++..|..||.+++|+|+..||...++.+|.. ...++..++..+|+++.|.|+|++|+..+..
T Consensus 26 ~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~ 97 (172)
T KOG0028|consen 26 ELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTV 97 (172)
T ss_pred cccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHH
Confidence 4677899999999999999999999999999999999975 3456889999999999999999999987643
No 26
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.51 E-value=5.2e-07 Score=60.71 Aligned_cols=50 Identities=12% Similarity=0.246 Sum_probs=43.1
Q ss_pred CCCceeHHHHHHHHHhcCCC--cHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 027442 34 GNRRVSYREFADFMSLQAHD--ENMRTRDFFDKLNINRSGGLDSMEVLTLYY 83 (223)
Q Consensus 34 gDG~IS~~Ef~~~L~~~g~~--~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ 83 (223)
.+|.|+.+||+.+|...|.. ++.++..+|..+|.|++|.|+++||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 47999999999999776643 455699999999999999999999998763
No 27
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=1.8e-06 Score=71.98 Aligned_cols=64 Identities=11% Similarity=0.277 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC-cHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 027442 19 ERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHD-ENMRTRDFFDKLNINRSGGLDSMEVLTLY 82 (223)
Q Consensus 19 ~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~-~~~~l~~iFk~~D~DgdG~IdfeEF~~ll 82 (223)
.+.+++.+|+.+|.|++|.||+.+|+.++..+|.. +.+++.+++..+|.|++|.|+-+||..++
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~im 168 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIM 168 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 55677888888888888888888888888877643 44457888888888888888888887654
No 28
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.36 E-value=1.7e-06 Score=67.25 Aligned_cols=70 Identities=20% Similarity=0.313 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhh
Q 027442 15 GTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHDENMRTRDFFDKLNINRSGGLDSMEVLTLYYILK 86 (223)
Q Consensus 15 lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ilk 86 (223)
++++++..+..+|+.+|. ++|.|+-++...++.+.+. +...+..++...|.|++|.++++||+.+++.+.
T Consensus 4 ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L-~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 4 LSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGL-PRDVLAQIWNLADIDNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp -SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTS-SHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCC-CHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHH
Confidence 567888999999999985 6899999999999998887 555699999999999999999999998887663
No 29
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.32 E-value=9.2e-07 Score=53.51 Aligned_cols=27 Identities=30% Similarity=0.759 Sum_probs=16.7
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHh
Q 027442 23 FNQFFQSMDKDGNRRVSYREFADFMSL 49 (223)
Q Consensus 23 l~~iF~~~D~DgDG~IS~~Ef~~~L~~ 49 (223)
++++|+.+|+|+||+|+++||..+|++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 455666666666666666666666553
No 30
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.29 E-value=3.6e-06 Score=62.95 Aligned_cols=66 Identities=17% Similarity=0.238 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhhcCC--CCCceeHHHHHHHHHh-cCCC-c----HHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 027442 18 EERRLFNQFFQSMDKD--GNRRVSYREFADFMSL-QAHD-E----NMRTRDFFDKLNINRSGGLDSMEVLTLYY 83 (223)
Q Consensus 18 e~~~~l~~iF~~~D~D--gDG~IS~~Ef~~~L~~-~g~~-~----~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ 83 (223)
+....+-.+|..++.. .+|.|+.+||+.+|.. .+.. + ..++..+|+.+|.|++|.|+|+||+.++.
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~ 78 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVI 78 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 3445677789999865 4799999999999974 3321 2 55699999999999999999999998764
No 31
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.28 E-value=5.2e-06 Score=68.92 Aligned_cols=94 Identities=12% Similarity=0.208 Sum_probs=70.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC-cHHHHHHHHHHHcCCCCCcccHHHHHHHHHHh
Q 027442 7 VALAYYNSGTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHD-ENMRTRDFFDKLNINRSGGLDSMEVLTLYYIL 85 (223)
Q Consensus 7 aAla~~~~lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~-~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~il 85 (223)
+.-..+..+.+.|.++++++|+.+|.|+||.|+.++++..+.++|.. +++++..++++ ..|-|+|.-|++++.-.
T Consensus 18 asSnvFamf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGek 93 (171)
T KOG0031|consen 18 ASSNVFAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEK 93 (171)
T ss_pred ccchHHHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHH
Confidence 33445667788899999999999999999999999999999999864 44557777776 57889999999887544
Q ss_pred hcCCCcchhhhhhhhhhhhhhhccccc
Q 027442 86 KSGRPICGQCKTFVTNEYFTCMKCFER 112 (223)
Q Consensus 86 ksgr~~cd~c~~fl~g~~~~~~~C~d~ 112 (223)
-+|.-. ...++..++|||.
T Consensus 94 L~gtdp--------e~~I~~AF~~FD~ 112 (171)
T KOG0031|consen 94 LNGTDP--------EEVILNAFKTFDD 112 (171)
T ss_pred hcCCCH--------HHHHHHHHHhcCc
Confidence 443311 2344566677755
No 32
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.26 E-value=4.9e-06 Score=70.99 Aligned_cols=63 Identities=17% Similarity=0.303 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCC--Cc--HH----HHHHHHHHHcCCCCCcccHHHHHHHH
Q 027442 20 RRLFNQFFQSMDKDGNRRVSYREFADFMSLQAH--DE--NM----RTRDFFDKLNINRSGGLDSMEVLTLY 82 (223)
Q Consensus 20 ~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~--~~--~~----~l~~iFk~~D~DgdG~IdfeEF~~ll 82 (223)
+..++-+|+.+|.+++|+|+.+|+..++..+-. .. .+ -+..+|.++|.|+||.|+|+||..++
T Consensus 103 ~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v 173 (187)
T KOG0034|consen 103 REKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVV 173 (187)
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 357888999999999999999999999887621 12 11 25678999999999999999998775
No 33
>PF14658 EF-hand_9: EF-hand domain
Probab=98.19 E-value=5.2e-06 Score=59.67 Aligned_cols=59 Identities=15% Similarity=0.323 Sum_probs=52.2
Q ss_pred HHHHhhcCCCCCceeHHHHHHHHHhcCC-C-cHHHHHHHHHHHcCCCC-CcccHHHHHHHHH
Q 027442 25 QFFQSMDKDGNRRVSYREFADFMSLQAH-D-ENMRTRDFFDKLNINRS-GGLDSMEVLTLYY 83 (223)
Q Consensus 25 ~iF~~~D~DgDG~IS~~Ef~~~L~~~g~-~-~~~~l~~iFk~~D~Dgd-G~IdfeEF~~ll~ 83 (223)
.+|..+|.++.|.|...++..+|+..+. . ++.+++.+.+.+|.++. |.|+++.|+.+|.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 4699999999999999999999999876 3 45579999999999998 9999999987763
No 34
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.18 E-value=5.9e-06 Score=70.86 Aligned_cols=61 Identities=20% Similarity=0.295 Sum_probs=50.0
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHHhc----CC---C-----cHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 027442 22 LFNQFFQSMDKDGNRRVSYREFADFMSLQ----AH---D-----ENMRTRDFFDKLNINRSGGLDSMEVLTLY 82 (223)
Q Consensus 22 ~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~----g~---~-----~~~~l~~iFk~~D~DgdG~IdfeEF~~ll 82 (223)
.++.+|+.+|.||||+|+.+|+..++.+. +. . ++..+..+|+.+|.|+||.|+++||....
T Consensus 101 kl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~ 173 (193)
T KOG0044|consen 101 KLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGC 173 (193)
T ss_pred HhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHh
Confidence 55567999999999999999999887754 21 1 23457889999999999999999998654
No 35
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.16 E-value=2.7e-06 Score=51.45 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=24.4
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHH
Q 027442 57 RTRDFFDKLNINRSGGLDSMEVLTLYY 83 (223)
Q Consensus 57 ~l~~iFk~~D~DgdG~IdfeEF~~ll~ 83 (223)
+++++|+.+|+|+||+|+++||+.++.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 368899999999999999999998874
No 36
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.13 E-value=1.4e-05 Score=69.45 Aligned_cols=65 Identities=12% Similarity=0.185 Sum_probs=38.2
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC-cHHHHHHHHHHHcCCCCCcccHHHHHHHHHHh
Q 027442 21 RLFNQFFQSMDKDGNRRVSYREFADFMSLQAHD-ENMRTRDFFDKLNINRSGGLDSMEVLTLYYIL 85 (223)
Q Consensus 21 ~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~-~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~il 85 (223)
..++.+|+.+|+|++|.|+..||+..|..+|.. ++.-...+++++|..++|.|.|++|+.++..+
T Consensus 124 ~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 124 NQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL 189 (221)
T ss_pred HHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH
Confidence 345666666666666666666666666666542 22224556666666666666666666655444
No 37
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.10 E-value=1.4e-05 Score=75.17 Aligned_cols=56 Identities=20% Similarity=0.322 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCcHHHHHHHHHHHcCCCCCcccHHHHHHHHHH
Q 027442 17 DEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHDENMRTRDFFDKLNINRSGGLDSMEVLTLYYI 84 (223)
Q Consensus 17 ee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~i 84 (223)
+..+..++.+|+.+|.|+||.|+.+||.. ...+|+.+|.|+||.|+++||..++..
T Consensus 330 ~~~~~~l~~aF~~~D~dgdG~Is~~E~~~------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 330 EAFTHAAQEIFRLYDLDGDGFITREEWLG------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred ChhhHHHHHHHHHhCCCCCCcCcHHHHHH------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 46778899999999999999999999942 357899999999999999999987643
No 38
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.97 E-value=6.6e-05 Score=57.18 Aligned_cols=65 Identities=12% Similarity=0.217 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhc-C-----CCcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHh
Q 027442 20 RRLFNQFFQSMDKDGNRRVSYREFADFMSLQ-A-----HDENMRTRDFFDKLNINRSGGLDSMEVLTLYYIL 85 (223)
Q Consensus 20 ~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~-g-----~~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~il 85 (223)
...+-.+|..+-.+ .+.++..||+.+|.+- + ...+..+.++|+.+|.|+||.|+|+||+.++..+
T Consensus 7 i~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 7 MEKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 34555678888633 5699999999998652 1 1134458999999999999999999999877443
No 39
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.97 E-value=1.3e-05 Score=48.56 Aligned_cols=30 Identities=20% Similarity=0.441 Sum_probs=22.7
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHH-hcC
Q 027442 22 LFNQFFQSMDKDGNRRVSYREFADFMS-LQA 51 (223)
Q Consensus 22 ~l~~iF~~~D~DgDG~IS~~Ef~~~L~-~~g 51 (223)
+++.+|+.+|+|+||+|+.+||..+++ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 367788888888888888888888887 454
No 40
>PLN02964 phosphatidylserine decarboxylase
Probab=97.96 E-value=4.2e-05 Score=76.00 Aligned_cols=68 Identities=15% Similarity=0.192 Sum_probs=56.4
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcC-CC-cHHH---HHHHHHHHcCCCCCcccHHHHHHHHHHh
Q 027442 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQA-HD-ENMR---TRDFFDKLNINRSGGLDSMEVLTLYYIL 85 (223)
Q Consensus 14 ~lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g-~~-~~~~---l~~iFk~~D~DgdG~IdfeEF~~ll~il 85 (223)
.++..+.++++++|..+|+|+||.| +..+++.+| .. ++.+ ++.+|+.+|.|++|.|+++||+.++..+
T Consensus 136 ~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l 208 (644)
T PLN02964 136 DFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF 208 (644)
T ss_pred hccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh
Confidence 3556788999999999999999997 777888888 33 3333 7899999999999999999999887643
No 41
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.91 E-value=3.8e-05 Score=62.85 Aligned_cols=73 Identities=18% Similarity=0.265 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCc-HHHHHHHHHHHcCC--CCCcccHHHHHHHHHHhhc
Q 027442 15 GTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHDE-NMRTRDFFDKLNIN--RSGGLDSMEVLTLYYILKS 87 (223)
Q Consensus 15 lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~~-~~~l~~iFk~~D~D--gdG~IdfeEF~~ll~ilks 87 (223)
.++++..+++++|..||..+||+|+.......|+++|.+| ..++.+....++++ +--.|+|++|+-++..+..
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vak 80 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAK 80 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHh
Confidence 4567789999999999999999999999999999999754 44567777777776 4468999999998866544
No 42
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.88 E-value=3.8e-05 Score=73.05 Aligned_cols=70 Identities=17% Similarity=0.333 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcC----C-CcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhhcC
Q 027442 19 ERRLFNQFFQSMDKDGNRRVSYREFADFMSLQA----H-DENMRTRDFFDKLNINRSGGLDSMEVLTLYYILKSG 88 (223)
Q Consensus 19 ~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g----~-~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ilksg 88 (223)
-+..++.+|+.+|+|+.|.||.+||+...+-++ . -+...+.++-+.+|.|+||.|++.||+.+.+.+..+
T Consensus 545 ~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr~ 619 (631)
T KOG0377|consen 545 NKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDRR 619 (631)
T ss_pred chhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcch
Confidence 356688899999999999999999998766542 1 134457788899999999999999999998877653
No 43
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=97.87 E-value=9.8e-05 Score=64.25 Aligned_cols=68 Identities=19% Similarity=0.265 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC--cHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhhc
Q 027442 20 RRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHD--ENMRTRDFFDKLNINRSGGLDSMEVLTLYYILKS 87 (223)
Q Consensus 20 ~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~--~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ilks 87 (223)
...+...|...|+|+.|+|+-+|++..|.....+ ..+.++.|+.++|.+.+|+|+++||..++.-++.
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~ 125 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQ 125 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHH
Confidence 3478899999999999999999999998754332 3456889999999999999999999999876644
No 44
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.82 E-value=2.7e-05 Score=45.45 Aligned_cols=23 Identities=35% Similarity=0.780 Sum_probs=15.2
Q ss_pred HHHHHhhcCCCCCceeHHHHHHH
Q 027442 24 NQFFQSMDKDGNRRVSYREFADF 46 (223)
Q Consensus 24 ~~iF~~~D~DgDG~IS~~Ef~~~ 46 (223)
+++|+.+|.|+||.|+.+||..+
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45666667777777777666654
No 45
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=97.68 E-value=0.00043 Score=59.14 Aligned_cols=102 Identities=14% Similarity=0.234 Sum_probs=59.3
Q ss_pred HHHHHHhhcCCCCCc-eeHHHHHHHHHhcCC-C-cHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhhc-CCCcchhhhhh
Q 027442 23 FNQFFQSMDKDGNRR-VSYREFADFMSLQAH-D-ENMRTRDFFDKLNINRSGGLDSMEVLTLYYILKS-GRPICGQCKTF 98 (223)
Q Consensus 23 l~~iF~~~D~DgDG~-IS~~Ef~~~L~~~g~-~-~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ilks-gr~~cd~c~~f 98 (223)
..+++..+|.+++|. |++.+|...+...-. . ....++-+|+.+|.+++|.|+.+|+..++..+-. +....+++-.-
T Consensus 68 ~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~ 147 (187)
T KOG0034|consen 68 ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLED 147 (187)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHH
Confidence 445555555555555 666666665553321 1 2235677899999999999999999888765544 22214444444
Q ss_pred hhhhhhhhhcccccCcchhhhhhhhh
Q 027442 99 VTNEYFTCMKCFERQTAAYSICLKCF 124 (223)
Q Consensus 99 l~g~~~~~~~C~d~~~~t~~~c~~~~ 124 (223)
|.+..+.-++-..+|.++|+=.+..+
T Consensus 148 i~d~t~~e~D~d~DG~IsfeEf~~~v 173 (187)
T KOG0034|consen 148 IVDKTFEEADTDGDGKISFEEFCKVV 173 (187)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 45555555555545555555444433
No 46
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=97.68 E-value=0.00017 Score=68.01 Aligned_cols=69 Identities=16% Similarity=0.283 Sum_probs=56.0
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC--cHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 027442 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHD--ENMRTRDFFDKLNINRSGGLDSMEVLTLY 82 (223)
Q Consensus 14 ~lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~--~~~~l~~iFk~~D~DgdG~IdfeEF~~ll 82 (223)
.+.+|....++.+|+.+|.+++|.|+..++...+.++... ....++.+|...|.|.||.+||+||...+
T Consensus 7 ~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~ 77 (463)
T KOG0036|consen 7 ETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYL 77 (463)
T ss_pred CCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHH
Confidence 3456777889999999999999999999999888877653 22346788999999999999999998765
No 47
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=97.68 E-value=0.00011 Score=69.30 Aligned_cols=64 Identities=14% Similarity=0.261 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC-cHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 027442 19 ERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHD-ENMRTRDFFDKLNINRSGGLDSMEVLTLY 82 (223)
Q Consensus 19 ~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~-~~~~l~~iFk~~D~DgdG~IdfeEF~~ll 82 (223)
.+.++..+|+.+|.+.||.|+.+|+..+++.+|.. ..+++..+|+..|+++++.|+++|+...+
T Consensus 80 ~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ 144 (463)
T KOG0036|consen 80 KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHL 144 (463)
T ss_pred hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhh
Confidence 34455666667777777777777776666666643 22345666777777777777777766543
No 48
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.58 E-value=5.4e-05 Score=59.49 Aligned_cols=63 Identities=17% Similarity=0.266 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCcHHHHHHHHHHHcCCCCCcccHHHHHH
Q 027442 17 DEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHDENMRTRDFFDKLNINRSGGLDSMEVLT 80 (223)
Q Consensus 17 ee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~~~~~l~~iFk~~D~DgdG~IdfeEF~~ 80 (223)
...+..+.-.|..+|.|+||.|+..|+..+...+.. .+.=++.+|+..|.|+||.|++.|+..
