Query 027444
Match_columns 223
No_of_seqs 40 out of 42
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 10:01:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027444.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027444hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06941 NT5C: 5' nucleotidase 99.1 3.2E-12 6.9E-17 103.6 -2.5 77 143-219 2-101 (191)
2 COG4502 5'(3')-deoxyribonucleo 96.7 0.0026 5.7E-08 55.0 4.5 72 142-217 2-93 (180)
3 TIGR01672 AphA HAD superfamily 85.6 0.082 1.8E-06 46.4 -2.9 68 143-216 63-139 (237)
4 PRK11009 aphA acid phosphatase 77.0 0.15 3.3E-06 44.8 -4.4 71 143-217 63-140 (237)
5 PF14633 SH2_2: SH2 domain; PD 76.7 1.7 3.7E-05 38.5 2.1 25 148-172 112-136 (220)
6 TIGR01680 Veg_Stor_Prot vegeta 75.6 0.97 2.1E-05 41.5 0.2 73 141-222 99-176 (275)
7 TIGR01675 plant-AP plant acid 65.3 1.2 2.7E-05 39.5 -1.4 98 101-222 50-151 (229)
8 TIGR02251 HIF-SF_euk Dullard-l 65.0 5 0.00011 32.6 2.2 15 143-157 1-15 (162)
9 PF03708 Avian_gp85: Avian ret 53.8 5.3 0.00011 36.7 0.5 17 179-195 103-119 (256)
10 TIGR01533 lipo_e_P4 5'-nucleot 51.3 4.7 0.0001 36.3 -0.1 71 141-221 73-148 (266)
11 PF03767 Acid_phosphat_B: HAD 43.6 2.7 5.8E-05 36.4 -2.8 72 141-222 70-146 (229)
12 PF01229 Glyco_hydro_39: Glyco 41.7 9.3 0.0002 36.3 0.2 32 152-188 132-163 (486)
13 PHA02597 30.2 hypothetical pro 38.7 19 0.00042 28.7 1.6 54 143-199 2-62 (197)
14 PRK02922 glycogen synthesis pr 36.9 17 0.00036 27.8 0.9 24 147-170 28-51 (67)
15 cd01427 HAD_like Haloacid deha 36.8 4.4 9.5E-05 28.4 -2.1 13 145-157 1-13 (139)
16 cd03672 Dcp2p mRNA decapping e 30.9 30 0.00066 27.6 1.5 19 154-172 127-145 (145)
17 PF05722 Ustilago_mating: Usti 25.4 34 0.00074 31.6 1.0 35 146-183 37-86 (286)
18 PF08971 GlgS: Glycogen synthe 22.8 45 0.00098 25.3 1.1 24 147-170 27-50 (66)
19 PF12221 HflK_N: Bacterial mem 22.5 46 0.00099 22.9 1.0 17 148-164 21-37 (42)
20 TIGR02250 FCP1_euk FCP1-like p 21.7 50 0.0011 27.0 1.3 18 141-158 4-21 (156)
21 KOG3463 Transcription initiati 20.8 99 0.0022 25.6 2.7 37 152-188 36-74 (109)
No 1
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=99.12 E-value=3.2e-12 Score=103.58 Aligned_cols=77 Identities=23% Similarity=0.337 Sum_probs=61.9
Q ss_pred CeEEEEechhhhhhhHHHHHHHHHhhhcCC--cccccceeEEEEeecCCChhcccceEE-Ee----eecc-----C----
Q 027444 143 KIVVAVDVDEVLGNFVSALNRFIADRYSLN--HSVSEYHVYEFFKIWNCSRDEGKFLLL-LT----SFND-----E---- 206 (223)
Q Consensus 143 k~vVAVDlDEVLg~Fl~aLnKfhnd~Ygt~--~sVSDfhvY~F~KIWncSeEES~~~Vh-Fy----~F~~-----G---- 206 (223)
+.+||||+|+||.+|..++.+|+|+.|+++ ++..|...|.+++.||++.+|..+.++ |+ .|.+ |
T Consensus 2 ~i~I~iDiDgVLad~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~~~~~~~f~~l~p~~gA~e~ 81 (191)
T PF06941_consen 2 KIRIAIDIDGVLADFNSAFIEWFNEEFGKNPELTPEDITGYWDWEKWGITEPEFYEKLWRFYEEPGFFSNLPPIPGAVEA 81 (191)
T ss_dssp -EEEEEESBTTTB-HHHHHHHHHHHHTTTS----GGGGTSSSHHHHHHHHSTTHHHHHHHHHTSTTTTTT--B-TTHHHH
T ss_pred CcEEEEECCCCCcccHHHHHHHHHHHcCCCCCCCHHHhhhhhHHHHhCCCCHHHHHHHHHHHhChhhhcCCCccHHHHHH
Confidence 345999999999999999999999999999 888898888999999999988888887 55 3443 2
Q ss_pred -------ccEEEEEccchhh
Q 027444 207 -------ICIFLLLTSSNDE 219 (223)
Q Consensus 207 -------~~~LvIVTSRQd~ 219 (223)
++.++|||+|+..
