Query 027443
Match_columns 223
No_of_seqs 167 out of 1200
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 10:01:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027443.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027443hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14857 tatA twin arginine tr 99.8 1.4E-19 3.1E-24 140.1 9.0 50 120-169 1-50 (90)
2 PRK14858 tatA twin arginine tr 99.8 1.9E-19 4E-24 143.5 8.8 48 122-169 1-48 (108)
3 PRK00404 tatB sec-independent 99.8 1.3E-19 2.8E-24 150.1 7.1 47 122-168 1-47 (141)
4 PRK01770 sec-independent trans 99.8 9.3E-20 2E-24 154.8 4.2 48 122-169 1-48 (171)
5 TIGR01410 tatB twin arginine-t 99.8 1.3E-19 2.8E-24 136.7 4.4 72 123-201 1-72 (80)
6 PRK00708 sec-independent trans 99.8 4E-19 8.7E-24 154.9 6.6 48 122-169 1-48 (209)
7 PRK01919 tatB sec-independent 99.8 6.7E-19 1.5E-23 149.5 5.0 48 122-169 1-48 (169)
8 PRK04654 sec-independent trans 99.8 8.1E-19 1.8E-23 153.5 5.4 48 122-169 1-48 (214)
9 PRK03100 sec-independent trans 99.7 2.2E-18 4.9E-23 141.9 7.2 48 122-169 1-49 (136)
10 PRK04098 sec-independent trans 99.7 8.1E-19 1.8E-23 147.7 4.7 48 122-169 1-48 (158)
11 PRK01371 sec-independent trans 99.7 1.6E-17 3.4E-22 137.2 9.9 55 122-179 1-55 (137)
12 PRK00575 tatA twin arginine tr 99.7 2E-17 4.4E-22 128.9 8.2 48 122-169 1-48 (92)
13 COG1826 TatA Sec-independent p 99.7 1.9E-17 4.1E-22 127.2 7.5 48 122-169 1-48 (94)
14 PRK14861 tatA twin arginine tr 99.7 2.8E-17 6E-22 119.3 6.2 49 121-169 1-49 (61)
15 PRK00182 tatB sec-independent 99.7 1.5E-17 3.3E-22 140.3 5.3 48 122-169 1-49 (160)
16 PRK14860 tatA twin arginine tr 99.7 1.3E-17 2.9E-22 122.3 2.9 45 122-166 1-45 (64)
17 PRK14859 tatA twin arginine tr 99.7 2.5E-17 5.4E-22 120.5 3.7 46 122-167 1-46 (63)
18 PRK01614 tatE twin arginine tr 99.7 5.5E-17 1.2E-21 124.9 3.7 47 122-168 1-47 (85)
19 PF02416 MttA_Hcf106: mttA/Hcf 99.6 2.5E-16 5.3E-21 110.9 5.5 45 125-169 1-45 (53)
20 PRK03625 tatE twin arginine tr 99.6 2.1E-16 4.5E-21 116.9 4.8 47 122-168 1-47 (67)
21 TIGR01411 tatAE twin arginine- 99.6 2.6E-16 5.7E-21 108.8 4.6 45 124-168 1-45 (47)
22 PRK01833 tatA twin arginine tr 99.6 3E-16 6.5E-21 118.1 4.9 47 122-168 1-47 (74)
23 PRK04598 tatA twin arginine tr 99.6 3.3E-16 7.1E-21 119.7 3.9 46 122-167 1-46 (81)
24 PRK00442 tatA twin arginine tr 99.6 1.6E-15 3.5E-20 118.3 6.9 46 122-167 1-46 (92)
25 PRK00191 tatA twin arginine tr 99.6 1.2E-15 2.5E-20 117.4 5.0 47 123-169 1-47 (84)
26 PRK02958 tatA twin arginine tr 99.6 6.8E-16 1.5E-20 115.9 3.5 47 122-168 1-47 (73)
27 PRK04561 tatA twin arginine tr 99.6 9E-16 1.9E-20 116.0 3.4 47 122-168 1-47 (75)
28 PRK01470 tatA twin arginine tr 99.6 1.4E-15 3E-20 107.4 4.1 45 123-167 1-45 (51)
29 PRK03554 tatA twin arginine tr 99.6 2.2E-15 4.9E-20 117.0 3.8 45 122-166 1-45 (89)
30 PRK00720 tatA twin arginine tr 99.5 5.1E-15 1.1E-19 112.5 3.3 45 122-166 1-45 (78)
31 PF12732 YtxH: YtxH-like prote 87.4 1.5 3.2E-05 32.0 4.9 49 131-179 9-58 (74)
32 PRK14858 tatA twin arginine tr 87.2 0.9 2E-05 36.8 4.0 40 152-191 24-63 (108)
33 PRK14857 tatA twin arginine tr 82.7 5.2 0.00011 31.5 6.2 38 151-188 25-62 (90)
34 PRK14473 F0F1 ATP synthase sub 70.7 7.6 0.00016 31.9 4.4 12 120-131 1-12 (164)
35 PF06103 DUF948: Bacterial pro 69.5 13 0.00027 27.7 5.0 28 149-176 20-47 (90)
36 PRK00404 tatB sec-independent 64.4 29 0.00064 29.5 6.7 36 143-178 26-63 (141)
37 PRK14472 F0F1 ATP synthase sub 60.2 16 0.00036 30.3 4.5 14 119-132 10-23 (175)
38 PRK13454 F0F1 ATP synthase sub 52.9 23 0.00051 30.0 4.3 35 134-168 41-75 (181)
39 KOG3726 Uncharacterized conser 48.6 18 0.00039 37.7 3.4 33 111-143 92-124 (717)
40 PF13730 HTH_36: Helix-turn-he 48.0 52 0.0011 21.8 4.6 46 124-169 2-51 (55)
41 PRK00247 putative inner membra 47.6 95 0.0021 30.6 8.0 18 139-156 315-332 (429)
42 PRK12703 tRNA 2'-O-methylase; 44.4 17 0.00037 34.5 2.4 43 114-156 73-119 (339)
43 COG1687 AzlD Predicted branche 42.1 27 0.00059 28.6 2.9 19 139-157 25-43 (106)
44 PF01994 Trm56: tRNA ribose 2' 41.3 10 0.00022 31.6 0.3 39 113-153 23-67 (120)
45 PF06103 DUF948: Bacterial pro 41.2 45 0.00098 24.7 3.8 26 144-169 22-47 (90)
46 PRK11677 hypothetical protein; 39.6 42 0.00092 28.0 3.7 15 128-142 3-17 (134)
47 TIGR02209 ftsL_broad cell divi 38.8 1E+02 0.0022 22.3 5.3 25 155-179 31-55 (85)
48 PHA02047 phage lambda Rz1-like 37.4 1.3E+02 0.0028 24.5 6.0 70 130-199 5-83 (101)
49 COG1826 TatA Sec-independent p 35.0 59 0.0013 25.0 3.7 33 152-184 24-56 (94)
50 PRK07352 F0F1 ATP synthase sub 33.9 1.1E+02 0.0023 25.5 5.3 12 119-130 11-22 (174)
51 PF10746 Phage_holin_6: Phage 33.1 48 0.001 25.1 2.8 38 118-161 24-61 (66)
52 PF04977 DivIC: Septum formati 32.1 66 0.0014 22.6 3.3 44 136-180 6-49 (80)
53 PRK01919 tatB sec-independent 32.1 1.9E+02 0.0041 25.4 6.7 10 147-156 30-39 (169)
54 PRK00708 sec-independent trans 31.7 74 0.0016 28.6 4.2 22 145-166 31-52 (209)
55 COG3105 Uncharacterized protei 30.5 83 0.0018 26.9 4.1 16 127-142 7-22 (138)
56 PTZ00269 variant surface glyco 29.5 1.1E+02 0.0023 30.5 5.3 14 210-223 394-407 (472)
57 PRK13455 F0F1 ATP synthase sub 27.9 94 0.002 26.1 4.0 10 121-130 21-30 (184)
58 PRK14861 tatA twin arginine tr 27.0 1.3E+02 0.0028 22.0 4.1 30 151-180 24-53 (61)
59 TIGR01710 typeII_sec_gspG gene 26.8 1.6E+02 0.0034 23.6 5.0 31 124-155 2-32 (134)
60 PRK07353 F0F1 ATP synthase sub 24.6 1.2E+02 0.0025 24.0 3.8 19 149-167 30-48 (140)
61 COG2165 PulG Type II secretory 24.2 1.8E+02 0.0039 21.6 4.7 32 124-156 9-40 (149)
62 PRK13460 F0F1 ATP synthase sub 23.5 2.5E+02 0.0054 23.3 5.8 13 119-131 8-20 (173)
63 PF09680 Tiny_TM_bacill: Prote 22.8 44 0.00096 20.9 0.9 17 127-143 5-21 (24)
64 PRK09174 F0F1 ATP synthase sub 22.7 1E+02 0.0022 26.9 3.5 37 131-167 60-96 (204)
65 PRK04654 sec-independent trans 21.6 3.1E+02 0.0067 25.0 6.3 16 147-162 30-45 (214)
66 PRK00888 ftsB cell division pr 21.6 4.1E+02 0.0088 20.9 8.0 13 139-151 19-31 (105)
