Query 027450
Match_columns 223
No_of_seqs 138 out of 579
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 10:06:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027450.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027450hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1664 Vacuolar H+-ATPase V1 100.0 3.4E-53 7.4E-58 342.2 26.6 211 1-222 1-211 (220)
2 PRK03963 V-type ATP synthase s 100.0 2.5E-33 5.5E-38 232.5 25.7 188 10-223 4-195 (198)
3 PF01991 vATP-synt_E: ATP synt 100.0 4.1E-33 8.9E-38 230.2 15.8 195 16-222 1-195 (198)
4 PRK02292 V-type ATP synthase s 100.0 5.6E-30 1.2E-34 210.9 22.9 177 10-222 3-183 (188)
5 PRK01194 V-type ATP synthase s 100.0 2.4E-29 5.1E-34 206.7 22.4 170 10-221 3-176 (185)
6 COG1390 NtpE Archaeal/vacuolar 100.0 9.5E-28 2.1E-32 198.0 24.2 186 10-222 4-189 (194)
7 PRK01558 V-type ATP synthase s 99.9 1.5E-23 3.3E-28 174.1 25.2 192 3-222 2-193 (198)
8 PRK01005 V-type ATP synthase s 99.9 3.7E-19 8.1E-24 148.3 23.2 187 4-222 8-202 (207)
9 TIGR03825 FliH_bacil flagellar 99.6 2.5E-13 5.4E-18 117.0 23.3 185 10-220 38-248 (255)
10 PRK09098 type III secretion sy 99.6 2.4E-12 5.2E-17 109.4 23.0 181 8-218 35-221 (233)
11 PRK06937 type III secretion sy 99.6 1.7E-12 3.6E-17 108.3 21.6 169 14-218 32-201 (204)
12 PRK06669 fliH flagellar assemb 99.5 2.2E-11 4.7E-16 106.3 24.8 113 84-219 164-277 (281)
13 PRK06328 type III secretion sy 99.5 2.4E-11 5.3E-16 102.7 23.3 170 14-217 31-201 (223)
14 TIGR02499 HrpE_YscL_not type I 99.3 1.3E-09 2.7E-14 87.6 20.1 149 13-200 14-164 (166)
15 COG1317 FliH Flagellar biosynt 99.3 5.2E-09 1.1E-13 89.1 23.9 188 3-221 39-229 (234)
16 TIGR03321 alt_F1F0_F0_B altern 99.1 1.5E-07 3.2E-12 80.8 23.6 172 11-216 59-245 (246)
17 PF06188 HrpE: HrpE/YscL/FliH 99.0 2.4E-07 5.2E-12 76.7 20.5 153 12-202 30-182 (191)
18 PRK13386 fliH flagellar assemb 98.9 1.4E-07 2.9E-12 80.6 17.9 103 85-216 121-225 (236)
19 PRK05687 fliH flagellar assemb 98.9 1.4E-06 3E-11 74.7 22.4 108 85-219 134-243 (246)
20 PF02108 FliH: Flagellar assem 98.8 4E-07 8.7E-12 69.6 15.6 101 84-211 25-127 (128)
21 PF06635 NolV: Nodulation prot 98.7 9.1E-06 2E-10 67.3 19.6 168 15-219 33-201 (207)
22 PRK06032 fliH flagellar assemb 98.6 1.7E-05 3.7E-10 66.0 20.8 108 85-215 86-195 (199)
23 PRK08475 F0F1 ATP synthase sub 98.3 1.9E-05 4.2E-10 63.9 13.3 91 10-116 75-165 (167)
24 PRK14474 F0F1 ATP synthase sub 98.3 0.00063 1.4E-08 58.6 22.6 166 14-215 62-244 (250)
25 PRK13436 F0F1 ATP synthase sub 97.3 0.0031 6.7E-08 51.6 10.7 32 184-217 147-178 (179)
26 PRK01005 V-type ATP synthase s 97.3 0.079 1.7E-06 44.4 20.6 59 6-68 21-79 (207)
27 PRK08404 V-type ATP synthase s 97.0 0.053 1.2E-06 40.4 13.3 69 10-78 11-79 (103)
28 PRK13430 F0F1 ATP synthase sub 96.9 0.021 4.6E-07 49.8 12.4 31 184-216 239-269 (271)
29 PRK03963 V-type ATP synthase s 96.9 0.095 2E-06 43.2 15.8 129 4-135 9-153 (198)
30 PRK07352 F0F1 ATP synthase sub 96.9 0.1 2.2E-06 42.3 15.5 96 13-120 75-170 (174)
31 PRK06231 F0F1 ATP synthase sub 96.9 0.1 2.2E-06 43.6 15.5 99 10-120 101-199 (205)
32 PRK02292 V-type ATP synthase s 96.8 0.085 1.8E-06 43.2 14.4 56 4-59 8-63 (188)
33 PRK13428 F0F1 ATP synthase sub 96.8 0.022 4.8E-07 53.0 12.1 31 184-216 413-443 (445)
34 CHL00019 atpF ATP synthase CF0 96.8 0.15 3.2E-06 41.8 15.7 98 12-121 79-176 (184)
35 PRK01558 V-type ATP synthase s 96.7 0.26 5.6E-06 40.9 18.6 57 5-65 15-71 (198)
36 PRK14473 F0F1 ATP synthase sub 96.7 0.17 3.7E-06 40.5 15.4 99 10-120 61-159 (164)
37 PRK13434 F0F1 ATP synthase sub 96.7 0.029 6.2E-07 46.0 11.1 32 184-217 143-174 (184)
38 PRK01194 V-type ATP synthase s 96.6 0.096 2.1E-06 43.1 13.7 63 4-66 8-70 (185)
39 PRK13461 F0F1 ATP synthase sub 96.6 0.22 4.7E-06 39.7 15.5 97 11-119 59-155 (159)
40 PRK13460 F0F1 ATP synthase sub 96.6 0.24 5.2E-06 40.1 15.5 97 12-120 71-167 (173)
41 PRK05759 F0F1 ATP synthase sub 96.4 0.33 7.1E-06 38.3 15.4 97 10-118 57-153 (156)
42 PRK14472 F0F1 ATP synthase sub 96.4 0.36 7.7E-06 39.1 15.6 95 13-119 74-168 (175)
43 PRK14471 F0F1 ATP synthase sub 96.3 0.42 9.1E-06 38.2 16.0 100 10-120 61-160 (164)
44 COG2811 NtpF Archaeal/vacuolar 96.3 0.31 6.7E-06 36.6 13.5 44 12-55 28-71 (108)
45 PF01991 vATP-synt_E: ATP synt 96.3 0.3 6.6E-06 39.7 14.7 26 28-57 2-27 (198)
46 PRK09173 F0F1 ATP synthase sub 96.2 0.47 1E-05 37.7 15.9 96 14-121 59-154 (159)
47 PRK13453 F0F1 ATP synthase sub 96.0 0.62 1.3E-05 37.7 15.7 43 13-55 74-116 (173)
48 PRK13428 F0F1 ATP synthase sub 96.0 0.48 1E-05 44.2 16.2 96 14-120 58-153 (445)
49 PRK14475 F0F1 ATP synthase sub 95.9 0.69 1.5E-05 37.2 16.0 96 13-121 66-162 (167)
50 COG0712 AtpH F0F1-type ATP syn 95.9 0.063 1.4E-06 43.9 8.8 111 84-216 58-177 (178)
51 TIGR01144 ATP_synt_b ATP synth 95.9 0.61 1.3E-05 36.4 15.3 43 10-52 48-90 (147)
52 TIGR02926 AhaH ATP synthase ar 95.9 0.36 7.7E-06 34.5 11.6 36 11-46 8-43 (85)
53 PRK13441 F0F1 ATP synthase sub 95.7 0.18 3.8E-06 41.1 10.7 32 184-217 146-177 (180)
54 PRK06568 F0F1 ATP synthase sub 95.7 0.74 1.6E-05 36.8 13.9 28 10-37 57-84 (154)
55 PRK09098 type III secretion sy 95.7 0.95 2.1E-05 38.6 15.4 51 5-55 43-93 (233)
56 PRK13455 F0F1 ATP synthase sub 95.6 1 2.2E-05 36.8 15.9 94 16-121 86-179 (184)
57 PRK15322 invasion protein OrgB 95.5 1.3 2.7E-05 37.0 20.3 106 12-136 12-119 (210)
58 COG0711 AtpF F0F1-type ATP syn 95.3 1.2 2.5E-05 35.8 15.4 49 11-63 60-108 (161)
59 TIGR02926 AhaH ATP synthase ar 95.2 0.72 1.6E-05 32.9 12.7 44 19-66 5-48 (85)
60 PRK15354 type III secretion sy 95.2 1.6 3.5E-05 36.5 20.1 121 14-146 43-171 (224)
61 COG2811 NtpF Archaeal/vacuolar 95.2 0.96 2.1E-05 33.9 15.2 41 14-58 19-59 (108)
62 PRK09174 F0F1 ATP synthase sub 95.1 1.1 2.3E-05 37.5 13.6 34 13-46 109-142 (204)
63 COG1390 NtpE Archaeal/vacuolar 95.0 1.5 3.3E-05 36.3 14.2 116 20-154 3-118 (194)
64 PRK07353 F0F1 ATP synthase sub 95.0 0.72 1.6E-05 35.7 11.6 42 12-53 60-101 (140)
65 PRK08475 F0F1 ATP synthase sub 94.9 0.93 2E-05 36.5 12.3 36 26-65 80-115 (167)
66 CHL00118 atpG ATP synthase CF0 94.8 1.5 3.2E-05 34.9 13.2 46 10-55 75-120 (156)
67 PRK06231 F0F1 ATP synthase sub 94.8 2.1 4.5E-05 35.8 14.8 23 42-64 118-140 (205)
68 PRK09173 F0F1 ATP synthase sub 94.7 1.7 3.7E-05 34.5 13.9 37 15-51 71-107 (159)
69 TIGR01145 ATP_synt_delta ATP s 94.7 0.48 1E-05 38.1 10.3 30 184-215 142-171 (172)
70 PRK14473 F0F1 ATP synthase sub 94.6 1.8 4E-05 34.5 14.8 23 42-64 78-100 (164)
71 PRK00106 hypothetical protein; 94.5 3 6.5E-05 39.9 16.4 35 13-47 43-77 (535)
72 PRK08476 F0F1 ATP synthase sub 94.4 1.1 2.4E-05 35.0 11.3 44 12-55 62-105 (141)
73 PF03179 V-ATPase_G: Vacuolar 94.3 1.6 3.4E-05 32.3 11.7 20 86-105 65-84 (105)
74 PRK08404 V-type ATP synthase s 94.3 1.6 3.5E-05 32.4 13.7 70 19-96 9-78 (103)
75 PRK05758 F0F1 ATP synthase sub 94.2 0.6 1.3E-05 37.7 9.7 31 184-216 145-175 (177)
76 PRK13454 F0F1 ATP synthase sub 94.1 1.3 2.8E-05 36.2 11.6 40 10-49 84-123 (181)
77 CHL00019 atpF ATP synthase CF0 93.9 2.9 6.3E-05 34.1 14.2 22 42-63 94-115 (184)
78 PRK07352 F0F1 ATP synthase sub 93.6 3.2 7E-05 33.4 14.8 22 42-63 89-110 (174)
79 PRK14475 F0F1 ATP synthase sub 93.5 3.3 7.1E-05 33.3 14.2 20 42-61 80-99 (167)
80 PRK13460 F0F1 ATP synthase sub 93.5 3.4 7.3E-05 33.3 14.6 22 42-63 86-107 (173)
81 PF00430 ATP-synt_B: ATP synth 93.5 0.97 2.1E-05 34.3 9.3 41 12-52 54-94 (132)
82 CHL00119 atpD ATP synthase CF1 93.3 1.1 2.4E-05 36.6 9.9 31 184-216 149-179 (184)
83 PRK13453 F0F1 ATP synthase sub 93.3 3.6 7.9E-05 33.2 14.8 25 41-65 87-111 (173)
84 PRK06669 fliH flagellar assemb 93.3 5.1 0.00011 34.9 16.6 34 187-220 234-274 (281)
85 PRK13461 F0F1 ATP synthase sub 93.3 3.4 7.3E-05 32.8 14.5 24 42-65 75-98 (159)
86 PF03179 V-ATPase_G: Vacuolar 93.2 2.5 5.5E-05 31.1 13.2 44 10-57 12-55 (105)
87 PRK14472 F0F1 ATP synthase sub 93.1 3.9 8.6E-05 33.0 14.3 20 42-61 88-107 (175)
88 PRK13429 F0F1 ATP synthase sub 93.0 2.3 5E-05 34.4 11.3 30 185-216 148-177 (181)
89 PRK08474 F0F1 ATP synthase sub 92.6 0.68 1.5E-05 37.5 7.7 29 187-219 143-171 (176)
90 PF06188 HrpE: HrpE/YscL/FliH 92.2 5.7 0.00012 32.7 14.3 29 21-53 28-56 (191)
91 PF00213 OSCP: ATP synthase de 92.0 0.046 9.9E-07 44.0 0.1 32 182-215 140-171 (172)
92 TIGR03319 YmdA_YtgF conserved 92.0 12 0.00025 35.8 16.5 34 14-47 23-56 (514)
93 PRK00106 hypothetical protein; 91.7 13 0.00028 35.7 17.1 43 80-122 139-183 (535)
94 PRK12704 phosphodiesterase; Pr 91.5 13 0.00029 35.4 16.2 28 15-42 30-57 (520)
95 TIGR03825 FliH_bacil flagellar 91.5 8.4 0.00018 33.1 19.2 50 86-136 158-213 (255)
96 TIGR03321 alt_F1F0_F0_B altern 91.0 9.2 0.0002 32.6 14.4 15 133-147 186-200 (246)
97 PRK12704 phosphodiesterase; Pr 90.9 15 0.00033 35.0 17.1 42 80-121 124-167 (520)
98 PRK13455 F0F1 ATP synthase sub 90.7 8 0.00017 31.4 14.3 9 140-148 170-178 (184)
99 PRK14474 F0F1 ATP synthase sub 90.1 11 0.00025 32.3 15.2 25 39-63 72-96 (250)
100 TIGR01144 ATP_synt_b ATP synth 90.1 7.5 0.00016 30.2 14.3 41 26-70 53-93 (147)
101 PRK05759 F0F1 ATP synthase sub 90.0 7.9 0.00017 30.3 14.3 22 42-63 74-95 (156)
102 PRK14471 F0F1 ATP synthase sub 89.9 8.5 0.00018 30.6 14.5 22 42-63 78-99 (164)
103 PF00430 ATP-synt_B: ATP synth 88.8 6.9 0.00015 29.5 9.8 39 23-65 54-92 (132)
104 PF12072 DUF3552: Domain of un 88.5 13 0.00028 30.8 16.3 27 16-42 27-53 (201)
105 PRK09174 F0F1 ATP synthase sub 88.3 14 0.0003 30.9 14.3 17 42-58 123-139 (204)
106 KOG1662 Mitochondrial F1F0-ATP 88.2 2.2 4.7E-05 35.5 6.8 29 184-214 176-204 (210)
107 PRK07353 F0F1 ATP synthase sub 88.2 10 0.00022 29.2 13.3 24 42-65 75-98 (140)
108 CHL00118 atpG ATP synthase CF0 85.7 16 0.00034 28.9 13.4 22 42-63 92-113 (156)
109 PRK08476 F0F1 ATP synthase sub 83.8 19 0.0004 28.1 13.3 16 22-37 61-76 (141)
110 COG0711 AtpF F0F1-type ATP syn 82.2 24 0.00051 28.2 15.2 24 42-65 76-99 (161)
111 PRK10780 periplasmic chaperone 81.7 25 0.00054 28.0 11.1 53 81-147 110-162 (165)
112 PRK06569 F0F1 ATP synthase sub 80.0 29 0.00063 27.8 13.1 17 109-125 125-141 (155)
113 PRK06568 F0F1 ATP synthase sub 79.3 30 0.00066 27.6 13.1 21 42-62 74-94 (154)
114 PRK13454 F0F1 ATP synthase sub 79.3 32 0.0007 27.9 15.1 19 42-60 101-119 (181)
115 TIGR03319 YmdA_YtgF conserved 74.9 80 0.0017 30.2 17.1 24 13-36 33-56 (514)
116 PRK12705 hypothetical protein; 73.6 86 0.0019 29.9 16.0 28 10-37 31-58 (508)
117 PRK10930 FtsH protease regulat 64.9 1.2E+02 0.0026 28.2 12.7 18 20-37 267-284 (419)
118 TIGR02499 HrpE_YscL_not type I 60.9 78 0.0017 24.7 12.3 29 21-53 11-39 (166)
119 PF15513 DUF4651: Domain of un 54.8 31 0.00066 23.3 4.2 13 185-199 35-47 (62)
120 PF11657 Activator-TraM: Trans 53.9 1.1E+02 0.0024 24.2 13.3 53 3-55 22-74 (144)
121 TIGR01933 hflK HflK protein. H 52.5 1.4E+02 0.0031 25.2 10.1 29 4-37 149-177 (261)
122 TIGR01932 hflC HflC protein. H 49.9 1.8E+02 0.004 25.7 11.8 19 17-35 228-246 (317)
123 PRK06937 type III secretion sy 45.3 1.7E+02 0.0037 24.0 12.2 25 21-49 28-52 (204)
124 PF08112 ATP-synt_E_2: ATP syn 42.9 93 0.002 20.2 7.4 39 9-51 8-46 (56)
125 KOG0994 Extracellular matrix g 42.7 2.9E+02 0.0064 29.5 10.6 49 103-152 1506-1554(1758)
126 PRK06328 type III secretion sy 42.5 2.1E+02 0.0045 24.1 18.1 115 3-123 31-155 (223)
127 PF07095 IgaA: Intracellular g 37.6 72 0.0016 31.5 5.4 84 96-203 506-590 (705)
128 cd03404 Band_7_HflK Band_7_Hfl 37.2 2E+02 0.0043 24.4 7.8 8 5-12 177-184 (266)
129 PF12072 DUF3552: Domain of un 37.1 2.4E+02 0.0051 23.2 17.8 28 10-37 32-59 (201)
130 PF05103 DivIVA: DivIVA protei 35.9 12 0.00026 28.2 0.0 23 15-37 77-99 (131)
131 KOG2880 SMAD6 interacting prot 35.5 3.5E+02 0.0076 24.8 9.0 44 9-52 81-124 (424)
132 PF07227 DUF1423: Protein of u 34.2 4E+02 0.0087 25.0 9.7 26 32-58 376-401 (446)
133 PRK12705 hypothetical protein; 32.3 4.6E+02 0.01 25.1 17.8 39 5-43 41-79 (508)
134 KOG0066 eIF2-interacting prote 31.8 88 0.0019 29.8 4.8 17 185-201 749-765 (807)
135 PF07960 CBP4: CBP4; InterPro 30.0 40 0.00087 26.1 2.0 46 109-154 4-49 (128)
136 PRK01379 cyaY frataxin-like pr 29.3 1.6E+02 0.0034 21.8 5.1 17 109-125 5-21 (103)
137 KOG1029 Endocytic adaptor prot 28.9 6.5E+02 0.014 25.8 12.5 28 8-35 327-354 (1118)
138 PF03938 OmpH: Outer membrane 28.8 2.7E+02 0.0059 21.4 10.3 16 131-147 140-155 (158)
139 PHA03065 Hypothetical protein; 27.6 5.2E+02 0.011 24.2 12.9 80 82-168 113-197 (438)
140 KOG4702 Uncharacterized conser 27.3 1.8E+02 0.0039 20.1 4.6 31 2-32 43-74 (77)
141 PRK15354 type III secretion sy 27.0 3.9E+02 0.0084 22.6 13.5 42 10-55 50-91 (224)
142 PHA03081 putative metalloprote 26.9 5.8E+02 0.013 24.6 9.4 80 113-212 150-233 (595)
143 COG3882 FkbH Predicted enzyme 26.9 99 0.0021 29.6 4.3 37 185-221 232-268 (574)
144 PF11657 Activator-TraM: Trans 26.4 3.2E+02 0.007 21.5 12.6 30 6-35 51-80 (144)
145 PHA02571 a-gt.4 hypothetical p 25.7 2.9E+02 0.0063 20.7 10.4 35 3-37 13-47 (109)
146 PF09561 RE_HpaII: HpaII restr 24.4 60 0.0013 29.5 2.4 21 185-205 290-310 (355)
147 PF03927 NapD: NapD protein; 24.3 2.5E+02 0.0054 19.5 5.1 18 129-146 7-24 (79)
148 PF14164 YqzH: YqzH-like prote 24.1 1.3E+02 0.0028 20.4 3.4 36 111-146 3-38 (64)
149 PF07549 Sec_GG: SecD/SecF GG 23.4 72 0.0016 18.0 1.8 17 184-205 13-29 (31)
150 PF04716 ETC_C1_NDUFA5: ETC co 20.8 2.6E+02 0.0056 18.3 6.3 38 89-127 7-44 (57)
151 PF03410 Peptidase_M44: Protei 20.7 7.7E+02 0.017 23.8 9.3 80 113-212 150-233 (590)
152 PF06903 VirK: VirK protein; 20.5 71 0.0015 23.6 1.7 19 184-204 38-56 (100)
153 KOG1772 Vacuolar H+-ATPase V1 20.4 3.8E+02 0.0082 20.1 12.9 16 20-35 13-28 (108)
No 1
>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]
Probab=100.00 E-value=3.4e-53 Score=342.19 Aligned_cols=211 Identities=55% Similarity=0.821 Sum_probs=207.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK 80 (223)
Q Consensus 1 m~~~~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~ 80 (223)
|||+||++||++|++||++||++||+||...|++||++||.+|+++++.+|++.|++++++++++++++.|..+|++|++
T Consensus 1 lsD~dv~kqi~~M~aFI~qEA~EKA~EI~~kAeeEfnIEK~rlV~~q~~kI~~~yekKeKqve~~kkI~~S~~lN~~RlK 80 (220)
T KOG1664|consen 1 LSDADVSKQIKHMVAFIRQEAEEKAKEIDAKAEEEFNIEKGRLVQEQRLKIMQYYEKKEKQVELQKKIAKSNLLNQSRLK 80 (220)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCC
Q 027450 81 VLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH 160 (223)
Q Consensus 81 ~L~ar~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~ 160 (223)
+|++|+++|+.+|++|+.+|...+.+++.|+.+|.+||.||+..+.+|.++|+|++.|..+|+++++++...|....|.+
T Consensus 81 vL~ar~d~i~~i~~ea~k~Ls~i~~~~~~Y~~lL~~LivQ~Ll~L~Ep~~Ivrcre~D~~lVe~~~~~a~~~y~~ka~~~ 160 (220)
T KOG1664|consen 81 VLRARDDIIDDILDEAKKRLSKVSKDTDRYKKLLKDLIVQGLLQLLEPEVIVRCREKDLKLVEAALPKAIEEYKEKAGVG 160 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhCCCeeEEeehhhhhHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999995
Q ss_pred CCeEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchhhhc
Q 027450 161 PPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFH 222 (223)
Q Consensus 161 ~~~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir~ 222 (223)
.++.+|++.|||+ +|.|||+|.|.||+|.|+|||++||+.++++++|+||+
T Consensus 161 -~e~~id~~~fL~~----------~~~GGVvl~s~dgkI~v~NTLesRLeli~~q~lPeIR~ 211 (220)
T KOG1664|consen 161 -VEVQIDKKDFLPP----------DVAGGVVLYSRDGKIKVSNTLESRLELIAEQKLPEIRK 211 (220)
T ss_pred -ceeeechhccCCc----------cccCCeEEEcCCCceEecCcHHHHHHHHHHHhhHHHHH
Confidence 8999999999986 89999999999999999999999999999999999985
No 2
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=100.00 E-value=2.5e-33 Score=232.46 Aligned_cols=188 Identities=26% Similarity=0.394 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQE----YERKEKQVEIRKKIEYSMQLNASRIKVLQAQ 85 (223)
Q Consensus 10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~----~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar 85 (223)
|+++++.|+++|+.++++|..+|+.+++ .++++...+.... .++...+++..+++.+|...+..|+.+|.+|
T Consensus 4 l~~i~~~il~~A~~ea~~il~~A~~~a~----~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar 79 (198)
T PRK03963 4 AELIIQEINREAEQKIEYILEEAQKEAE----KIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQ 79 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999998 6666555555443 3444556777788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEE
Q 027450 86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEII 165 (223)
Q Consensus 86 ~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~~i~ 165 (223)
+++++++|..|+++|.+++.+ .|+.||.+||.+|+..+++++++|+|+|.|..++.++++.+...+ | ++++.