T Consensus 82 l~~L~~~g~~~~~Itar~~~ 101 (191)
T PF06941_consen 82 LKKLRDKGHEIVIITARPPE 101 (191)
T ss_dssp HHHHHTSTTEEEEEEE-SSS
T ss_pred HHHHHHcCCcEEEEEecCcc
Confidence 5689999999754
No 2
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=96.65 E-value=0.0026 Score=54.99 Aligned_cols=72 Identities=21% Similarity=0.241 Sum_probs=54.4
Q ss_pred CCeEEEEechhhhhhhHHHHHHHHHhhhcC-CcccccceeEEEEeecCCChhcccceEE-Ee---eecc-C---------
Q 027444 142 GKIVVAVDVDEVLGNFVSALNRFIADRYSL-NHSVSEYHVYEFFKIWNCSRDEGKFLLL-LT---SFND-E--------- 206 (223)
Q Consensus 142 ~k~vVAVDlDEVLg~Fl~aLnKfhnd~Ygt-~~sVSDfhvY~F~KIWncSeEES~~~Vh-Fy---~F~~-G--------- 206 (223)
.|++||||+|+||..++.-..+.+| .|.- -++.+| --.|+|=+...++...+-+ -+ -|.+ |
T Consensus 2 ~kk~iaIDmD~vLadll~ewv~~~N-~y~D~~lk~~d---i~gwdik~yv~~~~g~i~~il~ep~fFRnL~V~p~aq~v~ 77 (180)
T COG4502 2 NKKTIAIDMDTVLADLLREWVKRYN-IYKDKLLKMSD---IKGWDIKNYVKPECGKIYDILKEPHFFRNLGVQPFAQTVL 77 (180)
T ss_pred CCceEEeeHHHHHHHHHHHHHHHhh-hccccCcChHh---hcccchhhccCccCCeeeeeccCcchhhhcCccccHHHHH
Confidence 5899999999999999988888887 4532 233455 4578999999998887766 33 3444 2
Q ss_pred -----ccEEEEEccch
Q 027444 207 -----ICIFLLLTSSN 217 (223)
Q Consensus 207 -----~~~LvIVTSRQ 217 (223)
.+.+||||+--
T Consensus 78 keLt~~y~vYivtaam 93 (180)
T COG4502 78 KELTSIYNVYIVTAAM 93 (180)
T ss_pred HHHHhhheEEEEEecc
Confidence 79999999763
No 3
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=85.65 E-value=0.082 Score=46.37 Aligned_cols=68 Identities=16% Similarity=0.085 Sum_probs=41.6
Q ss_pred CeEEEEechhhhhhhHHHHHHHHHhhhcCCc-cccc---ceeEEEEeecCCChhc-ccce--EE-Ee-eeccCccEEEEE
Q 027444 143 KIVVAVDVDEVLGNFVSALNRFIADRYSLNH-SVSE---YHVYEFFKIWNCSRDE-GKFL--LL-LT-SFNDEICIFLLL 213 (223)
Q Consensus 143 k~vVAVDlDEVLg~Fl~aLnKfhnd~Ygt~~-sVSD---fhvY~F~KIWncSeEE-S~~~--Vh-Fy-~F~~G~~~LvIV 213 (223)
.+.|-+|+|++|..-.... .+|.+. +-.+ ++.-.||+.|..-.++ +... +. |. +-+.-+.+++||
T Consensus 63 p~aViFDlDgTLlDSs~~~------~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iV 136 (237)
T TIGR01672 63 PIAVSFDIDDTVLFSSPGF------WRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFV 136 (237)
T ss_pred CeEEEEeCCCccccCcHHH------hCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEE
Confidence 3589999999998877766 166662 2322 2233889888655421 1111 11 22 222338999999
Q ss_pred ccc
Q 027444 214 TSS 216 (223)
Q Consensus 214 TSR 216 (223)