67 CHL00019 atpF ATP synthase CF0 21.6 1.5E+02 0.0032 24.9 4.1 12 119-130 16-27 (184)
No 1
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=99.80 E-value=1.4e-19 Score=140.15 Aligned_cols=50 Identities=54% Similarity=0.945 Sum_probs=47.1
Q ss_pred ecccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHHhh
Q 027443 120 ASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (223)
Q Consensus 120 ~~MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~eiqd 169 (223)
+.||||||+||+||+||+||||||+|||+++|++|+++|+||++.+++++
T Consensus 1 m~mF~iG~~ElliIlvVaLlvfGP~KLP~lar~lGk~i~~fkk~~~~~~~ 50 (90)
T PRK14857 1 MNIFGIGLPEMAVILVIALLVFGPKKLPEIGRSLGKTLKGFQEASKEFEN 50 (90)
T ss_pred CCcccccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999987653
No 2
>PRK14858 tatA twin arginine translocase protein A; Provisional
Probab=99.80 E-value=1.9e-19 Score=143.54 Aligned_cols=48 Identities=42% Similarity=0.854 Sum_probs=46.0
Q ss_pred ccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHHhh
Q 027443 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (223)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~eiqd 169 (223)
||||||+||+||+||+||||||+|||+++|++|+++++||++++++++
T Consensus 1 MF~iG~~ElliIlvVallvfGPkKLPelar~lGk~i~~fk~~~~d~k~ 48 (108)
T PRK14858 1 MFGIGMPELIVILVIALIVIGPQKLPDLARSLGRGLAEFKKATDDFKQ 48 (108)
T ss_pred CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999987664
No 3
>PRK00404 tatB sec-independent translocase; Provisional
Probab=99.79 E-value=1.3e-19 Score=150.11 Aligned_cols=47 Identities=34% Similarity=0.661 Sum_probs=44.4
Q ss_pred ccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHHh
Q 027443 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (223)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~eiq 168 (223)
||||||+||+||+||+||||||+|||+++|++|+|+++||+++++.+
T Consensus 1 MF~IG~~ELlvI~VVaLlV~GPkkLP~laR~lG~~i~~~rr~~~~~k 47 (141)
T PRK00404 1 MFGISFSELLLVGLVALLVLGPERLPGAARTAGLWIGRLKRSFNAIK 47 (141)
T ss_pred CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998877543
No 4
>PRK01770 sec-independent translocase; Provisional
Probab=99.78 E-value=9.3e-20 Score=154.78 Aligned_cols=48 Identities=27% Similarity=0.544 Sum_probs=46.1
Q ss_pred ccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHHhh
Q 027443 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (223)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~eiqd 169 (223)
||||||+||+||+||+||||||+|||+++|++|+|+|+||++++++++
T Consensus 1 MF~IG~~ELllI~vVaLlV~GPerLP~~~r~lg~~i~~~R~~~~~~k~ 48 (171)
T PRK01770 1 MFDIGFSELLLVFVIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQN 48 (171)
T ss_pred CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987764
No 5
>TIGR01410 tatB twin arginine-targeting protein translocase TatB. This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins.
Probab=99.78 E-value=1.3e-19 Score=136.70 Aligned_cols=72 Identities=29% Similarity=0.535 Sum_probs=60.1
Q ss_pred cCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHhcCccccchhhcCCCCCCCCC
Q 027443 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTD 201 (223)
Q Consensus 123 FgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~eiqd~s~Efk~elerEi~ldEIrk~tq~~~~~~~tn 201 (223)
|||||+|+++|+||+||||||+|||+++|++|+++++||++++++ +++++++.+.+|+++..++.++.+..|
T Consensus 1 f~ig~~EllvI~vvallv~GP~kLP~~~r~~G~~i~~~r~~~~~~-------~~~~~~e~~~~el~~~~~~~~~~~~~~ 72 (80)
T TIGR01410 1 FDIGFSELLLIAVVALVVLGPERLPVAIRAVGKFVRRLRGMASDV-------KNELDEELKAQELDEQLKKAQQLRFLN 72 (80)
T ss_pred CCCcHHHHHHHHHHHHheECchHHHHHHHHHHHHHHHHHHhhHhH-------HHHHHHHhchHhHHHHHHHHHHHhccC
Confidence 899999999999999999999999999999999999999888754 455666777778887776555544444
No 6
>PRK00708 sec-independent translocase; Provisional
Probab=99.77 E-value=4e-19 Score=154.90 Aligned_cols=48 Identities=33% Similarity=0.596 Sum_probs=46.4
Q ss_pred ccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHHhh
Q 027443 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (223)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~eiqd 169 (223)
||||||+||+||+||+||||||+|||+++|++|+++++||++.+++++
T Consensus 1 MFdIG~~ELlvI~vVaLvV~GPkrLP~~~R~lGk~v~k~R~~a~e~r~ 48 (209)
T PRK00708 1 MFDIGWSELLVIAIVLIVVVGPKDLPPMLRAFGKMTARMRKMAGEFRR 48 (209)
T ss_pred CCCccHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998775
No 7
>PRK01919 tatB sec-independent translocase; Provisional
Probab=99.75 E-value=6.7e-19 Score=149.54 Aligned_cols=48 Identities=35% Similarity=0.583 Sum_probs=45.8
Q ss_pred ccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHHhh
Q 027443 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (223)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~eiqd 169 (223)
||||||+||+||+|||||||||+|||+++|++|++++++|++++++++
T Consensus 1 MFdIG~~ElliI~VVALiV~GPekLP~~aRtlGk~i~k~Rr~~~d~K~ 48 (169)
T PRK01919 1 MIDLGLSKLALIGVVALVVIGPERLPRVARTAGALFGRAQRYINDVKA 48 (169)
T ss_pred CCCCcHHHHHHHHHHHHheeCchHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987654
No 8
>PRK04654 sec-independent translocase; Provisional
Probab=99.75 E-value=8.1e-19 Score=153.49 Aligned_cols=48 Identities=33% Similarity=0.520 Sum_probs=45.1
Q ss_pred ccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHHhh
Q 027443 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (223)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~eiqd 169 (223)
||||||+||+||+||+||||||+|||+++|++|+|+|+||++++++++
T Consensus 1 MFgIG~~ELLlI~VVALlV~GPerLPe~aRtlGk~irk~R~~~~~vk~ 48 (214)
T PRK04654 1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQ 48 (214)
T ss_pred CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988876543
No 9
>PRK03100 sec-independent translocase; Provisional
Probab=99.75 E-value=2.2e-18 Score=141.90 Aligned_cols=48 Identities=27% Similarity=0.437 Sum_probs=45.5
Q ss_pred cc-CCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHHhh
