Query 027443
Match_columns 223
No_of_seqs 167 out of 1200
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 16:44:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027443.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027443hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l16_A SEC-independent protein 99.8 1.3E-19 4.5E-24 135.6 5.1 70 121-194 1-70 (78)
2 2yy8_A ATRM56, UPF0106 protein 44.2 7.1 0.00024 33.7 1.1 43 111-154 72-121 (201)
3 2cqq_A RSGI RUH-037, DNAJ homo 40.6 16 0.00053 26.1 2.3 34 134-167 19-55 (72)
4 2o3a_A UPF0106 protein AF_0751 30.8 13 0.00044 31.6 0.6 43 110-153 72-117 (178)
5 2gxg_A 146AA long hypothetical 23.8 65 0.0022 23.0 3.2 42 121-165 31-72 (146)
6 2cjj_A Radialis; plant develop 19.8 69 0.0024 23.9 2.7 34 136-169 21-58 (93)
7 3vjz_A DMP19, putative unchara 18.2 1.2E+02 0.0041 25.3 4.1 33 134-166 81-113 (166)
8 2kog_A Vesicle-associated memb 17.1 85 0.0029 24.3 2.7 39 158-196 36-75 (119)
9 3oop_A LIN2960 protein; protei 16.0 1.8E+02 0.006 20.8 4.1 41 123-165 33-73 (143)
10 2w6b_A RHO guanine nucleotide 14.2 3.3E+02 0.011 19.1 4.9 31 151-181 6-36 (56)
No 1
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=99.78 E-value=1.3e-19 Score=135.65 Aligned_cols=70 Identities=26% Similarity=0.484 Sum_probs=47.1
Q ss_pred cccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHhcCccccchhhcCC
Q 027443 121 SLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNP 194 (223)
Q Consensus 121 ~MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~eiqd~s~Efk~elerEi~ldEIrk~tq~~ 194 (223)
+|||||++||+||+||+||||||+|||+++|++|+++|+||+++++.++.. +++. ++.++++++++++++
T Consensus 1 MMf~ig~~ElliIlvVaLlvfGpkkLP~l~r~lGk~ir~fK~~~~~~~~e~---~~~~-~~~el~~~~~~~~~~ 70 (78)
T 2l16_A 1 MFSNIGIPGLILIFVIALIIFGPSKLPEIGRAAGRTLLEFKSATKSLVSGD---EKEE-KSAELTAVKQDKNAG 70 (78)
T ss_dssp CCSSSCHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHHHHHHHHCC---C-------------------
T ss_pred CCCCCCHHHHHHHHHHHhheeCccHhHHHHHHHHHHHHHHHHHHHHhHhhh---hHHh-hHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999998766422 2221 334455666555544
No 2
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=44.18 E-value=7.1 Score=33.72 Aligned_cols=43 Identities=7% Similarity=0.108 Sum_probs=33.4
Q ss_pred hccccceeeecccCCChHHHHHHHh-------hhhheECCccHHHHHHHHH
Q 027443 111 RRCKRGVFYASLFGVGAPEALVIGV-------VALLVFGPKGLAEVARNLG 154 (223)
Q Consensus 111 ~~~~~~~~~~~MFgIG~~ELLVIlV-------VALLVfGPkKLPelaR~lG 154 (223)
.| .+.++|+.|.|+.+.+.+=-+- =.|||+|.+|.|.-.-.++
T Consensus 72 ~w-gG~VVHLTMYG~~i~dvi~eIr~~~~~~~~iLVVVGaeKVP~evYelA 121 (201)
T 2yy8_A 72 EF-TGVKVHLTMYGLHVDDVIEELKEKLKKGEDFMIIVGAEKVPREVYELA 121 (201)
T ss_dssp HC-CSEEEEEEEEEEEHHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHC
T ss_pred hc-CCEEEEEecCCCchHHHHHHHHhhcccCCCEEEEECCCcCCHHHHhhc
Confidence 44 7899999999999988754432 1789999999997665553
No 3
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=40.60 E-value=16 Score=26.15 Aligned_cols=34 Identities=18% Similarity=0.393 Sum_probs=25.7
Q ss_pred HhhhhheEC---CccHHHHHHHHHHHHHHHhHHHHHH
Q 027443 134 GVVALLVFG---PKGLAEVARNLGKTLRAFQPTIREL 167 (223)
Q Consensus 134 lVVALLVfG---PkKLPelaR~lGK~iR~fK~~~~ei 167 (223)
+.=||..|+ |+|.-.+|+.+||...++++....+
T Consensus 19 fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~L 55 (72)
T 2cqq_A 19 LTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQL 55 (72)
T ss_dssp HHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence 344556777 7899999999998888887666544
No 4
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=30.81 E-value=13 Score=31.62 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=28.4
Q ss_pred hhccccceeeecccCCChHHHHHHHh---hhhheECCccHHHHHHHH
Q 027443 110 KRRCKRGVFYASLFGVGAPEALVIGV---VALLVFGPKGLAEVARNL 153 (223)
Q Consensus 110 ~~~~~~~~~~~~MFgIG~~ELLVIlV---VALLVfGPkKLPelaR~l 153 (223)
|.| .+.++|+.|.|+.+.+.+=-+- =.|+|+|.+|.|.-.-.+
T Consensus 72 ~~w-~G~VVHLTMYG~~i~dvi~~Ir~~~~iLvVVGaeKVP~evYel 117 (178)
T 2o3a_A 72 REF-DGLKVHLTMYGIPLPQKLEEIKRADKVLVVVGAEKVPPEVYEL 117 (178)