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~-~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMP-PEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTST-TGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhh-hHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 345677888999999999999999999877654422 222267899999999999999999964
No 49
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.56 E-value=0.00028 Score=68.23 Aligned_cols=75 Identities=20% Similarity=0.302 Sum_probs=64.7
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC----cHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhhc
Q 027442 12 YNSGTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHD----ENMRTRDFFDKLNINRSGGLDSMEVLTLYYILKS 87 (223)
Q Consensus 12 ~~~lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~----~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ilks 87 (223)
..+++.++...+++-|..+| |++|+|+..|+...+.+.+.. ..+++++++...+.|.+|.|+|+||+.++.-+++
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s 88 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKS 88 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhh
Confidence 36788999999999999999 999999999999999887543 2456899999999999999999999987655544
No 50
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.55 E-value=0.00035 Score=47.77 Aligned_cols=49 Identities=20% Similarity=0.459 Sum_probs=38.8
Q ss_pred ceeHHHHHHHHHhcCCC-cHHHHHHHHHHHcCCCCCcccHHHHHHHHHHh
Q 027442 37 RVSYREFADFMSLQAHD-ENMRTRDFFDKLNINRSGGLDSMEVLTLYYIL 85 (223)
Q Consensus 37 ~IS~~Ef~~~L~~~g~~-~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~il 85 (223)
+++++|++.+|+.+++. ....+..+|+..|++++|.|+.+||..++..+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 47899999999998764 33458889999999999999999999877543
No 51
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.53 E-value=0.00011 Score=42.80 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHH
Q 027442 58 TRDFFDKLNINRSGGLDSMEVLTL 81 (223)
Q Consensus 58 l~~iFk~~D~DgdG~IdfeEF~~l 81 (223)
++.+|+.+|.|+||.|+++||.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 357899999999999999999875
No 52
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.46 E-value=0.0003 Score=48.63 Aligned_cols=46 Identities=33% Similarity=0.634 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHhcCC-HHHHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q 027442 2 EALRKVALAYYNSGT-DEERRLFNQFFQSMDKDGNRRVSYREFADFM 47 (223)
Q Consensus 2 ~elrkaAla~~~~ls-ee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L 47 (223)
++|++.........+ ++....++.+|+.+|+|+||.|+++||..++
T Consensus 20 ~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 20 EELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 456666555554443 4566788999999999999999999999875
No 53
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.00028 Score=64.58 Aligned_cols=67 Identities=18% Similarity=0.360 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC--cHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhh
Q 027442 20 RRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHD--ENMRTRDFFDKLNINRSGGLDSMEVLTLYYILK 86 (223)
Q Consensus 20 ~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~--~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ilk 86 (223)
...-+.-|+..|.|+||.++++||..+|..-..+ ...-+.+.+..+|+|+||+|+++||+.=+|...
T Consensus 162 ~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 162 IARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred HHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhcc
Confidence 3455678999999999999999999998643331 223467788999999999999999998776554
No 54
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.42 E-value=0.00036 Score=46.66 Aligned_cols=45 Identities=24% Similarity=0.440 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHhc-CCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHh
Q 027442 2 EALRKVALAYYNS-GTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSL 49 (223)
Q Consensus 2 ~elrkaAla~~~~-lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~ 49 (223)
++|+++....-.. ++++ +++.+|..+|.|++|.|+++||..++..
T Consensus 8 ~~~~~~l~~~g~~~~s~~---e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 8 EEFRRALSKLGIKDLSEE---EVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHHHHTTSSSSCHH---HHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHH---HHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 4566665222233 5555 4889999999999999999999998864
No 55
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.35 E-value=0.00077 Score=56.16 Aligned_cols=63 Identities=10% Similarity=0.303 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCC-CcHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 027442 20 RRLFNQFFQSMDKDGNRRVSYREFADFMSLQAH-DENMRTRDFFDKLNINRSGGLDSMEVLTLY 82 (223)
Q Consensus 20 ~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~-~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll 82 (223)
+..+..+|+.||.++.|.|.-+.|+++|...|- .+.+++..+|+.+-.|..|.|+|.+|..++
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~i 163 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYII 163 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHH
Confidence 457788899999999999999999998887763 255568889999888888999999886554
No 56
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.28 E-value=0.00036 Score=42.09 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=22.8
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHH
Q 027442 58 TRDFFDKLNINRSGGLDSMEVLTLYY 83 (223)
Q Consensus 58 l~~iFk~~D~DgdG~IdfeEF~~ll~ 83 (223)
++.+|+.+|.|++|.|+++||..++.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 67899999999999999999998764
No 57
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.00093 Score=61.20 Aligned_cols=73 Identities=15% Similarity=0.177 Sum_probs=58.3
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCC-CcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHh
Q 027442 13 NSGTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAH-DENMRTRDFFDKLNINRSGGLDSMEVLTLYYIL 85 (223)
Q Consensus 13 ~~lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~-~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~il 85 (223)
..-+++.+..+..++..+|.++||.|+..|++.++...-. .-..++.+-|...|+|.||.|+|+|+...+|.+
T Consensus 69 ~l~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~ 142 (325)
T KOG4223|consen 69 QLTPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGR 142 (325)
T ss_pred hhCcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhc
Confidence 4445578889999999999999999999999998764311 012246677888999999999999999887754
No 58
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.09 E-value=0.0012 Score=70.10 Aligned_cols=68 Identities=21% Similarity=0.366 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC--------cHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 027442 15 GTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHD--------ENMRTRDFFDKLNINRSGGLDSMEVLTLY 82 (223)
Q Consensus 15 lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~--------~~~~l~~iFk~~D~DgdG~IdfeEF~~ll 82 (223)
.++++..++.-+|+.||++.+|+++..+|..+|+.+|++ ++.+.++++..+|.+.+|+|+..+|+++|
T Consensus 2247 VtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2247 VTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred CCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHH
Confidence 477888999999999999999999999999999999864 22257899999999999999999998765
No 59
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.82 E-value=0.00087 Score=59.91 Aligned_cols=63 Identities=16% Similarity=0.306 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC----cHHHHHHHHHHHcCCCCCcccHHHHHH
Q 027442 18 EERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHD----ENMRTRDFFDKLNINRSGGLDSMEVLT 80 (223)
Q Consensus 18 e~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~----~~~~l~~iFk~~D~DgdG~IdfeEF~~ 80 (223)
...+.+..+|+..|.|-||+|+..|++.++...... ..++.+..|+.+|.|+||.|+++||.-
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykv 164 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKV 164 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhh
Confidence 456788999999999999999999999977653110 112356679999999999999999974
No 60
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.75 E-value=0.0021 Score=35.53 Aligned_cols=26 Identities=31% Similarity=0.797 Sum_probs=15.8
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHH
Q 027442 23 FNQFFQSMDKDGNRRVSYREFADFMS 48 (223)
Q Consensus 23 l~~iF~~~D~DgDG~IS~~Ef~~~L~ 48 (223)
++.+|+.+|.+++|.|+++||..+++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 34556666666666666666665554
No 61
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.66 E-value=0.0041 Score=46.91 Aligned_cols=30 Identities=13% Similarity=0.365 Sum_probs=27.5
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHhc
Q 027442 21 RLFNQFFQSMDKDGNRRVSYREFADFMSLQ 50 (223)
Q Consensus 21 ~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~ 50 (223)
..++++++.+|.|+||.|+++||..++..+
T Consensus 47 ~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 47 EGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 679999999999999999999999988765
No 62
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=96.61 E-value=0.0069 Score=49.75 Aligned_cols=60 Identities=12% Similarity=0.216 Sum_probs=45.2
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC-cHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 027442 21 RLFNQFFQSMDKDGNRRVSYREFADFMSLQAHD-ENMRTRDFFDKLNINRSGGLDSMEVLTL 81 (223)
Q Consensus 21 ~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~-~~~~l~~iFk~~D~DgdG~IdfeEF~~l 81 (223)
+.+-+-++.||++++|.|...|++.+|..+|.. +++++..+..- -.|++|.|+|+.|+..
T Consensus 88 edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag-~eD~nG~i~YE~fVk~ 148 (152)
T KOG0030|consen 88 EDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAG-QEDSNGCINYEAFVKH 148 (152)
T ss_pred HHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcc-ccccCCcCcHHHHHHH
Confidence 345566788999999999999999999888753 44456666654 3567889999999764
No 63
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=96.58 E-value=0.0039 Score=46.69 Aligned_cols=49 Identities=12% Similarity=0.398 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhc
Q 027442 2 EALRKVALAYYNSGTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQ 50 (223)
Q Consensus 2 ~elrkaAla~~~~lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~ 50 (223)
++|++....++..+..-..+++.++|+.+|.|++|+|+++||..++..+
T Consensus 32 ~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 32 KELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 4566665443222222234578889999999999999999999888754
No 64
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=96.41 E-value=0.0016 Score=61.94 Aligned_cols=57 Identities=16% Similarity=0.293 Sum_probs=46.3
Q ss_pred hcCCCCCceeHHHHHHHHHhcCCCcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhhc
Q 027442 30 MDKDGNRRVSYREFADFMSLQAHDENMRTRDFFDKLNINRSGGLDSMEVLTLYYILKS 87 (223)
Q Consensus 30 ~D~DgDG~IS~~Ef~~~L~~~g~~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ilks 87 (223)
+|.+.+|.||+.|+.-++.-+.. ++....-+|++||.|+||.|+.+||.....++++
T Consensus 208 ~~lg~~GLIsfSdYiFLlTlLS~-p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~s 264 (489)
T KOG2643|consen 208 YKLGESGLISFSDYIFLLTLLSI-PERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRS 264 (489)
T ss_pred EEcCCCCeeeHHHHHHHHHHHcc-CcccceeeeeeeecCCCCcccHHHHHHHHHHHHh
Confidence 45678899999999888776654 3334567899999999999999999988876655
No 65
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=96.40 E-value=0.015 Score=48.43 Aligned_cols=59 Identities=12% Similarity=0.214 Sum_probs=44.1
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHHhcC---CCcHH---HHHHHHHHHcCCCCCcccHHHHHHHH
Q 027442 24 NQFFQSMDKDGNRRVSYREFADFMSLQA---HDENM---RTRDFFDKLNINRSGGLDSMEVLTLY 82 (223)
Q Consensus 24 ~~iF~~~D~DgDG~IS~~Ef~~~L~~~g---~~~~~---~l~~iFk~~D~DgdG~IdfeEF~~ll 82 (223)
.-+|+.+|-|+|+.|.-.++...+.++- ...++ -..+++.+.|.||||+|++.||..++
T Consensus 111 ~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i 175 (189)
T KOG0038|consen 111 KYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVI 175 (189)
T ss_pred hheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Confidence 3468888888888888888888777652 22221 24678888999999999999998764
No 66
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=96.32 E-value=0.0072 Score=45.47 Aligned_cols=32 Identities=16% Similarity=0.442 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcCCCCCceeHHHHHHHHHhc
Q 027442 19 ERRLFNQFFQSMDKDGNRRVSYREFADFMSLQ 50 (223)
Q Consensus 19 ~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~ 50 (223)
....++++++.+|.|+||.|+++||..++..+
T Consensus 51 ~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 51 DPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred CHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 44589999999999999999999999998765
No 67
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.02 Score=45.93 Aligned_cols=65 Identities=22% Similarity=0.274 Sum_probs=47.3
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhc------CC-----CcHHHHH----HHHHHHcCCCCCcccHHHH
Q 027442 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQ------AH-----DENMRTR----DFFDKLNINRSGGLDSMEV 78 (223)
Q Consensus 14 ~lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~------g~-----~~~~~l~----~iFk~~D~DgdG~IdfeEF 78 (223)
++++++.+. -.|++.|.|++|.|+=-|+...+.-. |. ..+.++. .+++.-|.|+||.|+|.||
T Consensus 62 ~mtpeqlqf--HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEf 139 (144)
T KOG4065|consen 62 KMTPEQLQF--HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEF 139 (144)
T ss_pred hCCHHHHhh--hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHH
Confidence 577776544 46999999999999988888776532 22 1233343 4556678999999999999
Q ss_pred HH
Q 027442 79 LT 80 (223)
Q Consensus 79 ~~ 80 (223)
++
T Consensus 140 lK 141 (144)
T KOG4065|consen 140 LK 141 (144)
T ss_pred Hh
Confidence 75
No 68
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=96.24 E-value=0.047 Score=52.48 Aligned_cols=69 Identities=20% Similarity=0.282 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhcCCCCCceeHHHHHHHHHhc---CCC--------------------------------cH--------
Q 027442 19 ERRLFNQFFQSMDKDGNRRVSYREFADFMSLQ---AHD--------------------------------EN-------- 55 (223)
Q Consensus 19 ~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~---g~~--------------------------------~~-------- 55 (223)
-+..+.+-|+.+|.++.|+|+...+...|+.. +.+ .+
T Consensus 462 ~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 462 HRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 34577888999999999999999998877642 100 00
Q ss_pred -----HHHHHHHHHHcCCCCCcccHHHHHHHHHHhhc
Q 027442 56 -----MRTRDFFDKLNINRSGGLDSMEVLTLYYILKS 87 (223)
Q Consensus 56 -----~~l~~iFk~~D~DgdG~IdfeEF~~ll~ilks 87 (223)
..++.+|+.+|.|+.|.|+.+||.+++..+.+
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~s 578 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSS 578 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHh
Confidence 01456899999999999999999999876654
No 69
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=0.013 Score=56.88 Aligned_cols=74 Identities=15% Similarity=0.226 Sum_probs=65.2
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhhc
Q 027442 13 NSGTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHDENMRTRDFFDKLNINRSGGLDSMEVLTLYYILKS 87 (223)
Q Consensus 13 ~~lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ilks 87 (223)
.++++|+++.+-.-|+.+-.|-.|.|+=.--+.++.+-.. +-.++..|++..|.|.||-|+..||++++.++..
T Consensus 223 w~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSkl-pi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVa 296 (737)
T KOG1955|consen 223 WQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKL-PIEELSHIWELSDVDRDGALTLSEFCAAFHLVVA 296 (737)
T ss_pred cccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccC-chHHHHHHHhhcccCccccccHHHHHhhHhheee
Confidence 5688999999999999999999999998888888887665 4456899999999999999999999999887644
No 70
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.09 E-value=0.0079 Score=33.05 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.9
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHH
Q 027442 58 TRDFFDKLNINRSGGLDSMEVLTLYY 83 (223)
Q Consensus 58 l~~iFk~~D~DgdG~IdfeEF~~ll~ 83 (223)
++.+|+.+|.+++|.|+++||..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 56799999999999999999987753
No 71
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=95.46 E-value=0.036 Score=41.25 Aligned_cols=31 Identities=16% Similarity=0.470 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhc
Q 027442 20 RRLFNQFFQSMDKDGNRRVSYREFADFMSLQ 50 (223)
Q Consensus 20 ~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~ 50 (223)
...+..+|+.+|.|++|.|+++||..++...