Q 027443 122 LF-GVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (223)
Q Consensus 122 MF-gIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~eiqd 169 (223)
|| ||||+||+||+||+||||||||||+++|++|+++|+||++++++++
T Consensus 1 Mf~~iG~~EllvI~vVaLvv~GPkrLP~~~r~lG~~vr~~R~~~~~~~~ 49 (136)
T PRK03100 1 MFANIGWGEMLVLVVAGLVILGPERLPGAIRWTARALRQARDYASGATS 49 (136)
T ss_pred CcccccHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78 6999999999999999999999999999999999999999987764
No 10
>PRK04098 sec-independent translocase; Provisional
Probab=99.75 E-value=8.1e-19 Score=147.65 Aligned_cols=48 Identities=35% Similarity=0.605 Sum_probs=45.7
Q ss_pred ccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHHhh
Q 027443 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (223)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~eiqd 169 (223)
||||||+||+||+|||||||||+|||+++|++|+++|+||++++++++
T Consensus 1 MfgiG~~EllvI~vVaLlvfGP~KLP~~~r~lGk~ir~~K~~~~~~k~ 48 (158)
T PRK04098 1 MFGMGFFEILVILVVAIIFLGPDKLPQAMVDIAKFFKAVKKTINDAKS 48 (158)
T ss_pred CCCCcHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999987653
No 11
>PRK01371 sec-independent translocase; Provisional
Probab=99.73 E-value=1.6e-17 Score=137.18 Aligned_cols=55 Identities=38% Similarity=0.735 Sum_probs=49.1
Q ss_pred ccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Q 027443 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLE 179 (223)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~eiqd~s~Efk~ele 179 (223)
||||||+||+||+||+||||||+|||+++|++|+++|+||++++++++ ++++++.
T Consensus 1 MfgIG~~EllvIlvVallvfGPeKLP~~ar~lg~~ir~~R~~~~~ak~---~i~~Elg 55 (137)
T PRK01371 1 MFGIGPGELVVLVVLAVLVFGPDKLPKAARDAGRTLRQLREMANNARN---DLRSELG 55 (137)
T ss_pred CCCccHHHHHHHHHHHhheeCchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhc
Confidence 899999999999999999999999999999999999999999987664 4444443
No 12
>PRK00575 tatA twin arginine translocase protein A; Provisional
Probab=99.72 E-value=2e-17 Score=128.92 Aligned_cols=48 Identities=35% Similarity=0.636 Sum_probs=45.1
Q ss_pred ccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHHhh
Q 027443 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (223)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~eiqd 169 (223)
|||||++||+||++|+||||||+|||+++|++||++|+||++.+++++
T Consensus 1 m~~iG~~ElliIlvi~LllFGpkKLPel~r~lGk~ir~fK~a~~~~~~ 48 (92)
T PRK00575 1 MGSLSPWHWAILAVVVILLFGAKKLPDAARSLGKSLRIFKSEVKEMQS 48 (92)
T ss_pred CCcccHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 899999999999999999999999999999999999999988876553
No 13
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=99.71 E-value=1.9e-17 Score=127.17 Aligned_cols=48 Identities=50% Similarity=0.895 Sum_probs=45.6
Q ss_pred ccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHHhh
Q 027443 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (223)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~eiqd 169 (223)
||+|||+||+||+||+||||||+|||+++|++|+++|+||+++++.++
T Consensus 1 M~~ig~~elliIlvV~lllfGpkKLP~l~r~~G~~i~~fKk~~~~~~~ 48 (94)
T COG1826 1 MFGIGWSELLIILVVALLVFGPKKLPEAGRDLGKAIREFKKAASDVKN 48 (94)
T ss_pred CCCCCHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHhhhHH
Confidence 889999999999999999999999999999999999999999987654
No 14
>PRK14861 tatA twin arginine translocase protein A; Provisional
Probab=99.70 E-value=2.8e-17 Score=119.31 Aligned_cols=49 Identities=47% Similarity=0.805 Sum_probs=45.6
Q ss_pred cccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHHhh
Q 027443 121 SLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (223)
Q Consensus 121 ~MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~eiqd 169 (223)
+|+||||+|+++|++|+|+||||+|||+++|++|+++|+||++++++++
T Consensus 1 M~~~ig~~ElliI~vi~llvfGp~kLP~l~r~~G~~~~~fk~~~~~~~~ 49 (61)
T PRK14861 1 MFSNIGFPGLILILVVALIIFGPKKLPELGKALGKTLREFKKATKELTD 49 (61)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999999999999999998887654
No 15
>PRK00182 tatB sec-independent translocase; Provisional
Probab=99.70 E-value=1.5e-17 Score=140.25 Aligned_cols=48 Identities=29% Similarity=0.517 Sum_probs=45.1
Q ss_pred cc-CCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHHhh
Q 027443 122 LF-GVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (223)
Q Consensus 122 MF-gIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~eiqd 169 (223)
|| ||||+||+||+||+||||||+|||+++|++|+++|+||+++++.++
T Consensus 1 MF~~IG~~EllvIlvIaLlVfGPerLP~~~r~lg~~ir~~R~~~~~~k~ 49 (160)
T PRK00182 1 MFSSVGWGEILLLLIVGLIVIGPERLPRLIEDVRAALLAARTAINNAKQ 49 (160)
T ss_pred CcccccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78 5999999999999999999999999999999999999999987654
No 16
>PRK14860 tatA twin arginine translocase protein A; Provisional
Probab=99.68 E-value=1.3e-17 Score=122.26 Aligned_cols=45 Identities=44% Similarity=0.840 Sum_probs=43.5
Q ss_pred ccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHH
Q 027443 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE 166 (223)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~e 166 (223)
||||||+||+||++|+||||||+|||+++|++|+++|+||+++++
T Consensus 1 MfgiG~~ElliI~vIalllfGp~kLP~l~r~lGk~ir~fkk~~~~ 45 (64)
T PRK14860 1 MFGFGMPELIVILVIALVVFGPAKLPQLGQALGGAIRNFKKASNE 45 (64)
T ss_pred CCCccHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHccc
Confidence 899999999999999999999999999999999999999988875
No 17
>PRK14859 tatA twin arginine translocase protein A; Provisional
Probab=99.68 E-value=2.5e-17 Score=120.46 Aligned_cols=46 Identities=41% Similarity=0.799 Sum_probs=44.1
Q ss_pred ccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHH
Q 027443 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL 167 (223)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~ei 167 (223)
|||||++||+||++|+|+||||+|||+++|++|+++++||+++++.