|+|
T Consensus 137 Tnr 139 (237)
T TIGR01672 137 TGR 139 (237)
T ss_pred eCC
Confidence 998
No 4
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=76.96 E-value=0.15 Score=44.79 Aligned_cols=71 Identities=15% Similarity=0.083 Sum_probs=37.1
Q ss_pred CeEEEEechhhhhhhHHHHHHHHHhhhcCCcccccc-eeEEEEeecCCChhcccceEE-----Ee-eeccCccEEEEEcc
Q 027444 143 KIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVSEY-HVYEFFKIWNCSRDEGKFLLL-----LT-SFNDEICIFLLLTS 215 (223)
Q Consensus 143 k~vVAVDlDEVLg~Fl~aLnKfhnd~Ygt~~sVSDf-hvY~F~KIWncSeEES~~~Vh-----Fy-~F~~G~~~LvIVTS 215 (223)
++.|-+||||++=.- ++.-=+-++.|+.+ ..+| ..-+||+.|+--.+ ..-+.. |. +-.+.+++|+|||+
T Consensus 63 p~av~~DIDeTvldn-sp~~~~~~~~f~~~--~~~y~~~~~fw~~y~~~~~-~~a~p~~Ga~elL~~L~~~G~~I~iVTn 138 (237)
T PRK11009 63 PMAVGFDIDDTVLFS-SPGFWRGKKTFSPG--SEDYLKNQKFWEKMNNGWD-EFSIPKEVARQLIDMHVKRGDSIYFITG 138 (237)
T ss_pred CcEEEEECcCccccC-CchheeeeeccCCC--cccccChHHHHHHHHhccc-ccCcchHHHHHHHHHHHHCCCeEEEEeC
Confidence 359999999987520 01100013344433 2232 13378888865422 111111 22 22234899999999
Q ss_pred ch
Q 027444 216 SN 217 (223)
Q Consensus 216 RQ 217 (223)
|.
T Consensus 139 R~ 140 (237)
T PRK11009 139 RT 140 (237)
T ss_pred CC
Confidence 84
No 5
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=76.68 E-value=1.7 Score=38.50 Aligned_cols=25 Identities=20% Similarity=0.411 Sum_probs=21.4
Q ss_pred EechhhhhhhHHHHHHHHHhhhcCC
Q 027444 148 VDVDEVLGNFVSALNRFIADRYSLN 172 (223)
Q Consensus 148 VDlDEVLg~Fl~aLnKfhnd~Ygt~ 172 (223)
=||||+|.+||+||+....|...-.
T Consensus 112 eDLDEii~r~V~pm~~~v~~~~~h~ 136 (220)
T PF14633_consen 112 EDLDEIIARHVEPMARNVEEMMNHR 136 (220)
T ss_dssp SSHHHHHHHCHHHHHHHHHHHHCST
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3899999999999999998876533
No 6
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=75.60 E-value=0.97 Score=41.53 Aligned_cols=73 Identities=11% Similarity=0.084 Sum_probs=42.4
Q ss_pred CCCeEEEEechhhhhhhHHHHHHHHHhhhcCCcccccceeEEEEe-ecCCChhcc--cceEE-Ee-eeccCccEEEEEcc
Q 027444 141 HGKIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVSEYHVYEFFK-IWNCSRDEG--KFLLL-LT-SFNDEICIFLLLTS 215 (223)
Q Consensus 141 ~~k~vVAVDlDEVLg~Fl~aLnKfhnd~Ygt~~sVSDfhvY~F~K-IWncSeEES--~~~Vh-Fy-~F~~G~~~LvIVTS 215 (223)
+.+..|.+||||++-+-+. ..++| .||-+ . |.-.-|. -| ....++ ..-+. || +-.+-+.++++||+