T Consensus 80 ~el~~~v~~~a~~~l~~~~~~--~Y~~~l~~li~~a~~~l~~~~i~i~~~~~D~~~~~~~~~~~~~~~----~--~~~i~ 151 (198)
T PRK03963 80 EELISEVLEAVRERLAELPED--EYFETLKALTKEAVEELGEDKVVVRSNERTLKLIDSRLEEIRDEL----G--DVEIE 151 (198)
T ss_pred HHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHhCCCcEEEEEccccHHHHHHHHHHHHHHh----C--CeEEE
Confidence 999999999999999999886 799999999999999999899999999999999999887765443 3 24555
Q ss_pred eccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchhhhcC
Q 027450 166 VDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFHF 223 (223)
Q Consensus 166 id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir~~ 223 (223)
++. | ++|.|||||+|+||+|+|||||++||+.+|++++|.|+++
T Consensus 152 ~~~-------~-------~~~~GGvil~s~~g~i~~dnT~e~~l~~~~~~~~~~i~~~ 195 (198)
T PRK03963 152 LGE-------P-------IETIGGVIVETKDGTIRVDNTFEARMERLESELRAKIAKA 195 (198)
T ss_pred ECC-------C-------CCccceEEEEeCCCCEEEeCcHHHHHHHHHHHhHHHHHHH
Confidence 542 1 3799999999999999999999999999999999999863
No 3
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=100.00 E-value=4.1e-33 Score=230.18 Aligned_cols=195 Identities=32% Similarity=0.441 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA 95 (223)
Q Consensus 16 ~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v~~~ 95 (223)
+|.++|+.+|++|..+|+++++..+..+.++....+...+++..++++..+.+..|...+..|..+|.+|+++++++|++
T Consensus 1 ~I~~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~~~ 80 (198)
T PF01991_consen 1 EIEEEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVFEE 80 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999997777777777777777777788889999999999999999999999999999999999
Q ss_pred HHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCCCCC
Q 027450 96 ASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPG 175 (223)
Q Consensus 96 a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~~i~id~~~~L~~~ 175 (223)
++++|.+++.+++.|..+|.+||.+++..+++++++|+|+|+|.++++.+++.+...|+...|..++.+..+. .+|
T Consensus 81 ~~~~L~~~~~~~~~Y~~~L~~li~~~~~~~~~~~~~v~~~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~--- 156 (198)
T PF01991_consen 81 VKEKLKSFSKDPDDYKKFLKKLIEEAAEKLGEGEVIVYVNKKDLELVKEILKRIKKELKSKAGKDSVEVSVDS-DYL--- 156 (198)
T ss_dssp HHHHHHCTTCCC-THHHHHHHHHHHHHHCCTTSCEEEEECCHHHHCCHCCHCCCCCCHCCCSSTTTEEEEE-T-------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCceEEecccchHHHHHHHHHHHHHHHHHHhCCCcceeecCc-ccc---
Confidence 9999999999865799999999999999999899999999999999999877666667655444223444442 222
Q ss_pred CCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchhhhc
Q 027450 176 PGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFH 222 (223)
Q Consensus 176 ~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir~ 222 (223)
++++|||+++++||+|+|||||++||+.+++.+.|.|++
T Consensus 157 --------~~~~GG~il~~~dg~i~vd~T~e~~l~~~~~~~~~~i~~ 195 (198)
T PF01991_consen 157 --------IDIIGGFILESEDGKIRVDNTFESRLERLKEEIRPEIAK 195 (198)
T ss_dssp --------BSSSSEEEEECSSSSCEEEEEHHHHHHHCHHHHHHHHHH
T ss_pred --------CCccceEEEEECCCCEEEECCHHHHHHHHHHHhHHHHHH
Confidence 279999999999999999999999999999999999975
No 4
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=99.97 E-value=5.6e-30 Score=210.92 Aligned_cols=177 Identities=28% Similarity=0.450 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK----EKQVEIRKKIEYSMQLNASRIKVLQAQ 85 (223)
Q Consensus 10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~----~~~~e~~~~~~~S~~~~~~R~~~L~ar 85 (223)
|+++++.|+++|+.++++|+.+|+++++ .|+.++..++.+-.... .+++....++..|...+..|..+|.+|
T Consensus 3 l~~i~~~I~~~a~~e~~~I~~ea~~~~~----~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r 78 (188)
T PRK02292 3 LETVVEDIRDEARARASEIRAEADEEAE----EIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNAR 78 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999988 88888877755444333 334445566778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEE
Q 027450 86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEII 165 (223)
Q Consensus 86 ~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~~i~ 165 (223)
+++++++|..|+++|.+++.+ .|..||.+||.++ ++++++|+|+|.|..+++.++.. +++ ++
T Consensus 79 ~~~l~~v~~~a~~kL~~~~~~--~y~~~l~~li~~~----~~~~~~i~~~~~D~~~~~~~~~~----~~~------~~-- 140 (188)
T PRK02292 79 KEVLEDVRNQVEDEIASLDGD--KREELTKSLLDAA----DADGVRVYSRKDDEDLVKSLLSD----YDG------LE-- 140 (188)
T ss_pred HHHHHHHHHHHHHHHHhcchh--hHHHHHHHHHHhc----CCCCeEEEEccccHHHHHHHHHh----ccc------Ce--
Confidence 999999999999999999986 7999999999998 45788999999999999987753 211 12
Q ss_pred eccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchhhhc
Q 027450 166 VDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFH 222 (223)
Q Consensus 166 id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir~ 222 (223)
+. ++ ++|.|||||+|++|+|+|||||++||+.+|++++|.|++
T Consensus 141 ~~------~~--------~~~~GGvil~~~~g~I~~dnT~~~rl~~~~~~~~~~i~~ 183 (188)
T PRK02292 141 YA------GN--------IDCLGGVVVESEDGRVRVNNTFDSILEDVWEDNLKEISD 183 (188)
T ss_pred eC------CC--------CCCCceEEEEecCCceEEeccHHHHHHHHHHHhhHHHHH
Confidence 21 11 378999999999999999999999999999999999986
No 5
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=99.97 E-value=2.4e-29 Score=206.73 Aligned_cols=170 Identities=18% Similarity=0.287 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER----KEKQVEIRKKIEYSMQLNASRIKVLQAQ 85 (223)
Q Consensus 10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~----~~~~~e~~~~~~~S~~~~~~R~~~L~ar 85 (223)
|+++++.|+++|+.+|++|..+|+.+++ .|+.++..++.+..+. ...++...+++.+|.+...+|+.+|.+|
T Consensus 3 le~i~~~I~~ea~~~a~~I~~eA~~~ae----ei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~ar 78 (185)
T PRK01194 3 LEDVIKDIEKSREEKKKEINDEYSKRIE----KLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKR 78 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7899999999999999999999999998 8888887766554433 3456677788888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEE
Q 027450 86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEII 165 (223)
Q Consensus 86 ~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~~i~ 165 (223)
+++|+++|+.|.++|.+++.++ .|+++|.+||.+|+..+ +++++|+|++.|..++++. .++
T Consensus 79 ee~I~~v~~~a~e~L~~l~~~~-~Y~~~L~~LI~~a~~~l-~~~~~v~~~~~D~~~i~~~-----------------~l~ 139 (185)
T PRK01194 79 REILKDYLDIAYEHLMNITKSK-EYDSILNKMIEVAIKTL-GEDCIIKVSESDKKKINNA-----------------KIK 139 (185)
T ss_pred HHHHHHHHHHHHHHHHcccCCc-hHHHHHHHHHHHHHHhc-CCCeEEEEcHHhHHHHHhC-----------------cee
Confidence 9999999999999999999766 89999999999999985 5789999999999988751 233
Q ss_pred eccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchhhh
Q 027450 166 VDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVF 221 (223)
Q Consensus 166 id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir 221 (223)
+. + .+|.|||||+|.||+|.+||||++.++ .++|.||
T Consensus 140 ~~-----~----------~~~~GGvil~s~dG~I~ld~~l~~~~~----~~~~~iR 176 (185)
T PRK01194 140 FA-----D----------IDPYGGILAYSRDGKRELDLRLSSIFE----NILEDLK 176 (185)
T ss_pred eC-----C----------ccccccEEEEeCCCcEEehhhHHHHHH----HhHHHHH
Confidence 22 1 379999999999999999999999665 5556665
No 6
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=99.96 E-value=9.5e-28 Score=197.96 Aligned_cols=186 Identities=30% Similarity=0.448 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV 89 (223)
Q Consensus 10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i 89 (223)
++.++++|.++|+++|++|...|.++++..+.+........++..+.+..++++..+++++|.+.+.+|..+|+++++++
T Consensus 4 ~e~~i~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~l 83 (194)
T COG1390 4 LEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKEEIL 83 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999996666666666666666667778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEeccc
Q 027450 90 SNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHH 169 (223)
Q Consensus 90 ~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~~i~id~~ 169 (223)
+.+|+.+.++|.+++.+| .|.. |..|+.+++..+.+++++|++++.|.+++.+++.+. + ....+
T Consensus 84 ~~~~~~~~e~L~~i~~~~-~~~~-l~~ll~~~~~~~~~~~~iV~~~e~d~~~v~~~~~~~--------~---~~~~~--- 147 (194)
T COG1390 84 ESVFEAVEEKLRNIASDP-EYES-LQELLIEALEKLLGGELVVYLNEKDKALVEQILREL--------K---IGVEL--- 147 (194)
T ss_pred HHHHHHHHHHHHcCcCCc-chHH-HHHHHHHHHHhcCCCCeEEEeCcccHHHHHHHHhhc--------c---cchhc---
Confidence 999999999999999997 5665 999999999999999999999999999988776531 0 11111
Q ss_pred cCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchhhhc
Q 027450 170 IYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFH 222 (223)
Q Consensus 170 ~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir~ 222 (223)
+++ ++|.|||++++.||++.+||||++||+..++.+.|.|+.
T Consensus 148 ---~~~--------~d~~GGvvv~~~dG~i~~dnt~~sil~~~~e~~~~~i~~ 189 (194)
T COG1390 148 ---GEG--------IDIIGGVVVESRDGKIRLDNTFESILERVLEELLPEISE 189 (194)
T ss_pred ---ccc--------CCCcceEEEEeCCCceeecCcHHHHHHHHHHHHHHHHHH
Confidence 211 479999999999999999999999999999999999974
No 7
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=99.93 E-value=1.5e-23 Score=174.09 Aligned_cols=192 Identities=21% Similarity=0.253 Sum_probs=156.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVL 82 (223)
Q Consensus 3 ~~~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L 82 (223)
+++++.=+++|.+.|.++|+.+|++|.++|+++|+ .|+++++.+...-..+..++++..+++..|+.....|..+|
T Consensus 2 ~~~~~~l~dki~~~~~eeA~~eA~~Ii~eA~~eAe----~Ii~eA~~eAe~i~~kAe~ea~~~~~~~~saa~l~~r~~ll 77 (198)
T PRK01558 2 QFEVKDLINKIKKDGLEEAERLANEIILEAKEEAE----EIIAKAEEEAKELKAKAEKEANDYKRHALEASRQAGRDLLI 77 (198)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888889999999999999999999999999999 99999998887777777788888788888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCC
Q 027450 83 QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP 162 (223)
Q Consensus 83 ~ar~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~ 162 (223)
.+++.+++.+...+.+.+.+.. +++.|..++.+|+..++ +++++.|+++|+|...+++.+.. .++...|.
T Consensus 78 ~~k~~i~~~~~~~~~~~~~~~~-~~e~~~~li~~ll~~~~---~~~~~~I~~~~~D~~~l~~~~~~---~~~~~l~~--- 147 (198)
T PRK01558 78 SFEKSIKSLFKAALKDEVAEVY-DSNFLRELIIRVVDSWV---KGDKLEIILNESDLSELESILRA---ALGNKLKK--- 147 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhc---CCCCeeEEECHHHHHHhHHHHHH---HHHHHhcC---
Confidence 9999999855444444445333 44489999999999875 45678999999999999876543 33333332
Q ss_pred eEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchhhhc
Q 027450 163 EIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFH 222 (223)
Q Consensus 163 ~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir~ 222 (223)
.+++.. + .+|.|||+|.+.||++.+||||+++++...+.+-|.+++
T Consensus 148 gi~i~~------~--------~~~~gG~iv~~~dg~i~id~T~ea~~~~l~~~L~~~~~~ 193 (198)
T PRK01558 148 GIELKP------F--------KGISKGFKIQQKDGSLYYDFSAEAIADILFSYLNPRFKE 193 (198)
T ss_pred CeEEcc------c--------CCcccceEEEEcCCCeEEeCcHHHHHHHHHHHhcHHHHH
Confidence 244432 1 379999999999999999999999999999999999875
No 8
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=99.85 E-value=3.7e-19 Score=148.27 Aligned_cols=187 Identities=12% Similarity=0.129 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQ 83 (223)
Q Consensus 4 ~~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ 83 (223)
+.++.=+++|.+.|+.+|+.+|.+|+.+|+++++ .|+++++.+...-.+...++++..+++..|......|..+|.
T Consensus 8 ~k~q~L~dki~~eiL~eA~~eA~~Il~eAk~~Ae----~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l~ 83 (207)
T PRK01005 8 DKLKQICDALREETLKPAEEEAGAIVHNAKEQAK----RIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLES 83 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455557788888999999999999999999998 899999988888888888888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCC----c----EEEEecccchHHHHHHHHHHHHHHHH
Q 027450 84 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEP----A----VLLRCRKDDHHLVESVLESAKEEYAQ 155 (223)
Q Consensus 84 ar~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~----e----~~v~~~~~D~~lv~~~~~~~~~~~~~ 155 (223)
+++++++.+|..+.++|..-.-++ ++||.+||...+...... + +...++|.+..-. +...+.+.+..
T Consensus 84 aKqevi~~vf~~a~~~lv~~~~~d---~~~l~~lI~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~l~~ 158 (207)
T PRK01005 84 LKQAVENKIFRESLGEWLEHVLTD---PEVSAKLIQALVQAIEAQGISGNLTAYIGKHVSARAVNEL--LGKEVTKKLKE 158 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHhhcccccccchhhhhcCCHHHHHHH--HHHHHHHHHHH
Confidence 999999999999999998754432 688888888777665322 1 3335566554432 33332333321
Q ss_pred hhCCCCCeEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchhhhc
Q 027450 156 KLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFH 222 (223)
Q Consensus 156 ~~g~~~~~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir~ 222 (223)
. .+++. ...|||+|.+.||++.+|||++++++.+|+.+.|.++.
T Consensus 159 ---~---gv~~~-----------------~~~gG~~v~~~dg~~~vd~t~d~i~~~~~~~l~~~~~~ 202 (207)
T PRK01005 159 ---K---GVSVG-----------------SFVGGAQLKVEEKNWVLDLSSQTLLDLLTRYLQKDFRE 202 (207)
T ss_pred ---c---CeEEe-----------------ccCCceEEEecCCeeEEeCcHHHHHHHHHHHhhHHHHH
Confidence 1 14443 12699999999999999999999999999999999985
No 9
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=99.62 E-value=2.5e-13 Score=117.01 Aligned_cols=185 Identities=17% Similarity=0.151 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------------HHHHHHHHHHHHHHHHHH----HHHHHHHHH-
Q 027450 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQL--------------VEAEKKKIRQEYERKEKQ----VEIRKKIEY- 70 (223)
Q Consensus 10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i--------------~~~~k~~i~~~~~~~~~~----~e~~~~~~~- 70 (223)
+..-...++.+|+.+|.+|..+|+.+++.-+..+ +++++. +.|+....+ +..+....+
T Consensus 38 ~~~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~---eGy~eG~~~G~~e~~~~~~~~i~ 114 (255)
T TIGR03825 38 EEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQ---EGYEAGFQAGESEALSIYQSTID 114 (255)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888888888887777443333 222221 123222221 111111101
Q ss_pred --HHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecccchHHHH
Q 027450 71 --SMQLNASR---IKVL-QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVE 143 (223)
Q Consensus 71 --S~~~~~~R---~~~L-~ar~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv~ 143 (223)
...+...+ ...+ ..+.++++=++.-|..=+...... -+..+..|+.+++..++. +.++|+|+|.|.+.+.