T Consensus 1 MfgiG~~ElliIlvv~LlvfGp~kLP~l~r~lGk~i~~frk~~~~~ 46 (63)
T PRK14859 1 MFGIGMPELIVILVIVLIVFGAGKLPEIGGGLGKSIKNFKKATSEK 46 (63)
T ss_pred CCCccHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 8999999999999999999999999999999999999999888754
No 18
>PRK01614 tatE twin arginine translocase protein A; Validated
Probab=99.66 E-value=5.5e-17 Score=124.93 Aligned_cols=47 Identities=28% Similarity=0.619 Sum_probs=44.2
Q ss_pred ccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHHh
Q 027443 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (223)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~eiq 168 (223)
|||+|+|||+||++|+||+|||+|||+++|++|+++|+||+.+++.+
T Consensus 1 M~GlG~~ELLIIlvIvLLLFG~kKLPeLgr~LGkaIkeFKka~~e~~ 47 (85)
T PRK01614 1 MEGLSITKLLVVGILIVLLFGTSKLRTLGADLGAALKGFKKAMRNDD 47 (85)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhcccc
Confidence 89999999999999999999999999999999999999998777543
No 19
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=99.64 E-value=2.5e-16 Score=110.87 Aligned_cols=45 Identities=56% Similarity=0.928 Sum_probs=40.7
Q ss_pred CChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHHhh
Q 027443 125 VGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (223)
Q Consensus 125 IG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~eiqd 169 (223)
||++||++|++|+|+||||+|||+++|++|+++|+||++.++.++
T Consensus 1 ig~~El~iI~vvalllfGp~kLP~~~r~lG~~ir~fk~~~~~~~~ 45 (53)
T PF02416_consen 1 IGFPELLIILVVALLLFGPKKLPELARSLGKAIREFKKAINEAKE 45 (53)
T ss_dssp S-HHHHHHHHHHHHHHS-TTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 699999999999999999999999999999999999999987664
No 20
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=99.64 E-value=2.1e-16 Score=116.91 Aligned_cols=47 Identities=21% Similarity=0.501 Sum_probs=44.1
Q ss_pred ccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHHh
Q 027443 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (223)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~eiq 168 (223)
|||||++||+||++|+||||||+|||+++|++|+++|+||+.+++..
T Consensus 1 M~~ig~~elliIlvI~lllFGpkKLp~lg~~lGk~i~~Fk~~~~~~~ 47 (67)
T PRK03625 1 MGEISITKLLVVAALVVLLFGTKKLRTLGGDLGAAIKGFKKAMNDDD 47 (67)
T ss_pred CCCCcHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999999999999999999999999999999998777543
No 21
>TIGR01411 tatAE twin arginine-targeting protein translocase, TatA/E family. This model distinguishes TatA/E from the related TatB, but does not distinguish TatA from TatE. The Tat (twin-arginine translocation) system is a Sec-independent exporter for folded proteins, often with a redox cofactor already bound, across the bacterial inner membrane. Functionally equivalent systems are found in the chloroplast and some in archaeal species. The signal peptide recognized by the Tat system is modeled by TIGR01409.
Probab=99.63 E-value=2.6e-16 Score=108.81 Aligned_cols=45 Identities=44% Similarity=0.805 Sum_probs=42.5
Q ss_pred CCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHHh
Q 027443 124 GVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (223)
Q Consensus 124 gIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~eiq 168 (223)
|||++|+++|++|++++|||+|||+++|++|+++|+||+++++.+
T Consensus 1 gig~~ElliI~vi~llvfGp~kLP~~~r~lG~~i~~fk~~~~~~~ 45 (47)
T TIGR01411 1 GLSPPEWLIILVVILLLFGAKKLPELGRDLGKAIKEFKKALKEEE 45 (47)
T ss_pred CCCHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHHHhhccc
Confidence 689999999999999999999999999999999999999887654
No 22
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=99.63 E-value=3e-16 Score=118.10 Aligned_cols=47 Identities=23% Similarity=0.515 Sum_probs=44.3
Q ss_pred ccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHHh
Q 027443 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (223)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~eiq 168 (223)
|||+|+|||+||++|+||+|||+|||+++|++|+++|+||+.+++.+
T Consensus 1 m~g~g~~elliIl~i~lllFG~kKLP~l~~~lGk~ik~Fkk~~~~~~ 47 (74)
T PRK01833 1 MGGISIWQLLIIVAIIVLLFGTKKLRTLGTDLGESVKGFKKAMADDK 47 (74)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999999999999999999999999999999998877543
No 23
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=99.61 E-value=3.3e-16 Score=119.67 Aligned_cols=46 Identities=28% Similarity=0.581 Sum_probs=43.7
Q ss_pred ccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHH
Q 027443 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL 167 (223)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~ei 167 (223)
|||+|+|||+||++|+||+|||+|||+++|++|+++|+||+++++.
T Consensus 1 m~glg~~elliIlvivlllFG~kKLPelg~~lGk~i~~FKk~~~~~ 46 (81)
T PRK04598 1 MGGISIWQLLIIAVIVVLLFGTKKLRGIGSDLGSAVKGFKKAMSEE 46 (81)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhccc
Confidence 8999999999999999999999999999999999999999887753
No 24
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=99.60 E-value=1.6e-15 Score=118.27 Aligned_cols=46 Identities=28% Similarity=0.439 Sum_probs=43.4
Q ss_pred ccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHH
Q 027443 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL 167 (223)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~ei 167 (223)
|+++|++||+||++|+||+|||+|||+++|++|+++|+||+.++|.
T Consensus 1 Mg~~g~~elliIlvIvlllFG~~KLPelg~~lGk~ik~FKka~~e~ 46 (92)
T PRK00442 1 MGIFDWKHWIVILVVVVLVFGTKKLKNLGSDVGESIKGFRKAMNED 46 (92)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhccc
Confidence 8899999999999999999999999999999999999999877643
No 25
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=99.59 E-value=1.2e-15 Score=117.42 Aligned_cols=47 Identities=28% Similarity=0.640 Sum_probs=43.7
Q ss_pred cCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHHhh
Q 027443 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (223)
Q Consensus 123 FgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~eiqd 169 (223)
.|||++||+||++|+||||||+|||+++|++|+++|+||++++++++
T Consensus 1 m~ig~~ElliI~vI~lllFGp~KLP~~~r~lGk~ir~FK~~~~~~~~ 47 (84)
T PRK00191 1 MSLGPWEIGIIVLLIIVLFGAKKLPDAARSIGRSMRIFKSEVKEMSK 47 (84)
T ss_pred CCCcHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 47999999999999999999999999999999999999988886653
No 26
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=99.59 E-value=6.8e-16 Score=115.92 Aligned_cols=47 Identities=26% Similarity=0.460 Sum_probs=44.0
Q ss_pred ccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHHh
Q 027443 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (223)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~eiq 168 (223)
|+++|+|||+||++|+||||||+|||+++|++|+++|+||+.+++.+
T Consensus 1 mg~~g~~elliIl~IvlllFG~kKLPelgr~lGkair~FK~~~~~~~ 47 (73)
T PRK02958 1 MGSFSIWHWLIVLVIVVLVFGTKKLRNIGSDLGGAVKGFKDGMKEGE 47 (73)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhcccc
Confidence 78999999999999999999999999999999999999998777543
No 27
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=99.58 E-value=9e-16 Score=116.00 Aligned_cols=47 Identities=30% Similarity=0.452 Sum_probs=44.1
Q ss_pred ccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHHh
Q 027443 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (223)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~eiq 168 (223)
|+++|+|||+||++|+||+|||+|||+++|++|+++++||+.+++.+
T Consensus 1 Mgg~s~~ellIIlvIvlLlFG~~KLPel~r~lGk~ik~FKk~~~e~~ 47 (75)
T PRK04561 1 MGSFSIWHWLVVLVIVLLVFGTKRLTSGAKDLGSAVKEFKKGMHDDD 47 (75)
T ss_pred CCCCcHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999999999999999999999999999999998777543
No 28
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=99.58 E-value=1.4e-15 Score=107.38 Aligned_cols=45 Identities=24% Similarity=0.532 Sum_probs=41.8
Q ss_pred cCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHH
Q 027443 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL 167 (223)
Q Consensus 123 FgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~ei 167 (223)
.|||++||++|++|+|+||||+|||+++|++|+++|+||++++|.