T Consensus 99 ~~~dA~V~DIDET~LsN~p-Y~~~~--~~g~e----~-~~~~~w~~~W-v~~~~ApAlp~al~ly~~l~~~G~kIf~VSg 169 (275)
T TIGR01680 99 HEKDTFLFNIDGTALSNIP-YYKKH--GYGSE----K-FDSELYDEEF-VNKGEAPALPETLKNYNKLVSLGFKIIFLSG 169 (275)
T ss_pred CCCCEEEEECccccccCHH-HHHHh--cCCCC----c-CChhhhhHHH-HhcccCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 3678999999999887444 55555 56533 1 2222232 33 122212 22112 66 33334899999999
Q ss_pred chhhhhc
Q 027444 216 SNDEIRS 222 (223)
Q Consensus 216 RQd~IRE 222 (223)
|.+..|+
T Consensus 170 R~e~~r~ 176 (275)
T TIGR01680 170 RLKDKQA 176 (275)
T ss_pred CchhHHH
Confidence 9987664
No 7
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=65.34 E-value=1.2 Score=39.46 Aligned_cols=98 Identities=17% Similarity=0.093 Sum_probs=54.6
Q ss_pred CcccCchhhhhhccccccccccCCCCcCCCCCCCCCCCCCCCCeEEEEechhhhhhhHHHHHHHHHhhhcCCccccccee
Q 027444 101 PQRVPHLEIAAAEGCTDARLVNGRGSSERGNPLGFFDSHLHGKIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVSEYHV 180 (223)
Q Consensus 101 ~~~~~~~e~~~~e~~~~~~~~~g~g~~~~~~~~~f~~~~~~~k~vVAVDlDEVLg~Fl~aLnKfhnd~Ygt~~sVSDfhv 180 (223)
.|..+|.+....|...=++++.-. ...++.|.+||||++=+-+.-.. +| .||-+ .|.
T Consensus 50 ~~Y~~D~~~v~~~a~~y~~~~~~~---------------~dg~~A~V~DIDET~LsN~py~~-~~--~~g~~-----~~~ 106 (229)
T TIGR01675 50 KQYKRDVKRVVDEAYFYAKSLALS---------------GDGMDAWIFDVDDTLLSNIPYYK-KH--GYGTE-----KTD 106 (229)
T ss_pred cccHHHHHHHHHHHHHHHHHhhcc---------------CCCCcEEEEccccccccCHHHHH-Hh--ccCCC-----cCC
Confidence 366777777775553333333211 24789999999998877766444 44 35432 222
Q ss_pred EEEEeecCCChhc--ccceEE-Ee-eeccCccEEEEEccchhhhhc
Q 027444 181 YEFFKIWNCSRDE--GKFLLL-LT-SFNDEICIFLLLTSSNDEIRS 222 (223)
Q Consensus 181 Y~F~KIWncSeEE--S~~~Vh-Fy-~F~~G~~~LvIVTSRQd~IRE 222 (223)
-.=|.-| ....+ +..-+. |+ +-.+-++++++||+|.+..|+
T Consensus 107 ~~~~~~w-v~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~ 151 (229)
T TIGR01675 107 PTAFWLW-LGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRN 151 (229)
T ss_pred HHHHHHH-HHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHH
Confidence 2334444 11111 111111 44 333348999999999987654
No 8
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=64.99 E-value=5 Score=32.58 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=13.3
Q ss_pred CeEEEEechhhhhhh
Q 027444 143 KIVVAVDVDEVLGNF 157 (223)
Q Consensus 143 k~vVAVDlDEVLg~F 157 (223)
||.+.+|+||+|...