T Consensus 115 ~a~~i~~~a~~~~~~~l~~~e~el~~La~~iAeKIi~~el~~---~~e~i~~lv~~al~~l~~~~~i~I~v~p~d~~~v~ 191 (255)
T TIGR03825 115 EANAIVEEAKDDYEEKIESAQPLIIELACALAEKVIGVSLAE---DKNAFQALVRQVLSEVREFDEVSIYVHPHWYERVA 191 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhccCCCcEEEEECHHHHHHHH
Confidence 11111221 1222 244555555555555544443322 245689999999998887 6799999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchhh
Q 027450 144 SVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEV 220 (223)
Q Consensus 144 ~~~~~~~~~~~~~~g~~~~~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~I 220 (223)
.....+...++... .+.|..|+ . -..|||+|.|.+|. ||+|+++||+.+++.++-.+
T Consensus 192 ~~~~~l~~~~~~~~---~i~i~~D~--~-------------l~~GgcvIEt~~G~--iDasldtqLe~l~~~l~~~l 248 (255)
T TIGR03825 192 AQKDELQSILPACE---HLAVYPDE--K-------------LPDGGCYVETNFGR--IDASVDTQLEQLKEKLLEAL 248 (255)
T ss_pred HhHHHHHhhcCCCC---ceEEEeCC--C-------------CCCCCeEEEcCCce--EEeeHHHHHHHHHHHHHHHH
Confidence 87776665554322 24555553 2 34699999999998 89999999999999887655
No 10
>PRK09098 type III secretion system protein HrpB; Validated
Probab=99.56 E-value=2.4e-12 Score=109.43 Aligned_cols=181 Identities=17% Similarity=0.151 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 8 KQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ----EYERKEKQVEIRKKIEYSMQLNASRIKVLQ 83 (223)
Q Consensus 8 ~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~----~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ 83 (223)
..+..-.+.|+..|+++|++|..+|+++++ .|++++..+-++ .|.....++..+-...+.............
T Consensus 35 ~~~~~~~~~ila~Ar~~A~~Il~~A~~~A~----~I~~~A~~e~e~~~~~Gy~eG~~~a~~e~~~~~~~~~~~~~~~~~~ 110 (233)
T PRK09098 35 AAVHAERDAVLAAARARAERIVAEARAQAE----AILEAARREADRSARRGYAAGLRQALAEWHARGADHAFAERRAARR 110 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888888888888888888888 777776654433 333333333222111111111111112233
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcC--CCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCC
Q 027450 84 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLK--EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHP 161 (223)
Q Consensus 84 ar~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~--~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~ 161 (223)
.++++++-++..++.-+... + +..|-..+.+++..+. .+.++|+|+|.|.+.+...+......+ |+ .
T Consensus 111 ~e~~Lv~lv~~~v~kiv~~~--d----~~~ll~~v~~al~~~~~~~~~v~IrV~P~D~~~v~~~~~~~~~~~----g~-~ 179 (233)
T PRK09098 111 MRERLAEIVAAAVEQIVLGE--D----RAALFARAAQTLERVVDGASYLTVRVHPADLDAARAAFGAAAAAG----GR-N 179 (233)
T ss_pred HHHHHHHHHHHHHHHHHHhc--C----HHHHHHHHHHHHHHHhccCCcEEEEECHHHHHHHHHHHHHHHHhc----CC-C
Confidence 57788887777777666543 3 3445566777776542 368999999999999998776554333 33 2
Q ss_pred CeEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCch
Q 027450 162 PEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLP 218 (223)
Q Consensus 162 ~~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp 218 (223)
..+.+-.+..|+ .||+++.|..|. ||+||++||+.+.+-+-+
T Consensus 180 ~~l~Iv~Dp~L~-------------~GgCviET~~G~--IDasl~~ql~~L~~al~~ 221 (233)
T PRK09098 180 VPVEVVGDPRLA-------------PGACVCEWDFGV--FDASLDTQLRALRRALAR 221 (233)
T ss_pred cceEEEeCCCCC-------------CCCeEEEeCCCe--EecCHHHHHHHHHHHHHH
Confidence 234443333443 499999999998 799999999988765543
No 11
>PRK06937 type III secretion system protein; Reviewed
Probab=99.56 E-value=1.7e-12 Score=108.35 Aligned_cols=169 Identities=15% Similarity=0.189 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (223)
Q Consensus 14 ~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v~ 93 (223)
.+.|+..|+++|++|...|+++++..+..=.+++. .++..+....+.........-.....+++++=++
T Consensus 32 A~~il~~A~~~A~~i~~~A~~~~e~~~~~Gy~~G~-----------~~a~~e~~e~l~~~~~~~~~~~~~~e~~l~~Lvl 100 (204)
T PRK06937 32 AEELVEAARQRAEEIEAEAQEVYEQQKQLGYQAGL-----------DEARTEQAELILETVLQCQEFYRGVEQQMSEVVL 100 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999988743322222222 2211111011111111222123344566666555
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCC
Q 027450 94 EAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL 172 (223)
Q Consensus 94 ~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~~i~id~~~~L 172 (223)
.-+++=+..+ + -+.++..++.+++..+.+ +.++|+|+|.|.+.+...+......+++. | .+.|..|+ .|
T Consensus 101 ~ia~kil~~~--~---~~e~i~~lv~~al~~l~~~~~v~I~V~P~D~~~v~~~~~~~~~~~~~~-~--~l~i~~D~--~L 170 (204)
T PRK06937 101 EAVRKILNDY--D---DVERTLQVVREALALVSNQKQVVVRVNPDQAAAVREQIAKVLKDFPEV-G--YLEVVADA--RL 170 (204)
T ss_pred HHHHHHHhcc--C---cHHHHHHHHHHHHHhcccCCeEEEEECHHHHHHHHHHHHHHHHhCCCC-c--cEEEEeCC--CC
Confidence 5555444433 2 267888999999998876 67999999999999998776655555431 1 24555553 33
Q ss_pred CCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCch
Q 027450 173 PPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLP 218 (223)
Q Consensus 173 ~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp 218 (223)
..||+++.|..|. ||+||++||+.+.+.+.-
T Consensus 171 -------------~~Ggc~iET~~G~--vDasl~tql~~l~~al~~ 201 (204)
T PRK06937 171 -------------DQGGCILETEVGI--IDASLDGQLEALEQAFHS 201 (204)
T ss_pred -------------CCCCeEEecCCce--EEccHHHHHHHHHHHHHH
Confidence 4699999999998 899999999998876643
No 12
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=99.50 E-value=2.2e-11 Score=106.32 Aligned_cols=113 Identities=19% Similarity=0.312 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCC
Q 027450 84 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP 162 (223)
Q Consensus 84 ar~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~ 162 (223)
...++++-++.-|.+-+..+..+ .+.++..++.+++..+.+ +.++|+|+|.|.+++...+.++...|.... .+
T Consensus 164 ~e~elv~Lal~iaekvi~~~~~~---~~~~i~~li~~al~~l~~~~~i~I~V~p~d~~~l~~~~~~l~~~l~~~~---~i 237 (281)
T PRK06669 164 SEEEIVELALDIAKKVIKEISEN---SKEIALALVKELLKEVKDATDITIRVNPEDYEYVKEQKDELISLLDNEE---HL 237 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHcCcCCcEEEEECHHHHHHHHHhHHHHHHhcCCCC---Ce
Confidence 55667777777776666444443 578899999999998876 679999999999999998877766665322 34
Q ss_pred eEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchh
Q 027450 163 EIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPE 219 (223)
Q Consensus 163 ~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~ 219 (223)
.|..|+ .| ..|||+|.|.+|. ||+|+++||+.+++.++..
T Consensus 238 ~I~~D~--~l-------------~~GgcvIet~~G~--IDasi~tqLe~l~~~L~e~ 277 (281)
T PRK06669 238 KIYEDD--AI-------------SKGGCVIETDFGN--IDARIDTQLKQLKEKLLEN 277 (281)
T ss_pred EEEECC--CC-------------CCCCeEEEcCCCe--eeccHHHHHHHHHHHHHhh
Confidence 555553 22 3599999999998 8999999999998876543
No 13
>PRK06328 type III secretion system protein; Validated
Probab=99.49 E-value=2.4e-11 Score=102.70 Aligned_cols=170 Identities=16% Similarity=0.178 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (223)
Q Consensus 14 ~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v~ 93 (223)
.+.|+..|+++|++|..+|.++++ ++.+++.. +.|+....+...... .........+ -...+++++=++
T Consensus 31 A~~il~~a~~~ae~i~~ea~~e~E----~i~eeA~~---eGy~eG~~~~~~~~~-~l~~~~~~~~---~~~e~~lv~Lal 99 (223)
T PRK06328 31 AQELLEKTKEDSEAYTQETHEECE----KLREEAKN---QGFKEGSKAWSKQLA-FLEEETQKLR---EQVKEALVPLAI 99 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHHH
Confidence 568999999999999999999988 55554433 233333222111110 0111111111 223467777666
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCC
Q 027450 94 EAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL 172 (223)
Q Consensus 94 ~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~~i~id~~~~L 172 (223)
.-|++=+..-... -+..+..++.+|+..+.. ..++|+|+|.|.+++....+++...++... .+.|..|+ .|
T Consensus 100 ~ia~kVi~~el~~---d~e~il~lV~~aL~~l~~~~~v~I~VnP~D~~~v~~~~~~l~~~~~~~~---~~~I~~D~--~L 171 (223)
T PRK06328 100 ASVKKIIGKELEL---HPETIVSIIANSLKELTQHKRIIIHVNPKDLAIVEKSRPELKKIVEYAD---SLIISPKA--DV 171 (223)
T ss_pred HHHHHHHHHHHhh---CHHHHHHHHHHHHHhcccCCceEEEECHHHHHHHHHHHHHHHHhccCCC---ceEEEeCC--CC
Confidence 6666666543322 157788999999998876 579999999999999988776666665432 34666663 33
Q ss_pred CCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCc
Q 027450 173 PPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL 217 (223)
Q Consensus 173 ~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~l 217 (223)
-.||++|.|..|. ||+|+++||+.+...+.
T Consensus 172 -------------~~GgCiIET~~G~--VDasle~ql~~l~~al~ 201 (223)
T PRK06328 172 -------------TPGGCIIETEAGI--INAQLDVQLAALEKAFS 201 (223)
T ss_pred -------------CCCCeEEEeCCce--EEecHHHHHHHHHHHHH
Confidence 3599999999998 79999999988876554
No 14
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=99.28 E-value=1.3e-09 Score=87.59 Aligned_cols=149 Identities=19% Similarity=0.161 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 027450 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVL-QAQDDLVSN 91 (223)
Q Consensus 13 ~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L-~ar~~~i~~ 91 (223)
-.+.|+.+|+.+|+.|+..|+++++..+..-.+++......+....+.. .. ..+..++ .....+++
T Consensus 14 ~A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~~-----------~~-~~~~~~~~~~e~~l~~- 80 (166)
T TIGR02499 14 QAQAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLAE-----------WQ-QEAEQLEASLEERLAE- 80 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH-HHHHHHHHHHHHHHHH-
Confidence 5788999999999999999999998555444444333333222221111 11 1111111 12233333
Q ss_pred HHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEecccc
Q 027450 92 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHI 170 (223)
Q Consensus 92 v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~~i~id~~~ 170 (223)
++-.+.+++..-. ..+.++..++.+++..+.+ +.++|+|+|.|.+.+...+.... ... ++.|..|+
T Consensus 81 l~~~~~~kil~~~----~~~e~l~~lv~~al~~~~~~~~v~I~v~P~d~~~l~~~l~~~~----~~~---~~~i~~D~-- 147 (166)
T TIGR02499 81 LVLQALEQILGEY----DEPERLVRLLRQLLRAVANQGRLTLRVHPEQLDEVREALAERL----ALE---PWELEPDA-- 147 (166)
T ss_pred HHHHHHHHHhCCC----CCHHHHHHHHHHHHHhCCCCCceEEEECHHHHHHHHHHHHHHh----ccC---CeEEeeCC--
Confidence 3333333333322 2477888888888888776 68999999999999998776432 111 13454442
Q ss_pred CCCCCCCCCCCCCCCccCceEEEecCCcEE
Q 027450 171 YLPPGPGHHNAHGPSCSGGVVVASRDGKIV 200 (223)
Q Consensus 171 ~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~ 200 (223)
. -..||++|.|.+|.|.
T Consensus 148 ~-------------l~~G~c~vet~~G~vd 164 (166)
T TIGR02499 148 S-------------LAPGACVLETESGVVD 164 (166)
T ss_pred C-------------CCCCCEEEEeCCceee
Confidence 2 3579999999999864
No 15
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.27 E-value=5.2e-09 Score=89.11 Aligned_cols=188 Identities=17% Similarity=0.174 Sum_probs=122.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVL 82 (223)
Q Consensus 3 ~~~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L 82 (223)
+++..+.+.+....+...+++.++.|...+++-|+ +.++.+....-++.....+ ........++...+ ....+.
T Consensus 39 ~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~e~~e----eg~q~G~~eG~~~g~~~~~-~~e~~~~li~~~~~-~~~~~~ 112 (234)
T COG1317 39 EEELEQALEAKEEELESAAQELQEGIEEGAREGYE----EGFQLGYEEGFEEGQEEGR-VLERLAKLIAEFQA-ELEALK 112 (234)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHH
Confidence 34566778888888888999999999888888766 5555544433222211000 00000111111111 111112
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-C-cEEEEecccchHHHHHHHHHHHHHHHHhhCC
Q 027450 83 -QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-P-AVLLRCRKDDHHLVESVLESAKEEYAQKLQV 159 (223)
Q Consensus 83 -~ar~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~-~-e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~ 159 (223)
....++++-++.-|++=|...... -+..+..++.+++..... . .++++|||.|.+++...+.++. ...++
T Consensus 113 ~~~e~qLv~lvl~ia~~Vi~~~~~~---~~~~ll~~v~e~L~~~~~~~~~i~l~VnP~d~e~i~~~~~~~~----~~~~~ 185 (234)
T COG1317 113 EVVEKQLVQLVLEIARKVIGKELEL---DPEALLAAVREALEEVPLFAAAITLRVNPDDLEIIRQQLDEEL----SLLGW 185 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhc---CHHHHHHHHHHHHHhccccccCeEEEECHHHHHHHHHHHHHHH----hhcch
Confidence 245677777777777777776654 378999999999998766 3 7999999999999998886443 33444
Q ss_pred CCCeEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchhhh
Q 027450 160 HPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVF 221 (223)
Q Consensus 160 ~~~~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir 221 (223)
. ..|..| .. -..||++++|..|. +|-|+++||+.+.+.++|...
T Consensus 186 ~-l~l~~D--~~-------------l~~GgC~IeTe~G~--iDasld~ql~~L~~~~~~~~~ 229 (234)
T COG1317 186 R-LELVAD--PA-------------LSPGGCIIETEFGI--IDASLDTQLAALKRALLESLK 229 (234)
T ss_pred h-eeeccC--CC-------------CCCCCeEEEecCcc--ccccHHHHHHHHHHHHHhhhc
Confidence 1 224333 23 34599999999998 799999999999998887653
No 16
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=99.06 E-value=1.5e-07 Score=80.79 Aligned_cols=172 Identities=12% Similarity=0.164 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVS 90 (223)
Q Consensus 11 ~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~ 90 (223)
..-....+.+|+.++.+|..+|+.+++.++..+++++..++....+.....++.++.... -..+.++.+
T Consensus 59 ~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~-----------~~l~~ei~~ 127 (246)
T TIGR03321 59 RREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALS-----------DELRRRTGA 127 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Confidence 334556777899999999999999999888888888877776655554444444333222 122333444
Q ss_pred HHHHHHHHHHHhhccChhHHHHHHHHHHHH--------------HHHhcCCCcEEEE-ecccchHHHHHHHHHHHHHHHH
Q 027450 91 NMMEAASKEVLNVSRDHNSYKKLLKGLIVQ--------------SLLRLKEPAVLLR-CRKDDHHLVESVLESAKEEYAQ 155 (223)
Q Consensus 91 ~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~e--------------a~~~l~~~e~~v~-~~~~D~~lv~~~~~~~~~~~~~ 155 (223)
-++..|..-|....... ....++...|.+ ++.. ++..++|. ..|=+.+....+.. .+..
T Consensus 128 la~~~A~kil~~~~d~~-~~~~lid~~i~~l~~l~~~~~~~l~~~~~~-~~~~~~v~sa~~l~~~~~~~i~~----~l~~ 201 (246)
T TIGR03321 128 EVFAIARKVLTDLADTD-LEERMVDVFVQRLRTLDPDEKAALAEALAD-SGNPVLVRSAFELPEEQREQIRD----TIRE 201 (246)
T ss_pred HHHHHHHHHHHHhcChH-HHHHHHHHHHHHhhcCCHHHHHHHHHHHhC-CCCceEEEecCCCCHHHHHHHHH----HHHH
Confidence 44444444333322211 233333333321 1111 12234443 33333333333333 3333
Q ss_pred hhCCCCCeEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcC
Q 027450 156 KLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKK 216 (223)
Q Consensus 156 ~~g~~~~~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~ 216 (223)
.+|+ .+.+...- |++++|||++.. |..++|+|+.++|+.+...+
T Consensus 202 ~~~~-~v~~~~~v--------------dp~ligGi~l~~--g~~~id~Si~~~L~~l~~~~ 245 (246)
T TIGR03321 202 TLGP-EIRLRFQT--------------EPDLIGGIELTA--GGHKLAWSVDDYLESLEEDV 245 (246)
T ss_pred HHCC-CeeEEeee--------------CchhcCceEEEE--CCEEEechHHHHHHHHHhhc
Confidence 4443 23333321 138999999998 88999999999999877653
No 17
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=98.97 E-value=2.4e-07 Score=76.66 Aligned_cols=153 Identities=20% Similarity=0.299 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSN 91 (223)
Q Consensus 12 ~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~ 91 (223)
.....|+++|+.+|+.|+..|+++|+ .+++.+..++.+.+-.... .+-......|..+...-......
T Consensus 30 ~~a~~IL~~A~~qA~~Il~~Ae~eAe----~l~~~a~e~a~~~~~q~a~--------~ll~~~~~~~e~l~~~l~~~~~~ 97 (191)
T PF06188_consen 30 QQAREILEDARQQAEQILQQAEEEAE----ALLEQAYEQAEAQFWQQAN--------ALLQEWQQQREQLLQQLEEQAEE 97 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35589999999999999999999998 7776555544444322211 11111222333555555667777
Q ss_pred HHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEeccccC
Q 027450 92 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIY 171 (223)
Q Consensus 92 v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~~i~id~~~~ 171 (223)
++..+..+|..-..++..+..++..|+.+. .+...++++|+|.+.+-|..++.+ ++ ...+.+..| ..