T Consensus 50 ~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 50 QKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 5689999999999999999999999988754
No 72
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=95.44 E-value=0.025 Score=42.49 Aligned_cols=31 Identities=10% Similarity=0.437 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhc
Q 027442 20 RRLFNQFFQSMDKDGNRRVSYREFADFMSLQ 50 (223)
Q Consensus 20 ~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~ 50 (223)
...+.++++.+|.|+||.|+++||..++..+
T Consensus 51 ~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 51 PGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4578889999999999999999999988754
No 73
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=95.35 E-value=0.0053 Score=40.57 Aligned_cols=41 Identities=20% Similarity=0.587 Sum_probs=32.9
Q ss_pred cchhhhhhhhhhhhhhhcccccCcchhhhhhhhhccCCCCCCCCCcc
Q 027442 91 ICGQCKTFVTNEYFTCMKCFERQTAAYSICLKCFRDKGGLDHNHARS 137 (223)
Q Consensus 91 ~cd~c~~fl~g~~~~~~~C~d~~~~t~~~c~~~~~~~~~~~H~~~~~ 137 (223)
.|+.|...|.|..+.|.+|+ .|++|..||+..... |+..|.
T Consensus 2 ~C~~C~~~i~g~r~~C~~C~-----d~dLC~~Cf~~~~~~-H~~~H~ 42 (46)
T cd02249 2 SCDGCLKPIVGVRYHCLVCE-----DFDLCSSCYAKGKKG-HPPDHS 42 (46)
T ss_pred CCcCCCCCCcCCEEECCCCC-----CCcCHHHHHCcCcCC-CCCCCC
Confidence 58889999999888888887 599999999977644 655554
No 74
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=95.02 E-value=0.06 Score=40.27 Aligned_cols=31 Identities=19% Similarity=0.652 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhc
Q 027442 20 RRLFNQFFQSMDKDGNRRVSYREFADFMSLQ 50 (223)
Q Consensus 20 ~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~ 50 (223)
...+.++++.+|+|+||.|+++||..++...
T Consensus 50 ~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 50 QEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4568889999999999999999999887643
No 75
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.00 E-value=0.042 Score=41.89 Aligned_cols=31 Identities=10% Similarity=0.299 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhc
Q 027442 20 RRLFNQFFQSMDKDGNRRVSYREFADFMSLQ 50 (223)
Q Consensus 20 ~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~ 50 (223)
...+.++|+.+|.|+||.|+|+||..++..+
T Consensus 47 ~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 47 PMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4578999999999999999999999988765
No 76
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=94.89 E-value=0.083 Score=38.37 Aligned_cols=60 Identities=12% Similarity=0.317 Sum_probs=46.7
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC---cHHHHHHHHHHHcCC----CCCcccHHHHHHHH
Q 027442 22 LFNQFFQSMDKDGNRRVSYREFADFMSLQAHD---ENMRTRDFFDKLNIN----RSGGLDSMEVLTLY 82 (223)
Q Consensus 22 ~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~---~~~~l~~iFk~~D~D----gdG~IdfeEF~~ll 82 (223)
+++.+|..+-. +.+.|+.++|..+|+..... +...+..++..+..+ ..+.+++++|..++
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 46788999955 78999999999999765322 455688889888655 47899999998765
No 77
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=94.80 E-value=0.09 Score=33.71 Aligned_cols=29 Identities=24% Similarity=0.685 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q 027442 19 ERRLFNQFFQSMDKDGNRRVSYREFADFM 47 (223)
Q Consensus 19 ~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L 47 (223)
....+..+|..+|.+++|.|+++||..++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 34 SEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred CHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 34567789999999999999999998765
No 78
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=94.74 E-value=0.075 Score=44.33 Aligned_cols=64 Identities=13% Similarity=0.272 Sum_probs=48.1
Q ss_pred HHHHhhcCCCCCceeHHHHHHHHHhcCCC-c-HHHHHHHHHHHcCCCCCcccHHHHHHHHHHhhcC
Q 027442 25 QFFQSMDKDGNRRVSYREFADFMSLQAHD-E-NMRTRDFFDKLNINRSGGLDSMEVLTLYYILKSG 88 (223)
Q Consensus 25 ~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~-~-~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ilksg 88 (223)
++-..|-.||+|.+++++|..++.-.... + ...+.-+|+.+|-|+|+.|..+++...+..+..+
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~ 140 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRD 140 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhc
Confidence 44455568999999999999987654221 2 2245678999999999999999998877665553
No 79
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.67 E-value=0.027 Score=52.43 Aligned_cols=67 Identities=12% Similarity=0.158 Sum_probs=54.3
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCcHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 027442 13 NSGTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHDENMRTRDFFDKLNINRSGGLDSMEVLTLY 82 (223)
Q Consensus 13 ~~lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll 82 (223)
..+.+--+..+..+|+.+|.|.||.++..|+..+-.. . .+.=++.+|...|...||.|+-.|+...+
T Consensus 242 ~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld--k-nE~CikpFfnsCD~~kDg~iS~~EWC~CF 308 (434)
T KOG3555|consen 242 TSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD--K-NEACIKPFFNSCDTYKDGSISTNEWCYCF 308 (434)
T ss_pred cccCcchhhhhhhhhhccccccccccCHHHhhhhhcc--C-chhHHHHHHhhhcccccCccccchhhhhh
Confidence 3455566788999999999999999999999886542 2 22237889999999999999999998654
No 80
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=94.54 E-value=0.077 Score=39.57 Aligned_cols=32 Identities=13% Similarity=0.413 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhcC
Q 027442 20 RRLFNQFFQSMDKDGNRRVSYREFADFMSLQA 51 (223)
Q Consensus 20 ~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g 51 (223)
...++.+++.+|.|++|.|+++||..++...+
T Consensus 50 ~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 50 PMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 45788899999999999999999999887654
No 81
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.45 E-value=0.059 Score=54.78 Aligned_cols=70 Identities=11% Similarity=0.210 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHh
Q 027442 15 GTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHDENMRTRDFFDKLNINRSGGLDSMEVLTLYYIL 85 (223)
Q Consensus 15 lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~il 85 (223)
.+...+..++.+|+.+|+...|+++-..-+.+|...+. +...+..|+..-|.|+||+|+-+||+-.++++
T Consensus 189 Vp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~L-pq~~LA~IW~LsDvd~DGkL~~dEfilam~li 258 (1118)
T KOG1029|consen 189 VPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGL-PQNQLAHIWTLSDVDGDGKLSADEFILAMHLI 258 (1118)
T ss_pred ccchhhhHHHHHhhhcccccccccccHHHHHHHHhcCC-chhhHhhheeeeccCCCCcccHHHHHHHHHHH
Confidence 34567889999999999999999998888888876666 55557889999999999999999998777654
No 82
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=94.06 E-value=0.073 Score=39.49 Aligned_cols=31 Identities=16% Similarity=0.488 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhc
Q 027442 20 RRLFNQFFQSMDKDGNRRVSYREFADFMSLQ 50 (223)
Q Consensus 20 ~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~ 50 (223)
...++++|+.+|.|++|.|+++||..++..+
T Consensus 51 ~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 51 ADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 4578899999999999999999999988765
No 83
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=93.89 E-value=0.22 Score=47.81 Aligned_cols=76 Identities=17% Similarity=0.331 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhc----------------CCC-cHHH-----------------HHHHHH
Q 027442 18 EERRLFNQFFQSMDKDGNRRVSYREFADFMSLQ----------------AHD-ENMR-----------------TRDFFD 63 (223)
Q Consensus 18 e~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~----------------g~~-~~~~-----------------l~~iFk 63 (223)
.....++++-+.++.+ +-.||++||..+.+-+ |.. ...+ +.-+|.
T Consensus 354 ~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~dfd~Al~fy~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~ 432 (489)
T KOG2643|consen 354 KKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLNDFDIALRFYHMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFT 432 (489)
T ss_pred hHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcccccceeeeEEE
Confidence 3344677777777666 5568999988765422 110 1100 123577
Q ss_pred HHcCCCCCcccHHHHHHHHH-HhhcCC--Ccchh
Q 027442 64 KLNINRSGGLDSMEVLTLYY-ILKSGR--PICGQ 94 (223)
Q Consensus 64 ~~D~DgdG~IdfeEF~~ll~-ilksgr--~~cd~ 94 (223)
.||.|+||.|+.+||+.++. .++.|. +...+
T Consensus 433 IFD~N~Dg~LS~~EFl~Vmk~Rmhrgl~~p~~~g 466 (489)
T KOG2643|consen 433 IFDENNDGTLSHKEFLAVMKRRMHRGLELPKDTG 466 (489)
T ss_pred EEccCCCCcccHHHHHHHHHHHhhccccCCcccc
Confidence 89999999999999999886 455543 44443
No 84
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=93.88 E-value=0.13 Score=34.90 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHh
Q 027442 20 RRLFNQFFQSMDKDGNRRVSYREFADFMSL 49 (223)
Q Consensus 20 ~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~ 49 (223)
...++.+|+.+|.+++|.|+++||..++..
T Consensus 32 ~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 32 RSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred HHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 446888999999999999999999987764
No 85
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=93.86 E-value=0.07 Score=42.15 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 027442 20 RRLFNQFFQSMDKDGNRRVSYREFADFMS 48 (223)
Q Consensus 20 ~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~ 48 (223)
+..+..+|+.+|.|+||.||++||..++.
T Consensus 79 e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 79 EHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 35678899999999999999999999883
No 86
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=93.38 E-value=0.029 Score=36.83 Aligned_cols=32 Identities=25% Similarity=0.771 Sum_probs=28.4
Q ss_pred cchhhhhhhhhhhhhhhcccccCcchhhhhhhhhccC
Q 027442 91 ICGQCKTFVTNEYFTCMKCFERQTAAYSICLKCFRDK 127 (223)
Q Consensus 91 ~cd~c~~fl~g~~~~~~~C~d~~~~t~~~c~~~~~~~ 127 (223)
.|++|+..|.|.-+.|.+|+ .|++|..||...
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~-----d~dLC~~C~~~~ 33 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCP-----DYDLCESCEAKG 33 (43)
T ss_pred CCCCCCCcCcCCeEECCCCC-----CccchHHhhCcC
Confidence 58899999999888999888 399999999976
No 87
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=93.34 E-value=0.16 Score=37.05 Aligned_cols=31 Identities=13% Similarity=0.385 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhc
Q 027442 20 RRLFNQFFQSMDKDGNRRVSYREFADFMSLQ 50 (223)
Q Consensus 20 ~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~ 50 (223)
...+..++..+|.+++|.|+++||..++...
T Consensus 50 ~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 50 PEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4578889999999999999999999988754
No 88
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=93.24 E-value=0.15 Score=49.09 Aligned_cols=75 Identities=24% Similarity=0.441 Sum_probs=54.4
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHHH----hhcCCCCCceeHHHHHHHHHhcC-CCcHHHHHHHHHHHcCCCCCcccHHH
Q 027442 5 RKVALAYY--NSGTDEERRLFNQFFQ----SMDKDGNRRVSYREFADFMSLQA-HDENMRTRDFFDKLNINRSGGLDSME 77 (223)
Q Consensus 5 rkaAla~~--~~lsee~~~~l~~iF~----~~D~DgDG~IS~~Ef~~~L~~~g-~~~~~~l~~iFk~~D~DgdG~IdfeE 77 (223)
-++.++.| ..++ ...++++|+ .+=.-.+|++++++|..++-+.. ..++..++-+|+-+|.+++|.|+..|
T Consensus 296 dk~~L~ry~d~tlt---~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~e 372 (493)
T KOG2562|consen 296 DKEDLKRYGDHTLT---ERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNE 372 (493)
T ss_pred CHHHHHHHhccchh---hHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHH
Confidence 35667777 3343 457788888 33346688899999988776653 23444578899999999999999999
Q ss_pred HHHHH
Q 027442 78 VLTLY 82 (223)
Q Consensus 78 F~~ll 82 (223)
+.-++
T Consensus 373 l~~fy 377 (493)
T KOG2562|consen 373 LRYFY 377 (493)
T ss_pred HHHHH
Confidence 87654
No 89
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=92.85 E-value=0.2 Score=34.26 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhcCCCCCceeHHHHHHHHHhc
Q 027442 19 ERRLFNQFFQSMDKDGNRRVSYREFADFMSLQ 50 (223)
Q Consensus 19 ~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~ 50 (223)
....+..+|+..|++++|++..+||..+++.+
T Consensus 19 ~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 19 DDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp -HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 34578889999999999999999999988753
No 90
>PF06361 RTBV_P12: Rice tungro bacilliform virus P12 protein; InterPro: IPR009417 This family consists of several Rice tungro bacilliform virus P12 proteins. The function of this family is unknown [].
Probab=92.84 E-value=0.082 Score=40.02 Aligned_cols=27 Identities=44% Similarity=0.609 Sum_probs=22.4
Q ss_pred CCCCCCCCCcceeeeCCCCCCCCCCCh
Q 027442 173 RPDHSGSPSNLAIVPYNPNIPGERRNP 199 (223)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
-|.||||+|++||||..+|--|.-.-|
T Consensus 73 ~pttsgs~sagaivpagsntqgqykap 99 (110)
T PF06361_consen 73 IPTTSGSSSAGAIVPAGSNTQGQYKAP 99 (110)
T ss_pred CccCCCCCCcceeeecCCCCcCcccCC
Confidence 467899999999999999987765544
No 91
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=92.32 E-value=0.054 Score=36.62 Aligned_cols=32 Identities=22% Similarity=0.807 Sum_probs=26.4
Q ss_pred cchhhhhhhhhhhhhhhcccccCcchhhhhhhhhccC
Q 027442 91 ICGQCKTFVTNEYFTCMKCFERQTAAYSICLKCFRDK 127 (223)
Q Consensus 91 ~cd~c~~fl~g~~~~~~~C~d~~~~t~~~c~~~~~~~ 127 (223)
.|+.|+..+.|.-+.|++|+| |++|..||...
T Consensus 2 ~CdgC~~~~~~~RykCl~C~d-----~DlC~~Cf~~g 33 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQCTD-----MDLCKTCFLGG 33 (48)
T ss_pred CCCCCCCcCCCceEECCCCCC-----chhHHHHHhCC
Confidence 588898887777678888874 99999999854
No 92
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=92.11 E-value=0.67 Score=45.38 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=41.2
Q ss_pred HhhcCCCCCceeHHHHHHHHHhcCCCcHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 027442 28 QSMDKDGNRRVSYREFADFMSLQAHDENMRTRDFFDKLNINRSGGLDSMEVLTLYY 83 (223)
Q Consensus 28 ~~~D~DgDG~IS~~Ef~~~L~~~g~~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ 83 (223)
...|.-+||.||++||+.+=.-+-. +..-...+|+.||+.++|.++++++..+..
T Consensus 81 ~iaD~tKDglisf~eF~afe~~lC~-pDal~~~aFqlFDr~~~~~vs~~~~~~if~ 135 (694)
T KOG0751|consen 81 SIADQTKDGLISFQEFRAFESVLCA-PDALFEVAFQLFDRLGNGEVSFEDVADIFG 135 (694)
T ss_pred hhhhhcccccccHHHHHHHHhhccC-chHHHHHHHHHhcccCCCceehHHHHHHHh
Confidence 3457788999999999865332222 333356789999999999999999987763
No 93
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=91.95 E-value=0.15 Score=47.48 Aligned_cols=66 Identities=20% Similarity=0.345 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhhcCCCCCceeHHHHH---HHHHhcCCCcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHh
Q 027442 19 ERRLFNQFFQSMDKDGNRRVSYREFA---DFMSLQAHDENMRTRDFFDKLNINRSGGLDSMEVLTLYYIL 85 (223)
Q Consensus 19 ~~~~l~~iF~~~D~DgDG~IS~~Ef~---~~L~~~g~~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~il 85 (223)
++..+...|..+|+|.++.|...|++ .++.+... +..=.+.+|+-.|.|+|-.|++.|++..+..-
T Consensus 331 eeRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~-~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 331 EERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSK-PRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred hhheeeeeeeeecccccCccchhhcchHHHHHHhhcc-HHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 34567778999999999999999864 45554332 33336789999999999999999999887543
No 94
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=91.68 E-value=0.43 Score=47.26 Aligned_cols=75 Identities=17% Similarity=0.157 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC-cHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhhcCC
Q 027442 15 GTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHD-ENMRTRDFFDKLNINRSGGLDSMEVLTLYYILKSGR 89 (223)
Q Consensus 15 lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~-~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ilksgr 89 (223)
+++++-...+.-|..+|.|+.|.++.++....|+..+.. ++....+..++.|.+-+|++...||..++..++.|.