T Consensus 1 mgig~~elliI~vi~llvFGp~KLP~l~r~lG~~i~~Fk~~~~~~ 45 (51)
T PRK01470 1 MGMSFSHLLIVLLIIFVLFGAGKLPQVMSDLAKGLKAFKDGMKDD 45 (51)
T ss_pred CCCCHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHHHhccc
Confidence 379999999999999999999999999999999999999877653
No 29
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=99.56 E-value=2.2e-15 Score=116.97 Aligned_cols=45 Identities=27% Similarity=0.634 Sum_probs=42.9
Q ss_pred ccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHH
Q 027443 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE 166 (223)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~e 166 (223)
|||+|+|||+||+||+||+|||+|||+++|.+|+++|+||+++++
T Consensus 1 M~glG~~eLlIIlvIvLLlFG~kKLPelgr~LGkaireFKka~~e 45 (89)
T PRK03554 1 MGGISIWQLLIIAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMSD 45 (89)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhcc
Confidence 899999999999999999999999999999999999999987764
No 30
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=99.52 E-value=5.1e-15 Score=112.48 Aligned_cols=45 Identities=20% Similarity=0.382 Sum_probs=42.9
Q ss_pred ccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHH
Q 027443 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE 166 (223)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~e 166 (223)
|+++|+|||+||++|+||+|||+|||+++|++|+++++||+.++|
T Consensus 1 Mgg~g~~ellIIlvIvlllFG~kKLP~l~~~lGk~ik~FKk~~~~ 45 (78)
T PRK00720 1 MGSFSIWHWLIVLAVVLLLFGRGKISELMGDVAKGIKSFKKGMAD 45 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhcc
Confidence 899999999999999999999999999999999999999977764
No 31
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=87.41 E-value=1.5 Score=32.00 Aligned_cols=49 Identities=24% Similarity=0.363 Sum_probs=38.3
Q ss_pred HHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHHhhhHHH-HHHHHH
Q 027443 131 LVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSRE-FKSTLE 179 (223)
Q Consensus 131 LVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~eiqd~s~E-fk~ele 179 (223)
.++++++-+++-|+.=.++-+.+.+....++....++.+...+ +++.++
T Consensus 9 a~~Ga~~glL~aP~sG~e~R~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~ 58 (74)
T PF12732_consen 9 AAAGAAAGLLFAPKSGKETREKLKDKAEDLKDKAKDLYEEAKEKVKEKAE 58 (74)
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788889999999999999999999999888877766544333 444443
No 32
>PRK14858 tatA twin arginine translocase protein A; Provisional
Probab=87.19 E-value=0.9 Score=36.84 Aligned_cols=40 Identities=15% Similarity=0.306 Sum_probs=22.2
Q ss_pred HHHHHHHHHhHHHHHHhhhHHHHHHHHHHhcCccccchhh
Q 027443 152 NLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTST 191 (223)
Q Consensus 152 ~lGK~iR~fK~~~~eiqd~s~Efk~elerEi~ldEIrk~t 191 (223)
.|=...|.+-++++++++..++++++++++.+.+++++..
T Consensus 24 KLPelar~lGk~i~~fk~~~~d~k~~i~~E~~~~e~~~~~ 63 (108)
T PRK14858 24 KLPDLARSLGRGLAEFKKATDDFKQSMQEESRTAEEKEKA 63 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3334444455555666666667777766655555444433
No 33
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=82.69 E-value=5.2 Score=31.47 Aligned_cols=38 Identities=24% Similarity=0.469 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhHHHHHHhhhHHHHHHHHHHhcCccccc
Q 027443 151 RNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDIS 188 (223)
Q Consensus 151 R~lGK~iR~fK~~~~eiqd~s~Efk~elerEi~ldEIr 188 (223)
+.|-...|.+-++++++++..++++++++++.+-.+..
T Consensus 25 ~KLP~lar~lGk~i~~fkk~~~~~~~e~~~~~~~~~~~ 62 (90)
T PRK14857 25 KKLPEIGRSLGKTLKGFQEASKEFENEIKREMAEPEQE 62 (90)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55556666666777777777778888777654433333
No 34
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=70.68 E-value=7.6 Score=31.85 Aligned_cols=12 Identities=8% Similarity=0.155 Sum_probs=9.0
Q ss_pred ecccCCChHHHH
Q 027443 120 ASLFGVGAPEAL 131 (223)
Q Consensus 120 ~~MFgIG~~ELL 131 (223)
+.|||+.|+-++
T Consensus 1 ~~~~~~~~~~~~ 12 (164)
T PRK14473 1 MEKLGINLGLLI 12 (164)
T ss_pred CCcccCcHHHHH
Confidence 469999987655
No 35
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=69.47 E-value=13 Score=27.73 Aligned_cols=28 Identities=32% Similarity=0.377 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhHHHHHH
Q 027443 149 VARNLGKTLRAFQPTIRELQDVSREFKS 176 (223)
Q Consensus 149 laR~lGK~iR~fK~~~~eiqd~s~Efk~ 176 (223)
..+.+++.++++++.++.+++..+++.+
T Consensus 20 ~l~~l~~~l~~~~~ti~~l~~~~~~i~~ 47 (90)
T PF06103_consen 20 VLKKLKKTLDEVNKTIDTLQEQVDPITK 47 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4455555566655555555444433333
No 36
>PRK00404 tatB sec-independent translocase; Provisional
Probab=64.36 E-value=29 Score=29.45 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=19.7
Q ss_pred CccHHHHHHHHHHHHHHHhHHHHHHhhh--HHHHHHHH
Q 027443 143 PKGLAEVARNLGKTLRAFQPTIRELQDV--SREFKSTL 178 (223)
Q Consensus 143 PkKLPelaR~lGK~iR~fK~~~~eiqd~--s~Efk~el 178 (223)
|+=.-.+++.+|++-+.|+...+++++. .+|+++++
T Consensus 26 P~laR~lG~~i~~~rr~~~~~k~ei~~E~~~~elr~~l 63 (141)