T Consensus 98 ll~~al~~lL~e~~~~qrv~aLlr~l~~~~---~~~~~~tL~~hP~~~~~V~~~L~~----~~----~~~w~l~~D--~s 164 (191)
T PF06188_consen 98 LLSQALERLLDETPDQQRVAALLRQLLASQ---RQESEATLRCHPDQLEEVAAWLAE----HP----ALHWQLQAD--ES 164 (191)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHhc---ccccceEEEECHHHHHHHHHHHHh----CC----CcceeeccC--CC
Confidence 888888877664444447777887776554 345689999999999999988864 22 113566665 34
Q ss_pred CCCCCCCCCCCCCCccCceEEEecCCcEEEe
Q 027450 172 LPPGPGHHNAHGPSCSGGVVVASRDGKIVCE 202 (223)
Q Consensus 172 L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vd 202 (223)
|+ .|..++++..|.+.+|
T Consensus 165 l~-------------~~~l~L~t~~G~~~l~ 182 (191)
T PF06188_consen 165 LA-------------PDQLKLETANGEFRLD 182 (191)
T ss_pred CC-------------CCceEEEcCCCcEEEC
Confidence 54 4889999999997665
No 18
>PRK13386 fliH flagellar assembly protein H; Provisional
Probab=98.93 E-value=1.4e-07 Score=80.58 Aligned_cols=103 Identities=11% Similarity=0.173 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC--CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCC
Q 027450 85 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE--PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP 162 (223)
Q Consensus 85 r~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~--~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~ 162 (223)
++.+++=++.-|+.-+..-... -+..+..++.+|+..++. ..++|+|||.|.+++...+++. .. .+
T Consensus 121 ~~~ll~La~~iA~~vi~~el~~---~p~~il~~v~eaL~~lp~~~~~v~I~vnP~D~~~l~~~~~e~------~~---~~ 188 (236)
T PRK13386 121 RDELLDLVEKVTRQVIRCELTL---QPQQILALVEETLAALPDDPEQLKVHLNPEEFGRLKDLAPEK------VQ---AW 188 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhccccCCCeEEEECHHHHHHHHHhhhcc------cc---Ce
Confidence 4455555555555555443222 256677999999999865 5799999999999998766531 11 35
Q ss_pred eEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcC
Q 027450 163 EIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKK 216 (223)
Q Consensus 163 ~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~ 216 (223)
+|..|+ .| ..||++|.|.+|. ||.|+++||+.+.+.+
T Consensus 189 ~l~~D~--~l-------------~~GgC~Iet~~g~--iDa~ietRl~~~~~~l 225 (236)
T PRK13386 189 GLVADP--SL-------------SAGECRIVTDTSE--ADAGCEHRLDACMDAV 225 (236)
T ss_pred EEEeCC--Cc-------------CCCCEEEEeCCce--EeeCHHHHHHHHHHHH
Confidence 677664 33 4599999998887 8999999999887654
No 19
>PRK05687 fliH flagellar assembly protein H; Validated
Probab=98.88 E-value=1.4e-06 Score=74.69 Aligned_cols=108 Identities=24% Similarity=0.297 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcC--CCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCC
Q 027450 85 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLK--EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP 162 (223)
Q Consensus 85 r~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~--~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~ 162 (223)
...+++-++.-|+.-+...... -+..+..++.+++..+. .+.++|+|+|.|.++++..+.. .+. .. ++
T Consensus 134 e~~Lv~Lal~ia~~vi~~el~~---~~~~il~~v~~al~~lp~~~~~v~i~v~P~D~~~v~~~~~~---~~~-~~---~~ 203 (246)
T PRK05687 134 ESRLVQLALELARQVIGQELKT---DPSAILAAIRELLQALPMFSGKPQLRVNPDDLELVEQLLGA---ELS-LH---GW 203 (246)
T ss_pred HHHHHHHHHHHHHHHHHhhhcc---CHHHHHHHHHHHHHhccccCCCceEEECHHHHHHHHHHHhh---HHH-hC---Ce
Confidence 4556665566556555543332 25677789999999875 3679999999999999987752 222 12 35
Q ss_pred eEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchh
Q 027450 163 EIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPE 219 (223)
Q Consensus 163 ~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~ 219 (223)
.|..|. .| -.|||+|.|.+|. ||.|+++||+.+.+.+.+.
T Consensus 204 ~l~~D~--~l-------------~~Ggc~iet~~g~--vDa~l~~r~~~l~~~l~~~ 243 (246)
T PRK05687 204 RLLADP--SL-------------HRGGCRISAEEGD--VDASLETRWQEVCRLLAPG 243 (246)
T ss_pred EEEeCC--Cc-------------CCCCeEEEeCCCc--eeccHHHHHHHHHHHHhcc
Confidence 677764 33 3599999999998 7999999999999887653
No 20
>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE. Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].
Probab=98.82 E-value=4e-07 Score=69.65 Aligned_cols=101 Identities=23% Similarity=0.338 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHH-HhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCC
Q 027450 84 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSL-LRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHP 161 (223)
Q Consensus 84 ar~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~-~~l~~-~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~ 161 (223)
.++++++-++.-|..-+...... -+..+..++.+++ ..+.. +.++|+|+|.|.+.+...+.+.... . +
T Consensus 25 ~~~~l~~l~~~iae~vi~~~l~~---~~~~i~~~i~~al~~~~~~~~~v~I~v~p~d~~~l~~~~~~~~~~----~---~ 94 (128)
T PF02108_consen 25 LEQELVELALAIAEKVIGRELEE---DPEAILNLIREALQELPRDEEKVTIRVHPDDYEALEELLEDELPE----L---G 94 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHhhccCCCeEEEECHHHHHHHHHHHHHHHhh----c---C
Confidence 45666666666666555533222 2567778888888 54444 5799999999999999877632221 1 3
Q ss_pred CeEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHH
Q 027450 162 PEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV 211 (223)
Q Consensus 162 ~~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~ 211 (223)
++|..|+ .| ..|||++.|++|. ||.|+++||+.
T Consensus 95 ~~l~~D~--~l-------------~~G~c~iet~~g~--iD~~i~~ql~~ 127 (128)
T PF02108_consen 95 WELVADP--SL-------------APGDCRIETEDGI--IDASIETQLEA 127 (128)
T ss_pred CEEEecC--CC-------------CCCCEEEEECCee--EEeCHHHHHhc
Confidence 4677764 33 3599999998887 79999999975
No 21
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []. The function of this family is unclear.; GO: 0009877 nodulation
Probab=98.66 E-value=9.1e-06 Score=67.32 Aligned_cols=168 Identities=18% Similarity=0.165 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME 94 (223)
Q Consensus 15 ~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v~~ 94 (223)
..++..|+..|..|...|+..|+.++.+=.+++.....+ +.-..++.........+-.-.+++.+=++.
T Consensus 33 ~~~~aAA~~~A~~ir~~Ar~ayE~~rarGyeeG~~~g~e-----------~~A~llaqa~a~v~r~~a~LE~~l~~LVl~ 101 (207)
T PF06635_consen 33 AAFLAAARREAQRIREWARAAYERERARGYEEGRRAGAE-----------QAARLLAQATAEVARYLAGLEQELAELVLE 101 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788889999999999999885554433333322211 111122222222111334445778887777
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCCC
Q 027450 95 AASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLP 173 (223)
Q Consensus 95 ~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~~i~id~~~~L~ 173 (223)
-+++=|..|.. .++|.+.+.+++..+.. ..++|+|.|.|.+.+...+..+. .+ .|. .+|.|..+..|+
T Consensus 102 ~Vr~ILg~fd~-----~ell~r~vr~Al~~~~~~~~v~l~V~P~~vd~l~~~la~~~-~~---~g~--~~i~I~aDp~La 170 (207)
T PF06635_consen 102 IVRKILGEFDP-----DELLVRAVRQALSQIRQGAEVTLRVAPADVDMLRRELAALE-GR---PGR--PKIRIVADPRLA 170 (207)
T ss_pred HHHHHHhcCCh-----HHHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHhhh-cc---CCC--CceeeecCCCCC
Confidence 77777777754 56888888888887766 47999999999999998776542 22 233 245555445564
Q ss_pred CCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchh
Q 027450 174 PGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPE 219 (223)
Q Consensus 174 ~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~ 219 (223)
.|.+|+.|.-|. ||-+|++-|+.+..-+.|.
T Consensus 171 -------------~~~Cvlese~G~--VdagL~aQL~ALr~a~~~~ 201 (207)
T PF06635_consen 171 -------------AGQCVLESEFGV--VDAGLDAQLRALRLAFGPL 201 (207)
T ss_pred -------------CCCeeeecccch--hhccHHHHHHHHHHHhcch
Confidence 499999999998 7999999999998888764
No 22
>PRK06032 fliH flagellar assembly protein H; Validated
Probab=98.63 E-value=1.7e-05 Score=65.98 Aligned_cols=108 Identities=13% Similarity=0.067 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHH-HHHHHHHHHHHhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCC
Q 027450 85 QDDLVSNMMEAASKEVLNVSRDHNSYKK-LLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP 162 (223)
Q Consensus 85 r~~~i~~v~~~a~e~L~~~~~~~~~Y~~-~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~ 162 (223)
++++++=++.-++.-+...... .+. .+..++.+++..+.+ +.++|+|+|.|.+.+...+.+....+. . ..
T Consensus 86 ~~~lv~La~~iarkvi~~~l~~---~p~a~v~~~v~eal~~l~~~~~v~I~v~P~d~~~l~~~l~~~~~~~~----~-~~ 157 (199)
T PRK06032 86 ETEAADLALAVARKIAGAALAA---EPLAEITAAVRDCLRHLVATPHLVVRVNDALVEAARERLERLARESG----F-EG 157 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCCcEEEEECHHHHHHHHHHHHHHHHhcC----c-Cc
Confidence 4445554444444444433222 233 577888888887766 569999999999999988876544432 2 23
Q ss_pred eEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhc
Q 027450 163 EIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRK 215 (223)
Q Consensus 163 ~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~ 215 (223)
.+.+-.+..|+ .||++|.+.+|+ +|+|+.+++..+.+-
T Consensus 158 ~~~l~~D~~L~-------------~G~c~vet~~G~--vd~d~~~~~~~I~~a 195 (199)
T PRK06032 158 RLVVLADPDMA-------------PGDCRLEWADGG--VVRDRAAIEARIEEA 195 (199)
T ss_pred cEEEeeCCCCC-------------CCCeEEEeCCCe--EecCHHHHHHHHHHH
Confidence 34444334443 599999999998 688888888776554
No 23
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=98.33 E-value=1.9e-05 Score=63.92 Aligned_cols=91 Identities=18% Similarity=0.170 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV 89 (223)
Q Consensus 10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i 89 (223)
+..-...++.+|+.++.+|..+|..+++..+..+++++........ ....+......+..+...|++++
T Consensus 75 ~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~-----------~~a~~~ie~Ek~~a~~elk~eii 143 (167)
T PRK08475 75 KKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLI-----------KSFEELMEFEVRKMEREVVEEVL 143 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788888888888888888888777777766655544332 23344555556667888999999
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHHHH
Q 027450 90 SNMMEAASKEVLNVSRDHNSYKKLLKG 116 (223)
Q Consensus 90 ~~v~~~a~e~L~~~~~~~~~Y~~~L~~ 116 (223)
+++|+. +|.+++.+ .|.+++.+
T Consensus 144 ~~~~~~---~~~~l~~~--~y~~~~~~ 165 (167)
T PRK08475 144 NELFES---KKVSLNQQ--EYVNILLK 165 (167)
T ss_pred HHHHHh---hhcCCCHH--HHHHHHhc
Confidence 999999 89999876 79999865
No 24
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=98.29 E-value=0.00063 Score=58.58 Aligned_cols=166 Identities=15% Similarity=0.147 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (223)
Q Consensus 14 ~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v~ 93 (223)
...-+.+|+.++.+|..+|+.+++.++..++.+++..+....++....++.+++. .+-..+.++.+-++
T Consensus 62 ~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~-----------a~~~L~~~v~~la~ 130 (250)
T PRK14474 62 YRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQE-----------FFKALQQQTGQQMV 130 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 4455668888888888888888888888888777766655544443333333322 22233455566666
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHHHH----------HH--hcCCCcEEEEe----cccchHHHHHHHHHHHHHHHH-h
Q 027450 94 EAASKEVLNVSRDHNSYKKLLKGLIVQS----------LL--RLKEPAVLLRC----RKDDHHLVESVLESAKEEYAQ-K 156 (223)
Q Consensus 94 ~~a~e~L~~~~~~~~~Y~~~L~~Li~ea----------~~--~l~~~e~~v~~----~~~D~~lv~~~~~~~~~~~~~-~ 156 (223)
.-|.+-|....... ....++..++.+- +. .-++..++|+. .|.+...+...+ .. .
T Consensus 131 ~~A~kiL~~~~d~~-~~~~lid~~i~~l~~l~~~~r~~l~~~~~~~~~~~i~ta~~l~~~~~~~~~~~l-------~~~~ 202 (250)
T PRK14474 131 KIIRAALADLANAT-LEQQIVGIFIARLEHLSEAERQALANSNTTPEMLRIRTSFELSQDLRAQILESL-------HQTH 202 (250)
T ss_pred HHHHHHHHhhcCHH-HHHHHHHHHHHHhcccCHHHHHHHHhhhcCCCCeEEEeCCCCCHHHHHHHHHHH-------HHHh
Confidence 66666666554332 3444544444221 11 01222344432 223333333333 23 2
Q ss_pred hCCCCCeEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhc
Q 027450 157 LQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRK 215 (223)
Q Consensus 157 ~g~~~~~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~ 215 (223)
.|. ++.+.+.. + ++.++|+-|.. |+-.|.|||++.|+..-..
T Consensus 203 ~~~-~~~~~f~~------~--------p~li~Giel~~--~~~~i~ws~~~yl~~l~~~ 244 (250)
T PRK14474 203 LIP-GTDIHFVT------S--------PELICGIELKT--EGYKIAWTLAEYLDALESQ 244 (250)
T ss_pred cCC-CCceeeec------C--------cccccCeEEec--CCceEeccHHHHHHHHHHH
Confidence 333 33444432 1 37899999998 6677999999999876443
No 25
>PRK13436 F0F1 ATP synthase subunit delta; Provisional
Probab=97.33 E-value=0.0031 Score=51.55 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=28.4
Q ss_pred CCccCceEEEecCCcEEEeccHHHHHHHHHhcCc
Q 027450 184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL 217 (223)
Q Consensus 184 ~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~l 217 (223)
++++|||++.. |.-++|.|+.+||+.+...++
T Consensus 147 pslIGGi~i~~--gd~viD~Sik~~L~~l~~~l~ 178 (179)
T PRK13436 147 PKLIAGIKIKV--DNKVFENSIKSKLKELKKQVL 178 (179)
T ss_pred HHHcCceEEEE--CCEEeehhHHHHHHHHHHHHh
Confidence 48999999998 888899999999999887664
No 26
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=97.30 E-value=0.079 Score=44.40 Aligned_cols=59 Identities=20% Similarity=0.248 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKI 68 (223)
Q Consensus 6 ~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~ 68 (223)
.-...+.-...|+.+|+.+|++|..+|+.+++ ++++++..++..+..+....+++..+.
T Consensus 21 iL~eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe----~ii~~A~~eae~ek~r~~s~a~l~~R~ 79 (207)
T PRK01005 21 TLKPAEEEAGAIVHNAKEQAKRIIAEAQEEAE----KIIRSAEETADQKLKQGESALVQAGKR 79 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777889999999999999999999987 888888888887777666655554433
No 27
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=96.98 E-value=0.053 Score=40.40 Aligned_cols=69 Identities=17% Similarity=0.134 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASR 78 (223)
Q Consensus 10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R 78 (223)
-+.-...++.+|+.++.+|+..|..+++..+..++.++......-.+....+++..+..+++.......
T Consensus 11 aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia 79 (103)
T PRK08404 11 AEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIE 79 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677778888888888888877777777777766665555555555555555554444443333
No 28
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=96.92 E-value=0.021 Score=49.75 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=27.7
Q ss_pred CCccCceEEEecCCcEEEeccHHHHHHHHHhcC
Q 027450 184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKK 216 (223)
Q Consensus 184 ~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~ 216 (223)
++++|||++.. |.-++|+|+.+||+.+...+
T Consensus 239 psLIGGivI~v--Gd~viD~Sv~~rL~~L~~~L 269 (271)
T PRK13430 239 PSVLGGMRVQV--GDEVIDGSVAGRLERLRRRL 269 (271)
T ss_pred ccccCcEEEEE--CCEEEehhHHHHHHHHHHHh
Confidence 48999999998 88899999999999887764
No 29
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=96.92 E-value=0.095 Score=43.18 Aligned_cols=129 Identities=16% Similarity=0.210 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q 027450 4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKK--------IEYSMQLN 75 (223)
Q Consensus 4 ~~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~--------~~~S~~~~ 75 (223)
.++-++.+.-.+.|+.+|+.+|++|..+|.++++.+...+++.++..+..+..+....+..+.+ ..++....
T Consensus 9 ~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~~~v~~ 88 (198)
T PRK03963 9 QEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELISEVLE 88 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667788999999999999999999999999888899998887776555544433333222 22333444
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHh----hccChhHHHHHHHHHHHHHHHhcCCCcEEEEec
Q 027450 76 ASRIKVLQ----AQDDLVSNMMEAASKEVLN----VSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCR 135 (223)
Q Consensus 76 ~~R~~~L~----ar~~~i~~v~~~a~e~L~~----~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~ 135 (223)
..+.++.+ .-..++..++.++...|.. +...+.+. .++..++......++ .+.+.+.
T Consensus 89 ~a~~~l~~~~~~~Y~~~l~~li~~a~~~l~~~~i~i~~~~~D~-~~~~~~~~~~~~~~~--~~~i~~~ 153 (198)
T PRK03963 89 AVRERLAELPEDEYFETLKALTKEAVEELGEDKVVVRSNERTL-KLIDSRLEEIRDELG--DVEIELG 153 (198)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCCcEEEEEccccH-HHHHHHHHHHHHHhC--CeEEEEC
Confidence 44433322 1345666677766666642 22222122 466665555544443 4455544
No 30
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=96.90 E-value=0.1 Score=42.30 Aligned_cols=96 Identities=8% Similarity=0.112 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNM 92 (223)
Q Consensus 13 ~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v 92 (223)
-....+.+|+.++.+|...|..+++..+..++.++...+....+.....++.+ .....-..+.++++-+
T Consensus 75 ~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e-----------~~~a~~~l~~qi~~la 143 (174)
T PRK07352 75 EAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAE-----------QERVIAQLRREAAELA 143 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 44556788888888888888888887777777666555544333332222222 2223344567788888
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHHHH
Q 027450 93 MEAASKEVLNVSRDHNSYKKLLKGLIVQ 120 (223)
Q Consensus 93 ~~~a~e~L~~~~~~~~~Y~~~L~~Li~e 120 (223)
+..|...|..-..+. ....++...|.+
T Consensus 144 ~~~A~kil~~~l~~~-~~~~li~~~i~~ 170 (174)
T PRK07352 144 IAKAESQLPGRLDED-AQQRLIDRSIAN 170 (174)
T ss_pred HHHHHHHHHhHcCHH-HHHHHHHHHHHh
Confidence 888888887654332 455555555543
No 31
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=96.85 E-value=0.1 Score=43.64 Aligned_cols=99 Identities=19% Similarity=0.123 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV 89 (223)
Q Consensus 10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i 89 (223)
+..-.+..+++|+.+|.+|...|.++++..+..++.++..++....+....+++.++ +...-..+.++.
T Consensus 101 ~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek-----------~~a~~~Lk~ei~ 169 (205)
T PRK06231 101 LLENAKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKER-----------RELKEQLQKESV 169 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 334456677888888888888888888877777766655554433333322222222 212334456666
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q 027450 90 SNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120 (223)
Q Consensus 90 ~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~e 120 (223)
+-...-|..-|..-.. ++....++.+.|.+
T Consensus 170 ~lAv~iA~kiL~k~ld-~~~~~~lI~~~i~~ 199 (205)
T PRK06231 170 ELAMLAAEELIKKKVD-REDDDKLVDEFIRE 199 (205)
T ss_pred HHHHHHHHHHHHhhCC-HHHHHHHHHHHHHH
Confidence 6666666666655433 22566666666544
No 32
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=96.79 E-value=0.085 Score=43.18 Aligned_cols=56 Identities=25% Similarity=0.245 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 027450 4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKE 59 (223)
Q Consensus 4 ~~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~ 59 (223)
+++.++-++-.+.|+.+|+.++++|..+|+++++..+..+..++.........+..
