Query 027443
Match_columns 223
No_of_seqs 167 out of 1200
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 16:44:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027443.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027443hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pila_ d.24.1.1 (A:) Pilin Gc 33.4 40 0.0029 22.3 5.4 30 126-156 2-31 (158)
2 d2o3aa1 c.116.1.8 (A:1-167) Un 25.0 7.9 0.00058 30.6 0.3 39 114-152 73-114 (167)
3 d1rp3a1 a.4.13.1 (A:87-163) Si 22.2 23 0.0016 22.9 2.2 19 170-188 15-33 (77)
4 d1l0oc_ a.4.13.2 (C:) SigmaF { 19.0 31 0.0023 21.5 2.2 20 172-191 22-41 (57)
5 d1twfk_ d.74.3.2 (K:) RPB11 {B 11.5 1.1E+02 0.0077 21.4 3.7 27 160-186 87-113 (114)
6 d1lnwa_ a.4.5.28 (A:) MexR rep 10.0 1.2E+02 0.0089 20.6 3.6 41 122-164 31-71 (141)
7 d1sfxa_ a.4.5.50 (A:) Hypothet 9.7 1.9E+02 0.014 19.1 4.4 43 122-166 15-57 (109)
8 d2a61a1 a.4.5.28 (A:5-143) Tra 9.6 1.6E+02 0.011 19.8 4.0 38 123-162 26-63 (139)
9 d2cqqa1 a.4.1.3 (A:8-66) DnaJ 9.0 80 0.0058 20.2 2.0 34 135-168 13-49 (59)
10 d1ku2a1 a.4.13.1 (A:273-332) S 7.3 1E+02 0.0075 19.3 1.9 19 173-191 20-38 (60)
No 1
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=33.44 E-value=40 Score=22.32 Aligned_cols=30 Identities=7% Similarity=0.072 Sum_probs=19.4
Q ss_pred ChHHHHHHHhhhhheECCccHHHHHHHHHHH
Q 027443 126 GAPEALVIGVVALLVFGPKGLAEVARNLGKT 156 (223)
Q Consensus 126 G~~ELLVIlVVALLVfGPkKLPelaR~lGK~ 156 (223)
..-||+|+++|+-|+-+ =-+|.+.+..-+.
T Consensus 2 TLIELlVViaIIgILaa-ia~P~~~~~~~~a 31 (158)
T d2pila_ 2 TLIELMIVIAIVGILAA-VALPAYQDYTARA 31 (158)
T ss_dssp CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 45688887777665554 3388887765543
No 2
>d2o3aa1 c.116.1.8 (A:1-167) Uncharacterized protein AF0751 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=25.02 E-value=7.9 Score=30.59 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=25.6
Q ss_pred ccceeeecccCCChHHHHHHHhh---hhheECCccHHHHHHH
Q 027443 114 KRGVFYASLFGVGAPEALVIGVV---ALLVFGPKGLAEVARN 152 (223)
Q Consensus 114 ~~~~~~~~MFgIG~~ELLVIlVV---ALLVfGPkKLPelaR~ 152 (223)
.+.++|+.|.|+.+.|.+==+=- .|+|+|.+|.|.=.=.
T Consensus 73 ~G~vVHLTMYG~~~~~~~~~Ir~~~~ilvVVGaeKVP~evye 114 (167)
T d2o3aa1 73 DGLKVHLTMYGIPLPQKLEEIKRADKVLVVVGAEKVPPEVYE 114 (167)
T ss_dssp CSEEEEEEEEEEEHHHHHHHHHTCSEEEEEEC----CTTHHH
T ss_pred CCEEEEeecCCCchHHHhhhcccCCCEEEEECCccCCHHHHh
Confidence 68999999999999985432111 6899999999964443
No 3
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=22.24 E-value=23 Score=22.91 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHhcCccccc
Q 027443 170 VSREFKSTLEREIGLDDIS 188 (223)
Q Consensus 170 ~s~Efk~elerEi~ldEIr 188 (223)
...++.+++.++...+|+.
T Consensus 15 a~~~L~~~lGR~Pt~~EiA 33 (77)
T d1rp3a1 15 VVEKLKEKLGREPTDEEVA 33 (77)
T ss_dssp HHHHHHHHHSSCCCHHHHH
T ss_pred HHHHHHHHHCcCCCHHHHH
Confidence 3334444444443333333
No 4
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=18.95 E-value=31 Score=21.55 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCccccchhh
Q 027443 172 REFKSTLEREIGLDDISTST 191 (223)
Q Consensus 172 ~Efk~elerEi~ldEIrk~t 191 (223)
+++.+++.++...+|+.+.+
T Consensus 22 ~~l~q~lgRePT~~EiA~~l 41 (57)
T d1l0oc_ 22 DELSKTRGRAPTVTEIADHL 41 (57)
T ss_dssp HHHHHHHTSCCBHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHH
Confidence 34555666666666665544
No 5
>d1twfk_ d.74.3.2 (K:) RPB11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.46 E-value=1.1e+02 Score=21.43 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=14.0
Q ss_pred HhHHHHHHhhhHHHHHHHHHHhcCccc
Q 027443 160 FQPTIRELQDVSREFKSTLEREIGLDD 186 (223)
Q Consensus 160 fK~~~~eiqd~s~Efk~elerEi~ldE 186 (223)
++++.+++.+..+.+++++++|.++..
