BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027444
         (223 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A1W165|TRUD_CAMJJ tRNA pseudouridine synthase D OS=Campylobacter jejuni subsp. jejuni
           serotype O:23/36 (strain 81-176) GN=truD PE=3 SV=1
          Length = 372

 Score = 33.9 bits (76), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 140 LHGKIVVAVDVDEVL-GNFVSAL-NRFIADRYSLNHSVSEYHVYEFFKIWNCSRDEGK 195
           LHGK +  V + E L   F S L NR+++ R  L+H  +++   E  +I+  S++E K
Sbjct: 184 LHGKKMKNVKMKEFLISAFQSELFNRYLSKRVELSHFANDFSEKELIQIYKISKEEAK 241


>sp|Q6YYZ1|LDL2_ORYSJ Lysine-specific histone demethylase 1 homolog 2 OS=Oryza sativa
           subsp. japonica GN=Os08g0143400 PE=2 SV=1
          Length = 763

 Score = 33.1 bits (74), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 28  LMSCAIR--SDPICKGFHSNVTNNSS--DINIINSSSNGFLRFKGKVNN 72
           + SC  R  SDP+C G +S++   SS  D +I+  S N  L F G+  N
Sbjct: 526 IQSCCTRWGSDPLCSGSYSHIRVGSSGTDYDILAESVNDRLFFAGEATN 574


>sp|Q09624|PKD1_CAEEL Location of vulva defective 1 OS=Caenorhabditis elegans GN=lov-1 PE=1
            SV=4
          Length = 3284

 Score = 31.2 bits (69), Expect = 6.4,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 15/136 (11%)

Query: 52   DINIINSSSNGFLRFKGKVNNGSLILRGCFDSTNRVNAGA----------DQKVGAFAPP 101
            D+N +N +SN F+     +NN  L   G     +  N G           D    +FA  
Sbjct: 2108 DLNTLNKTSNYFVTAGNLINNTGLFFIGIGKRNSSTNTGNSSDIVNYGQYDSMQWSFARS 2167

Query: 102  QRVPHLEIAAAEGCTDARLVNGRGSSERGNPLGFFDSHLHGKIVVAVDVDEVLGNFVSAL 161
              + +   A ++GC        + +S+  N  G + S   G   V    D +    V A 
Sbjct: 2168 VPMDYQVAAVSKGCYFY-----QKTSDVFNSEGMYPSDGQGMQFVNCSTDHLTMFSVGAF 2222

Query: 162  NRFIADRYSLNHSVSE 177
            N  I   +S N++V+E
Sbjct: 2223 NPTIDADFSYNYNVNE 2238


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.137    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,742,326
Number of Sequences: 539616
Number of extensions: 3481199
Number of successful extensions: 10230
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 9974
Number of HSP's gapped (non-prelim): 255
length of query: 223
length of database: 191,569,459
effective HSP length: 113
effective length of query: 110
effective length of database: 130,592,851
effective search space: 14365213610
effective search space used: 14365213610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)