T PRK00404 26 PGAARTAGLWIGRLKRSFNAIKQEVEREIGADEIRRQL 63 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 3334556666666666666666665442 23444443
No 37
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=60.23 E-value=16 Score=30.34 Aligned_cols=14 Identities=7% Similarity=-0.033 Sum_probs=9.6
Q ss_pred eecccCCChHHHHH
Q 027443 119 YASLFGVGAPEALV 132 (223)
Q Consensus 119 ~~~MFgIG~~ELLV 132 (223)
-.+||++.++.+++
T Consensus 10 ~~~~~~~~~~~~~~ 23 (175)
T PRK14472 10 SGGLLSPNPGLIFW 23 (175)
T ss_pred cCCccCCCHHHHHH
Confidence 45689998766543
No 38
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=52.85 E-value=23 Score=29.96 Aligned_cols=35 Identities=11% Similarity=0.138 Sum_probs=18.6
Q ss_pred HhhhhheECCccHHHHHHHHHHHHHHHhHHHHHHh
Q 027443 134 GVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (223)
Q Consensus 134 lVVALLVfGPkKLPelaR~lGK~iR~fK~~~~eiq 168 (223)
++|.+++++-=-+|.+.+.+-+--..+++..++.+
T Consensus 41 F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l~~Ae 75 (181)
T PRK13454 41 LVAIYFVLTRVALPRIGAVLAERQGTITNDLAAAE 75 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33444444433367777777666555555554443
No 39
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.63 E-value=18 Score=37.73 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=30.2
Q ss_pred hccccceeeecccCCChHHHHHHHhhhhheECC
Q 027443 111 RRCKRGVFYASLFGVGAPEALVIGVVALLVFGP 143 (223)
Q Consensus 111 ~~~~~~~~~~~MFgIG~~ELLVIlVVALLVfGP 143 (223)
=||...-++-.+||-+..-++.+++.+++.+||
T Consensus 92 vr~~~llllp~~~gk~grt~l~v~a~a~l~~GP 124 (717)
T KOG3726|consen 92 VRAAKLLLLPEAFGKSGRTILLVFAFATLIFGP 124 (717)
T ss_pred HHHHHHHHhHHHHccCCchhhHHHHHHHHHhCc
Confidence 478888889999999999999999999999999
No 40
>PF13730 HTH_36: Helix-turn-helix domain
Probab=47.99 E-value=52 Score=21.79 Aligned_cols=46 Identities=24% Similarity=0.308 Sum_probs=35.0
Q ss_pred CCChHHHHHHHhhhhheECCc----cHHHHHHHHHHHHHHHhHHHHHHhh
Q 027443 124 GVGAPEALVIGVVALLVFGPK----GLAEVARNLGKTLRAFQPTIRELQD 169 (223)
Q Consensus 124 gIG~~ELLVIlVVALLVfGPk----KLPelaR~lGK~iR~fK~~~~eiqd 169 (223)
+++..|.+|.+.++-..-+.. -...++..+|-..+.+++.++++++
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~~g~s~~Tv~~~i~~L~~ 51 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAKDLGVSRRTVQRAIKELEE 51 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 577888888888777763333 3678999999998889888887653
No 41
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=47.56 E-value=95 Score=30.56 Aligned_cols=18 Identities=11% Similarity=0.206 Sum_probs=11.0
Q ss_pred heECCccHHHHHHHHHHH
Q 027443 139 LVFGPKGLAEVARNLGKT 156 (223)
Q Consensus 139 LVfGPkKLPelaR~lGK~ 156 (223)
.++-|-+.|++-++....
T Consensus 315 ~~~~p~~~~~~~~~~~~~ 332 (429)
T PRK00247 315 MIITPWRAPELHAENAEI 332 (429)
T ss_pred ccCCcccHHHHHHHHHHH
Confidence 345677888886554433
No 42
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=44.44 E-value=17 Score=34.50 Aligned_cols=43 Identities=7% Similarity=0.050 Sum_probs=34.1
Q ss_pred ccceeeecccCCChHHHHHHHh----hhhheECCccHHHHHHHHHHH
Q 027443 114 KRGVFYASLFGVGAPEALVIGV----VALLVFGPKGLAEVARNLGKT 156 (223)
Q Consensus 114 ~~~~~~~~MFgIG~~ELLVIlV----VALLVfGPkKLPelaR~lGK~ 156 (223)
.+.++|+.|+|+.+.+.+--+- =.|+|+|.+|.|.=.-.++-+
T Consensus 73 ~g~vvhltmyg~~~~~~~~~i~~~~~~~~~vvg~~kvp~~~y~~ad~ 119 (339)
T PRK12703 73 HGIRVHLTMYGRPIEDVIDEIRESGKDVMVLVGSEKVPIEAYEIADY 119 (339)
T ss_pred CCEEEEEecCCCchHHHHHHHhccCCCEEEEECCCcCCHHHHhhccc
Confidence 6899999999999998765544 368999999999766655443
No 43
>COG1687 AzlD Predicted branched-chain amino acid permeases (azaleucine resistance) [Amino acid transport and metabolism]
Probab=42.15 E-value=27 Score=28.57 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=17.7
Q ss_pred heECCccHHHHHHHHHHHH
Q 027443 139 LVFGPKGLAEVARNLGKTL 157 (223)
Q Consensus 139 LVfGPkKLPelaR~lGK~i 157 (223)
++|++.|.|++.+.+||++
T Consensus 25 ~if~~~~ppq~v~~lgk~l 43 (106)
T COG1687 25 LIFKSGRPPQFVGYLGKVL 43 (106)
T ss_pred HhcCCCCchHHHHHHHHhc
Confidence 6899999999999999985
No 44
>PF01994 Trm56: tRNA ribose 2'-O-methyltransferase, aTrm56; InterPro: IPR002845 This entry represents tRNA ribose 2'-O-methyltransferase aTrm56, which specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs. The crystal structure of Pyrococcus horikoshii aTrm56 complexed with S-adenosyl-L-methionine has been determined to 2.48 A resolution. aTrm56 consists of the SPOUT domain, which contains the characteristic deep trefoil knot, and a unique C-terminal beta-hairpin []. A conserved cytidine at position 56 of tRNA contributes to the maintenance of the L-shaped tertiary structure. aTrm56 catalyzes the 2'-O-methylation of the cytidine residue in archaeal tRNA, using S-adenosyl-L-methionine. Biochemical assays showed that aTrm56 forms a dimer and prefers the L-shaped tRNA to the lambda form as its substrate [, ].; GO: 0008175 tRNA methyltransferase activity, 0002128 tRNA nucleoside ribose methylation, 0005737 cytoplasm; PDB: 2YY8_A 2O3A_B.