T Consensus 587 ~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~ 662 (680)
T KOG0042|consen 587 LTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGC 662 (680)
T ss_pred cCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCC
Confidence 466777788889999999999999999999999887632 555678899999999999999999999887777654
No 95
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=91.52 E-value=1.1 Score=41.73 Aligned_cols=62 Identities=11% Similarity=0.138 Sum_probs=49.0
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHhcCC--CcHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 027442 21 RLFNQFFQSMDKDGNRRVSYREFADFMSLQAH--DENMRTRDFFDKLNINRSGGLDSMEVLTLY 82 (223)
Q Consensus 21 ~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~--~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll 82 (223)
..++.+|..||.+++|.+++.|....+.-+-. .+..-++-.|+.|+.+.||.+.-.+|-.++
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~il 322 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLIL 322 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHH
Confidence 67888999999999999999887765554322 244557889999999999999988876554
No 96
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=91.05 E-value=0.32 Score=36.26 Aligned_cols=30 Identities=27% Similarity=0.352 Sum_probs=26.2
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHhc
Q 027442 21 RLFNQFFQSMDKDGNRRVSYREFADFMSLQ 50 (223)
Q Consensus 21 ~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~ 50 (223)
.+++.+|..+|.+++|.|+++||..++...
T Consensus 44 ~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 44 TLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 467889999999999999999999987643
No 97
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=90.96 E-value=0.66 Score=35.94 Aligned_cols=38 Identities=21% Similarity=0.430 Sum_probs=28.5
Q ss_pred HHHHH--hcCCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 027442 8 ALAYY--NSGTDEERRLFNQFFQSMDKDGNRRVSYREFADFMS 48 (223)
Q Consensus 8 Ala~~--~~lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~ 48 (223)
|..++ ..|+.+ .+..++...|.|+||+++++||..+|.
T Consensus 31 a~~~f~~S~L~~~---~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 31 AREFFMKSGLPRD---VLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHTTSSHH---HHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHcCCCHH---HHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 34455 446654 677788899999999999999988775
No 98
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=90.84 E-value=0.28 Score=45.61 Aligned_cols=65 Identities=6% Similarity=0.053 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhc-CCCcHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 027442 17 DEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQ-AHDENMRTRDFFDKLNINRSGGLDSMEVLTLY 82 (223)
Q Consensus 17 ee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~-g~~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll 82 (223)
+-...-++-.|+.|+.+-||.+.-.+|..+++.. |. +..++..+|..++...+|+|++++|..++
T Consensus 292 ~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv-~~l~v~~lf~~i~q~d~~ki~~~~f~~fa 357 (412)
T KOG4666|consen 292 PVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGV-EVLRVPVLFPSIEQKDDPKIYASNFRKFA 357 (412)
T ss_pred CCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCc-ceeeccccchhhhcccCcceeHHHHHHHH
Confidence 3344567778999999999999999998888754 54 44456779999999999999999998765
No 99
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=89.38 E-value=0.033 Score=36.88 Aligned_cols=36 Identities=25% Similarity=0.681 Sum_probs=24.8
Q ss_pred Ccchhhhh-hhhhhhhhhhcccccCcchhhhhhhhhccCCCC
Q 027442 90 PICGQCKT-FVTNEYFTCMKCFERQTAAYSICLKCFRDKGGL 130 (223)
Q Consensus 90 ~~cd~c~~-fl~g~~~~~~~C~d~~~~t~~~c~~~~~~~~~~ 130 (223)
..|+.|+. -+.|.-+.|..|. .|++|..||....+.
T Consensus 5 ~~C~~C~~~~i~g~Ry~C~~C~-----d~dLC~~C~~~g~~~ 41 (46)
T PF00569_consen 5 YTCDGCGTDPIIGVRYHCLVCP-----DYDLCEDCFSKGRHS 41 (46)
T ss_dssp CE-SSS-SSSEESSEEEESSSS-----S-EEEHHHHHH--H-
T ss_pred eECcCCCCCcCcCCeEECCCCC-----CCchhhHHHhCcCCC
Confidence 56888887 6788888888886 499999999985444
No 100
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=89.10 E-value=0.59 Score=46.49 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=32.6
Q ss_pred CcchhhhhhhhhhhhhhhcccccCcchhhhhhhhhc
Q 027442 90 PICGQCKTFVTNEYFTCMKCFERQTAAYSICLKCFR 125 (223)
Q Consensus 90 ~~cd~c~~fl~g~~~~~~~C~d~~~~t~~~c~~~~~ 125 (223)
.+||.|+++|+|...++++|+.||.+-++-|.---.
T Consensus 157 tFCD~CGEmL~GLvrQGlKC~gCglNyHKRCa~kip 192 (888)
T KOG4236|consen 157 TFCDFCGEMLFGLVRQGLKCEGCGLNYHKRCAFKIP 192 (888)
T ss_pred hHHHHHHHHHHHHHHccccccCCCCcHhhhhhhcCC
Confidence 899999999999999999999999999998875443
No 101
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.98 E-value=0.21 Score=51.64 Aligned_cols=72 Identities=15% Similarity=0.233 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhhc
Q 027442 15 GTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHDENMRTRDFFDKLNINRSGGLDSMEVLTLYYILKS 87 (223)
Q Consensus 15 lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ilks 87 (223)
+++..+..+.++|...|.+.+|.|+..+....+...|. ....+..++...|.+++|.|++.||...++++..
T Consensus 277 vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl-~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~~ 348 (847)
T KOG0998|consen 277 VSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFGL-SKPRLAHVWLLADTQNTGTLSKDEFALAMHLLEQ 348 (847)
T ss_pred cChHHHHHHHHHHHhccccCCCcccccccccccccCCC-ChhhhhhhhhhcchhccCcccccccchhhhhhhh
Confidence 45677888888999999999999999999998877776 3345788999999999999999999988876644
No 102
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=88.66 E-value=1.8 Score=41.89 Aligned_cols=59 Identities=10% Similarity=0.206 Sum_probs=44.0
Q ss_pred HHHHhhcCCCCCceeHHHHHHHHHhcCCCcHHHHHHHHHHH----cCCCCCcccHHHHHHHHHHh
Q 027442 25 QFFQSMDKDGNRRVSYREFADFMSLQAHDENMRTRDFFDKL----NINRSGGLDSMEVLTLYYIL 85 (223)
Q Consensus 25 ~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~~~~~l~~iFk~~----D~DgdG~IdfeEF~~ll~il 85 (223)
.-|-.+|+|+||.|+.+++..+-.... +..-+.++|..+ =.-.+|.++|++|+.++-.+
T Consensus 282 ~kFweLD~Dhd~lidk~~L~ry~d~tl--t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~ 344 (493)
T KOG2562|consen 282 CKFWELDTDHDGLIDKEDLKRYGDHTL--TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE 344 (493)
T ss_pred HHHhhhccccccccCHHHHHHHhccch--hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh
Confidence 347789999999999999998765332 333378899843 34568999999998766444
No 103
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=88.55 E-value=0.23 Score=33.25 Aligned_cols=42 Identities=24% Similarity=0.686 Sum_probs=28.3
Q ss_pred cchhhhhhhhh-hhhhhhcccccCcchhhhhhhhhccCCC-CCCCCCcc
Q 027442 91 ICGQCKTFVTN-EYFTCMKCFERQTAAYSICLKCFRDKGG-LDHNHARS 137 (223)
Q Consensus 91 ~cd~c~~fl~g-~~~~~~~C~d~~~~t~~~c~~~~~~~~~-~~H~~~~~ 137 (223)
.|+.|..-+.+ ..+.|.+|.+ |++|..||....- ..|...|.
T Consensus 2 ~Cd~C~~~~~~g~r~~C~~C~d-----~dLC~~Cf~~g~~~~~H~~~H~ 45 (49)
T cd02335 2 HCDYCSKDITGTIRIKCAECPD-----FDLCLECFSAGAEIGKHRNDHN 45 (49)
T ss_pred CCCCcCCCCCCCcEEECCCCCC-----cchhHHhhhCcCCCCCCCCCCC
Confidence 47777765554 6667777763 9999999996532 24665554
No 104
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=88.47 E-value=1.3 Score=44.97 Aligned_cols=125 Identities=15% Similarity=0.202 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC-cHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhhcC-------
Q 027442 17 DEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHD-ENMRTRDFFDKLNINRSGGLDSMEVLTLYYILKSG------- 88 (223)
Q Consensus 17 ee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~-~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ilksg------- 88 (223)
+.....+..+|+..|++++|.+++.|...++..+... ....+..+|++.|..++|++..++|..+...+...
T Consensus 132 ~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rpev~~~f 211 (746)
T KOG0169|consen 132 SRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRPEVYFLF 211 (746)
T ss_pred chHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCchHHHHH
Confidence 3566789999999999999999999999988876532 23357889999999999999999998875433211
Q ss_pred --------CCcchhhhhhhhhhhhhhhcccccCcchhhhhhhhh----ccCCCCCCCCCcceeehhHHHHHhhhc
Q 027442 89 --------RPICGQCKTFVTNEYFTCMKCFERQTAAYSICLKCF----RDKGGLDHNHARSYFVDNFSLLESLRK 151 (223)
Q Consensus 89 --------r~~cd~c~~fl~g~~~~~~~C~d~~~~t~~~c~~~~----~~~~~~~H~~~~~~f~dn~~~l~~~~~ 151 (223)
.+.++....|+. -.+- .+..+.+.|.... ..+ +++..+.+.+|+|.-.+-+..
T Consensus 212 ~~~s~~~~~ls~~~L~~Fl~-----~~q~--e~~~~~~~ae~ii~~~e~~k---~~~~~~~l~ldgF~~yL~S~~ 276 (746)
T KOG0169|consen 212 VQYSHGKEYLSTDDLLRFLE-----EEQG--EDGATLDEAEEIIERYEPSK---EFRRHGLLSLDGFTRYLFSPD 276 (746)
T ss_pred HHHhCCCCccCHHHHHHHHH-----Hhcc--cccccHHHHHHHHHHhhhhh---hccccceecHHHHHHHhcCcc
Confidence 133333333333 2211 1234444444443 232 233455799999988666665
No 105
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=87.63 E-value=0.2 Score=33.71 Aligned_cols=42 Identities=17% Similarity=0.575 Sum_probs=31.2
Q ss_pred cchhhhh-hhhhhhhhhhcccccCcchhhhhhhhhccCCCCCCCCCcc
Q 027442 91 ICGQCKT-FVTNEYFTCMKCFERQTAAYSICLKCFRDKGGLDHNHARS 137 (223)
Q Consensus 91 ~cd~c~~-fl~g~~~~~~~C~d~~~~t~~~c~~~~~~~~~~~H~~~~~ 137 (223)
.|+.|+. -|.|.=+.|..|.+ ..|++|..||.... . |..+|.
T Consensus 2 ~Cd~C~~~pI~G~R~~C~~C~~---~d~DlC~~C~~~~~-~-H~~~H~ 44 (48)
T cd02341 2 KCDSCGIEPIPGTRYHCSECDD---GDFDLCQDCVVKGE-S-HQEDHW 44 (48)
T ss_pred CCCCCCCCccccceEECCCCCC---CCCccCHHHHhCcC-C-CCCCCc
Confidence 4777776 67787788888875 45999999999754 4 665554
No 106
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=87.33 E-value=0.18 Score=32.92 Aligned_cols=36 Identities=22% Similarity=0.675 Sum_probs=28.7
Q ss_pred CcchhhhhhhhhhhhhhhcccccCcchhhhhhhhhccCCCC
Q 027442 90 PICGQCKTFVTNEYFTCMKCFERQTAAYSICLKCFRDKGGL 130 (223)
Q Consensus 90 ~~cd~c~~fl~g~~~~~~~C~d~~~~t~~~c~~~~~~~~~~ 130 (223)
..|+.|+.-+.|.-+.|..|. .|++|..||...+..
T Consensus 5 ~~C~~C~~~i~g~ry~C~~C~-----d~dlC~~Cf~~~~~~ 40 (44)
T smart00291 5 YSCDTCGKPIVGVRYHCLVCP-----DYDLCQSCFAKGSAG 40 (44)
T ss_pred cCCCCCCCCCcCCEEECCCCC-----CccchHHHHhCcCcC
Confidence 568888888888877888775 499999999976443
No 107
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=87.30 E-value=0.25 Score=32.77 Aligned_cols=32 Identities=25% Similarity=0.900 Sum_probs=25.7
Q ss_pred cchhhh-hhhhhhhhhhhcccccCcchhhhhhhhhccC
Q 027442 91 ICGQCK-TFVTNEYFTCMKCFERQTAAYSICLKCFRDK 127 (223)
Q Consensus 91 ~cd~c~-~fl~g~~~~~~~C~d~~~~t~~~c~~~~~~~ 127 (223)
.|++|+ .-|.|.=+.|..|.| |++|..||..+
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~d-----yDLC~~C~~~~ 34 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPN-----YDLCTTCYHGD 34 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCC-----ccchHHHhCCC
Confidence 588888 567787778888763 99999999964
No 108
>PF14658 EF-hand_9: EF-hand domain
Probab=86.81 E-value=1.1 Score=32.19 Aligned_cols=30 Identities=17% Similarity=0.399 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhcCCCC-CceeHHHHHHHHHh
Q 027442 20 RRLFNQFFQSMDKDGN-RRVSYREFADFMSL 49 (223)
Q Consensus 20 ~~~l~~iF~~~D~DgD-G~IS~~Ef~~~L~~ 49 (223)
+..++.+.+.+|++|. |.|+++.|..+|+.
T Consensus 34 e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 34 ESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred HHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3489999999999997 99999999999874
No 109
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=86.72 E-value=0.25 Score=33.16 Aligned_cols=32 Identities=25% Similarity=0.942 Sum_probs=26.2
Q ss_pred cchhhh-hhhhhhhhhhhcccccCcchhhhhhhhhccC
Q 027442 91 ICGQCK-TFVTNEYFTCMKCFERQTAAYSICLKCFRDK 127 (223)
Q Consensus 91 ~cd~c~-~fl~g~~~~~~~C~d~~~~t~~~c~~~~~~~ 127 (223)
.|+.|+ .-|.|.-+.|.+|. .|++|..||...
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~-----d~dlC~~Cf~~~ 34 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLICY-----DYDLCADCYDSG 34 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCCC-----CCccchhHHhCC
Confidence 578888 67788878888885 499999999954
No 110
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=86.57 E-value=0.27 Score=33.23 Aligned_cols=41 Identities=34% Similarity=0.923 Sum_probs=28.7
Q ss_pred cchhhhhh-hhhhhhhhhcccccCcchhhhhhhhhccC-CCCCCCCCc
Q 027442 91 ICGQCKTF-VTNEYFTCMKCFERQTAAYSICLKCFRDK-GGLDHNHAR 136 (223)
Q Consensus 91 ~cd~c~~f-l~g~~~~~~~C~d~~~~t~~~c~~~~~~~-~~~~H~~~~ 136 (223)
.|+.|+.. |.|.=+.|++|. .|++|..||..+ ....|..+|
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~-----d~DLC~~Cf~~g~~~~~H~~~H 44 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCF-----NYDLCQSCFFSGRTSKSHKNSH 44 (49)
T ss_pred CCCCCCCCCceeeeEECCCCC-----CcCchHHHHhCCCcCCCCCCCC
Confidence 47788864 777767888887 399999999843 223355444
No 111
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=86.04 E-value=0.37 Score=47.88 Aligned_cols=33 Identities=15% Similarity=0.456 Sum_probs=31.2
Q ss_pred CcchhhhhhhhhhhhhhhcccccCcchhhhhhh
Q 027442 90 PICGQCKTFVTNEYFTCMKCFERQTAAYSICLK 122 (223)
Q Consensus 90 ~~cd~c~~fl~g~~~~~~~C~d~~~~t~~~c~~ 122 (223)
++|..|..+|+|.|.+++||+||..+++.-|..