T Consensus 87 l~~a~~~l~~~~~~l~~~f~~e~~~~~ 113 (114)
T d1twfk_ 87 LKNACNSIINKLGALKTNFETEWNLQT 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 344444444444456666666655543
No 6
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.97 E-value=1.2e+02 Score=20.64 Aligned_cols=41 Identities=12% Similarity=0.232 Sum_probs=29.0
Q ss_pred ccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHH
Q 027443 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTI 164 (223)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~ 164 (223)
=+||+..|+-++.++. -.++-...++++.++..-..+.+.+
T Consensus 31 ~~~lt~~q~~vL~~l~--~~~~~t~~~la~~l~~~~~~vsr~l 71 (141)
T d1lnwa_ 31 RLDLTPPDVHVLKLID--EQRGLNLQDLGRQMCRDKALITRKI 71 (141)
T ss_dssp TCCCCHHHHHHHHHHH--SSTTCBHHHHHHHTTCCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH--HCCCCCHHHHHHHHCccHhHHHHHH
Confidence 3689999999998876 3666688888887765544444333
No 7
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=9.72 E-value=1.9e+02 Score=19.07 Aligned_cols=43 Identities=16% Similarity=0.274 Sum_probs=32.5
Q ss_pred ccCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhHHHHH
Q 027443 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE 166 (223)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~~~~e 166 (223)
=||++..|+-|+.++ +--||-..-++++.+|---..+.+.++.
T Consensus 15 ~lGlt~~e~~v~~~L--~~~g~~t~~eia~~~~i~~~~v~~~l~~ 57 (109)
T d1sfxa_ 15 KLSFKPSDVRIYSLL--LERGGMRVSEIARELDLSARFVRDRLKV 57 (109)
T ss_dssp HTCCCHHHHHHHHHH--HHHCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHH--HhcCCCCHHHHHHHhCCCcchHHHHHHH
Confidence 389999998887766 4569999999999997665555554443
No 8
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=9.60 E-value=1.6e+02 Score=19.83 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=29.1
Q ss_pred cCCChHHHHHHHhhhhheECCccHHHHHHHHHHHHHHHhH
Q 027443 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQP 162 (223)
Q Consensus 123 FgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fK~ 162 (223)
+|++..|+.++..|.- -||-..-++++.+|-.-..+-+
T Consensus 26 ~glt~~q~~iL~~i~~--~~~~t~~~la~~l~i~~~tvs~ 63 (139)
T d2a61a1 26 FGITPAQFDILQKIYF--EGPKRPGELSVLLGVAKSTVTG 63 (139)
T ss_dssp HTCCHHHHHHHHHHHH--HCCBCHHHHHHHHTCCHHHHHH
T ss_pred cCCCHHHHHHHHHHHH--cCCCCHHHHHHHhCCCcccchH
Confidence 4899999999988864 6888999999988655444333
No 9
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.95 E-value=80 Score=20.23 Aligned_cols=34 Identities=18% Similarity=0.451 Sum_probs=22.8
Q ss_pred hhhhheEC---CccHHHHHHHHHHHHHHHhHHHHHHh
Q 027443 135 VVALLVFG---PKGLAEVARNLGKTLRAFQPTIRELQ 168 (223)
Q Consensus 135 VVALLVfG---PkKLPelaR~lGK~iR~fK~~~~eiq 168 (223)
.-||..|. |+|.=.+|..+||...+..+..++++
T Consensus 13 e~Al~~~P~gt~~RW~~IA~~vgkt~~ev~~~~k~l~ 49 (59)
T d2cqqa1 13 TRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQLK 49 (59)
T ss_dssp HHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCcHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444443 67888899999887776666555443
No 10
>d1ku2a1 a.4.13.1 (A:273-332) Sigma factor SigA {Thermus aquaticus [TaxId: 271]}
Probab=7.32 E-value=1e+02 Score=19.34 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=9.8
Q ss_pred HHHHHHHHhcCccccchhh
Q 027443 173 EFKSTLEREIGLDDISTST 191 (223)
Q Consensus 173 Efk~elerEi~ldEIrk~t 191 (223)
++.++++++-..+|+.+.+
T Consensus 20 ~l~qe~gRePt~eEiA~~l 38 (60)
T d1ku2a1 20 QLQQELGREPSYEEIAEAM 38 (60)
T ss_dssp HHHHHHTSCCCHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHH
Confidence 4445555555555555443
Done!