T Consensus 8 ~~I~~~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~ 63 (188)
T PRK02292 8 EDIRDEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQEL 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888999999999999999999999996666665555554444433333
No 33
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=96.78 E-value=0.022 Score=53.02 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=27.3
Q ss_pred CCccCceEEEecCCcEEEeccHHHHHHHHHhcC
Q 027450 184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKK 216 (223)
Q Consensus 184 ~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~ 216 (223)
++++|||++.. |..++|.|+.+||+.+...+
T Consensus 413 psLiGGivI~v--Gd~viD~Sv~~rL~~l~~~l 443 (445)
T PRK13428 413 PELLGGLSIAV--GDEVIDGTLSSRLAAAEAQL 443 (445)
T ss_pred chhhCceEEEE--CCEEeehhHHHHHHHHHhhC
Confidence 48999999998 88999999999999876543
No 34
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=96.78 E-value=0.15 Score=41.77 Aligned_cols=98 Identities=16% Similarity=0.175 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSN 91 (223)
Q Consensus 12 ~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~ 91 (223)
.-....+.+|+.++.+|+..|..+++..+..++.++...+....+.....++.++ ....-..+.++.+-
T Consensus 79 ~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek-----------~~a~~~l~~ei~~l 147 (184)
T CHL00019 79 EKARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETIRFEQ-----------QRAINQVRQQVFQL 147 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 3445678888888899999998888877777877766655544433322222222 22334456777777
Q ss_pred HHHHHHHHHHhhccChhHHHHHHHHHHHHH
Q 027450 92 MMEAASKEVLNVSRDHNSYKKLLKGLIVQS 121 (223)
Q Consensus 92 v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea 121 (223)
++..|..-|...... +....++...|.+.
T Consensus 148 av~~A~kil~~~ld~-~~~~~lid~~i~~l 176 (184)
T CHL00019 148 ALQRALGTLNSCLNN-ELHLRTINANIGLL 176 (184)
T ss_pred HHHHHHHHHHhHcCH-HHHHHHHHHHHHHH
Confidence 888888777775532 24555555555443
No 35
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=96.74 E-value=0.26 Score=40.90 Aligned_cols=57 Identities=25% Similarity=0.221 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR 65 (223)
Q Consensus 5 ~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~ 65 (223)
+.-.+-++-.+.|+.+|+++|++|..+|+++++ .|+..+...+.....+....+...
T Consensus 15 ~~~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe----~i~~kAe~ea~~~~~~~~saa~l~ 71 (198)
T PRK01558 15 DGLEEAERLANEIILEAKEEAEEIIAKAEEEAK----ELKAKAEKEANDYKRHALEASRQA 71 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556778899999999999999999999988 777777766663333334344433
No 36
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=96.72 E-value=0.17 Score=40.53 Aligned_cols=99 Identities=11% Similarity=0.125 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV 89 (223)
Q Consensus 10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i 89 (223)
+..-....+.+|+.+|.+|...|..+++..+..++.++..++....+....+++.++.. .+-..+.++.
T Consensus 61 ~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~-----------a~~~L~~~i~ 129 (164)
T PRK14473 61 AKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQR-----------MLSELKSQIA 129 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 44455677788888888888888888887777777776666554444333333332221 2233345666
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q 027450 90 SNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120 (223)
Q Consensus 90 ~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~e 120 (223)
+-.+.-|..-|..-. +++.+..++...|.+
T Consensus 130 ~la~~~a~kil~~~l-~~~~~~~li~~~i~~ 159 (164)
T PRK14473 130 DLVTLTASRVLGAEL-QARGHDALIAESLAA 159 (164)
T ss_pred HHHHHHHHHHHHhHc-CHHHHHHHHHHHHHh
Confidence 666666665554432 323455555555543
No 37
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=96.72 E-value=0.029 Score=45.96 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=28.5
Q ss_pred CCccCceEEEecCCcEEEeccHHHHHHHHHhcCc
Q 027450 184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL 217 (223)
Q Consensus 184 ~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~l 217 (223)
++++|||++.. |.-++|.|+.+||+.+...+.
T Consensus 143 psLIGG~ii~i--gd~viD~Svk~~L~~l~~~l~ 174 (184)
T PRK13434 143 KNLLGGFVVQF--NDLKIEKSIASQLGEIKKAML 174 (184)
T ss_pred hHHcCceEEEE--CCEEEeHhHHHHHHHHHHHHH
Confidence 48999999998 888899999999999887763
No 38
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=96.65 E-value=0.096 Score=43.06 Aligned_cols=63 Identities=11% Similarity=0.138 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRK 66 (223)
Q Consensus 4 ~~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~ 66 (223)
.++.+..+.-+..|+.+|+.+|++|..+|+++++..+..+.......+....++....+.+..
T Consensus 8 ~~I~~ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~ 70 (185)
T PRK01194 8 KDIEKSREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEA 70 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 356677888899999999999999999999999988888888887777777776666555543
No 39
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=96.65 E-value=0.22 Score=39.70 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVS 90 (223)
Q Consensus 11 ~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~ 90 (223)
..-....+.+|+.++.+|..+|+.+++..+..++.++...+....+.....++.++. ..+-..+.++.+
T Consensus 59 ~~e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~e~~-----------~a~~~l~~ei~~ 127 (159)
T PRK13461 59 KLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQREKE-----------KAEYEIKNQAVD 127 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 334566778888888888888888888777777777666555443333222222221 122334566666
Q ss_pred HHHHHHHHHHHhhccChhHHHHHHHHHHH
Q 027450 91 NMMEAASKEVLNVSRDHNSYKKLLKGLIV 119 (223)
Q Consensus 91 ~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ 119 (223)
-.+.-|..-|...... +....++...|.
T Consensus 128 lA~~~a~kil~~~~~~-~~~~~li~~~i~ 155 (159)
T PRK13461 128 LAVLLSSKALEESIDE-SEHRRLIKDFIS 155 (159)
T ss_pred HHHHHHHHHHHhHcCH-HHHHHHHHHHHh
Confidence 6666666666554432 245555555443
No 40
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=96.58 E-value=0.24 Score=40.08 Aligned_cols=97 Identities=20% Similarity=0.263 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSN 91 (223)
Q Consensus 12 ~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~ 91 (223)
.-....+.+|+.++.+|...|..+++..+..++.++...+....+....+++.+++ . .+-..+.++.+-
T Consensus 71 ~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~----~-------a~~el~~ei~~l 139 (173)
T PRK13460 71 KDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKG----K-------ALSQLQNQIVEM 139 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-------HHHHHHHHHHHH
Confidence 34556678888888888888888888777777666655554433333222222221 1 223344667777
Q ss_pred HHHHHHHHHHhhccChhHHHHHHHHHHHH
Q 027450 92 MMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120 (223)
Q Consensus 92 v~~~a~e~L~~~~~~~~~Y~~~L~~Li~e 120 (223)
.+.-|..-|.+.... +....++...|.+
T Consensus 140 A~~~a~kil~~~l~~-~~~~~lid~~i~~ 167 (173)
T PRK13460 140 TITIASKVLEKQLKK-EDYKAFIETELAK 167 (173)
T ss_pred HHHHHHHHHHHHCCH-HHHHHHHHHHHHH
Confidence 777777766665433 2455555555544
No 41
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=96.44 E-value=0.33 Score=38.32 Aligned_cols=97 Identities=13% Similarity=0.062 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV 89 (223)
Q Consensus 10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i 89 (223)
+..-....+.+|+.++.+|+..|..+++..+..++.++...+....+.....+..++ ....-..+.++.
T Consensus 57 ~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~-----------~~a~~~l~~~~~ 125 (156)
T PRK05759 57 AQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQER-----------KRAREELRKQVA 125 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 344556677888888888888888888866666666655554433333222222211 112234456666
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHH
Q 027450 90 SNMMEAASKEVLNVSRDHNSYKKLLKGLI 118 (223)
Q Consensus 90 ~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li 118 (223)
+-++.-|..-|...... +....++...|
T Consensus 126 ~lA~~~a~k~l~~~~d~-~~~~~~i~~~i 153 (156)
T PRK05759 126 DLAVAGAEKILGRELDA-AAQSDLIDKLI 153 (156)
T ss_pred HHHHHHHHHHHHhHcCH-HHHHHHHHHHH
Confidence 66666666666654432 23445555444
No 42
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=96.41 E-value=0.36 Score=39.13 Aligned_cols=95 Identities=14% Similarity=0.182 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNM 92 (223)
Q Consensus 13 ~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v 92 (223)
-....+.+|+.+|.+|...|+.+++..+..++.++...+....+....+++.+ .....-..+.++.+-.
T Consensus 74 e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e-----------~~~a~~~l~~~i~~lA 142 (175)
T PRK14472 74 KNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQE-----------KRRALDVLRNEVADLA 142 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 34566677777778888888877776666665555444433322222222211 1112233445566666
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHHH
Q 027450 93 MEAASKEVLNVSRDHNSYKKLLKGLIV 119 (223)
Q Consensus 93 ~~~a~e~L~~~~~~~~~Y~~~L~~Li~ 119 (223)
+..|.+-|...... +....++...|.
T Consensus 143 ~~~a~kil~~~l~~-~~~~~li~~~i~ 168 (175)
T PRK14472 143 VKGAEKIIRTSLDA-DKQKKVVDSMIQ 168 (175)
T ss_pred HHHHHHHHHHHCCH-HHHHHHHHHHHH
Confidence 66666555554322 234444444443
No 43
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=96.31 E-value=0.42 Score=38.23 Aligned_cols=100 Identities=15% Similarity=0.124 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV 89 (223)
Q Consensus 10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i 89 (223)
+..-....+.+|+.++.+|...|+++++..+..++.++...+....+....+++.++ ....-..+.++.
T Consensus 61 ~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek-----------~~a~~~l~~~i~ 129 (164)
T PRK14471 61 LQADNERLLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEK-----------NAAMAEIKNQVA 129 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 333445566777777777777777777744444444443333322222211111111 112233445666
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q 027450 90 SNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120 (223)
Q Consensus 90 ~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~e 120 (223)
+-++.-|..-|..-..+++....++...|.+
T Consensus 130 ~la~~~a~kil~~~l~~~~~~~~lid~~i~~ 160 (164)
T PRK14471 130 NLSVEIAEKVLRKELSNKEKQHKLVEKMLGD 160 (164)
T ss_pred HHHHHHHHHHHHHHcCcHhHHHHHHHHHHHh
Confidence 6666666666655222211345555554443
No 44
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=96.30 E-value=0.31 Score=36.57 Aligned_cols=44 Identities=30% Similarity=0.314 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027450 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY 55 (223)
Q Consensus 12 ~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~ 55 (223)
.-...|..+|+.+|.+|..+|+.++...+..+++.+...+..+-
T Consensus 28 Ee~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea 71 (108)
T COG2811 28 EEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEA 71 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666555555555544444333
No 45
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=96.28 E-value=0.3 Score=39.73 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=13.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 027450 28 ISVSAEEEFNIEKLQLVEAEKKKIRQEYER 57 (223)
Q Consensus 28 I~~~A~~ea~~ek~~i~~~~k~~i~~~~~~ 57 (223)
|..+|+++++ .|+.++.......+..
T Consensus 2 I~~eA~~ka~----~I~~eA~~e~~~i~~~ 27 (198)
T PF01991_consen 2 IEEEAQEKAE----EIIAEAQEEAEKILEE 27 (198)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 5556666655 5555554444443333
No 46
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=96.20 E-value=0.47 Score=37.72 Aligned_cols=96 Identities=25% Similarity=0.270 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (223)
Q Consensus 14 ~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v~ 93 (223)
...-+.+|+.++.+|...|..+++ .++++...+.....++....++..- .......+-..|.++.+-.+
T Consensus 59 ~e~~L~~A~~ea~~ii~~A~~~a~----~~~~~a~~~a~~~~~~~~~~a~~~I-------~~ek~~a~~el~~~~~~lA~ 127 (159)
T PRK09173 59 YQRKRKEAEKEAADIVAAAEREAE----ALTAEAKRKTEEYVARRNKLAEQKI-------AQAETDAINAVRSSAVDLAI 127 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 334555566666666666666555 4444433333333322221111111 11111122333455555555
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHHHH
Q 027450 94 EAASKEVLNVSRDHNSYKKLLKGLIVQS 121 (223)
Q Consensus 94 ~~a~e~L~~~~~~~~~Y~~~L~~Li~ea 121 (223)
.-|..-|..-. +++....++...|.+.
T Consensus 128 ~~A~kil~~~l-~~~~~~~li~~~i~~~ 154 (159)
T PRK09173 128 AAAEKLLAEKV-DAKAASELFKDALAQV 154 (159)
T ss_pred HHHHHHHHhhc-CHHHHHHHHHHHHHHH
Confidence 55555554433 2224556666555543
No 47
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=96.05 E-value=0.62 Score=37.72 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027450 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY 55 (223)
Q Consensus 13 ~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~ 55 (223)
-....+.+|+.++.+|..+|+.+++..+..++.++...+....
T Consensus 74 e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~ 116 (173)
T PRK13453 74 ENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMI 116 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777788888877777666666666555544433
No 48
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=96.02 E-value=0.48 Score=44.21 Aligned_cols=96 Identities=15% Similarity=0.079 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (223)
Q Consensus 14 ~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v~ 93 (223)
....+.+|+.++.+|..+|+++++..+..++.++..++....+....+++.+++. .+-..|.++.+-++
T Consensus 58 ~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~-----------a~~elr~ei~~lAv 126 (445)
T PRK13428 58 HTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRAQ-----------LTRQLRLELGHESV 126 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 4457778888888888888888886666666665555444333333333332221 22333456666666
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHHH
Q 027450 94 EAASKEVLNVSRDHNSYKKLLKGLIVQ 120 (223)
Q Consensus 94 ~~a~e~L~~~~~~~~~Y~~~L~~Li~e 120 (223)
..|.+-|.+-..+++....++...|.+
T Consensus 127 ~~A~kil~~~l~d~~~~~~lId~~i~~ 153 (445)
T PRK13428 127 RQAGELVRNHVADPAQQSATVDRFLDE 153 (445)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666654222221334555555533
No 49
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=95.92 E-value=0.69 Score=37.20 Aligned_cols=96 Identities=19% Similarity=0.175 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNM 92 (223)
Q Consensus 13 ~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v 92 (223)
-....+.+|+.++.+|..+|..+++..+..++..+...+. +....++.. ........+-..|.++.+-+
T Consensus 66 ~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~----~~~~~A~~~-------I~~e~~~a~~el~~e~~~lA 134 (167)
T PRK14475 66 DVKAEREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIK----RRAEMAERK-------IAQAEAQAAADVKAAAVDLA 134 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666444444433322222 221111111 11111112233445666666
Q ss_pred HHHHHHHHHh-hccChhHHHHHHHHHHHHH
Q 027450 93 MEAASKEVLN-VSRDHNSYKKLLKGLIVQS 121 (223)
Q Consensus 93 ~~~a~e~L~~-~~~~~~~Y~~~L~~Li~ea 121 (223)
+..|.+-|.. +.. +....++...|.+.
T Consensus 135 v~~A~kil~~~l~~--~~~~~lid~~i~~~ 162 (167)
T PRK14475 135 AQAAETVLAARLAG--AKSDPLVDAAIGQM 162 (167)
T ss_pred HHHHHHHHHhHcCH--HHHHHHHHHHHHHH
Confidence 6666666633 322 24556666665443
No 50
>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]
Probab=95.92 E-value=0.063 Score=43.94 Aligned_cols=111 Identities=14% Similarity=0.236 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHH-HHHHh----hccChhHHHHHHHHHHHHHHHhcCC--C--cEEEEecccchHHHHHHHHHHHHHHH
Q 027450 84 AQDDLVSNMMEAAS-KEVLN----VSRDHNSYKKLLKGLIVQSLLRLKE--P--AVLLRCRKDDHHLVESVLESAKEEYA 154 (223)
Q Consensus 84 ar~~~i~~v~~~a~-e~L~~----~~~~~~~Y~~~L~~Li~ea~~~l~~--~--e~~v~~~~~D~~lv~~~~~~~~~~~~ 154 (223)
.|.+++..++...- .-+.+ +..+ .+-.+|...+.+......+ + .+.|+.. .++-+.-+..+...+.
T Consensus 58 ~k~~li~~i~~~~~~~~~~nfL~ll~en--~Rl~~l~~I~~~~~~l~~~~~~~~~a~V~SA---~~Ls~~q~~~l~~~l~ 132 (178)
T COG0712 58 DKKELLISIFKKIGDPLLQNFLRLLAEN--KRLNLLPEILEEFLKLAAESRGIVEAEVTSA---FELSDEQLTKLEAKLE 132 (178)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHc--cchhhHHHHHHHHHHHHHHhcCceEEEEEEc---CCCCHHHHHHHHHHHH
Confidence 45666776766655 33333 2223 4555555555554432221 2 2333221 2233333333334444
Q ss_pred HhhCCCCCeEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcC
Q 027450 155 QKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKK 216 (223)
Q Consensus 155 ~~~g~~~~~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~ 216 (223)
...|+ .+++...- |++++||+++.. |.-++|.|+.++|..+...+
T Consensus 133 k~~~~-~v~i~~~V--------------D~sliGG~iI~v--gd~viD~Svr~~L~~l~~~l 177 (178)
T COG0712 133 KKFGK-KVKLNNKI--------------DPSLIGGLIIKV--GDEVIDGSVRGKLKRLAKAL 177 (178)
T ss_pred HHhCC-CceEEeee--------------CHHHhCceEEEE--CCEEEechHHHHHHHHHHhc
Confidence 44443 33433321 248999999998 88899999999999876543
No 51
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=95.90 E-value=0.61 Score=36.43 Aligned_cols=43 Identities=19% Similarity=0.143 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 027450 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR 52 (223)
Q Consensus 10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~ 52 (223)
+..-....+.+|+.+|.+|...|..+++..+..++.+....+.
T Consensus 48 ~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~ 90 (147)
T TIGR01144 48 AQKKAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREERE 90 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566777788888888888888877666666555544443
No 52
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=95.87 E-value=0.36 Score=34.49 Aligned_cols=36 Identities=22% Similarity=0.107 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 027450 11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEA 46 (223)
Q Consensus 11 ~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~ 46 (223)
+.-...++.+|+.++.+|+..|..+++..+..++.+
T Consensus 8 e~~~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~ 43 (85)
T TIGR02926 8 EEDAEELIEEAEEERKQRIAEAREEARELLEEAEEE 43 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666666666666333333333
No 53
>PRK13441 F0F1 ATP synthase subunit delta; Provisional
Probab=95.72 E-value=0.18 Score=41.10 Aligned_cols=32 Identities=28% Similarity=0.260 Sum_probs=28.3
Q ss_pred CCccCceEEEecCCcEEEeccHHHHHHHHHhcCc
Q 027450 184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL 217 (223)
Q Consensus 184 ~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~l 217 (223)
++++|||++.. |.-++|.|+.++|..+...++
T Consensus 146 ~sliGG~~i~i--g~~~~D~Sik~~L~~l~~~l~ 177 (180)
T PRK13441 146 ESLIAGAVVEF--EGKRLDVTVQGRLKKIAREVL 177 (180)
T ss_pred hHHhCcEEEEE--CCEEEeHhHHHHHHHHHHHHh
Confidence 37899999998 778899999999999888775
No 54
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=95.72 E-value=0.74 Score=36.81 Aligned_cols=28 Identities=7% Similarity=0.012 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027450 10 IQQMVRFIRQEAEEKANEISVSAEEEFN 37 (223)
Q Consensus 10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~ 37 (223)
+..-....+.+|+.+|.+|..+|+++++
T Consensus 57 l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~ 84 (154)
T PRK06568 57 LFEQTNAQIKKLETLRSQMIEESNEVTK 84 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777777777777777766
No 55
>PRK09098 type III secretion system protein HrpB; Validated
Probab=95.69 E-value=0.95 Score=38.60 Aligned_cols=51 Identities=20% Similarity=0.111 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027450 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY 55 (223)
Q Consensus 5 ~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~ 55 (223)
++-.+..+..+.|+.+|+++|++|..+|+++|+..+.+=.+++..+...++
T Consensus 43 ~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~~Gy~eG~~~a~~e~ 93 (233)
T PRK09098 43 AVLAAARARAERIVAEARAQAEAILEAARREADRSARRGYAAGLRQALAEW 93 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777889999999999999999999998666555555555444444
No 56
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=95.61 E-value=1 Score=36.79 Aligned_cols=94 Identities=19% Similarity=0.179 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA 95 (223)
Q Consensus 16 ~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v~~~ 95 (223)
.-+.+|+.++.+|+..|..+++..+..++.+....+....+....+++.+ ....+-..|.++.+-.+..