Probab=41.34 E-value=10 Score=31.61 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=24.9
Q ss_pred cccceeeecccCCChHHHHHHHhh------hhheECCccHHHHHHHH
Q 027443 113 CKRGVFYASLFGVGAPEALVIGVV------ALLVFGPKGLAEVARNL 153 (223)
Q Consensus 113 ~~~~~~~~~MFgIG~~ELLVIlVV------ALLVfGPkKLPelaR~l 153 (223)
-.+.++|+.|.|+...+. |--| .|||+|.+|.|.=.-.+
T Consensus 23 ~~G~VVHLTMYG~~i~dv--i~~Ir~~~~~~lvVVGaeKVP~evYe~ 67 (120)
T PF01994_consen 23 KGGKVVHLTMYGENIDDV--IDEIRESCKDLLVVVGAEKVPGEVYEL 67 (120)
T ss_dssp -SSEEEEE-TTSEEHHHC--HHHHHHCTSEEEEEE-SS---CCHHHH
T ss_pred cCCeEEEEEecCCchHHH--HHHHhccCCCEEEEECCCcCCHHHHhh
Confidence 468899999999999984 3444 48999999999654433
No 45
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=41.25 E-value=45 Score=24.74 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=15.5
Q ss_pred ccHHHHHHHHHHHHHHHhHHHHHHhh
Q 027443 144 KGLAEVARNLGKTLRAFQPTIRELQD 169 (223)
Q Consensus 144 kKLPelaR~lGK~iR~fK~~~~eiqd 169 (223)
.++-+..+.+-+.++.+++..+++.+
T Consensus 22 ~~l~~~l~~~~~ti~~l~~~~~~i~~ 47 (90)
T PF06103_consen 22 KKLKKTLDEVNKTIDTLQEQVDPITK 47 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 46666666666666666665554443
No 46
>PRK11677 hypothetical protein; Provisional
Probab=39.59 E-value=42 Score=28.03 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=9.7
Q ss_pred HHHHHHHhhhhheEC
Q 027443 128 PEALVIGVVALLVFG 142 (223)
Q Consensus 128 ~ELLVIlVVALLVfG 142 (223)
|.+.+|++|+-+++|
T Consensus 3 W~~a~i~livG~iiG 17 (134)
T PRK11677 3 WEYALIGLVVGIIIG 17 (134)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666666666
No 47
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=38.80 E-value=1e+02 Score=22.26 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=10.6
Q ss_pred HHHHHHhHHHHHHhhhHHHHHHHHH
Q 027443 155 KTLRAFQPTIRELQDVSREFKSTLE 179 (223)
Q Consensus 155 K~iR~fK~~~~eiqd~s~Efk~ele 179 (223)
+-+...++...++++.-++++.++.
T Consensus 31 ~~~~~~~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 31 NELQKLQLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444544444
No 48
>PHA02047 phage lambda Rz1-like protein
Probab=37.45 E-value=1.3e+02 Score=24.52 Aligned_cols=70 Identities=11% Similarity=0.136 Sum_probs=36.2
Q ss_pred HHHHHhhhhheECCccHHHH-HHHHHHHHHHHhHHHHHHhhhHH---HHHHH---HH--HhcCccccchhhcCCCCCCC
Q 027443 130 ALVIGVVALLVFGPKGLAEV-ARNLGKTLRAFQPTIRELQDVSR---EFKST---LE--REIGLDDISTSTQNPNNLNR 199 (223)
Q Consensus 130 LLVIlVVALLVfGPkKLPel-aR~lGK~iR~fK~~~~eiqd~s~---Efk~e---le--rEi~ldEIrk~tq~~~~~~~ 199 (223)
+++|++++++..|..-.-.. -|.+|..=++.++..+.++.... ..++. ++ .+...+|++..+++..++.-
T Consensus 5 ~~~~~~~v~~~~g~~y~~~~~~r~~g~~h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~~WaD 83 (101)
T PHA02047 5 IVAILVLVVVALGASYGFVQSYRALGIAHEEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQNRPWAD 83 (101)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 45566666666664433333 45666666666665555443211 11111 21 23455778888877666643
No 49
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=35.01 E-value=59 Score=25.04 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=18.5
Q ss_pred HHHHHHHHHhHHHHHHhhhHHHHHHHHHHhcCc
Q 027443 152 NLGKTLRAFQPTIRELQDVSREFKSTLEREIGL 184 (223)
Q Consensus 152 ~lGK~iR~fK~~~~eiqd~s~Efk~elerEi~l 184 (223)
.|....|.+-++++++++..++++++++.+...
T Consensus 24 KLP~l~r~~G~~i~~fKk~~~~~~~e~~~~~~~ 56 (94)
T COG1826 24 KLPEAGRDLGKAIREFKKAASDVKNELDEELKL 56 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Confidence 334444444455666666666777666655433
No 50
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=33.87 E-value=1.1e+02 Score=25.50 Aligned_cols=12 Identities=17% Similarity=0.099 Sum_probs=7.7
Q ss_pred eecccCCChHHH
Q 027443 119 YASLFGVGAPEA 130 (223)
Q Consensus 119 ~~~MFgIG~~EL 130 (223)
+.++||+.++-+
T Consensus 11 ~~~~~~~~~~~~ 22 (174)
T PRK07352 11 AEGGFGLNLNLL 22 (174)
T ss_pred ccCCCCCchhHH
Confidence 457787776543
No 51
>PF10746 Phage_holin_6: Phage holin family 6; InterPro: IPR019682 This entry represents a protein conserved in Caudovirales (known as tailed bacteriophages). Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis.
Probab=33.14 E-value=48 Score=25.12 Aligned_cols=38 Identities=18% Similarity=0.314 Sum_probs=26.5
Q ss_pred eeecccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHh
Q 027443 118 FYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQ 161 (223)
Q Consensus 118 ~~~~MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK 161 (223)
.-..|+|+++.|++.|+-++..|+ +++-.+=+++++.|
T Consensus 24 ~a~~f~GLslneWfyiati~Ytvl------Qig~~v~k~v~~~k 61 (66)
T PF10746_consen 24 VARYFWGLSLNEWFYIATIAYTVL------QIGYLVWKKVRDWK 61 (66)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 344568999999999999998765 34444445555444
No 52
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=32.14 E-value=66 Score=22.58 Aligned_cols=44 Identities=34% Similarity=0.564 Sum_probs=19.8
Q ss_pred hhhheECCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Q 027443 136 VALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLER 180 (223)
Q Consensus 136 VALLVfGPkKLPelaR~lGK~iR~fK~~~~eiqd~s~Efk~eler 180 (223)
+.++++|-..+-.+ ..+-+-+..+++...++++..++.+++++.
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 6 VIFLVFGISGYSRY-YQLNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred hhHHHHhcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443444333 233444555555555555444445555443
No 53
>PRK01919 tatB sec-independent translocase; Provisional
Probab=32.13 E-value=1.9e+02 Score=25.40 Aligned_cols=10 Identities=10% Similarity=0.275 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 027443 147 AEVARNLGKT 156 (223)
Q Consensus 147 PelaR~lGK~ 156 (223)
-.+++.+|+.