T Consensus 279 TVCq~CkkLLkGL~rQGlqCkDCk~NcHkrCa~ 311 (888)
T KOG4236|consen 279 TVCQYCKKLLKGLFRQGLQCKDCKFNCHKRCAM 311 (888)
T ss_pred hHHHHHHHHHHHHHhcCcccccCCcchhhhhhh
Confidence 789999999999999999999999999999964
No 112
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=85.81 E-value=1.3 Score=48.32 Aligned_cols=58 Identities=16% Similarity=0.245 Sum_probs=47.8
Q ss_pred HHHHhhcCCCCCceeHHHHHHHHHhcCCCcHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 027442 25 QFFQSMDKDGNRRVSYREFADFMSLQAHDENMRTRDFFDKLNINRSGGLDSMEVLTLY 82 (223)
Q Consensus 25 ~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll 82 (223)
+.|+.+|.||.|.||..+|...|......++.++..++.-...|.+..++|++|+.-+
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 3578899999999999999999986554455567777777788888999999998644
No 113
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=85.25 E-value=2.3 Score=38.42 Aligned_cols=63 Identities=17% Similarity=0.203 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC-cHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 027442 19 ERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHD-ENMRTRDFFDKLNINRSGGLDSMEVLTL 81 (223)
Q Consensus 19 ~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~-~~~~l~~iFk~~D~DgdG~IdfeEF~~l 81 (223)
.+...+++=..+|.|.||.++++|+..++...+.. ...++..++..-|.+++.+++.+|++.-
T Consensus 279 vkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 279 VKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLER 342 (362)
T ss_pred HHHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHHH
Confidence 34556666678899999999999999987654321 2224667778889999999999999754
No 114
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=85.03 E-value=0.36 Score=31.33 Aligned_cols=36 Identities=31% Similarity=0.968 Sum_probs=25.7
Q ss_pred cchhhhhhhhhhhhhhhcccccCcchhhhhhhhhccCCCCCCCCC
Q 027442 91 ICGQCKTFVTNEYFTCMKCFERQTAAYSICLKCFRDKGGLDHNHA 135 (223)
Q Consensus 91 ~cd~c~~fl~g~~~~~~~C~d~~~~t~~~c~~~~~~~~~~~H~~~ 135 (223)
.|+.|... .|.-+.|..|. .|++|..||... -|||+
T Consensus 2 ~C~~C~~~-~~~r~~C~~C~-----dfDLC~~C~~~~---~H~H~ 37 (41)
T cd02337 2 TCNECKHH-VETRWHCTVCE-----DYDLCITCYNTK---NHPHK 37 (41)
T ss_pred cCCCCCCc-CCCceECCCCc-----chhhHHHHhCCC---CCCcc
Confidence 47778774 45556666665 499999999975 47773
No 115
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=84.73 E-value=0.37 Score=43.52 Aligned_cols=43 Identities=21% Similarity=0.622 Sum_probs=35.2
Q ss_pred Ccchhhhh-hhhhhhhhhhcccccCcchhhhhhhhhccCCCCCCCCCcceeeh
Q 027442 90 PICGQCKT-FVTNEYFTCMKCFERQTAAYSICLKCFRDKGGLDHNHARSYFVD 141 (223)
Q Consensus 90 ~~cd~c~~-fl~g~~~~~~~C~d~~~~t~~~c~~~~~~~~~~~H~~~~~~f~d 141 (223)
..||.|+. -|.|.=+.|..|.| ||+|..|+... ++|.++.++-
T Consensus 153 v~CD~C~~~~IvG~RyKC~~C~d-----YDLCe~Ce~~~----~~h~~H~~lR 196 (278)
T KOG4582|consen 153 VPCDNCGKPGIVGARYKCTVCPD-----YDLCERCEAGN----EHHAAHAMLR 196 (278)
T ss_pred ccCCCccCCccccceeeecCCCc-----cchhHHhhcCC----CCCcccceee
Confidence 57999999 89999899999997 99999999984 2344455554
No 116
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=84.34 E-value=4.2 Score=34.56 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHH
Q 027442 57 RTRDFFDKLNINRSGGLDSMEVLTLYY 83 (223)
Q Consensus 57 ~l~~iFk~~D~DgdG~IdfeEF~~ll~ 83 (223)
..+++|.++++.+.+.|++.|+..|+.
T Consensus 97 kFe~iF~kya~~~~d~LT~~E~~~m~~ 123 (174)
T PF05042_consen 97 KFEEIFSKYAKTGPDALTLRELWRMLK 123 (174)
T ss_pred HHHHHHHHhCCCCCCCcCHHHHHHHHH
Confidence 467899999999889999999988764
No 117
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=83.30 E-value=0.37 Score=32.34 Aligned_cols=32 Identities=31% Similarity=0.907 Sum_probs=25.7
Q ss_pred cchhhhh-hhhhhhhhhhcccccCcchhhhhhhhhccC
Q 027442 91 ICGQCKT-FVTNEYFTCMKCFERQTAAYSICLKCFRDK 127 (223)
Q Consensus 91 ~cd~c~~-fl~g~~~~~~~C~d~~~~t~~~c~~~~~~~ 127 (223)
.|+.|.. -|.|.-+.|.+|. .|++|..||...
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~-----dydLC~~Cf~~~ 34 (49)
T cd02345 2 SCSACRKQDISGIRFPCQVCR-----DYSLCLGCYTKG 34 (49)
T ss_pred cCCCCCCCCceEeeEECCCCC-----CcCchHHHHhCC
Confidence 5777877 6678778888885 499999999955
No 118
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.97 E-value=5.5 Score=41.16 Aligned_cols=72 Identities=18% Similarity=0.255 Sum_probs=56.7
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhhc
Q 027442 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHDENMRTRDFFDKLNINRSGGLDSMEVLTLYYILKS 87 (223)
Q Consensus 14 ~lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ilks 87 (223)
..+.+++....+.|..+ +-+.|+|+-+.-+.++-..|..+. -+..|+..-|.|+||+++..||-.+|.+++.
T Consensus 9 avT~~Er~K~~~qF~~L-kp~~gfitg~qArnfflqS~LP~~-VLaqIWALsDldkDGrmdi~EfSIAmkLi~l 80 (1118)
T KOG1029|consen 9 AVTDEERQKHDAQFGQL-KPGQGFITGDQARNFFLQSGLPTP-VLAQIWALSDLDKDGRMDIREFSIAMKLIKL 80 (1118)
T ss_pred ccchHHHHHHHHHHhcc-CCCCCccchHhhhhhHHhcCCChH-HHHHHHHhhhcCccccchHHHHHHHHHHHHH
Confidence 35667777777777766 556899999988888777677444 4788999999999999999999888776544
No 119
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=81.67 E-value=1.7 Score=40.35 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=42.9
Q ss_pred HHHHhhcCCCCCceeHHHHHHHHHhc---CC---CcHHH-----------HHHHHHHHcCCCCCcccHHHHHHHH
Q 027442 25 QFFQSMDKDGNRRVSYREFADFMSLQ---AH---DENMR-----------TRDFFDKLNINRSGGLDSMEVLTLY 82 (223)
Q Consensus 25 ~iF~~~D~DgDG~IS~~Ef~~~L~~~---g~---~~~~~-----------l~~iFk~~D~DgdG~IdfeEF~~ll 82 (223)
.+|...|.|+||.++-.|+..++..- -. +++.+ -..+++.+|.|.|..|+.+||++..
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 46888999999999999998877542 01 11111 1346888999999999999998654
No 120
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=80.59 E-value=3.3 Score=36.37 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=25.4
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHh
Q 027442 57 RTRDFFDKLNINRSGGLDSMEVLTLYYIL 85 (223)
Q Consensus 57 ~l~~iFk~~D~DgdG~IdfeEF~~ll~il 85 (223)
+...+|+.+|.+.||+|++.|+..+|..+
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL 128 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKL 128 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHh
Confidence 46789999999999999999999887544
No 121
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=79.67 E-value=0.97 Score=43.24 Aligned_cols=50 Identities=24% Similarity=0.621 Sum_probs=34.4
Q ss_pred CCCcchhhhhhhhhhh-hhhhcccccCcchhhhhhhhhcc-CCCCCCCCCc-ceeehh
Q 027442 88 GRPICGQCKTFVTNEY-FTCMKCFERQTAAYSICLKCFRD-KGGLDHNHAR-SYFVDN 142 (223)
Q Consensus 88 gr~~cd~c~~fl~g~~-~~~~~C~d~~~~t~~~c~~~~~~-~~~~~H~~~~-~~f~dn 142 (223)
+++.|+.|...|.|.+ +.|.-| -.|++|..||+. .-..-|..+| .=++++
T Consensus 13 ~ky~C~~C~~dit~~i~ikCaeC-----p~fdLCl~CFs~GaE~~~H~~~H~Yrim~~ 65 (438)
T KOG0457|consen 13 GKYNCDYCSLDITGLIRIKCAEC-----PDFDLCLQCFSVGAETGKHQNDHPYRIMDT 65 (438)
T ss_pred CCCCCccHhHHhccceEEEeecC-----CCcchhHHHHhcccccCCCCCCCCceeecC
Confidence 5799999999999987 455555 469999999993 3232344444 335555
No 122
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=77.90 E-value=10 Score=32.26 Aligned_cols=62 Identities=18% Similarity=0.325 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCC--C------cHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 027442 20 RRLFNQFFQSMDKDGNRRVSYREFADFMSLQAH--D------ENMRTRDFFDKLNINRSGGLDSMEVLTLY 82 (223)
Q Consensus 20 ~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~--~------~~~~l~~iFk~~D~DgdG~IdfeEF~~ll 82 (223)
-+..+++|+.+++.+.+.++..|+..+++.... + ...+...++. +-++.||.+..|..+.++
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~-L~~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYI-LAKDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHH-HHcCcCCcEeHHHHhhhc
Confidence 357899999999999999999999999986421 1 1112233333 346778999999886553
No 123
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=77.83 E-value=6.5 Score=41.01 Aligned_cols=70 Identities=13% Similarity=0.059 Sum_probs=54.9
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCcHH---HHHHHH---HHHcCCCCCcccHHHHHHHH
Q 027442 13 NSGTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHDENM---RTRDFF---DKLNINRSGGLDSMEVLTLY 82 (223)
Q Consensus 13 ~~lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~~~~---~l~~iF---k~~D~DgdG~IdfeEF~~ll 82 (223)
.-.++.+..++++.|+.+|+...|..+.++|..++..+|.+.+. -+.++| ...|.+.-|++++.+|...+
T Consensus 739 k~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl 814 (890)
T KOG0035|consen 739 KGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDL 814 (890)
T ss_pred cchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHh
Confidence 44566888999999999999999999999999999988875322 134444 44566777999999998665
No 124
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=77.51 E-value=2.7 Score=32.81 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=20.0
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHH
Q 027442 21 RLFNQFFQSMDKDGNRRVSYREFAD 45 (223)
Q Consensus 21 ~~l~~iF~~~D~DgDG~IS~~Ef~~ 45 (223)
.-++.+|+..|.|+||.||+.|+..
T Consensus 88 ~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 88 HCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3578899999999999999999864
No 125
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=77.12 E-value=18 Score=29.71 Aligned_cols=63 Identities=13% Similarity=0.156 Sum_probs=44.5
Q ss_pred HHHHHhh---cCCCCCceeHHHHHHHHHhcCCC----cHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhh
Q 027442 24 NQFFQSM---DKDGNRRVSYREFADFMSLQAHD----ENMRTRDFFDKLNINRSGGLDSMEVLTLYYILK 86 (223)
Q Consensus 24 ~~iF~~~---D~DgDG~IS~~Ef~~~L~~~g~~----~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ilk 86 (223)
+++|..| -..+...++-..|..+|+..++- +..++.-+|..+-..+...|+|++|+.++..+-
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 3444444 45556789999999999987651 444688899998766677899999998886553
No 126
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=76.98 E-value=27 Score=34.60 Aligned_cols=105 Identities=11% Similarity=0.186 Sum_probs=65.3
Q ss_pred HHHHHHHHHHH---hhcCCCCCceeHHHHHHHHH-hcCCC-cHHHHHHHHH-HHcCCCCCcccHHHHHHHHHHhhcCCCc
Q 027442 18 EERRLFNQFFQ---SMDKDGNRRVSYREFADFMS-LQAHD-ENMRTRDFFD-KLNINRSGGLDSMEVLTLYYILKSGRPI 91 (223)
Q Consensus 18 e~~~~l~~iF~---~~D~DgDG~IS~~Ef~~~L~-~~g~~-~~~~l~~iFk-~~D~DgdG~IdfeEF~~ll~ilksgr~~ 91 (223)
.+..+++.+|- ..++++.-..+-++|....- -.+.. ...++..+.. ..|.-+||-|+|+||+.+-.. .
T Consensus 30 a~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~------l 103 (694)
T KOG0751|consen 30 ADPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESV------L 103 (694)
T ss_pred CChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhh------c
Confidence 34455665554 45677777888888876433 22221 1123444443 457889999999999876322 2
Q ss_pred chhhhhhhhhhhhhhhcccccCcchhhhhhhhhccCCCC
Q 027442 92 CGQCKTFVTNEYFTCMKCFERQTAAYSICLKCFRDKGGL 130 (223)
Q Consensus 92 cd~c~~fl~g~~~~~~~C~d~~~~t~~~c~~~~~~~~~~ 130 (223)
|.. +-+--..|+.++...++..+|+.-...|+.-+..
T Consensus 104 C~p--Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~ 140 (694)
T KOG0751|consen 104 CAP--DALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLH 140 (694)
T ss_pred cCc--hHHHHHHHHHhcccCCCceehHHHHHHHhccccc
Confidence 222 1222244777777777888899889999876544
No 127
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=74.90 E-value=3.2 Score=41.43 Aligned_cols=70 Identities=20% Similarity=0.288 Sum_probs=48.2
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCcHHHHHHHH-HHHcCCCCCcccHHHHHHHHHHh
Q 027442 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHDENMRTRDFF-DKLNINRSGGLDSMEVLTLYYIL 85 (223)
Q Consensus 14 ~lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~~~~~l~~iF-k~~D~DgdG~IdfeEF~~ll~il 85 (223)
.|+++-.+.+.++|..+|.|+||.++-.|+..++...+..+ + ....+ ..--.+..|.++++-|+..|..+
T Consensus 308 ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~p-W-~~~~~~~~t~~~~~G~ltl~g~l~~WsL~ 378 (625)
T KOG1707|consen 308 ELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSP-W-TSSPYKDSTVKNERGWLTLNGFLSQWSLM 378 (625)
T ss_pred eccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCC-C-CCCcccccceecccceeehhhHHHHHHHH
Confidence 35677788999999999999999999999999988653211 0 00000 01112267889998888766443
No 128
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=74.58 E-value=1.1 Score=29.87 Aligned_cols=38 Identities=26% Similarity=0.830 Sum_probs=27.7
Q ss_pred cchhhhh-hhhhhhhhhhcccccCcchhhhhhhhhccCCCCCCCCCc
Q 027442 91 ICGQCKT-FVTNEYFTCMKCFERQTAAYSICLKCFRDKGGLDHNHAR 136 (223)
Q Consensus 91 ~cd~c~~-fl~g~~~~~~~C~d~~~~t~~~c~~~~~~~~~~~H~~~~ 136 (223)
.|+.|+. -|.|.-+.|..|. .|++|..||..+ -|+..|
T Consensus 2 ~Cd~C~~~pI~G~RykC~~C~-----dyDLC~~Cf~~~---~H~~~H 40 (45)
T cd02344 2 TCDGCQMFPINGPRFKCRNCD-----DFDFCENCFKTR---KHNTRH 40 (45)
T ss_pred CCCCCCCCCCccCeEECCCCC-----CccchHHhhCCC---CcCCCC
Confidence 4778875 4777767777776 599999999986 355444
No 129
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=73.81 E-value=8 Score=42.76 Aligned_cols=58 Identities=17% Similarity=0.261 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCC---CcHHHHHHHHHHHcCCCCCcccHHHH
Q 027442 20 RRLFNQFFQSMDKDGNRRVSYREFADFMSLQAH---DENMRTRDFFDKLNINRSGGLDSMEV 78 (223)
Q Consensus 20 ~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~---~~~~~l~~iFk~~D~DgdG~IdfeEF 78 (223)
...++++....|++.+|+|+..|+..+|-+... ....+++.+|+.+|. +.-+|+.++.
T Consensus 2295 ~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~ 2355 (2399)
T KOG0040|consen 2295 EPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA-GKPYVTKEEL 2355 (2399)
T ss_pred ChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc-CCccccHHHH
Confidence 347888999999999999999999999976532 233468999999999 7778888876
No 130
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=73.55 E-value=13 Score=37.34 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCceeHHHHHH
Q 027442 15 GTDEERRLFNQFFQSMDKDGNRRVSYREFAD 45 (223)
Q Consensus 15 lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~ 45 (223)
|.+.-...+.++|+..|.|+||.+|-.|+..
T Consensus 189 lkp~~v~al~RIFki~D~d~D~~Lsd~Eln~ 219 (625)
T KOG1707|consen 189 LKPRCVKALKRIFKISDSDNDGALSDAELND 219 (625)
T ss_pred ccHHHHHHHHHHHhhhccccccccchhhhhH
Confidence 3445567899999999999999999777654
No 131
>PF10173 Mit_KHE1: Mitochondrial K+-H+ exchange-related; InterPro: IPR018786 This entry represents a family of proteins conserved from plants to humans. Their function is not known.