T Consensus 86 ~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~e-----------k~~a~~~l~~~i~~lA~~~ 154 (184)
T PRK13455 86 RKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASA-----------EAAAVKAVRDRAVSVAVAA 154 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666554444443333332222211111111111 1112223445566666666
Q ss_pred HHHHHHhhccChhHHHHHHHHHHHHH
Q 027450 96 ASKEVLNVSRDHNSYKKLLKGLIVQS 121 (223)
Q Consensus 96 a~e~L~~~~~~~~~Y~~~L~~Li~ea 121 (223)
|..-|..-. ++.....++...|.+.
T Consensus 155 a~kil~~~l-~~~~~~~lid~~i~~l 179 (184)
T PRK13455 155 AADVIAKQM-TAADANALIDEAIKEV 179 (184)
T ss_pred HHHHHhhcC-CHHHHHHHHHHHHHHH
Confidence 665554433 2224555555555443
No 57
>PRK15322 invasion protein OrgB; Provisional
Probab=95.46 E-value=1.3 Score=36.95 Aligned_cols=106 Identities=15% Similarity=0.055 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSN 91 (223)
Q Consensus 12 ~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~ 91 (223)
.-...+.++|+.+|.+|..+|+++++ .|...+ -.+.|...+.++-..-. .-+...-..+.++..+
T Consensus 12 ~~a~~l~~qA~~kA~~ii~qA~~eaE----~ir~~A---~~~GYq~Gl~qa~~~la--------~~~a~~~~l~~~l~~~ 76 (210)
T PRK15322 12 FSAERLEQQARRRAKRILRQAEEEAE----TLRMYA---YQEGYEQGMIDALQQVA--------AYLTDNQTMAWKWMEK 76 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 34567899999999999999999998 665443 23557666555433211 1111111222366666
Q ss_pred HHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC--CcEEEEecc
Q 027450 92 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE--PAVLLRCRK 136 (223)
Q Consensus 92 v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~--~e~~v~~~~ 136 (223)
|-+.++.-|.....+| ++|-.++.+=+..++. ..+.|++-+
T Consensus 77 ie~~~r~lls~~Ld~p----d~LL~~le~Wl~~l~~~~~pL~l~lP~ 119 (210)
T PRK15322 77 IQIYARELFSAAVDHP----ETLLTVLDEWLRDFDKPEGQLFLTLPV 119 (210)
T ss_pred HHHHHHHHHHHHccCH----HHHHHHHHHHHHhCccccCceeEecCh
Confidence 7677776666666554 4666666654443333 356666644
No 58
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=95.32 E-value=1.2 Score=35.75 Aligned_cols=49 Identities=31% Similarity=0.295 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVE 63 (223)
Q Consensus 11 ~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e 63 (223)
..-...-+.+|+.++.+|...|..+++ .+.++.+.+.+.+.++....+.
T Consensus 60 ~~~~~~~l~~Ar~~a~~Ii~~A~~~a~----~~~~e~~~~a~~e~~r~~~~a~ 108 (161)
T COG0711 60 LAEYEQELEEAREQASEIIEQAKKEAE----QIAEEIKAEAEEELERIKEAAE 108 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677788888888888888887 4444444444444444443333
No 59
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=95.25 E-value=0.72 Score=32.89 Aligned_cols=44 Identities=30% Similarity=0.352 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 19 QEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRK 66 (223)
Q Consensus 19 ~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~ 66 (223)
.+|+.+++++...|+.++. .|+..++......++.....++...
T Consensus 5 k~ae~~~~~~l~~A~~ea~----~Ii~~A~~~A~~~~~~a~~~A~~ea 48 (85)
T TIGR02926 5 KKAEEDAEELIEEAEEERK----QRIAEAREEARELLEEAEEEASKLG 48 (85)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666655 5666655555555555444444433
No 60
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=95.19 E-value=1.6 Score=36.53 Aligned_cols=121 Identities=15% Similarity=0.153 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (223)
Q Consensus 14 ~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v~ 93 (223)
..-|++.|..+|.+|.-.|..+-. .++.+.......-...-..+. -....+..-.-|-...++...+.
T Consensus 43 s~~il~~A~rkA~~I~q~A~~~~~----~ll~qaqqqad~L~~~~~~~~--------E~~~L~qHV~wLve~e~lE~sLV 110 (224)
T PRK15354 43 SHAIVSSAYRKAEKIIRDAYRYQR----EQKVEQQQELACLRKNTLEKM--------EVEWLEQHVKHLQEDENQFRSLV 110 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhHHHHHHHH
Confidence 457889999999999888877633 444443322211111111111 11222222233444444444444
Q ss_pred HHHHHHHHh--------hccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHH
Q 027450 94 EAASKEVLN--------VSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVL 146 (223)
Q Consensus 94 ~~a~e~L~~--------~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~ 146 (223)
..+++++.. -.+..+-=.-+...|-.++.....++.++++|.|.+.+.+...+
T Consensus 111 ~~~~~~I~~aI~~VltaW~gQQ~isq~Li~RLa~Qv~~mA~eg~LtL~VHP~~~~am~~af 171 (224)
T PRK15354 111 DHAAHHIKNSIEQVLLAWFDQQSVDSVMCHRLARQATAMAEEGALYLRIHPEKEALMRETF 171 (224)
T ss_pred HHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCceEEEECHHHHHHHHHHH
Confidence 444444433 11221133556778888888888888999999999988776533
No 61
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=95.17 E-value=0.96 Score=33.93 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 027450 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK 58 (223)
Q Consensus 14 ~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~ 58 (223)
.+....+|++.++.+...|++++. .|+.+...+....++..
T Consensus 19 ad~~IeeAkEe~~~~i~eAr~ear----eiieeaE~eA~~~~~e~ 59 (108)
T COG2811 19 ADEEIEEAKEEAEQIIKEAREEAR----EIIEEAEEEAEKLAQEI 59 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 445556666666666666666665 66666555555444433
No 62
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=95.09 E-value=1.1 Score=37.49 Aligned_cols=34 Identities=21% Similarity=0.067 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 027450 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEA 46 (223)
Q Consensus 13 ~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~ 46 (223)
-.+..+.+|+.++.+|...|+.+++.+...++.+
T Consensus 109 ~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~ 142 (204)
T PRK09174 109 AYEQELAQARAKAHSIAQAAREAAKAKAEAERAA 142 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666665444444433
No 63
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=95.04 E-value=1.5 Score=36.34 Aligned_cols=116 Identities=16% Similarity=0.204 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKE 99 (223)
Q Consensus 20 eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v~~~a~e~ 99 (223)
.++...+.|...|+++++ .|..++........++. ....+..+.......+.+.-..++.++..+..+++..
T Consensus 3 ~~e~~i~~I~~~a~eeak----~I~~eA~~eae~i~~ea----~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~ 74 (194)
T COG1390 3 ELEKLIKKILREAEEEAE----EILEEAREEAEKIKEEA----KREAEEAIEEILRKAEKEAERERQRIISSALLEARRK 74 (194)
T ss_pred cHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888888776 77666554443332222 2222222223334444455566677777766666655
Q ss_pred HHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHH
Q 027450 100 VLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYA 154 (223)
Q Consensus 100 L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~ 154 (223)
+.. .++.+|...+...-..+. -.-++.+...+..++.++...|.
T Consensus 75 ~Le------~~ee~l~~~~~~~~e~L~-----~i~~~~~~~~l~~ll~~~~~~~~ 118 (194)
T COG1390 75 LLE------AKEEILESVFEAVEEKLR-----NIASDPEYESLQELLIEALEKLL 118 (194)
T ss_pred HHH------HHHHHHHHHHHHHHHHHH-----cCcCCcchHHHHHHHHHHHHhcC
Confidence 544 356666664444443331 22234455556666665555554
No 64
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=94.98 E-value=0.72 Score=35.71 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 027450 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ 53 (223)
Q Consensus 12 ~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~ 53 (223)
.-.+..+.+|+.++.+|...|..+++.++..++.++...+..
T Consensus 60 ~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~ 101 (140)
T PRK07353 60 AQYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQA 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777777776666666655544443
No 65
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=94.86 E-value=0.93 Score=36.53 Aligned_cols=36 Identities=25% Similarity=0.145 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 26 NEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR 65 (223)
Q Consensus 26 ~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~ 65 (223)
+++..+|+.++. .|+++++.......+....++...
T Consensus 80 e~~L~~Ar~eA~----~Ii~~A~~eAe~~~~~ii~~A~~e 115 (167)
T PRK08475 80 LKKLEEAKEKAE----LIVETAKKEAYILTQKIEKQTKDD 115 (167)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 666666555555554444444433
No 66
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=94.85 E-value=1.5 Score=34.89 Aligned_cols=46 Identities=11% Similarity=-0.010 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027450 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY 55 (223)
Q Consensus 10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~ 55 (223)
+..-....+.+|+.+|.+|...|.++++..+..++.++...+....
T Consensus 75 ~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~ 120 (156)
T CHL00118 75 LTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLL 120 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677777777777777777777666666555554444333
No 67
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=94.79 E-value=2.1 Score=35.77 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027450 42 QLVEAEKKKIRQEYERKEKQVEI 64 (223)
Q Consensus 42 ~i~~~~k~~i~~~~~~~~~~~e~ 64 (223)
.|+.++.......++....++..
T Consensus 118 ~Ii~~A~~eAe~~~e~i~~~A~~ 140 (205)
T PRK06231 118 EIIDQANYEALQLKSELEKEANR 140 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555554444444443333
No 68
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=94.72 E-value=1.7 Score=34.50 Aligned_cols=37 Identities=19% Similarity=0.135 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 027450 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKI 51 (223)
Q Consensus 15 ~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i 51 (223)
+.|..+|+..++.+..+|..+++.+..++...+...+
T Consensus 71 ~~ii~~A~~~a~~~~~~a~~~a~~~~~~~~~~a~~~I 107 (159)
T PRK09173 71 ADIVAAAEREAEALTAEAKRKTEEYVARRNKLAEQKI 107 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433444443333333
No 69
>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit. This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity.
Probab=94.71 E-value=0.48 Score=38.15 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=25.8
Q ss_pred CCccCceEEEecCCcEEEeccHHHHHHHHHhc
Q 027450 184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRK 215 (223)
Q Consensus 184 ~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~ 215 (223)
++.+||+++.. |.-.+|.|+.++|+.+...
T Consensus 142 ~~ligGi~i~~--~~~~iD~Si~~~L~~l~~~ 171 (172)
T TIGR01145 142 KDLIGGVIIRI--GDRVIDGSVRGQLKRLSRQ 171 (172)
T ss_pred HHHhCceEEEE--CCEEEehhHHHHHHHHHhh
Confidence 37899999998 7788999999999887654
No 70
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=94.63 E-value=1.8 Score=34.48 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027450 42 QLVEAEKKKIRQEYERKEKQVEI 64 (223)
Q Consensus 42 ~i~~~~k~~i~~~~~~~~~~~e~ 64 (223)
.|+++++......++....++..
T Consensus 78 ~ii~~A~~~a~~~~~~~l~~A~~ 100 (164)
T PRK14473 78 KIVAQAQERARAQEAEIIAQARR 100 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655555555544444443
No 71
>PRK00106 hypothetical protein; Provisional
Probab=94.48 E-value=3 Score=39.87 Aligned_cols=35 Identities=26% Similarity=0.221 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027450 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAE 47 (223)
Q Consensus 13 ~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~ 47 (223)
-...|+.+|+.+|++|..+|..+++..+..+..+.
T Consensus 43 ~A~~IleeAe~eAe~I~keA~~EAke~~ke~~lEa 77 (535)
T PRK00106 43 EAVNLRGKAERDAEHIKKTAKRESKALKKELLLEA 77 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777777777654444444443
No 72
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=94.37 E-value=1.1 Score=35.04 Aligned_cols=44 Identities=27% Similarity=0.345 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027450 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY 55 (223)
Q Consensus 12 ~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~ 55 (223)
+-...++.+|+.+|..+...|..++..+..++++++...++...
T Consensus 62 ~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~ 105 (141)
T PRK08476 62 HEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKY 105 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555444433
No 73
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=94.29 E-value=1.6 Score=32.28 Aligned_cols=20 Identities=0% Similarity=0.240 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 027450 86 DDLVSNMMEAASKEVLNVSR 105 (223)
Q Consensus 86 ~~~i~~v~~~a~e~L~~~~~ 105 (223)
......+...+..++..+..
T Consensus 65 ~~~~~~l~~et~~~i~~i~~ 84 (105)
T PF03179_consen 65 EQEAEELEKETEEKIEEIKK 84 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555443
No 74
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=94.26 E-value=1.6 Score=32.37 Aligned_cols=70 Identities=16% Similarity=0.139 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 19 QEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA 96 (223)
Q Consensus 19 ~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v~~~a 96 (223)
.+|+.+++++...|+.++. .|+.+++......++....++.......+. .++..+-..+...+.++-.++
T Consensus 9 k~aE~~~e~~L~~A~~Ea~----~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile----~Ak~eie~Ek~~a~~elk~ei 78 (103)
T PRK08404 9 VKAEKEAEERIEKAKEEAK----KIIRKAKEEAKKIEEEIIKKAEEEAQKLIE----KKKKEGEEEAKKILEEGEKEI 78 (103)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 4688888999999998887 888888888888888777776665444333 333344444444444444333
No 75
>PRK05758 F0F1 ATP synthase subunit delta; Validated
Probab=94.16 E-value=0.6 Score=37.69 Aligned_cols=31 Identities=26% Similarity=0.480 Sum_probs=26.9
Q ss_pred CCccCceEEEecCCcEEEeccHHHHHHHHHhcC
Q 027450 184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKK 216 (223)
Q Consensus 184 ~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~ 216 (223)
++.+||+++.. |...+|+|+.++|+.....+
T Consensus 145 ~~ligG~~i~~--~~~~~d~Si~~~L~~l~~~l 175 (177)
T PRK05758 145 PSLIGGVIIKV--GDRVIDGSVRGKLERLKDAL 175 (177)
T ss_pred hHHhCceEEEE--CCEEeehhHHHHHHHHHHHh
Confidence 37899999998 67889999999999887665
No 76
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=94.08 E-value=1.3 Score=36.16 Aligned_cols=40 Identities=13% Similarity=0.094 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 027450 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKK 49 (223)
Q Consensus 10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~ 49 (223)
+..-.+..+.+|+.++.+|+..|.++++..+..++.+...
T Consensus 84 ~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~ 123 (181)
T PRK13454 84 AEKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKADA 123 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666677777777777766666555555544433
No 77
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=93.94 E-value=2.9 Score=34.08 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027450 42 QLVEAEKKKIRQEYERKEKQVE 63 (223)
Q Consensus 42 ~i~~~~k~~i~~~~~~~~~~~e 63 (223)
.++.+++.......+....++.
T Consensus 94 ~ii~~A~~~ae~~~~~il~~A~ 115 (184)
T CHL00019 94 EIRVNGYSEIEREKENLINQAK 115 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544444444444433333
No 78
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=93.59 E-value=3.2 Score=33.45 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027450 42 QLVEAEKKKIRQEYERKEKQVE 63 (223)
Q Consensus 42 ~i~~~~k~~i~~~~~~~~~~~e 63 (223)
.|+.+++.......+....+++
T Consensus 89 ~ii~~a~~~a~~~~~~~~~~A~ 110 (174)
T PRK07352 89 RIRADAKARAEAIRAEIEKQAI 110 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555444444443333
No 79
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=93.51 E-value=3.3 Score=33.25 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027450 42 QLVEAEKKKIRQEYERKEKQ 61 (223)
Q Consensus 42 ~i~~~~k~~i~~~~~~~~~~ 61 (223)
.|+.++.......++....+
T Consensus 80 ~Ii~~A~~~a~~~~~~~~~~ 99 (167)
T PRK14475 80 AMLAAAKADARRMEAEAKEK 99 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555554444444433333
No 80
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=93.49 E-value=3.4 Score=33.35 Aligned_cols=22 Identities=9% Similarity=0.092 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027450 42 QLVEAEKKKIRQEYERKEKQVE 63 (223)
Q Consensus 42 ~i~~~~k~~i~~~~~~~~~~~e 63 (223)
.|+.+++.......+....++.
T Consensus 86 ~ii~~A~~ea~~~~~~~~~~A~ 107 (173)
T PRK13460 86 AIVAEAKSDALKLKNKLLEETN 107 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554444444433333
No 81
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=93.49 E-value=0.97 Score=34.29 Aligned_cols=41 Identities=29% Similarity=0.245 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 027450 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR 52 (223)
Q Consensus 12 ~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~ 52 (223)
.-.+..+.+|+.++.+|+..|..+++..+..++.+....+.
T Consensus 54 ~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~ 94 (132)
T PF00430_consen 54 AEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAE 94 (132)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666555555544444433
No 82
>CHL00119 atpD ATP synthase CF1 delta subunit; Validated
Probab=93.33 E-value=1.1 Score=36.55 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=26.6
Q ss_pred CCccCceEEEecCCcEEEeccHHHHHHHHHhcC
Q 027450 184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKK 216 (223)
Q Consensus 184 ~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~ 216 (223)
++.+||+++.. |.-.+|+|+.++|+.....+
T Consensus 149 ~~ligGi~i~~--g~~~~D~Si~~~L~~l~~~l 179 (184)
T CHL00119 149 PSLIGGFLIKI--GSKVIDTSIKGQLKQLASHL 179 (184)
T ss_pred hHHhCcEEEEE--CCEEEeHhHHHHHHHHHHHH
Confidence 37899999998 77889999999999877654
No 83
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=93.31 E-value=3.6 Score=33.21 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 41 LQLVEAEKKKIRQEYERKEKQVEIR 65 (223)
Q Consensus 41 ~~i~~~~k~~i~~~~~~~~~~~e~~ 65 (223)
..|+++++.......+....+++.+
T Consensus 87 ~~ii~~a~~~a~~~~~~~~~~A~~e 111 (173)
T PRK13453 87 QKILEDAKVQARQQQEQIIHEANVR 111 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777666666665555544443
No 84
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=93.31 E-value=5.1 Score=34.87 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=21.5
Q ss_pred cCceEEEec----CCcEEEec---cHHHHHHHHHhcCchhh
Q 027450 187 SGGVVVASR----DGKIVCEN---TLDARLDVVFRKKLPEV 220 (223)
Q Consensus 187 ~GGvvl~s~----dg~I~vdn---Tle~RL~~~~~~~lp~I 220 (223)
.+|+-+... .|+.+|.. .+|++++..|+.+...+
T Consensus 234 ~~~i~I~~D~~l~~GgcvIet~~G~IDasi~tqLe~l~~~L 274 (281)
T PRK06669 234 EEHLKIYEDDAISKGGCVIETDFGNIDARIDTQLKQLKEKL 274 (281)
T ss_pred CCCeEEEECCCCCCCCeEEEcCCCeeeccHHHHHHHHHHHH
Confidence 456666654 37777754 56777777777665444
No 85
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=93.29 E-value=3.4 Score=32.77 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 42 QLVEAEKKKIRQEYERKEKQVEIR 65 (223)
Q Consensus 42 ~i~~~~k~~i~~~~~~~~~~~e~~ 65 (223)
.|+++++.......+....++..+
T Consensus 75 ~ii~~a~~~a~~~~~~i~~~A~~e 98 (159)
T PRK13461 75 KIVEEYKSKAENVYEEIVKEAHEE 98 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666555555555544444443
No 86
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=93.21 E-value=2.5 Score=31.13 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 027450 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER 57 (223)
Q Consensus 10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~ 57 (223)
.++....|..+|+.....++.+|..+|+ ..+...+......|..