T Consensus 1 k~~lvlDLDeTLi~~ 15 (162)
T TIGR02251 1 KKTLVLDLDETLVHS 15 (162)
T ss_pred CcEEEEcCCCCcCCC
Confidence 688999999999866
No 9
>PF03708 Avian_gp85: Avian retrovirus envelope protein, gp85 ; InterPro: IPR005166 A family of a vain specific viral glycoproteins that forms a receptor-binding Gp95 polypeptide that is linked through disulphide to a membrane-spanning gp37 spike. Gp95 confers a high degree of subgroup specificity for interaction with distinct cell receptors [].; GO: 0019031 viral envelope
Probab=53.79 E-value=5.3 Score=36.67 Aligned_cols=17 Identities=35% Similarity=0.774 Sum_probs=14.9
Q ss_pred eeEEEEeecCCChhccc
Q 027444 179 HVYEFFKIWNCSRDEGK 195 (223)
Q Consensus 179 hvY~F~KIWncSeEES~ 195 (223)
|-|.||||+||++...+
T Consensus 103 ygyrfw~~yncs~~~~~ 119 (256)
T PF03708_consen 103 YGYRFWEIYNCSQTRYQ 119 (256)
T ss_pred ccccceeeeccccccce
Confidence 78999999999998654
No 10
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=51.32 E-value=4.7 Score=36.26 Aligned_cols=71 Identities=13% Similarity=0.173 Sum_probs=38.6
Q ss_pred CCCeEEEEechhhhhhhHHHHHHHHHhhhcCCcccccceeEEEEeecCCChhcccceEE----Ee-eeccCccEEEEEcc
Q 027444 141 HGKIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVSEYHVYEFFKIWNCSRDEGKFLLL----LT-SFNDEICIFLLLTS 215 (223)
Q Consensus 141 ~~k~vVAVDlDEVLg~Fl~aLnKfhnd~Ygt~~sVSDfhvY~F~KIWncSeEES~~~Vh----Fy-~F~~G~~~LvIVTS 215 (223)
..++.|.+||||.+-. +.+...|+. .-+.+ |.-+.|.=|.-..+ +. .+. |. +-...+.+++|||+
T Consensus 73 ~kp~AVV~DIDeTvLd-ns~y~~~~~-~~~~~------~~~~~w~~wv~~~~-a~-~ipGA~e~L~~L~~~G~~v~iVTn 142 (266)
T TIGR01533 73 DKKYAIVLDLDETVLD-NSPYQGYQV-LNNKP------FDPETWDKWVQAAQ-AK-PVAGALDFLNYANSKGVKIFYVSN 142 (266)
T ss_pred CCCCEEEEeCcccccc-ChHHHHHHh-cCCCc------CCHHHHHHHHHcCC-CC-cCccHHHHHHHHHHCCCeEEEEeC
Confidence 3568999999998864 334444431 12233 22344666643321 11 111 22 22233789999999
Q ss_pred chhhhh
Q 027444 216 SNDEIR 221 (223)
Q Consensus 216 RQd~IR 221 (223)
|....+
T Consensus 143 R~~~~~ 148 (266)
T TIGR01533 143 RSEKEK 148 (266)
T ss_pred CCcchH
Confidence 975443
No 11
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=43.61 E-value=2.7 Score=36.38 Aligned_cols=72 Identities=21% Similarity=0.172 Sum_probs=36.4
Q ss_pred CCCeEEEEechhh-hhhhHH-HHHHHHHhhhcCCcccccceeEEEEeecCCChh-cccceEE-Ee-eeccCccEEEEEcc
Q 027444 141 HGKIVVAVDVDEV-LGNFVS-ALNRFIADRYSLNHSVSEYHVYEFFKIWNCSRD-EGKFLLL-LT-SFNDEICIFLLLTS 215 (223)
Q Consensus 141 ~~k~vVAVDlDEV-Lg~Fl~-aLnKfhnd~Ygt~~sVSDfhvY~F~KIWncSeE-ES~~~Vh-Fy-~F~~G~~~LvIVTS 215 (223)
..++.|.+||||+ |.+.-. ....+.+..|..+ -|.-|=-..+ .+-.... |+ +-..-++++++||.
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~----------~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~ 139 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPE----------DWDEWVASGKAPAIPGALELYNYARSRGVKVFFITG 139 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CC----------HHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEE
T ss_pred CCCcEEEEECCcccccCHHHHHHHhhccCCCChH----------HHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEec
Confidence 4788999999997 544221 1111232333221 1333311111 1111111 55 22223899999999
Q ss_pred chhhhhc
Q 027444 216 SNDEIRS 222 (223)
Q Consensus 216 RQd~IRE 222 (223)
|.+..|+
T Consensus 140 R~~~~r~ 146 (229)
T PF03767_consen 140 RPESQRE 146 (229)
T ss_dssp EETTCHH
T ss_pred CCchhHH
Confidence 9987654
No 12
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=41.71 E-value=9.3 Score=36.26 Aligned_cols=32 Identities=41% Similarity=0.730 Sum_probs=24.5
Q ss_pred hhhhhhHHHHHHHHHhhhcCCcccccceeEEEEeecC
Q 027444 152 EVLGNFVSALNRFIADRYSLNHSVSEYHVYEFFKIWN 188 (223)
Q Consensus 152 EVLg~Fl~aLnKfhnd~Ygt~~sVSDfhvY~F~KIWn 188 (223)
+.=..++.++++++.++||.+ .|+. |+ |||||
T Consensus 132 ~~W~~lv~~~~~h~~~RYG~~-ev~~-W~---fEiWN 163 (486)
T PF01229_consen 132 EKWRDLVRAFARHYIDRYGIE-EVST-WY---FEIWN 163 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHTT-SE---EEESS
T ss_pred HHHHHHHHHHHHHHHhhcCCc-cccc-ee---EEeCc
Confidence 677899999999999999986 2443 54 55555
No 13
>PHA02597 30.2 hypothetical protein; Provisional
Probab=38.71 E-value=19 Score=28.74 Aligned_cols=54 Identities=24% Similarity=0.351 Sum_probs=35.3
Q ss_pred CeEEEEechhhhhhhHHHHHHHHHhhhcCCcccccce----e---EEEEeecCCChhcccceEE
Q 027444 143 KIVVAVDVDEVLGNFVSALNRFIADRYSLNHSVSEYH----V---YEFFKIWNCSRDEGKFLLL 199 (223)
Q Consensus 143 k~vVAVDlDEVLg~Fl~aLnKfhnd~Ygt~~sVSDfh----v---Y~F~KIWncSeEES~~~Vh 199 (223)
.+.|..|+|.||.++..++.++.+ .||.+. .++. . +.+.++++++.++..+...
