BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027449
         (223 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
           Ribosomal Peptide Synthetase
 pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
           Ribosomal Peptide Synthetase
          Length = 562

 Score = 29.3 bits (64), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 29/134 (21%)

Query: 99  QEFGIKE--LLPAYLDPN-LKPQDLVTGVSFASGGAGYDPLTSKVASALSMSDQLDLFKK 155
           +E G+    ++P+ LD   L P+D    V    GG    P T ++ S+      ++++  
Sbjct: 269 RELGVTHAGIVPSLLDQTGLVPEDAPHLVYLGVGGEKXTPRTQQIWSSSDRVALVNVYGP 328

Query: 156 ALETIKATAGE---------------EATANILSKGL----------FMVVSGSDDIANT 190
              TI  +AG                ++ A++L+ G            +V+ GS  +AN 
Sbjct: 329 TEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGXAGELVIEGSL-VANG 387

Query: 191 YLSTPFRRGQYDIN 204
           YL+ P  +G  DIN
Sbjct: 388 YLNRPDAKGFCDIN 401


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.134    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,647,073
Number of Sequences: 62578
Number of extensions: 211187
Number of successful extensions: 421
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 421
Number of HSP's gapped (non-prelim): 2
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)