T ss_dssp HHC-CSEEEEEEEEEEEHHHHHHHHHTCSEEEEEEC----CTTHHHH
T ss_pred HHc-CCEEEEEecCCCchHHHHHHhhcCCCEEEEECCCcCCHHHHhh
Confidence 344 7899999999999987643322 368999999999755444
No 5
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=23.75 E-value=65 Score=22.97 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=30.5
Q ss_pred cccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHH
Q 027443 121 SLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIR 165 (223)
Q Consensus 121 ~MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~ 165 (223)
.-+|++..|+.++.++. -||-..-++++.+|-.-..+.+.++
T Consensus 31 ~~~~l~~~~~~iL~~l~---~~~~~~~ela~~l~~s~~tvs~~l~ 72 (146)
T 2gxg_A 31 GELNLSYLDFLVLRATS---DGPKTMAYLANRYFVTQSAITASVD 72 (146)
T ss_dssp HTTTCCHHHHHHHHHHT---TSCBCHHHHHHHTTCCHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHh---cCCcCHHHHHHHhCCCchhHHHHHH
Confidence 34689999999888776 7888999999988755444444333
No 6
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=19.84 E-value=69 Score=23.85 Aligned_cols=34 Identities=32% Similarity=0.455 Sum_probs=25.9
Q ss_pred hhhheEC---CccHHHHHHHH-HHHHHHHhHHHHHHhh
Q 027443 136 VALLVFG---PKGLAEVARNL-GKTLRAFQPTIRELQD 169 (223)
Q Consensus 136 VALLVfG---PkKLPelaR~l-GK~iR~fK~~~~eiqd 169 (223)
-+|..+| |.|.-.+|+.+ ||...+.|.-...+.+
T Consensus 21 ~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~ 58 (93)
T 2cjj_A 21 RALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE 58 (93)
T ss_dssp HHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3445567 89999999999 6888888877765543
No 7
>3vjz_A DMP19, putative uncharacterized protein; helix bundle, DNA mimic, gene regulation; 1.80A {Neisseria meningitidis}
Probab=18.19 E-value=1.2e+02 Score=25.26 Aligned_cols=33 Identities=15% Similarity=0.049 Sum_probs=27.3
Q ss_pred HhhhhheECCccHHHHHHHHHHHHHHHhHHHHH
Q 027443 134 GVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE 166 (223)
Q Consensus 134 lVVALLVfGPkKLPelaR~lGK~iR~fK~~~~e 166 (223)
+.-+|=.+|-+++|++.+.+-+.+.+-+..+..
T Consensus 81 ~akalr~wG~~~l~kli~kA~klY~~~~~~ie~ 113 (166)
T 3vjz_A 81 LADSLRRWKIKAVPKVLDKAKALYEQHGKTIET 113 (166)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHHHhhhHHHH
Confidence 456778899999999999999999888766554
No 8
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=17.08 E-value=85 Score=24.27 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=24.5
Q ss_pred HHHhHHHHHHhhh-HHHHHHHHHHhcCccccchhhcCCCC
Q 027443 158 RAFQPTIRELQDV-SREFKSTLEREIGLDDISTSTQNPNN 196 (223)
Q Consensus 158 R~fK~~~~eiqd~-s~Efk~elerEi~ldEIrk~tq~~~~ 196 (223)
.+++..++|++++ .+++++-++|...+|++.+.+.+...
T Consensus 36 ~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~ 75 (119)
T 2kog_A 36 QQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 75 (119)
T ss_dssp HHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3445455555442 34566667788889998887776544
No 9
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=16.01 E-value=1.8e+02 Score=20.76 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=30.5
Q ss_pred cCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHH
Q 027443 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIR 165 (223)
Q Consensus 123 FgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~ 165 (223)
+|++..|+.++.++.-- ||-..-++++.+|-.-..+-+.++
T Consensus 33 ~~lt~~~~~iL~~l~~~--~~~t~~eLa~~l~~~~~~vs~~l~ 73 (143)
T 3oop_A 33 YDVTPEQWSVLEGIEAN--EPISQKEIALWTKKDTPTVNRIVD 73 (143)
T ss_dssp SSSCHHHHHHHHHHHHH--SSEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc--CCcCHHHHHHHHCCCHhhHHHHHH
Confidence 68999999888877654 888999999998755444444443
No 10
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=14.22 E-value=3.3e+02 Score=19.12 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHhhhHHHHHHHHHHh
Q 027443 151 RNLGKTLRAFQPTIRELQDVSREFKSTLERE 181 (223)
Q Consensus 151 R~lGK~iR~fK~~~~eiqd~s~Efk~elerE 181 (223)
+++--.+-.+|..+.+++...+..+..+++|
T Consensus 6 KSlVDtVYaLkDqV~eL~qe~k~m~k~lEeE 36 (56)
T 2w6b_A 6 KSLVDTVYALKDEVQELRQDNKKMKKSLEEE 36 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!