T Consensus 12 AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~----~ei~~~r~~~e~~~~~ 55 (105)
T PF03179_consen 12 AEKEAQEIVEEARKEREQRLKQAKEEAE----KEIEEFRAEAEEEFKE 55 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777776 3333334444444433
No 87
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=93.08 E-value=3.9 Score=32.97 Aligned_cols=20 Identities=5% Similarity=0.114 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027450 42 QLVEAEKKKIRQEYERKEKQ 61 (223)
Q Consensus 42 ~i~~~~k~~i~~~~~~~~~~ 61 (223)
.|+.++........+....+
T Consensus 88 ~ii~~A~~~a~~~~~~~~~~ 107 (175)
T PRK14472 88 KIIREGKEYAEKLRAEITEK 107 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45554444444433333333
No 88
>PRK13429 F0F1 ATP synthase subunit delta; Provisional
Probab=92.99 E-value=2.3 Score=34.38 Aligned_cols=30 Identities=30% Similarity=0.369 Sum_probs=26.3
Q ss_pred CccCceEEEecCCcEEEeccHHHHHHHHHhcC
Q 027450 185 SCSGGVVVASRDGKIVCENTLDARLDVVFRKK 216 (223)
Q Consensus 185 ~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~ 216 (223)
+.+||+++.. |.-.+|+|+.++|+.+...+
T Consensus 148 sligG~~i~~--~~~~iD~Si~~~L~~l~~~l 177 (181)
T PRK13429 148 SLIGGVVVKI--GDKVLDASVRTQLRRLKETL 177 (181)
T ss_pred hhhCceEEEE--CCEEEehhHHHHHHHHHHHH
Confidence 7899999998 66789999999999887654
No 89
>PRK08474 F0F1 ATP synthase subunit delta; Validated
Probab=92.64 E-value=0.68 Score=37.55 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=20.8
Q ss_pred cCceEEEecCCcEEEeccHHHHHHHHHhcCchh
Q 027450 187 SGGVVVASRDGKIVCENTLDARLDVVFRKKLPE 219 (223)
Q Consensus 187 ~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~ 219 (223)
+|||++.. |..++|.|+ .|+.+...+...
T Consensus 143 IGG~ii~i--gd~v~D~s~--~l~~~~~~~~~~ 171 (176)
T PRK08474 143 YDGIKVEV--DDLGVEVSF--SKDRLKNQLIEY 171 (176)
T ss_pred CCCEEEEE--CCEEEEeee--eHHHHHHHHHHH
Confidence 99999998 888899954 555555544433
No 90
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=92.24 E-value=5.7 Score=32.75 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 027450 21 AEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ 53 (223)
Q Consensus 21 A~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~ 53 (223)
+...|.+|...|+++|+ +|+..+..+.+.
T Consensus 28 ~~~~a~~IL~~A~~qA~----~Il~~Ae~eAe~ 56 (191)
T PF06188_consen 28 AQQQAREILEDARQQAE----QILQQAEEEAEA 56 (191)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 56778888888888887 888777655443
No 91
>PF00213 OSCP: ATP synthase delta (OSCP) subunit; InterPro: IPR000711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta in bacterial and chloroplast ATPase, or OSCP (oligomycin sensitivity conferral protein) in mitochondrial ATPase (note that in mitochondria there is a different delta subunit, IPR001469 from INTERPRO). The OSCP/delta subunit appears to be part of the peripheral stalk that holds the F1 complex alpha3beta3 catalytic core stationary against the torque of the rotating central stalk, and links subunit A of the F0 complex with the F1 complex. In mitochondria, the peripheral stalk consists of OSCP, as well as F0 components F6, B and D. In bacteria and chloroplasts the peripheral stalks have different subunit compositions: delta and two copies of F0 component B (bacteria), or delta and F0 components B and B' (chloroplasts) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport; PDB: 2A7U_B 1ABV_A 2WSS_S 2BO5_A 2JMX_A.
Probab=92.03 E-value=0.046 Score=43.96 Aligned_cols=32 Identities=25% Similarity=0.522 Sum_probs=11.9
Q ss_pred CCCCccCceEEEecCCcEEEeccHHHHHHHHHhc
Q 027450 182 HGPSCSGGVVVASRDGKIVCENTLDARLDVVFRK 215 (223)
Q Consensus 182 ~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~ 215 (223)
.|++++|||++.. |..++|.|+.++|+.+..+
T Consensus 140 vD~sLigG~~i~~--~~~~iD~Sv~~~L~~l~~~ 171 (172)
T PF00213_consen 140 VDPSLIGGFIIEV--GDKVIDASVKSRLEQLKKE 171 (172)
T ss_dssp -------------------TTTTTTTTTTTT-TT
T ss_pred EccccCcEEEEEE--CCEEEehhHHHHHHHHHhc
Confidence 3468999999998 8888999999999876554
No 92
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=91.98 E-value=12 Score=35.75 Aligned_cols=34 Identities=24% Similarity=0.080 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027450 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAE 47 (223)
Q Consensus 14 ~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~ 47 (223)
...++.+|+.+|+.|..+|..+++..+..+..+.
T Consensus 23 a~~~l~~Ae~eAe~i~keA~~eAke~~ke~~~Ea 56 (514)
T TIGR03319 23 AEKKLGSAEELAKRIIEEAKKEAETLKKEALLEA 56 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666654444444333
No 93
>PRK00106 hypothetical protein; Provisional
Probab=91.71 E-value=13 Score=35.68 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCh--hHHHHHHHHHHHHHH
Q 027450 80 KVLQAQDDLVSNMMEAASKEVLNVSRDH--NSYKKLLKGLIVQSL 122 (223)
Q Consensus 80 ~~L~ar~~~i~~v~~~a~e~L~~~~~~~--~~Y~~~L~~Li~ea~ 122 (223)
+-+..+..-++.+..+...+|..+..-+ .....+|..+=.++-
T Consensus 139 eeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak~~l~~~~~~~~~ 183 (535)
T PRK00106 139 KHIDEREEQVEKLEEQKKAELERVAALSQAEAREIILAETENKLT 183 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666665543322 135555555544443
No 94
>PRK12704 phosphodiesterase; Provisional
Probab=91.47 E-value=13 Score=35.41 Aligned_cols=28 Identities=32% Similarity=0.235 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027450 15 RFIRQEAEEKANEISVSAEEEFNIEKLQ 42 (223)
Q Consensus 15 ~~I~~eA~~ka~eI~~~A~~ea~~ek~~ 42 (223)
..+..+|+.+|++|..+|+.+++..+..
T Consensus 30 ~~~l~~Ae~eAe~I~keA~~eAke~~ke 57 (520)
T PRK12704 30 EAKIKEAEEEAKRILEEAKKEAEAIKKE 57 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666655555433333
No 95
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=91.45 E-value=8.4 Score=33.07 Aligned_cols=50 Identities=6% Similarity=-0.007 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHh-----hccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecc
Q 027450 86 DDLVSNMMEAASKEVLN-----VSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRK 136 (223)
Q Consensus 86 ~~~i~~v~~~a~e~L~~-----~~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~ 136 (223)
.+.+..++..+...+.. +.-+| .+.+++..........++. ..+.|+..|
T Consensus 158 ~e~i~~lv~~al~~l~~~~~i~I~v~p-~d~~~v~~~~~~l~~~~~~~~~i~i~~D~ 213 (255)
T TIGR03825 158 KNAFQALVRQVLSEVREFDEVSIYVHP-HWYERVAAQKDELQSILPACEHLAVYPDE 213 (255)
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEECH-HHHHHHHHhHHHHHhhcCCCCceEEEeCC
Confidence 45666777777777654 22256 4455555555444444443 345555444
No 96
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=90.96 E-value=9.2 Score=32.63 Aligned_cols=15 Identities=0% Similarity=0.211 Sum_probs=7.3
Q ss_pred EecccchHHHHHHHH
Q 027450 133 RCRKDDHHLVESVLE 147 (223)
Q Consensus 133 ~~~~~D~~lv~~~~~ 147 (223)
-+++.....+...+.
T Consensus 186 ~l~~~~~~~i~~~l~ 200 (246)
T TIGR03321 186 ELPEEQREQIRDTIR 200 (246)
T ss_pred CCCHHHHHHHHHHHH
Confidence 334555555554444
No 97
>PRK12704 phosphodiesterase; Provisional
Probab=90.90 E-value=15 Score=35.03 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCh--hHHHHHHHHHHHHH
Q 027450 80 KVLQAQDDLVSNMMEAASKEVLNVSRDH--NSYKKLLKGLIVQS 121 (223)
Q Consensus 80 ~~L~ar~~~i~~v~~~a~e~L~~~~~~~--~~Y~~~L~~Li~ea 121 (223)
+-|..+..-++.+..+...+|.++..-+ .....+|..+=.++
T Consensus 124 ~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~~l~~~~~~~~ 167 (520)
T PRK12704 124 QELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEA 167 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4455555555566666666665543321 13444555444443
No 98
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=90.68 E-value=8 Score=31.43 Aligned_cols=9 Identities=11% Similarity=0.501 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 027450 140 HLVESVLES 148 (223)
Q Consensus 140 ~lv~~~~~~ 148 (223)
.++...+.+
T Consensus 170 ~lid~~i~~ 178 (184)
T PRK13455 170 ALIDEAIKE 178 (184)
T ss_pred HHHHHHHHH
Confidence 444554443
No 99
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=90.12 E-value=11 Score=32.32 Aligned_cols=25 Identities=0% Similarity=0.135 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 39 EKLQLVEAEKKKIRQEYERKEKQVE 63 (223)
Q Consensus 39 ek~~i~~~~k~~i~~~~~~~~~~~e 63 (223)
+...|+++++.......+..+.++.
T Consensus 72 ea~~ii~~A~~eA~~~~~~il~~A~ 96 (250)
T PRK14474 72 QRASFMAQAQEAADEQRQHLLNEAR 96 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555544444444333
No 100
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=90.07 E-value=7.5 Score=30.17 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 26 NEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEY 70 (223)
Q Consensus 26 ~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~ 70 (223)
+....+|+.++. .|+++++.......+....++.......+
T Consensus 53 ~~~l~~A~~ea~----~i~~~a~~~a~~~~~~~~~~a~~e~~~~~ 93 (147)
T TIGR01144 53 QVILKEAKDEAQ----EIIENANKRGSEILEEAKAEAREEREKIK 93 (147)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444 77777777776666666555554443333
No 101
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=89.99 E-value=7.9 Score=30.32 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027450 42 QLVEAEKKKIRQEYERKEKQVE 63 (223)
Q Consensus 42 ~i~~~~k~~i~~~~~~~~~~~e 63 (223)
.|++++.......++....++.
T Consensus 74 ~i~~~a~~ea~~~~~~~~~~a~ 95 (156)
T PRK05759 74 EIIEQAKKRAAQIIEEAKAEAE 95 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555544444444433
No 102
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=89.94 E-value=8.5 Score=30.60 Aligned_cols=22 Identities=0% Similarity=0.149 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027450 42 QLVEAEKKKIRQEYERKEKQVE 63 (223)
Q Consensus 42 ~i~~~~k~~i~~~~~~~~~~~e 63 (223)
.|+.+++......++....+++
T Consensus 78 ~ii~~A~~~a~~~~~~~~~~A~ 99 (164)
T PRK14471 78 AILKEAREIKEKMIADAKEEAQ 99 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554444444433333
No 103
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=88.81 E-value=6.9 Score=29.50 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 23 EKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR 65 (223)
Q Consensus 23 ~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~ 65 (223)
..+++....|+.++. .++.+++......++....+++..
T Consensus 54 ~e~~~~l~~a~~ea~----~i~~~a~~~a~~~~~~~~~ea~~~ 92 (132)
T PF00430_consen 54 AEYEEKLAEAREEAQ----EIIEEAKEEAEKEKEEILAEAEKE 92 (132)
T ss_dssp HHHHHHHHHHHHHHC----HHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666655 777777766666666655554443
No 104
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=88.45 E-value=13 Score=30.76 Aligned_cols=27 Identities=30% Similarity=0.215 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027450 16 FIRQEAEEKANEISVSAEEEFNIEKLQ 42 (223)
Q Consensus 16 ~I~~eA~~ka~eI~~~A~~ea~~ek~~ 42 (223)
.-+..|+.+|..|...|+.+++..+..
T Consensus 27 ~~~~~A~~~A~~i~~~A~~eAe~~~ke 53 (201)
T PF12072_consen 27 KKLEQAEKEAEQILEEAEREAEAIKKE 53 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555566666655555543333
No 105
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=88.32 E-value=14 Score=30.85 Aligned_cols=17 Identities=12% Similarity=0.307 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027450 42 QLVEAEKKKIRQEYERK 58 (223)
Q Consensus 42 ~i~~~~k~~i~~~~~~~ 58 (223)
.|+++.+.......+..
T Consensus 123 ~Ii~~Ar~ea~~~~e~~ 139 (204)
T PRK09174 123 SIAQAAREAAKAKAEAE 139 (204)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444433333
No 106
>KOG1662 consensus Mitochondrial F1F0-ATP synthase, subunit OSCP/ATP5 [Energy production and conversion]
Probab=88.24 E-value=2.2 Score=35.47 Aligned_cols=29 Identities=28% Similarity=0.526 Sum_probs=25.2
Q ss_pred CCccCceEEEecCCcEEEeccHHHHHHHHHh
Q 027450 184 PSCSGGVVVASRDGKIVCENTLDARLDVVFR 214 (223)
Q Consensus 184 ~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~ 214 (223)
++++||+||+. |.-.||-|+.+|++..-.
T Consensus 176 PSI~GGliVei--GdK~vDmSI~tr~q~l~~ 204 (210)
T KOG1662|consen 176 PSIIGGLIVEI--GDKYVDMSIKTRLQKLNK 204 (210)
T ss_pred hhhhcceEEEE--cCeeEeeeHHHHHHHHHH
Confidence 48999999998 777899999999987654
No 107
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=88.24 E-value=10 Score=29.19 Aligned_cols=24 Identities=0% Similarity=0.030 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 42 QLVEAEKKKIRQEYERKEKQVEIR 65 (223)
Q Consensus 42 ~i~~~~k~~i~~~~~~~~~~~e~~ 65 (223)
.|++++........+.....+..+
T Consensus 75 ~i~~~a~~~a~~~~~~~~~~a~~e 98 (140)
T PRK07353 75 AVIAEAEAEADKLAAEALAEAQAE 98 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666655554444433
No 108
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=85.73 E-value=16 Score=28.90 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027450 42 QLVEAEKKKIRQEYERKEKQVE 63 (223)
Q Consensus 42 ~i~~~~k~~i~~~~~~~~~~~e 63 (223)
.|+++++.......+....+++
T Consensus 92 ~ii~~A~~~a~~~~~~~~~~A~ 113 (156)
T CHL00118 92 LEITQSQKEAKEIVENELKQAQ 113 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5665555555554444443333
No 109
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=83.80 E-value=19 Score=28.09 Aligned_cols=16 Identities=38% Similarity=0.372 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 027450 22 EEKANEISVSAEEEFN 37 (223)
Q Consensus 22 ~~ka~eI~~~A~~ea~ 37 (223)
....+++...|+.++.
T Consensus 61 ~~e~e~~l~~Ar~eA~ 76 (141)
T PRK08476 61 EHEIETILKNAREEAN 76 (141)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344445555555555
No 110
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=82.21 E-value=24 Score=28.17 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 42 QLVEAEKKKIRQEYERKEKQVEIR 65 (223)
Q Consensus 42 ~i~~~~k~~i~~~~~~~~~~~e~~ 65 (223)
.|++.++...+...+....+++..
T Consensus 76 ~Ii~~A~~~a~~~~~e~~~~a~~e 99 (161)
T COG0711 76 EIIEQAKKEAEQIAEEIKAEAEEE 99 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655555544444443
No 111
>PRK10780 periplasmic chaperone; Provisional
Probab=81.70 E-value=25 Score=28.04 Aligned_cols=53 Identities=11% Similarity=0.233 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHH
Q 027450 81 VLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLE 147 (223)
Q Consensus 81 ~L~ar~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~ 147 (223)
+...++++...++..+.+-+..+.... .|.-+|. ...++|.+|. .++...++.
T Consensus 110 ~~~~~~e~~~~i~~ki~~ai~~vak~~-gy~~Vld------------~~~v~Y~~~~-~DIT~~Vik 162 (165)
T PRK10780 110 RRRRSNEERNKILTRIQTAVKSVANKQ-GYDLVVD------------ANAVAYNSSD-KDITADVLK 162 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeEEEe------------CCceeeeCCC-CCchHHHHH
Confidence 334556667777777777777776654 5664442 1237888774 666666654
No 112
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=80.05 E-value=29 Score=27.77 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHhc
Q 027450 109 SYKKLLKGLIVQSLLRL 125 (223)
Q Consensus 109 ~Y~~~L~~Li~ea~~~l 125 (223)
.|.+-|..|...-+..+
T Consensus 125 ~~~~~~i~~~~~i~~k~ 141 (155)
T PRK06569 125 NKSEAIIKLAVNIIEKI 141 (155)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 47777777766665544
No 113
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=79.29 E-value=30 Score=27.58 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027450 42 QLVEAEKKKIRQEYERKEKQV 62 (223)
Q Consensus 42 ~i~~~~k~~i~~~~~~~~~~~ 62 (223)
.|+.+++.......+....++
T Consensus 74 ~Ii~~A~~~a~~~~~ea~~eA 94 (154)
T PRK06568 74 QMIEESNEVTKKIIQEKTKEI 94 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666555544444443333
No 114
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=79.28 E-value=32 Score=27.91 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027450 42 QLVEAEKKKIRQEYERKEK 60 (223)
Q Consensus 42 ~i~~~~k~~i~~~~~~~~~ 60 (223)
.|+++.+.......+....
T Consensus 101 ~ii~~A~~ea~~~~~~~~~ 119 (181)
T PRK13454 101 RIVAETRAEIQAELDVAIA 119 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555544444444333
No 115
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=74.91 E-value=80 Score=30.15 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 13 MVRFIRQEAEEKANEISVSAEEEF 36 (223)
Q Consensus 13 ~~~~I~~eA~~ka~eI~~~A~~ea 36 (223)
-...|..+|..+|++...++..++
T Consensus 33 eAe~i~keA~~eAke~~ke~~~Ea 56 (514)
T TIGR03319 33 LAKRIIEEAKKEAETLKKEALLEA 56 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333
No 116
>PRK12705 hypothetical protein; Provisional
Probab=73.57 E-value=86 Score=29.94 Aligned_cols=28 Identities=29% Similarity=0.178 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027450 10 IQQMVRFIRQEAEEKANEISVSAEEEFN 37 (223)
Q Consensus 10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~ 37 (223)
+.+-...|..+|+.+|+.++.+|.-++.
T Consensus 31 ~~~~a~~~~~~a~~~a~~~~~~~~~~~~ 58 (508)
T PRK12705 31 LAKEAERILQEAQKEAEEKLEAALLEAK 58 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666677776666666555543
No 117
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=64.94 E-value=1.2e+02 Score=28.21 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 027450 20 EAEEKANEISVSAEEEFN 37 (223)
Q Consensus 20 eA~~ka~eI~~~A~~ea~ 37 (223)
||+..+.+|+.+|+.++.