T Consensus 30 RtlGk~i~k~ 39 (169)
T PRK01919 30 RTAGALFGRA 39 (169)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 54
>PRK00708 sec-independent translocase; Provisional
Probab=31.73 E-value=74 Score=28.60 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=11.3
Q ss_pred cHHHHHHHHHHHHHHHhHHHHH
Q 027443 145 GLAEVARNLGKTLRAFQPTIRE 166 (223)
Q Consensus 145 KLPelaR~lGK~iR~fK~~~~e 166 (223)
.+-...+.+-+..++||+.+++
T Consensus 31 ~lGk~v~k~R~~a~e~r~~~~e 52 (209)
T PRK00708 31 AFGKMTARMRKMAGEFRRQFDE 52 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445666665553
No 55
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.53 E-value=83 Score=26.86 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=13.6
Q ss_pred hHHHHHHHhhhhheEC
Q 027443 127 APEALVIGVVALLVFG 142 (223)
Q Consensus 127 ~~ELLVIlVVALLVfG 142 (223)
.|+..+|++|+-|++|
T Consensus 7 ~W~~a~igLvvGi~IG 22 (138)
T COG3105 7 TWEYALIGLVVGIIIG 22 (138)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5888899988888887
No 56
>PTZ00269 variant surface glycoprotein; Provisional
Probab=29.53 E-value=1.1e+02 Score=30.45 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=7.1
Q ss_pred CCCCCCCCCCCCCC
Q 027443 210 TSTEDSQTVADPSE 223 (223)
Q Consensus 210 ~~~~~a~~~~~pn~ 223 (223)
+|-++-.++.|-||
T Consensus 394 ~~~~~~~~~~~~~~ 407 (472)
T PTZ00269 394 DPSDPTQSTTHTNE 407 (472)
T ss_pred CCCCCcccccccch
Confidence 34444555555553
No 57
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=27.93 E-value=94 Score=26.06 Aligned_cols=10 Identities=10% Similarity=0.408 Sum_probs=5.4
Q ss_pred cccCCChHHH
Q 027443 121 SLFGVGAPEA 130 (223)
Q Consensus 121 ~MFgIG~~EL 130 (223)
+||+++++.+
T Consensus 21 ~~~~~~~t~~ 30 (184)
T PRK13455 21 PFFSLSNTDF 30 (184)
T ss_pred CCCCCcchHH
Confidence 5666654443
No 58
>PRK14861 tatA twin arginine translocase protein A; Provisional
Probab=27.04 E-value=1.3e+02 Score=22.02 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Q 027443 151 RNLGKTLRAFQPTIRELQDVSREFKSTLER 180 (223)
Q Consensus 151 R~lGK~iR~fK~~~~eiqd~s~Efk~eler 180 (223)
+.+-+..|.+-++++++++..++++++.+.
T Consensus 24 ~kLP~l~r~~G~~~~~fk~~~~~~~~~~~~ 53 (61)
T PRK14861 24 KKLPELGKALGKTLREFKKATKELTDDDFQ 53 (61)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 445555566666667776666666666553
No 59
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=26.84 E-value=1.6e+02 Score=23.59 Aligned_cols=31 Identities=19% Similarity=0.128 Sum_probs=18.5
Q ss_pred CCChHHHHHHHhhhhheECCccHHHHHHHHHH
Q 027443 124 GVGAPEALVIGVVALLVFGPKGLAEVARNLGK 155 (223)
Q Consensus 124 gIG~~ELLVIlVVALLVfGPkKLPelaR~lGK 155 (223)
|+..-|++|+++|+-|+.+ =-+|.+...+.+
T Consensus 2 GFTLiEllivlaIigil~~-i~~p~~~~~~~~ 32 (134)
T TIGR01710 2 GFTLLEIMVVLVILGLLAA-LVAPKLFSQADK 32 (134)
T ss_pred ceeHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 5677898887777655543 234555554443
No 60
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=24.61 E-value=1.2e+02 Score=23.99 Aligned_cols=19 Identities=11% Similarity=0.065 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 027443 149 VARNLGKTLRAFQPTIREL 167 (223)
Q Consensus 149 laR~lGK~iR~fK~~~~ei 167 (223)
+.+.+.+--..+....++.
T Consensus 30 i~~~l~~R~~~I~~~l~~A 48 (140)
T PRK07353 30 VGKVVEEREDYIRTNRAEA 48 (140)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5554444444444444433
No 61
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.23 E-value=1.8e+02 Score=21.64 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=21.8
Q ss_pred CCChHHHHHHHhhhhheECCccHHHHHHHHHHH
Q 027443 124 GVGAPEALVIGVVALLVFGPKGLAEVARNLGKT 156 (223)
Q Consensus 124 gIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~ 156 (223)
|+..-|++|+++|+-|+.. -=+|.+.+...+.
T Consensus 9 GFTLiElLVvl~Iigil~~-~~~p~~~~~~~~~ 40 (149)
T COG2165 9 GFTLIELLVVLAIIGILAA-LALPSLQGSIDKA 40 (149)
T ss_pred CcchHHHHHHHHHHHHHHH-HHHhhhhhHHHHH
Confidence 7788899888777666544 4566666655555
No 62
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=23.48 E-value=2.5e+02 Score=23.33 Aligned_cols=13 Identities=23% Similarity=0.123 Sum_probs=8.3
Q ss_pred eecccCCChHHHH
Q 027443 119 YASLFGVGAPEAL 131 (223)
Q Consensus 119 ~~~MFgIG~~ELL 131 (223)
.+.||++.++.++
T Consensus 8 ~~~~l~~~~~~~~ 20 (173)
T PRK13460 8 GLSLLDVNPGLVV 20 (173)
T ss_pred CCCccCCcHhHHH
Confidence 3577888765554
No 63
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=22.83 E-value=44 Score=20.90 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=12.7
Q ss_pred hHHHHHHHhhhhheECC
Q 027443 127 APEALVIGVVALLVFGP 143 (223)
Q Consensus 127 ~~ELLVIlVVALLVfGP 143 (223)
..-+++++.|.|+++|-
T Consensus 5 ~FalivVLFILLiIvG~ 21 (24)
T PF09680_consen 5 GFALIVVLFILLIIVGA 21 (24)
T ss_pred cchhHHHHHHHHHHhcc
Confidence 35578888888888874
No 64
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=22.74 E-value=1e+02 Score=26.90 Aligned_cols=37 Identities=5% Similarity=-0.014 Sum_probs=19.3
Q ss_pred HHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHH
Q 027443 131 LVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL 167 (223)
Q Consensus 131 LVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~ei 167 (223)
+|.++|.++|+.-=-+|.+.+.|-+--..+...+++.
T Consensus 60 ~I~FliL~~lL~k~~~~pI~~vLe~R~~~I~~~L~~A 96 (204)
T PRK09174 60 AITFGLFYLFMSRVILPRIGGIIETRRDRIAQDLDQA 96 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455667776665555555544443
No 65
>PRK04654 sec-independent translocase; Provisional
Probab=21.63 E-value=3.1e+02 Score=25.01 Aligned_cols=16 Identities=0% Similarity=-0.097 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHhH
Q 027443 147 AEVARNLGKTLRAFQP 162 (223)
Q Consensus 147 PelaR~lGK~iR~fK~ 162 (223)
-.+++.++++-+.+++
T Consensus 30 RtlGk~irk~R~~~~~ 45 (214)
T PRK04654 30 RFAGLWVRRARMQWDS 45 (214)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444333333
No 66
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=21.62 E-value=4.1e+02 Score=20.94 Aligned_cols=13 Identities=38% Similarity=0.669 Sum_probs=9.1
Q ss_pred heECCccHHHHHH
Q 027443 139 LVFGPKGLAEVAR 151 (223)
Q Consensus 139 LVfGPkKLPelaR 151 (223)
++||...+..+.+
T Consensus 19 l~~g~~G~~~~~~ 31 (105)
T PRK00888 19 LWFGKNGILDYWR 31 (105)
T ss_pred HhccCCcHHHHHH
Confidence 6789987765544
No 67
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=21.59 E-value=1.5e+02 Score=24.93 Aligned_cols=12 Identities=25% Similarity=0.249 Sum_probs=7.5
Q ss_pred eecccCCChHHH
Q 027443 119 YASLFGVGAPEA 130 (223)
Q Consensus 119 ~~~MFgIG~~EL 130 (223)
..+|||+.++=+
T Consensus 16 ~~~~f~~n~~~~ 27 (184)
T CHL00019 16 SAGSFGFNTDIL 27 (184)
T ss_pred ccCccCCcchHH
Confidence 446888876433
Done!