T Consensus 2 ~k~viFDlDGTLiD~~~~~~~~~~-~~g~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 62 (197)
T PHA02597 2 KPTILTDVDGVLLSWQSGLPYFAQ-KYNIPT--DHILKMIQDERFRDPGELFGCDQELAKKLIE 62 (197)
T ss_pred CcEEEEecCCceEchhhccHHHHH-hcCCCH--HHHHHHHhHhhhcCHHHHhcccHHHHHHHhh
Confidence 357899999999999999988884 677653 2221 1 1223456666555555555
No 14
>PRK02922 glycogen synthesis protein GlgS; Provisional
Probab=36.89 E-value=17 Score=27.77 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=21.9
Q ss_pred EEechhhhhhhHHHHHHHHHhhhc
Q 027444 147 AVDVDEVLGNFVSALNRFIADRYS 170 (223)
Q Consensus 147 AVDlDEVLg~Fl~aLnKfhnd~Yg 170 (223)
.||+|+|-++.-..=-.|+.|+|.
T Consensus 28 ~Idvd~V~gnmsee~r~~F~eRla 51 (67)
T PRK02922 28 PVDIQAVTGNMDEEHRTWFCARYA 51 (67)
T ss_pred CccHHHHHhcCCHHHHHHHHHHHH
Confidence 389999999999999999999985
No 15
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=36.78 E-value=4.4 Score=28.36 Aligned_cols=13 Identities=31% Similarity=0.304 Sum_probs=9.6
Q ss_pred EEEEechhhhhhh
Q 027444 145 VVAVDVDEVLGNF 157 (223)
Q Consensus 145 vVAVDlDEVLg~F 157 (223)
+++.|+|.+|.+.
T Consensus 1 ~~vfD~D~tl~~~ 13 (139)
T cd01427 1 AVLFDLDGTLLDS 13 (139)
T ss_pred CeEEccCCceEcc
Confidence 3678999888554
No 16
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=30.88 E-value=30 Score=27.56 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=15.9
Q ss_pred hhhhHHHHHHHHHhhhcCC
Q 027444 154 LGNFVSALNRFIADRYSLN 172 (223)
Q Consensus 154 Lg~Fl~aLnKfhnd~Ygt~ 172 (223)
+-.|+.|+.+|.|++.|.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~ 145 (145)
T cd03672 127 VIPFIKPLKKWINRQKGKE 145 (145)
T ss_pred EhHHHHHHHHHHHHhhcCC
Confidence 3578999999999998863
No 17
>PF05722 Ustilago_mating: Ustilago B locus mating-type protein; InterPro: IPR008888 This domain consists of several Ustilago mating-type proteins. The b locus of the phytopathogenic fungus Ustilago maydis encodes a multiallelic recognition function that controls the ability of the fungus to form a dikaryon and complete the sexual stage of the life cycle. The b locus has at least 25 alleles and any combination of two different alleles, brought together by mating between haploid cells, allows the fungus to cause disease and undergo sexual development within the plant [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=25.44 E-value=34 Score=31.64 Aligned_cols=35 Identities=23% Similarity=0.627 Sum_probs=26.8
Q ss_pred EEEechhhhhhhH---------------HHHHHHHHhhhcCCcccccceeEEE
Q 027444 146 VAVDVDEVLGNFV---------------SALNRFIADRYSLNHSVSEYHVYEF 183 (223)
Q Consensus 146 VAVDlDEVLg~Fl---------------~aLnKfhnd~Ygt~~sVSDfhvY~F 183 (223)
.+..||+||..-| .+|..|+ +||..-+|-| |+|+.