Probab=73.31 E-value=3.2 Score=35.41 Aligned_cols=37 Identities=32% Similarity=0.561 Sum_probs=28.4
Q ss_pred CCcceeeeCCCCCCCCCCChhHHH--HHHHHhhhhHHHHh
Q 027442 180 PSNLAIVPYNPNIPGERRNPWQVY--FRLLEAGLHLASIV 217 (223)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 217 (223)
+.|++|||.-||||+|= +-|+.| +|.+..+-||-+++
T Consensus 148 T~P~~LiPviPNiP~FY-l~yRaysh~rAl~G~k~L~~Ll 186 (187)
T PF10173_consen 148 TLPFALIPVIPNIPFFY-LAYRAYSHWRALQGSKHLQSLL 186 (187)
T ss_pred hcceeeecCCCCccHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999983 334444 67788888887765
No 132
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=71.99 E-value=4.9 Score=40.44 Aligned_cols=60 Identities=12% Similarity=0.208 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC-cHHHHHHHHHHHcCCCCCcccHHHH
Q 027442 18 EERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHD-ENMRTRDFFDKLNINRSGGLDSMEV 78 (223)
Q Consensus 18 e~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~-~~~~l~~iFk~~D~DgdG~IdfeEF 78 (223)
.....++.+|..+|.+++|.|++.+|...+..+... ..+.++-+|+.+|.+++ ..+.+|-
T Consensus 552 ~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 552 VSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 344578889999999999999999998888766332 23357788999999999 8888886
No 133
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=71.94 E-value=8.4 Score=36.54 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCCCCcccHHHHH
Q 027442 57 RTRDFFDKLNINRSGGLDSMEVL 79 (223)
Q Consensus 57 ~l~~iFk~~D~DgdG~IdfeEF~ 79 (223)
.+..+|+.+|.|+||.|+++||+
T Consensus 335 ~l~~aF~~~D~dgdG~Is~~E~~ 357 (391)
T PRK12309 335 AAQEIFRLYDLDGDGFITREEWL 357 (391)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHH
Confidence 47889999999999999999995
No 134
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.63 E-value=6 Score=31.92 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhcCCCCCceeHHHHHHH
Q 027442 18 EERRLFNQFFQSMDKDGNRRVSYREFADF 46 (223)
Q Consensus 18 e~~~~l~~iF~~~D~DgDG~IS~~Ef~~~ 46 (223)
|.+..+..+.+--|.|+||.|++.||...
T Consensus 114 Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 114 ELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 56778899999999999999999999753
No 135
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=60.30 E-value=16 Score=34.47 Aligned_cols=98 Identities=14% Similarity=0.178 Sum_probs=60.0
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHhcCC--C--cHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhhcCCCcchhhh
Q 027442 21 RLFNQFFQSMDKDGNRRVSYREFADFMSLQAH--D--ENMRTRDFFDKLNINRSGGLDSMEVLTLYYILKSGRPICGQCK 96 (223)
Q Consensus 21 ~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~--~--~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ilksgr~~cd~c~ 96 (223)
..+++.|+.+-.|..+......+...-..... . -..++..||..+|.|.||.|+..|+..+. .=+..+ |
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~-ldknE~--C---- 283 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIE-LDKNEA--C---- 283 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhh-ccCchh--H----
Confidence 46788888887777777665555443221111 0 12357899999999999999999987653 222221 1
Q ss_pred hhhhhhhhhhhcccccCcchhhhhhhhhccC
Q 027442 97 TFVTNEYFTCMKCFERQTAAYSICLKCFRDK 127 (223)
Q Consensus 97 ~fl~g~~~~~~~C~d~~~~t~~~c~~~~~~~ 127 (223)
|+-.|.+|-...|.+.++-+-|-.+...+
T Consensus 284 --ikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 284 --IKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred --HHHHHhhhcccccCccccchhhhhhccCC
Confidence 12223345555566677777776554444
No 136
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=58.17 E-value=79 Score=23.94 Aligned_cols=60 Identities=13% Similarity=0.208 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhc-------CCC-----cHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 027442 20 RRLFNQFFQSMDKDGNRRVSYREFADFMSLQ-------AHD-----ENMRTRDFFDKLNINRSGGLDSMEVLTLY 82 (223)
Q Consensus 20 ~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~-------g~~-----~~~~l~~iFk~~D~DgdG~IdfeEF~~ll 82 (223)
.+.++-+|+.+ .|.+|.++...|..+|+.. |.. .+..++..|+.. ...-.|+-++|+..+
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl 73 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWL 73 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHH
Confidence 35678889988 8899999999888877643 211 333577888875 245579999997654
No 137
>KOG3761 consensus Choline transporter [Lipid transport and metabolism]
Probab=57.88 E-value=6.4 Score=37.29 Aligned_cols=27 Identities=44% Similarity=0.891 Sum_probs=16.8
Q ss_pred CChhHHHHHH-HH----hhhhHHHHhh--ccccC
Q 027442 197 RNPWQVYFRL-LE----AGLHLASIVA--GCSVM 223 (223)
Q Consensus 197 ~~~~~~~~~~-~~----~~~~~~~~~~--~~~~~ 223 (223)
.-|||+||.- |. .|...-|.+| ||-+|
T Consensus 255 gipwq~yfqrvlss~sa~~aq~lsfla~~gcilm 288 (591)
T KOG3761|consen 255 GIPWQAYFQRVLSSKSAHGAQTLSFLAAFGCILM 288 (591)
T ss_pred CCcHHHHHHHHHhccccchhHHHHHHHHhchHhe
Confidence 3589999953 32 2444456665 67665
No 138
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=55.30 E-value=55 Score=21.19 Aligned_cols=45 Identities=16% Similarity=0.128 Sum_probs=35.2
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCcHHHHHHHHHH
Q 027442 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHDENMRTRDFFDK 64 (223)
Q Consensus 14 ~lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~~~~~l~~iFk~ 64 (223)
..++++...++..|.. +.+.+..+...+....|. +...+..+|..
T Consensus 6 ~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~l-~~~qV~~WF~n 50 (59)
T cd00086 6 RFTPEQLEELEKEFEK-----NPYPSREEREELAKELGL-TERQVKIWFQN 50 (59)
T ss_pred cCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHCc-CHHHHHHHHHH
Confidence 3567888899999986 568899999988888887 44557777764
No 139
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=54.87 E-value=56 Score=21.37 Aligned_cols=44 Identities=18% Similarity=0.307 Sum_probs=35.1
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCcHHHHHHHHH
Q 027442 14 SGTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHDENMRTRDFFD 63 (223)
Q Consensus 14 ~lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~~~~~l~~iFk 63 (223)
.+++++...++.+|.. +.+++.++...+...+|. +...+..+|.
T Consensus 6 ~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~l-~~~~V~~WF~ 49 (57)
T PF00046_consen 6 RFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELGL-TERQVKNWFQ 49 (57)
T ss_dssp SSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHTS-SHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-----hccccccccccccccccc-cccccccCHH
Confidence 4678899999999974 677899998888888888 5555777775
No 140
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=52.88 E-value=2.4 Score=28.02 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=27.9
Q ss_pred CcchhhhhhhhhhhhhhhcccccCcchhhhhhhh
Q 027442 90 PICGQCKTFVTNEYFTCMKCFERQTAAYSICLKC 123 (223)
Q Consensus 90 ~~cd~c~~fl~g~~~~~~~C~d~~~~t~~~c~~~ 123 (223)
..|+.|+.+|+|...+++.|.+++...+.-|..-
T Consensus 12 ~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 12 TYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp EB-TTSSSBECSSSSCEEEETTTT-EEETTGGCT
T ss_pred CCCcccCcccCCCCCCeEEECCCCChHhhhhhhh
Confidence 6799999999998899999999998888877653
No 141
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=51.47 E-value=4.1 Score=26.93 Aligned_cols=31 Identities=23% Similarity=0.615 Sum_probs=22.1
Q ss_pred cchhhhhh-hhhhhhhhhcccccCcchhhhhhhhhcc
Q 027442 91 ICGQCKTF-VTNEYFTCMKCFERQTAAYSICLKCFRD 126 (223)
Q Consensus 91 ~cd~c~~f-l~g~~~~~~~C~d~~~~t~~~c~~~~~~ 126 (223)
.|++|+.. |.|.=+.|..|. .|++|..||..
T Consensus 2 ~CDgCg~~PI~G~RykC~~C~-----dyDLC~~C~~~ 33 (43)
T cd02342 2 QCDGCGVLPITGPRYKSKVKE-----DYDLCTICFSR 33 (43)
T ss_pred CCCCCCCCcccccceEeCCCC-----CCccHHHHhhh
Confidence 57777753 566555666553 69999999986
No 142
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=50.02 E-value=9 Score=38.51 Aligned_cols=33 Identities=21% Similarity=0.532 Sum_probs=29.8
Q ss_pred CcchhhhhhhhhhhhhhhcccccCcchhhhhhh
Q 027442 90 PICGQCKTFVTNEYFTCMKCFERQTAAYSICLK 122 (223)
Q Consensus 90 ~~cd~c~~fl~g~~~~~~~C~d~~~~t~~~c~~ 122 (223)
..|+.|+-+|.|.|.+++.|+-++...+.-|+.
T Consensus 535 tsCkvC~mllrGtfYQGY~C~~c~~~ahkecl~ 567 (865)
T KOG2996|consen 535 TSCKVCQMLLRGTFYQGYKCEKCGADAHKECLG 567 (865)
T ss_pred cchHHHHHHhhhhhhcceeeeeccccHHHHhcc
Confidence 789999999999999999999999887777764
No 143
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.95 E-value=22 Score=35.18 Aligned_cols=42 Identities=12% Similarity=0.256 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 027442 6 KVALAYYNSGTDEERRLFNQFFQSMDKDGNRRVSYREFADFMS 48 (223)
Q Consensus 6 kaAla~~~~lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~ 48 (223)
.+|+.||+. +.--..++.-++..-|.|+||.+++.||...|.
T Consensus 251 saAknFFtK-Sklpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 251 SAAKNFFTK-SKLPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHhhhhh-ccCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 356667632 111234677788899999999999999988765
No 144
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=46.60 E-value=6.3 Score=26.09 Aligned_cols=34 Identities=21% Similarity=0.483 Sum_probs=23.3
Q ss_pred chhhhhhhhhhhhhhhcccccCcchhhhhhhhhccCCCC
Q 027442 92 CGQCKTFVTNEYFTCMKCFERQTAAYSICLKCFRDKGGL 130 (223)
Q Consensus 92 cd~c~~fl~g~~~~~~~C~d~~~~t~~~c~~~~~~~~~~ 130 (223)
|+.|+.-+..+.+.+.++. .+++|..||...+|.
T Consensus 3 C~~Cg~D~t~vryh~~~~~-----~~dLC~~CF~~G~f~ 36 (45)
T cd02336 3 CFTCGNDCTRVRYHNLKAK-----KYDLCPSCYQEGRFP 36 (45)
T ss_pred ccCCCCccCceEEEecCCC-----ccccChHHHhCcCCC
Confidence 5556666555444444332 699999999998886
No 145
>PLN02952 phosphoinositide phospholipase C
Probab=45.61 E-value=74 Score=32.06 Aligned_cols=52 Identities=13% Similarity=0.245 Sum_probs=35.3
Q ss_pred CCCceeHHHHHHHHHhcCC---CcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhh
Q 027442 34 GNRRVSYREFADFMSLQAH---DENMRTRDFFDKLNINRSGGLDSMEVLTLYYILK 86 (223)
Q Consensus 34 gDG~IS~~Ef~~~L~~~g~---~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ilk 86 (223)
+.|.++++||..+.+.+.. .+..++..+|..+-.+ ++.|+.++|..++...+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q 67 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQ 67 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhC
Confidence 4578888888877765532 1344588888888543 35788888887765433
No 146
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=44.88 E-value=11 Score=24.11 Aligned_cols=33 Identities=12% Similarity=0.361 Sum_probs=28.0
Q ss_pred CcchhhhhhhhhhhhhhhcccccCcchhhhhhh
Q 027442 90 PICGQCKTFVTNEYFTCMKCFERQTAAYSICLK 122 (223)
Q Consensus 90 ~~cd~c~~fl~g~~~~~~~C~d~~~~t~~~c~~ 122 (223)
..|..|+..|+|...+++.|.+++...+.-|..
T Consensus 12 ~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~ 44 (50)
T cd00029 12 TFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCAD 44 (50)
T ss_pred CChhhcchhhhccccceeEcCCCCCchhhhhhc
Confidence 679999999998767999999998888777754
No 147
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=43.94 E-value=10 Score=35.61 Aligned_cols=47 Identities=19% Similarity=0.492 Sum_probs=30.4
Q ss_pred CCcchhhhhhhhhhhhhhhcccccCcchhhhhhhhhccC-CCCCCCCCccee
Q 027442 89 RPICGQCKTFVTNEYFTCMKCFERQTAAYSICLKCFRDK-GGLDHNHARSYF 139 (223)
Q Consensus 89 r~~cd~c~~fl~g~~~~~~~C~d~~~~t~~~c~~~~~~~-~~~~H~~~~~~f 139 (223)
+..|++|..= ..-|.+++|--| ..|++|..||..+ .-.-|++||.+-
T Consensus 8 ~v~CdgC~k~--~~t~rrYkCL~C--~DyDlC~sCyen~~tt~~H~~dHPmq 55 (381)
T KOG1280|consen 8 GVSCDGCGKT--AFTFRRYKCLRC--SDYDLCFSCYENGATTPIHDEDHPMQ 55 (381)
T ss_pred Cceecccccc--ceeeeeeEeeee--cchhHHHHHhhcCCCCcccCCCCcee
Confidence 3678888653 122566666655 5699999999843 334477777643
No 148
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=43.10 E-value=14 Score=36.10 Aligned_cols=35 Identities=17% Similarity=0.420 Sum_probs=30.3
Q ss_pred CCCcchhhhhhhhhhhhhhhcccccCcchhhhhhh
Q 027442 88 GRPICGQCKTFVTNEYFTCMKCFERQTAAYSICLK 122 (223)
Q Consensus 88 gr~~cd~c~~fl~g~~~~~~~C~d~~~~t~~~c~~ 122 (223)
+-++|++|+.+|-|.+-++++|..|..+.+..|..
T Consensus 120 sPTFCDhCGsLLyGl~HQGmKC~~C~mNVH~rCv~ 154 (683)
T KOG0696|consen 120 SPTFCDHCGSLLYGLIHQGMKCDTCDMNVHHRCVE 154 (683)
T ss_pred CCchhhhHHHHHHHHHhcccccccccchHHHHHhh
Confidence 34899999999999999999999998877777754
No 149
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=42.50 E-value=34 Score=35.47 Aligned_cols=31 Identities=32% Similarity=0.800 Sum_probs=23.7
Q ss_pred Ccchhhhhh-hhhhhhhhhcccccCcchhhhhhhhhc
Q 027442 90 PICGQCKTF-VTNEYFTCMKCFERQTAAYSICLKCFR 125 (223)
Q Consensus 90 ~~cd~c~~f-l~g~~~~~~~C~d~~~~t~~~c~~~~~ 125 (223)
..|..|..+ |.|.=+-|.+||+ +++|..||-
T Consensus 604 ~kCniCk~~pIvG~RyR~l~~fn-----~dlCq~CF~ 635 (966)
T KOG4286|consen 604 AKCNICKECPIIGFRYRSLKHFN-----YDICQSCFF 635 (966)
T ss_pred hhcchhhhCccceeeeeehhhcC-----hhHHhhHhh
Confidence 557777776 7777788888886 568888885
No 150
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=42.48 E-value=10 Score=23.85 Aligned_cols=32 Identities=13% Similarity=0.391 Sum_probs=26.9
Q ss_pred CcchhhhhhhhhhhhhhhcccccCcchhhhhhh
Q 027442 90 PICGQCKTFVTNEYFTCMKCFERQTAAYSICLK 122 (223)
Q Consensus 90 ~~cd~c~~fl~g~~~~~~~C~d~~~~t~~~c~~ 122 (223)
..|..|+.+|++.. +++.|.+++.....-|..
T Consensus 12 ~~C~~C~~~i~~~~-~~~~C~~C~~~~H~~C~~ 43 (49)
T smart00109 12 TKCCVCRKSIWGSF-QGLRCSWCKVKCHKKCAE 43 (49)
T ss_pred CCccccccccCcCC-CCcCCCCCCchHHHHHHh
Confidence 67999999999864 789999998888887764
No 151
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=41.28 E-value=8.1 Score=37.72 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=28.8
Q ss_pred CcchhhhhhhhhhhhhhhcccccCcchhhhhhhh
Q 027442 90 PICGQCKTFVTNEYFTCMKCFERQTAAYSICLKC 123 (223)
Q Consensus 90 ~~cd~c~~fl~g~~~~~~~C~d~~~~t~~~c~~~ 123 (223)
++|.+|.+||||.=.+++||--|....+.-|..+
T Consensus 57 TfCsHCkDFiwGfgKQGfQCqvC~fvvHkrChef 90 (683)
T KOG0696|consen 57 TFCSHCKDFIWGFGKQGFQCQVCCFVVHKRCHEF 90 (683)
T ss_pred chhhhhhhheeccccCceeeeEEeehhhhhhcce
Confidence 8899999999999899999998877666666543
No 152
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=39.66 E-value=1.8e+02 Score=22.63 Aligned_cols=63 Identities=13% Similarity=0.302 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCcHHHHHHHHHHHcCC---CCCcccHHHHHHHHHHhh
Q 027442 20 RRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHDENMRTRDFFDKLNIN---RSGGLDSMEVLTLYYILK 86 (223)
Q Consensus 20 ~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~~~~~l~~iFk~~D~D---gdG~IdfeEF~~ll~ilk 86 (223)
=..++.-|..+-+ ||.++.+.|-.++.- + +..+-+.++|..+-+- ..+.|+.+|+..++..+.
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CIGM-~-dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECIGM-K-DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQIS 94 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHHT----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhcCC-c-ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhh
Confidence 3456666777666 899999999987742 1 2344477788776321 246799999988875543
No 153
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=37.82 E-value=70 Score=30.05 Aligned_cols=71 Identities=23% Similarity=0.302 Sum_probs=48.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcC--------CCCCceeHHHHHHHHHhc-CCCc-HHHHHHHHHHHcCCCCCcccHHHHH
Q 027442 10 AYYNSGTDEERRLFNQFFQSMDK--------DGNRRVSYREFADFMSLQ-AHDE-NMRTRDFFDKLNINRSGGLDSMEVL 79 (223)
Q Consensus 10 a~~~~lsee~~~~l~~iF~~~D~--------DgDG~IS~~Ef~~~L~~~-g~~~-~~~l~~iFk~~D~DgdG~IdfeEF~ 79 (223)
.|+.+|++|++++.+.-|...-+ +.-| |.+.+..+.... |.++ ..+.+.+|...|.|+||.++-.|+-
T Consensus 190 ~yL~~l~eE~Rkeaesk~EE~~krH~~HpKvnhPG--SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELE 267 (442)
T KOG3866|consen 190 HYLAQLTEEERKEAESKHEESLKRHNDHPKVNHPG--SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELE 267 (442)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhhccCccCCCCC--cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHH
Confidence 46688999887776666654432 2222 466777766544 4432 2346789999999999999999987
Q ss_pred HHH
Q 027442 80 TLY 82 (223)
Q Consensus 80 ~ll 82 (223)
+++
T Consensus 268 aLF 270 (442)
T KOG3866|consen 268 ALF 270 (442)
T ss_pred HHH
Confidence 765
No 154
>PLN02228 Phosphoinositide phospholipase C
Probab=37.39 E-value=1.3e+02 Score=30.19 Aligned_cols=62 Identities=15% Similarity=0.236 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCC---CcHHHHHHHHHHHcCC----CCCcccHHHHHHHH
Q 027442 19 ERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAH---DENMRTRDFFDKLNIN----RSGGLDSMEVLTLY 82 (223)
Q Consensus 19 ~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~---~~~~~l~~iFk~~D~D----gdG~IdfeEF~~ll 82 (223)
...++..+|..+-. ++.++.++|..+|..... .....+..+|..+... ..|.++.+.|..++
T Consensus 22 ~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 22 PPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred CcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHh
Confidence 34567777777643 358999999999986532 1334477888877543 34679999998765
No 155
>KOG4003 consensus Pyrazinamidase/nicotinamidase PNC1 [Defense mechanisms]
Probab=36.74 E-value=14 Score=32.03 Aligned_cols=27 Identities=15% Similarity=0.028 Sum_probs=20.2
Q ss_pred chhhhhhhhhccCCCCCCCCCcceeehhHH
Q 027442 115 AAYSICLKCFRDKGGLDHNHARSYFVDNFS 144 (223)
Q Consensus 115 ~t~~~c~~~~~~~~~~~H~~~~~~f~dn~~ 144 (223)
+.++-..+.|.-+ ||||+|.+|.-|-+
T Consensus 40 ~d~dw~~Vv~TKD---wHP~~HiSF~~~h~ 66 (223)
T KOG4003|consen 40 ADRDWHRVVVTKD---WHPSRHISFAKNHK 66 (223)
T ss_pred cccccceEEEecc---cCcccceehhhhcc
Confidence 4556566777764 99999999987643
No 156
>PLN02222 phosphoinositide phospholipase C 2
Probab=36.37 E-value=1.1e+02 Score=30.64 Aligned_cols=59 Identities=8% Similarity=0.152 Sum_probs=41.7
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC---cHHHHHHHHHHHcC-CCCCcccHHHHHHHH
Q 027442 22 LFNQFFQSMDKDGNRRVSYREFADFMSLQAHD---ENMRTRDFFDKLNI-NRSGGLDSMEVLTLY 82 (223)
Q Consensus 22 ~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~---~~~~l~~iFk~~D~-DgdG~IdfeEF~~ll 82 (223)
++..+|..+-. ++.++.++|..+|...... ..+.+..+|+.+.. -..+.++++.|..++
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL 88 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYL 88 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHh
Confidence 67777777743 4799999999999865321 34456777777532 245679999998765
No 157
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.73 E-value=27 Score=33.34 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCC--CcHHHHHHHHHHHcCCCCCcccHHHHHH
Q 027442 20 RRLFNQFFQSMDKDGNRRVSYREFADFMSLQAH--DENMRTRDFFDKLNINRSGGLDSMEVLT 80 (223)
Q Consensus 20 ~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~--~~~~~l~~iFk~~D~DgdG~IdfeEF~~ 80 (223)
...+++.|+..|..++|+|+.+-++.+|...+. .....+..+=+.+|..+-|.|-.++|+.
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg 370 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLG 370 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccc
Confidence 457889999999999999999999999987762 2333344444567888777777777653
No 158
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.69 E-value=19 Score=36.94 Aligned_cols=36 Identities=14% Similarity=0.336 Sum_probs=32.4
Q ss_pred CcchhhhhhhhhhhhhhhcccccCcchhhhhhhhhc
Q 027442 90 PICGQCKTFVTNEYFTCMKCFERQTAAYSICLKCFR 125 (223)
Q Consensus 90 ~~cd~c~~fl~g~~~~~~~C~d~~~~t~~~c~~~~~ 125 (223)
.+|-+|++++||.-.+++.|-.|++.+++-|....+
T Consensus 184 t~cyecegllwglarqglrctqc~vk~hdkc~ell~ 219 (1283)
T KOG1011|consen 184 TFCYECEGLLWGLARQGLRCTQCQVKVHDKCRELLS 219 (1283)
T ss_pred chhhhhhhHHHHHhhcccchhhccccHHHHHHHHhh
Confidence 789999999999999999999999999999975443
No 159
>PLN02952 phosphoinositide phospholipase C
Probab=35.56 E-value=1.5e+02 Score=29.84 Aligned_cols=63 Identities=10% Similarity=0.172 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCC---CcHHHHHHHHHHHc-------CCCCCcccHHHHHHHH
Q 027442 19 ERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAH---DENMRTRDFFDKLN-------INRSGGLDSMEVLTLY 82 (223)
Q Consensus 19 ~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~---~~~~~l~~iFk~~D-------~DgdG~IdfeEF~~ll 82 (223)
.+.++..+|..+-. +++.++.++|..+|..... .+..++..+|..+- ..+.+.++++.|..++
T Consensus 36 ~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l 108 (599)
T PLN02952 36 PPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFL 108 (599)
T ss_pred ChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHH
Confidence 45688888888854 4468999999999986532 13344566655431 1233468999998765
No 160
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=34.74 E-value=27 Score=32.88 Aligned_cols=32 Identities=19% Similarity=0.475 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhcCCCCCceeHHHHHHHHHh
Q 027442 18 EERRLFNQFFQSMDKDGNRRVSYREFADFMSL 49 (223)
Q Consensus 18 e~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~ 49 (223)
..++-.+.+|+..|.|+|..||++|++..|..
T Consensus 367 ~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 367 KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred cHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 45677889999999999999999999988754
No 161
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=34.68 E-value=56 Score=18.22 Aligned_cols=12 Identities=17% Similarity=0.667 Sum_probs=5.7
Q ss_pred CCCCCcccHHHH
Q 027442 67 INRSGGLDSMEV 78 (223)
Q Consensus 67 ~DgdG~IdfeEF 78 (223)
.|+||.|+--++
T Consensus 2 vN~DG~vna~D~ 13 (21)
T PF00404_consen 2 VNGDGKVNAIDL 13 (21)
T ss_dssp TTSSSSSSHHHH
T ss_pred CCCCCcCCHHHH
Confidence 444555544444
No 162
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=34.42 E-value=2e+02 Score=29.84 Aligned_cols=78 Identities=10% Similarity=0.148 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhhc-CCCcchhhhhh
Q 027442 20 RRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHDENMRTRDFFDKLNINRSGGLDSMEVLTLYYILKS-GRPICGQCKTF 98 (223)
Q Consensus 20 ~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ilks-gr~~cd~c~~f 98 (223)
...++..|+..|.-++|++...++..+.......+ ++..+|..+-.+ .+.++.++++.++..... +...-+.|..+
T Consensus 171 ~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp--ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~i 247 (746)
T KOG0169|consen 171 ESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP--EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEI 247 (746)
T ss_pred HHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc--hHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHH
Confidence 45678889988999999999999999887765533 477778776444 778888888877755533 22445555566
Q ss_pred hh
Q 027442 99 VT 100 (223)
Q Consensus 99 l~ 100 (223)
|.
T Consensus 248 i~ 249 (746)
T KOG0169|consen 248 IE 249 (746)
T ss_pred HH
Confidence 54
No 163
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.96 E-value=18 Score=37.66 Aligned_cols=65 Identities=20% Similarity=0.328 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCcHHHHHHHHHHHcCCCCCcccHHHHHHHHHH
Q 027442 19 ERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHDENMRTRDFFDKLNINRSGGLDSMEVLTLYYI 84 (223)
Q Consensus 19 ~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~i 84 (223)
....+...|+.+|..++|.|+-.+-..++...|. ....+-.++...|..+.|.++..+|...+..
T Consensus 9 ~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~L-~~qvl~qiws~~d~~~~g~l~~q~f~~~lrl 73 (847)
T KOG0998|consen 9 GQPLFDQYFKSADPQGDGRITGAEAVAFLSKSGL-PDQVLGQIWSLADSSGKGFLNRQGFYAALRL 73 (847)
T ss_pred ccchHHHhhhccCcccCCcccHHHhhhhhhcccc-chhhhhccccccccccCCccccccccccchH
Confidence 3467888999999999999999999988887776 3333566778889999999999999876544
No 164
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=33.28 E-value=1.1e+02 Score=21.73 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHhhcC-CCcchhhhhhhh
Q 027442 57 RTRDFFDKLNINRSGGLDSMEVLTLYYILKSG-RPICGQCKTFVT 100 (223)
Q Consensus 57 ~l~~iFk~~D~DgdG~IdfeEF~~ll~ilksg-r~~cd~c~~fl~ 100 (223)
++..+|..+-. +.+.|+.++|...+.-.... +..-+.|..+|.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~ 44 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIE 44 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHH
Confidence 36789999955 78899999999887544332 234444555544
No 165
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=32.55 E-value=61 Score=32.92 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHhhcCC
Q 027442 58 TRDFFDKLNINRSGGLDSMEVLTLYYILKSGR 89 (223)
Q Consensus 58 l~~iFk~~D~DgdG~IdfeEF~~ll~ilksgr 89 (223)
+..+|..+|.+++|.|+|.+++..+.+++.|.
T Consensus 557 ~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~ 588 (671)
T KOG4347|consen 557 LERLFRLLDDSMTGLLTFKDLVSGLSILKAGD 588 (671)
T ss_pred HHHHHHhcccCCcceeEHHHHHHHHHHHHhhh
Confidence 67899999999999999999999888877753
No 166
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=31.63 E-value=2.5e+02 Score=25.25 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=34.4
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCcHHHHHHHHHHHcCC
Q 027442 12 YNSGTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHDENMRTRDFFDKLNIN 68 (223)
Q Consensus 12 ~~~lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~~~~~l~~iFk~~D~D 68 (223)
+.+||=.+.+.++.++..++.| ||+++..++.+-+ |. ....+.+.++.+...
T Consensus 174 i~tLSySEleAv~~IL~~L~~~-egrlse~eLAerl---GV-SRs~ireAlrkLE~a 225 (251)
T TIGR02787 174 INTLSYSELEAVEHIFEELDGN-EGLLVASKIADRV---GI-TRSVIVNALRKLESA 225 (251)
T ss_pred HHhccHhHHHHHHHHHHHhccc-cccccHHHHHHHH---CC-CHHHHHHHHHHHHHC
Confidence 3677777778888888887543 5788887776544 55 333366777776543
No 167
>PLN02230 phosphoinositide phospholipase C 4
Probab=31.29 E-value=1.8e+02 Score=29.43 Aligned_cols=63 Identities=8% Similarity=0.061 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCC-C---cHHHHHHHHHHHc-------CCCCCcccHHHHHHHH
Q 027442 19 ERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAH-D---ENMRTRDFFDKLN-------INRSGGLDSMEVLTLY 82 (223)
Q Consensus 19 ~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~-~---~~~~l~~iFk~~D-------~DgdG~IdfeEF~~ll 82 (223)
...+++.+|..+-.++ +.++.++|..+|..... . +..++..++..+- +-+.+.++.+.|..++
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL 100 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYL 100 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHH
Confidence 4567888999885443 89999999999987542 1 3334566665442 2234569999998765
No 168
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=31.12 E-value=1.6e+02 Score=20.21 Aligned_cols=53 Identities=11% Similarity=0.225 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCcHHHHHHHHHHHcCCCCCcccH
Q 027442 15 GTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHDENMRTRDFFDKLNINRSGGLDS 75 (223)
Q Consensus 15 lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~~~~~l~~iFk~~D~DgdG~Idf 75 (223)
|++..+..++.+|..-. +.+.++..++...| +. ....+-++++.+... |.|.+
T Consensus 2 Lt~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L---~v-s~~tvt~ml~~L~~~--GlV~~ 54 (60)
T PF01325_consen 2 LTESEEDYLKAIYELSE--EGGPVRTKDIAERL---GV-SPPTVTEMLKRLAEK--GLVEY 54 (60)
T ss_dssp CSCHHHHHHHHHHHHHH--CTSSBBHHHHHHHH---TS--HHHHHHHHHHHHHT--TSEEE
T ss_pred CCcHHHHHHHHHHHHHc--CCCCccHHHHHHHH---CC-ChHHHHHHHHHHHHC--CCEEe
Confidence 56677888999998876 67889999888777 45 333467788877543 44443
No 169
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.71 E-value=98 Score=30.02 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=42.3
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhhc
Q 027442 22 LFNQFFQSMDKDGNRRVSYREFADFMSLQAHDENMRTRDFFDKLNINRSGGLDSMEVLTLYYILKS 87 (223)
Q Consensus 22 ~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ilks 87 (223)
.+.++|-.+-. -||+|+=..-+..|-.... +..-+-.+++..|.|.||.++-+||.-+-+.++.