T Consensus 37 l~~~lDdvL~dNLgrLT~aDK~eFEddW~SMiSWI--kYGVKEKvGd-WVYDL 86 (286)
T PF05722_consen 37 LSNNLDDVLSDNLGRLTPADKKEFEDDWNSMISWI--KYGVKEKVGD-WVYDL 86 (286)
T ss_pred ccccHHHHHHhhhccCChhhhhHHHHHHHHHHHHH--Hhhhhhhhhh-HHHHH
Confidence 4556777776433 5899999 9999999999 78764
No 18
>PF08971 GlgS: Glycogen synthesis protein; InterPro: IPR015065 Members of this protein are involved in glycogen synthesis in Enterobacteria. The structure of the polypeptide chain comprises a bundle of two parallel amphipathic helices, alpha-1 and alpha-3, and a short hydrophobic helix alpha-2 sandwiched between them []. ; GO: 0005978 glycogen biosynthetic process; PDB: 1RRZ_A.
Probab=22.79 E-value=45 Score=25.35 Aligned_cols=24 Identities=33% Similarity=0.685 Sum_probs=17.5
Q ss_pred EEechhhhhhhHHHHHHHHHhhhc
Q 027444 147 AVDVDEVLGNFVSALNRFIADRYS 170 (223)
Q Consensus 147 AVDlDEVLg~Fl~aLnKfhnd~Yg 170 (223)
-||+|+|-|+--..=-.|+.++|.
T Consensus 27 ~vd~~~I~gnM~ee~r~~F~~R~~ 50 (66)
T PF08971_consen 27 KVDVDAITGNMSEEQREWFCERYA 50 (66)
T ss_dssp ---HHHHHHH--TTHHHHHHHHHH
T ss_pred CCCHHHHhccCCHHHHHHHHHHHH
Confidence 389999999999999999999885
No 19
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=22.50 E-value=46 Score=22.94 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=14.3
Q ss_pred EechhhhhhhHHHHHHH
Q 027444 148 VDVDEVLGNFVSALNRF 164 (223)
Q Consensus 148 VDlDEVLg~Fl~aLnKf 164 (223)
-|||||+-+|..-|...
T Consensus 21 PDLdel~r~l~~kl~~~ 37 (42)
T PF12221_consen 21 PDLDELFRKLQDKLGGL 37 (42)
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 39999999999888764
No 20
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=21.73 E-value=50 Score=27.04 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=15.3
Q ss_pred CCCeEEEEechhhhhhhH
Q 027444 141 HGKIVVAVDVDEVLGNFV 158 (223)
Q Consensus 141 ~~k~vVAVDlDEVLg~Fl 158 (223)
..|+.+.+||||+|....
T Consensus 4 ~~kl~LVLDLDeTLihs~ 21 (156)
T TIGR02250 4 EKKLHLVLDLDQTLIHTT 21 (156)
T ss_pred CCceEEEEeCCCCccccc
Confidence 578999999999998753
No 21
>KOG3463 consensus Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=20.80 E-value=99 Score=25.57 Aligned_cols=37 Identities=24% Similarity=0.529 Sum_probs=31.4
Q ss_pred hhhhhhHHHHHHHHHhhhcCCccccc-ceeEEEEe-ecC
Q 027444 152 EVLGNFVSALNRFIADRYSLNHSVSE-YHVYEFFK-IWN 188 (223)
Q Consensus 152 EVLg~Fl~aLnKfhnd~Ygt~~sVSD-fhvY~F~K-IWn 188 (223)
.||-+|=++|++=.++.-...++... -..|.|++ +|=
T Consensus 36 ~VL~~FDKSi~~al~~~vk~kmsfkg~L~tYr~CDnVWT 74 (109)
T KOG3463|consen 36 KVLEQFDKSINEALNDKVKNKMSFKGKLDTYRFCDNVWT 74 (109)
T ss_pred HHHHHHHHHHHHHHHHhcccceeeeeccceeeeccceee
Confidence 48999999999999999888877766 67899996 883
Done!