T Consensus 445 ~yde~fy~l~p-~~gk~sg~~ak~~mv~skl-pnsvlgkiwklad~d~dg~ld~eefala~hli~~ 508 (532)
T KOG1954|consen 445 TYDEIFYTLSP-VNGKLSGRNAKKEMVKSKL-PNSVLGKIWKLADIDKDGMLDDEEFALANHLIKL 508 (532)
T ss_pred chHhhhhcccc-cCceeccchhHHHHHhccC-chhHHHhhhhhhcCCcccCcCHHHHHHHHHHHhe
Confidence 45555654432 3677776665555544333 3334678999999999999999999765555543
No 170
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=29.24 E-value=17 Score=31.99 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=37.9
Q ss_pred HHhhcCC-CCCceeHHHHHHHHHhcCCCcHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 027442 27 FQSMDKD-GNRRVSYREFADFMSLQAHDENMRTRDFFDKLNINRSGGLDSMEVLTLY 82 (223)
Q Consensus 27 F~~~D~D-gDG~IS~~Ef~~~L~~~g~~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll 82 (223)
|-.+|.- .||++|-.|+.-+-..+ ++-+.=+..+|.-.|.|+||.|+.+|+...+
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap~-ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAPL-IPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eccccCCCccccccccccccccCCc-ccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 5566654 48888888876543221 1111125678999999999999999997665
No 171
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=27.91 E-value=90 Score=23.16 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=13.2
Q ss_pred HhhcCCCCCceeHHHHHHH
Q 027442 28 QSMDKDGNRRVSYREFADF 46 (223)
Q Consensus 28 ~~~D~DgDG~IS~~Ef~~~ 46 (223)
+.++.+ +|.|+++.+..+
T Consensus 29 ~~m~~~-~G~Vpl~~i~~F 46 (82)
T cd08028 29 EQIKED-DGWVPMEVMLKF 46 (82)
T ss_pred HHHhcc-CCCEEhHHHhCC
Confidence 455555 899999988764
No 172
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=26.53 E-value=1.1e+02 Score=24.84 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=23.3
Q ss_pred CceeHHHHHHHHHhcCCCcHHHHHHHHHHHcCCC-------CCcccHHHHHHHH
Q 027442 36 RRVSYREFADFMSLQAHDENMRTRDFFDKLNINR-------SGGLDSMEVLTLY 82 (223)
Q Consensus 36 G~IS~~Ef~~~L~~~g~~~~~~l~~iFk~~D~Dg-------dG~IdfeEF~~ll 82 (223)
+.|+..||..+-+-... ....++.+++.|..+| .+.|+|+.|...|
T Consensus 6 ~~lsp~eF~qLq~y~ey-s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm 58 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEY-STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFM 58 (138)
T ss_dssp S-S-HHHHHHHHHHHHH-----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHH
T ss_pred eccCHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHH
Confidence 56777777654332222 1224667777774332 4579999997654
No 173
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=25.78 E-value=37 Score=31.86 Aligned_cols=41 Identities=29% Similarity=0.585 Sum_probs=27.6
Q ss_pred Ccchhhhhhhhhhhh-hhhcccccCcchhhhhhhhhccCC--CCCCCCC
Q 027442 90 PICGQCKTFVTNEYF-TCMKCFERQTAAYSICLKCFRDKG--GLDHNHA 135 (223)
Q Consensus 90 ~~cd~c~~fl~g~~~-~~~~C~d~~~~t~~~c~~~~~~~~--~~~H~~~ 135 (223)
.-|+.|...+.+..+ .|.-|. .|++|..||...- ..|||..
T Consensus 6 ~hCdvC~~d~T~~~~i~C~eC~-----~~DLC~pCF~~g~~tg~H~pyH 49 (432)
T COG5114 6 IHCDVCFLDMTDLTFIKCNECP-----AVDLCLPCFVNGIETGVHSPYH 49 (432)
T ss_pred eeehHHHHhhhcceeeeeeccc-----ccceehhhhhccccccccCCCC
Confidence 558888888877643 455443 5899999998443 3566643
No 174
>KOG4539 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.25 E-value=60 Score=28.96 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=26.7
Q ss_pred CcceeeeCCCCCCCCCCCh-hHHHHHHHHhhhhHHHHhh
Q 027442 181 SNLAIVPYNPNIPGERRNP-WQVYFRLLEAGLHLASIVA 218 (223)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 218 (223)
.|.-++|+-||||||---= --+-||.+....||++++.
T Consensus 162 ipfiliPLiPNiPgFyl~yRaY~n~rA~qGs~~L~~lis 200 (274)
T KOG4539|consen 162 IPFILIPLIPNIPGFYLLYRAYSNWRALQGSEKLLKLIS 200 (274)
T ss_pred chheeeccCCCCCcceehhhhhhhHHHHhhHHHHHHHHh
Confidence 5666889999999994211 1233777888888888764
No 175
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=25.20 E-value=96 Score=22.31 Aligned_cols=53 Identities=9% Similarity=0.185 Sum_probs=32.8
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCcHHHHHHHHHHHc----C---CCCCcccHHHHHH
Q 027442 21 RLFNQFFQSMDKDGNRRVSYREFADFMSLQAHDENMRTRDFFDKLN----I---NRSGGLDSMEVLT 80 (223)
Q Consensus 21 ~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~~~~~l~~iFk~~D----~---DgdG~IdfeEF~~ 80 (223)
+.+.+.|+.+ .++.++|+-.||+..|..-. ++-..+.+. . ...|.++|..|+.
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~pe~------aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLTPEQ------AEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS-CCC------HHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcCcHH------HHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 4677889999 77889999999988765211 122222222 1 1236788888864
No 176
>KOG4239 consensus Ras GTPase effector RASSF2 [Signal transduction mechanisms]
Probab=24.55 E-value=45 Score=31.06 Aligned_cols=44 Identities=14% Similarity=0.281 Sum_probs=33.9
Q ss_pred CcchhhhhhhhhhhhhhhcccccCcchhhhhh-----hhhccC--CCCCCC
Q 027442 90 PICGQCKTFVTNEYFTCMKCFERQTAAYSICL-----KCFRDK--GGLDHN 133 (223)
Q Consensus 90 ~~cd~c~~fl~g~~~~~~~C~d~~~~t~~~c~-----~~~~~~--~~~~H~ 133 (223)
.-|+-|++|++|.+..++.|-.++..+.--|. .|-+.. .-+|||
T Consensus 63 ~~~~~c~~~~~~vl~egL~c~~c~~tch~rcr~lv~ldc~~p~~sS~~w~s 113 (348)
T KOG4239|consen 63 TWCDKCGDFIWGVLREGLLCIHCKFTCHIRCRMLVDLDCRSPPSSSTSWDS 113 (348)
T ss_pred ccchhhhHHHHHHHHHHHhhhhcCCccCHHHHhhhhhhhcCCCCCccCCCC
Confidence 56999999999999999999999988876654 454433 335655
No 177
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=24.10 E-value=59 Score=33.39 Aligned_cols=71 Identities=17% Similarity=0.293 Sum_probs=52.8
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC----------cHHHHHHHHHHHcCCCC------------
Q 027442 13 NSGTDEERRLFNQFFQSMDKDGNRRVSYREFADFMSLQAHD----------ENMRTRDFFDKLNINRS------------ 70 (223)
Q Consensus 13 ~~lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~~g~~----------~~~~l~~iFk~~D~Dgd------------ 70 (223)
+...+-..-...+++..+|.+-|++.++.+|.....+.+.. -..+...+|+.+|.+++
T Consensus 429 e~~v~~~~c~~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs 508 (975)
T KOG2419|consen 429 EDPVETEECFAKRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYS 508 (975)
T ss_pred hccccchhhhhhhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhh
Confidence 44444556677888999999999999999988766554321 00123568999999999
Q ss_pred -----------CcccHHHHHHHHH
Q 027442 71 -----------GGLDSMEVLTLYY 83 (223)
Q Consensus 71 -----------G~IdfeEF~~ll~ 83 (223)
|.++.+|.+.++.
T Consensus 509 ~vS~~~~~~s~~~vtVDe~v~ll~ 532 (975)
T KOG2419|consen 509 YVSYPFLKKSFGVVTVDELVALLA 532 (975)
T ss_pred hccccccccccCeeEHHHHHHHHH
Confidence 9999999988765
No 178
>PF09198 T4-Gluco-transf: Bacteriophage T4 beta-glucosyltransferase; InterPro: IPR015281 Members of this family are DNA-modifying enzymes encoded by bacteriophage T4 that transfer glucose from uridine diphosphoglucose to 5-hydroxymethyl cytosine bases of phage T4 DNA []. ; PDB: 1J39_A 1SXQ_B 1NZF_A 1M5R_B 1JEJ_A 1JIV_A 1NZD_A 1NVK_A 2BGU_A 1JIU_A ....
Probab=23.67 E-value=96 Score=19.59 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=16.0
Q ss_pred ceeeeCCCCCCCCCCChhHH
Q 027442 183 LAIVPYNPNIPGERRNPWQV 202 (223)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~ 202 (223)
+||+-+.+||-||.|-|-.-
T Consensus 3 iai~n~gnni~~fkt~p~se 22 (38)
T PF09198_consen 3 IAIINMGNNIQNFKTTPSSE 22 (38)
T ss_dssp EEEEESSS--SSSSSHHHHH
T ss_pred EEEEecCCceeceeecCccc
Confidence 79999999999999999753
No 179
>PRK13747 putative mercury resistance protein; Provisional
Probab=23.10 E-value=67 Score=23.74 Aligned_cols=31 Identities=32% Similarity=0.473 Sum_probs=21.2
Q ss_pred CCCCCCCCChhHHHHHHHHh----hhhH---HHHhhcc
Q 027442 190 PNIPGERRNPWQVYFRLLEA----GLHL---ASIVAGC 220 (223)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~ 220 (223)
..+|.|++.||.-|+--+-| --|| +..+||-
T Consensus 5 e~~p~e~~~~~~~YlWg~lAvLTCPCHLpiLa~lLAGT 42 (78)
T PRK13747 5 ERLPSETHKPITGYLWGALAVLTCPCHLPILAAVLAGT 42 (78)
T ss_pred ccCChhhcCcchhhhhHHHHHhcCcchHHHHHHHHccc
Confidence 46899999999999864433 3365 4455554
No 180
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=21.34 E-value=1e+02 Score=22.97 Aligned_cols=39 Identities=8% Similarity=0.216 Sum_probs=24.6
Q ss_pred hHHHHHHHHHH---hcCCHHHHHHHHHHHHhhcCCCCCceeHHHHHHH
Q 027442 2 EALRKVALAYY---NSGTDEERRLFNQFFQSMDKDGNRRVSYREFADF 46 (223)
Q Consensus 2 ~elrkaAla~~---~~lsee~~~~l~~iF~~~D~DgDG~IS~~Ef~~~ 46 (223)
++|++.. .|| ++|+.+. -+.+.++++.+|.|+++-+..+
T Consensus 7 ~~I~~Qv-EfYFSd~NL~~D~-----fL~~~~~~~~dG~Vpl~~i~~F 48 (82)
T cd08032 7 ADIAKQV-DFWFGDVNLHKDR-----FLREQIEKSRDGYIDISLLVSF 48 (82)
T ss_pred HHHHHHH-HhhcchhhcccCH-----HHHHHhcCCCCCCEeHHHHhcc
Confidence 4566664 444 5554332 2345678889999998876654
No 181
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=21.09 E-value=4.1e+02 Score=23.07 Aligned_cols=140 Identities=14% Similarity=0.138 Sum_probs=66.4
Q ss_pred eHHHHHHHHHhc-CCCcHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhhcCCCcchhhhhhhhhhhhhhhcccccCcchh
Q 027442 39 SYREFADFMSLQ-AHDENMRTRDFFDKLNINRSGGLDSMEVLTLYYILKSGRPICGQCKTFVTNEYFTCMKCFERQTAAY 117 (223)
Q Consensus 39 S~~Ef~~~L~~~-g~~~~~~l~~iFk~~D~DgdG~IdfeEF~~ll~ilksgr~~cd~c~~fl~g~~~~~~~C~d~~~~t~ 117 (223)
.++++...++++ |..+....+.+|..+..+..+ -++|...+.-.+.....|..|+.|- +-
T Consensus 6 ~i~~LI~~l~kLPGvG~KsA~R~AfhLL~~~~~~---~~~la~al~~a~~~i~~C~~C~~~t----------------e~ 66 (198)
T COG0353 6 PIEKLIDALKKLPGVGPKSAQRLAFHLLQRDRED---VERLAKALLEAKENIKHCSVCGNLT----------------ES 66 (198)
T ss_pred HHHHHHHHHhhCCCCChhHHHHHHHHHHccCHHH---HHHHHHHHHHHHhcCccccccCCcC----------------CC
Confidence 355666667665 333333345678777766433 3444444433344445555555551 22
Q ss_pred hhhhhhhccCCCCCCCCCcceeehhHHHHHhhhcCCCCCccccccCCCCccccCCCCC------CCCCCCc-ceeeeCCC
Q 027442 118 SICLKCFRDKGGLDHNHARSYFVDNFSLLESLRKKPLPNHQVSSRITPSQRTDTSRPD------HSGSPSN-LAIVPYNP 190 (223)
Q Consensus 118 ~~c~~~~~~~~~~~H~~~~~~f~dn~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~ 190 (223)
+.|..|-...+-.. --==+-.--+...|++...-.-..+-|....||-..+....-. --+..+. --|+-+||
T Consensus 67 d~C~ICsd~~Rd~~-~icVVe~p~Dv~a~E~~~~f~G~YhVL~G~lspl~gigpe~l~i~~L~~Rl~~~~~~EvIlAtnp 145 (198)
T COG0353 67 DPCDICSDESRDKS-QLCVVEEPKDVLALEKTGEFRGLYHVLGGLLSPLDGIGPEDLNIDELLQRLAEGSIKEVILATNP 145 (198)
T ss_pred CcCcCcCCcccCCc-eEEEEcchHHHHHHHHhcccCeeEEEecCccCcccCCCcccccHHHHHHHHhcCCCceEEEecCC
Confidence 24444433221110 0000111235556666666555555555555543322100000 0011222 57899999
Q ss_pred CCCCCCCC
Q 027442 191 NIPGERRN 198 (223)
Q Consensus 191 ~~~~~~~~ 198 (223)
++-|++|-
T Consensus 146 TvEGeaTA 153 (198)
T COG0353 146 TVEGEATA 153 (198)
T ss_pred CccchHHH
Confidence 99999884
No 182
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=21.04 E-value=2.4e+02 Score=22.48 Aligned_cols=48 Identities=21% Similarity=0.246 Sum_probs=34.8
Q ss_pred CCCceeHHHHHHHHHhcCC----------CcHHHHHHHHHHHcCCCCCc-ccHHHHHHH
Q 027442 34 GNRRVSYREFADFMSLQAH----------DENMRTRDFFDKLNINRSGG-LDSMEVLTL 81 (223)
Q Consensus 34 gDG~IS~~Ef~~~L~~~g~----------~~~~~l~~iFk~~D~DgdG~-IdfeEF~~l 81 (223)
||..||.+||..++....- -...+++.+.+.+.+-+.+. ++..|.+.+
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 6778999999998876421 04445788888887766654 999888754
No 183
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=20.88 E-value=1.6e+02 Score=29.58 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhcCCCCCceeHHHHHHHHHh
Q 027442 19 ERRLFNQFFQSMDKDGNRRVSYREFADFMSL 49 (223)
Q Consensus 19 ~~~~l~~iF~~~D~DgDG~IS~~Ef~~~L~~ 49 (223)
..++++++....+.|.+|+|+++||..++-.
T Consensus 55 ~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 55 VREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred hHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 4668888899999999999999999986543
No 184
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=20.61 E-value=2.9e+02 Score=27.50 Aligned_cols=89 Identities=11% Similarity=0.219 Sum_probs=52.1
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHhcCCCcH-HHHHHHHH---HHcC-----CCCCcccHHHHHHHHH----Hh-hc---C
Q 027442 26 FFQSMDKDGNRRVSYREFADFMSLQAHDEN-MRTRDFFD---KLNI-----NRSGGLDSMEVLTLYY----IL-KS---G 88 (223)
Q Consensus 26 iF~~~D~DgDG~IS~~Ef~~~L~~~g~~~~-~~l~~iFk---~~D~-----DgdG~IdfeEF~~ll~----il-ks---g 88 (223)
+|..+-.-..++|++--|..+|++.|..+. -.++.+++ .+|+ ...+.++.+-|..++. ++ ++ .
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sSI~lvSqALrkq 170 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSSIVLVSQALRKQ 170 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccchhHHHHHHhcC
Confidence 344443344599999999999999986311 12555553 3453 2345799999998762 11 11 1
Q ss_pred CCcch--hhhhhhhhhhhhhhcccccCc
Q 027442 89 RPICG--QCKTFVTNEYFTCMKCFERQT 114 (223)
Q Consensus 89 r~~cd--~c~~fl~g~~~~~~~C~d~~~ 114 (223)
-.+++ .+...|+..|-+|-.|.+..+
T Consensus 171 mVIPdw~~Fts~I~tIFEscke~seG~v 198 (622)
T KOG0506|consen 171 MVIPDWEEFTSHIDTIFESCKESSEGKV 198 (622)
T ss_pred ccCCcHHHHHHHHHHHHHHHHhcCCccH
Confidence 13333 233446666667777766543
Done!