T Consensus 267 eAeayan~iip~A~gea~ 284 (419)
T PRK10930 267 EAEAYTNEVQPRANGQAQ 284 (419)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555544
No 118
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=60.95 E-value=78 Score=24.68 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 027450 21 AEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ 53 (223)
Q Consensus 21 A~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~ 53 (223)
+-.+|.+|.+.|+++++ +|+.++..+.+.
T Consensus 11 ~~~~A~~il~~A~~~a~----~i~~~A~~~~e~ 39 (166)
T TIGR02499 11 ALAQAQAILAAARQRAE----AILADAEEEAEA 39 (166)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 44589999999999988 888887665543
No 119
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=54.80 E-value=31 Score=23.30 Aligned_cols=13 Identities=46% Similarity=0.851 Sum_probs=10.6
Q ss_pred CccCceEEEecCCcE
Q 027450 185 SCSGGVVVASRDGKI 199 (223)
Q Consensus 185 ~~~GGvvl~s~dg~I 199 (223)
.+.||+|++ ||+.
T Consensus 35 ~~~GGvV~e--DgR~ 47 (62)
T PF15513_consen 35 RLTGGVVME--DGRH 47 (62)
T ss_pred eEeccEEEe--CCCE
Confidence 678999999 4774
No 120
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=53.90 E-value=1.1e+02 Score=24.19 Aligned_cols=53 Identities=15% Similarity=0.076 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027450 3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY 55 (223)
Q Consensus 3 ~~~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~ 55 (223)
.+||-=-+..|-+..+++..+...++.....++.+.-..++.+..+.+.++-.
T Consensus 22 ~DDPILil~TiNe~ll~~~~~aq~~~l~~fk~elE~~~~~w~~dak~kAEkiL 74 (144)
T PF11657_consen 22 RDDPILILQTINERLLEDSAKAQQEQLDQFKEELEEIASRWGEDAKEKAEKIL 74 (144)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445556666777777777777777777777555666666665554433
No 121
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=52.50 E-value=1.4e+02 Score=25.19 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027450 4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFN 37 (223)
Q Consensus 4 ~~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~ 37 (223)
.++++-++.+.. |+..+...+.+|+.+++
T Consensus 149 ~~v~~a~~~~~~-----a~q~~~~~~~~ae~~~~ 177 (261)
T TIGR01933 149 EEVKEAFDDVII-----AREDEERYINEAEAYAN 177 (261)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 345544554444 23333455555554433
No 122
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=49.93 E-value=1.8e+02 Score=25.66 Aligned_cols=19 Identities=53% Similarity=0.489 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027450 17 IRQEAEEKANEISVSAEEE 35 (223)
Q Consensus 17 I~~eA~~ka~eI~~~A~~e 35 (223)
.+.+|+..|..|..+|+.+
T Consensus 228 ~r~ege~~a~~i~a~A~~e 246 (317)
T TIGR01932 228 HRSQGEEKAEEILGKAEYE 246 (317)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 123
>PRK06937 type III secretion system protein; Reviewed
Probab=45.34 E-value=1.7e+02 Score=23.99 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 027450 21 AEEKANEISVSAEEEFNIEKLQLVEAEKK 49 (223)
Q Consensus 21 A~~ka~eI~~~A~~ea~~ek~~i~~~~k~ 49 (223)
+--.|++|.+.|+++++ +|+.++..
T Consensus 28 ~~~~A~~il~~A~~~A~----~i~~~A~~ 52 (204)
T PRK06937 28 SLLSAEELVEAARQRAE----EIEAEAQE 52 (204)
T ss_pred HHhhHHHHHHHHHHHHH----HHHHHHHH
Confidence 44567899999999988 88777644
No 124
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=42.88 E-value=93 Score=20.24 Aligned_cols=39 Identities=18% Similarity=0.479 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 027450 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKI 51 (223)
Q Consensus 9 ~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i 51 (223)
-+++.++-+...-+++-.||...-..||+ .|+......+
T Consensus 8 ~~d~yI~~Lk~kLd~Kk~Eil~~ln~EY~----kiLk~r~~~l 46 (56)
T PF08112_consen 8 TIDKYISILKSKLDEKKSEILSNLNMEYE----KILKQRRKEL 46 (56)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 37788888888888888888888888776 7776654443
No 125
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=42.68 E-value=2.9e+02 Score=29.49 Aligned_cols=49 Identities=18% Similarity=0.179 Sum_probs=34.3
Q ss_pred hccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHH
Q 027450 103 VSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEE 152 (223)
Q Consensus 103 ~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~ 152 (223)
++.++ +--.-|..-|.+.+..|..=+.+++-.+.|...++.+..++...
T Consensus 1506 lp~tp-eqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a 1554 (1758)
T KOG0994|consen 1506 LPLTP-EQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERA 1554 (1758)
T ss_pred CCCCH-HHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 45555 45555667788888888765667777888888888877765443
No 126
>PRK06328 type III secretion system protein; Validated
Probab=42.49 E-value=2.1e+02 Score=24.10 Aligned_cols=115 Identities=10% Similarity=0.161 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEE-FNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKV 81 (223)
Q Consensus 3 ~~~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~e-a~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~ 81 (223)
..++=.....-.+.|..+|+++++.|+.+|.++ |+.-+.... +....+...+.....+.+ .....-.+..+| ++
T Consensus 31 A~~il~~a~~~ae~i~~ea~~e~E~i~eeA~~eGy~eG~~~~~-~~~~~l~~~~~~~~~~~e---~~lv~Lal~ia~-kV 105 (223)
T PRK06328 31 AQELLEKTKEDSEAYTQETHEECEKLREEAKNQGFKEGSKAWS-KQLAFLEEETQKLREQVK---EALVPLAIASVK-KI 105 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-HH
Confidence 345555667778889999999999999988776 332222111 111122222211111111 112233444455 44
Q ss_pred HH----HHHHHHHHHHHHHHHHHHh-----hccChhHHHHHHHHHHHHHHH
Q 027450 82 LQ----AQDDLVSNMMEAASKEVLN-----VSRDHNSYKKLLKGLIVQSLL 123 (223)
Q Consensus 82 L~----ar~~~i~~v~~~a~e~L~~-----~~~~~~~Y~~~L~~Li~ea~~ 123 (223)
+. ...+.|-.++..+...+.. +.-+| .+.+++.....+-..
T Consensus 106 i~~el~~d~e~il~lV~~aL~~l~~~~~v~I~VnP-~D~~~v~~~~~~l~~ 155 (223)
T PRK06328 106 IGKELELHPETIVSIIANSLKELTQHKRIIIHVNP-KDLAIVEKSRPELKK 155 (223)
T ss_pred HHHHHhhCHHHHHHHHHHHHHhcccCCceEEEECH-HHHHHHHHHHHHHHH
Confidence 43 3356666777777777755 23356 455566655544333
No 127
>PF07095 IgaA: Intracellular growth attenuator protein IgaA; InterPro: IPR010771 This family consists of several bacterial intracellular growth attenuator (IgaA) proteins. IgaA is involved in negative control of bacterial proliferation within fibroblasts. IgaA is homologous to the Escherichia coli YrfF and Proteus mirabilis UmoB proteins. Whereas the biological function of YrfF is currently unknown, UmoB has been shown elsewhere to act as a positive regulator of FlhDC, the master regulator of flagella and swarming. FlhDC has been shown to repress cell division during P. mirabilis swarming, suggesting that UmoB could repress cell division via FlhDC. This biological function, if maintained in Salmonella enterica, could sustain a putative negative control of cell division and growth exerted by IgaA in intracellular bacteria [].; GO: 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=37.59 E-value=72 Score=31.50 Aligned_cols=84 Identities=18% Similarity=0.303 Sum_probs=51.2
Q ss_pred HHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHH-hhCCCCCeEEeccccCCCC
Q 027450 96 ASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQ-KLQVHPPEIIVDHHIYLPP 174 (223)
Q Consensus 96 a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~~-~~g~~~~~i~id~~~~L~~ 174 (223)
.+..|.++...+ ++..+++ ....| .-+.+.|-.+|.-.+.+++++...-..|-- .+-+ . ...|+.
T Consensus 506 LKnALVNLgna~-dW~~Lvk-rA~sG----~L~G~nVLLRpvSAeaLe~LV~~~t~~f~~rE~~r------a--a~~LnS 571 (705)
T PF07095_consen 506 LKNALVNLGNAK-DWSALVK-RAQSG----KLDGVNVLLRPVSAEALENLVNTATSSFIYRETRR------A--AQALNS 571 (705)
T ss_pred HHHHHhccCCcc-cHHHHHH-HHhcC----CcCCceEEeehhhHHHHHHHhcccchHHHHHHHHH------H--HHHhcC
Confidence 455566776443 5666555 22222 223567778899999999988876555521 1100 0 122333
Q ss_pred CCCCCCCCCCCccCceEEEecCCcEEEec
Q 027450 175 GPGHHNAHGPSCSGGVVVASRDGKIVCEN 203 (223)
Q Consensus 175 ~~~~~~~~~~~~~GGvvl~s~dg~I~vdn 203 (223)
+| -|||++.|..|+=.||.
T Consensus 572 p~----------PGGfLi~sdEg~qLV~~ 590 (705)
T PF07095_consen 572 PP----------PGGFLIISDEGKQLVDH 590 (705)
T ss_pred CC----------CCceEEEecCCcccccC
Confidence 22 59999999999987775
No 128
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=37.24 E-value=2e+02 Score=24.40 Aligned_cols=8 Identities=13% Similarity=0.393 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 027450 5 DVSKQIQQ 12 (223)
Q Consensus 5 ~~~~~l~~ 12 (223)
++++-++.
T Consensus 177 ~i~~a~~~ 184 (266)
T cd03404 177 EVQDAFDD 184 (266)
T ss_pred HHHHHHHH
Confidence 34444443
No 129
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=37.06 E-value=2.4e+02 Score=23.21 Aligned_cols=28 Identities=32% Similarity=0.290 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027450 10 IQQMVRFIRQEAEEKANEISVSAEEEFN 37 (223)
Q Consensus 10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~ 37 (223)
..+-...|+.+|+.+|+.+..+|.-++.
T Consensus 32 A~~~A~~i~~~A~~eAe~~~ke~~~eak 59 (201)
T PF12072_consen 32 AEKEAEQILEEAEREAEAIKKEAELEAK 59 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777777777776666666555
No 130
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=35.89 E-value=12 Score=28.21 Aligned_cols=23 Identities=43% Similarity=0.459 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 027450 15 RFIRQEAEEKANEISVSAEEEFN 37 (223)
Q Consensus 15 ~~I~~eA~~ka~eI~~~A~~ea~ 37 (223)
..+...|+..|+.|...|+.+++
T Consensus 77 ~~~~~~A~~eA~~i~~~A~~~a~ 99 (131)
T PF05103_consen 77 DEIKAEAEEEAEEIIEEAQKEAE 99 (131)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444
No 131
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=35.52 E-value=3.5e+02 Score=24.83 Aligned_cols=44 Identities=16% Similarity=0.310 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 027450 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR 52 (223)
Q Consensus 9 ~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~ 52 (223)
..+-+...++.+|..+++++..+--..|+.+++......+....
T Consensus 81 ek~d~~~klk~~~~p~~deL~~~ll~rY~~eyn~y~~~K~k~~~ 124 (424)
T KOG2880|consen 81 EKEDIRKKLKEEAFPRIDELKAKLLKRYNVEYNEYDHSKKKNLA 124 (424)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHHhhhHH
Confidence 34556667778999999999998888888888787776554433
No 132
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=34.16 E-value=4e+02 Score=25.05 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=16.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 027450 32 AEEEFNIEKLQLVEAEKKKIRQEYERK 58 (223)
Q Consensus 32 A~~ea~~ek~~i~~~~k~~i~~~~~~~ 58 (223)
|+.||+ -..+|+.....+++++|..+
T Consensus 376 ARrEAE-~LqrI~~aK~~k~EEEYas~ 401 (446)
T PF07227_consen 376 ARREAE-GLQRIALAKSEKIEEEYASR 401 (446)
T ss_pred HHHHHH-HHHHHHHHhHHHHHHHHHHH
Confidence 555555 23466666677788888655
No 133
>PRK12705 hypothetical protein; Provisional
Probab=32.28 E-value=4.6e+02 Score=25.12 Aligned_cols=39 Identities=18% Similarity=0.128 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 027450 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQL 43 (223)
Q Consensus 5 ~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i 43 (223)
+.+++.+.+.....-+|++++..++.+++++++..+..+
T Consensus 41 ~a~~~a~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~~ 79 (508)
T PRK12705 41 EAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREEL 79 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677777777777777777777776555444
No 134
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=31.76 E-value=88 Score=29.83 Aligned_cols=17 Identities=29% Similarity=0.731 Sum_probs=13.7
Q ss_pred CccCceEEEecCCcEEE
Q 027450 185 SCSGGVVVASRDGKIVC 201 (223)
Q Consensus 185 ~~~GGvvl~s~dg~I~v 201 (223)
+.-||||+.|+|.++++
T Consensus 749 ey~GgVi~VsHDeRLi~ 765 (807)
T KOG0066|consen 749 EYNGGVIMVSHDERLIV 765 (807)
T ss_pred hccCcEEEEecccceee
Confidence 45699999999998764
No 135
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=30.02 E-value=40 Score=26.10 Aligned_cols=46 Identities=13% Similarity=0.252 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHH
Q 027450 109 SYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYA 154 (223)
Q Consensus 109 ~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~ 154 (223)
.+..+++-++.-|+..++++-++-|+.|.|.+++..+-+++...|-
T Consensus 4 ~w~~W~K~~~~G~~ii~~G~~l~~y~tPTeEeL~~r~sPELrkr~~ 49 (128)
T PF07960_consen 4 NWRRWAKMLVAGAVIIGGGPALVKYTTPTEEELFKRYSPELRKRYL 49 (128)
T ss_pred hHHHHHHHHHhcceeEeechHHheecCCCHHHHHHhcCHHHHHHHH
Confidence 4667788888888888888889999999999999998888776664
No 136
>PRK01379 cyaY frataxin-like protein; Provisional
Probab=29.31 E-value=1.6e+02 Score=21.84 Aligned_cols=17 Identities=12% Similarity=0.196 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHhc
Q 027450 109 SYKKLLKGLIVQSLLRL 125 (223)
Q Consensus 109 ~Y~~~L~~Li~ea~~~l 125 (223)
+|-.+...++..-...+
T Consensus 5 ef~~lad~~L~~ie~~i 21 (103)
T PRK01379 5 EFSKIAETTIAYIADKI 21 (103)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555554444444444
No 137
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.91 E-value=6.5e+02 Score=25.80 Aligned_cols=28 Identities=11% Similarity=0.310 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 8 KQIQQMVRFIRQEAEEKANEISVSAEEE 35 (223)
Q Consensus 8 ~~l~~~~~~I~~eA~~ka~eI~~~A~~e 35 (223)
..|++--..++++-+.++++...+-++|
T Consensus 327 aELerRRq~leeqqqreree~eqkEreE 354 (1118)
T KOG1029|consen 327 AELERRRQALEEQQQREREEVEQKEREE 354 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456555556665555555554444444
No 138
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=28.76 E-value=2.7e+02 Score=21.38 Aligned_cols=16 Identities=13% Similarity=0.306 Sum_probs=8.2
Q ss_pred EEEecccchHHHHHHHH
Q 027450 131 LLRCRKDDHHLVESVLE 147 (223)
Q Consensus 131 ~v~~~~~D~~lv~~~~~ 147 (223)
++|.+| ..++...++.
T Consensus 140 vly~~~-~~DIT~~Vi~ 155 (158)
T PF03938_consen 140 VLYADP-AYDITDEVIK 155 (158)
T ss_dssp EEEE-T-TSE-HHHHHH
T ss_pred eEeeCC-CCChHHHHHH
Confidence 677666 4555555554
No 139
>PHA03065 Hypothetical protein; Provisional
Probab=27.57 E-value=5.2e+02 Score=24.23 Aligned_cols=80 Identities=25% Similarity=0.329 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-----cChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHh
Q 027450 82 LQAQDDLVSNMMEAASKEVLNVS-----RDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQK 156 (223)
Q Consensus 82 L~ar~~~i~~v~~~a~e~L~~~~-----~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~ 156 (223)
|..-..+.+++.....-++.+++ .+ ..-|+.++.+++..+++.--++||.--|.+.+ +...+. ++...
T Consensus 113 ld~~d~~yEEikt~~~lrI~Kl~F~~fLa~----~~nlk~~l~~~L~~~~~~v~I~yCdgvDAEfv--MC~~ak-~~a~~ 185 (438)
T PHA03065 113 LDVDDEMYEEIKTDLELKIDKLSFQLFLAN----SNNLKRLLESALARLGENVEIVYCDGVDAEFV--MCARAK-ELAAT 185 (438)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcc----hhhHHHHHHHHHHhccCCceEEEECCcchhHH--HHHHHH-HHHhh
Confidence 44445555666555555555521 11 34688999999999987666899999999877 222332 44456
Q ss_pred hCCCCCeEEecc
Q 027450 157 LQVHPPEIIVDH 168 (223)
Q Consensus 157 ~g~~~~~i~id~ 168 (223)
+|.++.=|+.|.
T Consensus 186 ~g~WPl~iStDQ 197 (438)
T PHA03065 186 TGEWPLLISTDQ 197 (438)
T ss_pred cCCCceEEeccC
Confidence 777666566554
No 140
>KOG4702 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.35 E-value=1.8e+02 Score=20.13 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=21.3
Q ss_pred ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 027450 2 NDADVSKQIQQMVRFIRQE-AEEKANEISVSA 32 (223)
Q Consensus 2 ~~~~~~~~l~~~~~~I~~e-A~~ka~eI~~~A 32 (223)
++.+..+..+...++|+.. |.+.|+.|+..+
T Consensus 43 ~ppe~~~~~EE~~~~lRe~~a~~eaK~~R~a~ 74 (77)
T KOG4702|consen 43 SPPEATKRKEEYENFLREQMAFEEAKKIRGAA 74 (77)
T ss_pred CChHHHhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455666777777888777 777777776544
No 141
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=27.02 E-value=3.9e+02 Score=22.61 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027450 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY 55 (223)
Q Consensus 10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~ 55 (223)
.-.-...|++.|...-..++.+|+++++ +|+.+...+++.++
T Consensus 50 A~rkA~~I~q~A~~~~~~ll~qaqqqad----~L~~~~~~~~E~~~ 91 (224)
T PRK15354 50 AYRKAEKIIRDAYRYQREQKVEQQQELA----CLRKNTLEKMEVEW 91 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3445567888888888888888888877 77777666666555
No 142
>PHA03081 putative metalloprotease; Provisional
Probab=26.92 E-value=5.8e+02 Score=24.57 Aligned_cols=80 Identities=14% Similarity=0.254 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCCCCCCCCCCCCCCCccCceEE
Q 027450 113 LLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVV 192 (223)
Q Consensus 113 ~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~~i~id~~~~L~~~~~~~~~~~~~~~GGvvl 192 (223)
-+..++..-+..+.+|.++|.|+.=+...+. ++. +-|+..- .+..++. + +....+||=++
T Consensus 150 ~i~~~L~~RM~~I~GpniVIFVk~ln~~~l~-lL~---~TFGtLP---~~P~~Ip------~-------~~~~~i~gKiV 209 (595)
T PHA03081 150 DVRDMLSNRMHRISGPNIVIFVKELNPNTLS-LLN---NTFGTLP---SCPETIP------P-------PILVSIGGKIV 209 (595)
T ss_pred HHHHHHHHHHHhhcCCcEEEEEeccCHHHHH-HHH---HhcCCCC---CCccccC------C-------CCccCcCCeEE
Confidence 3556677778888899999999876654442 222 2332110 1222222 1 11355677665
Q ss_pred EecC----CcEEEeccHHHHHHHH
Q 027450 193 ASRD----GKIVCENTLDARLDVV 212 (223)
Q Consensus 193 ~s~d----g~I~vdnTle~RL~~~ 212 (223)
--+. =.|.|+||++.-|..+
T Consensus 210 MmPsPFYTvmv~V~~tl~NiLai~ 233 (595)
T PHA03081 210 MMPSPFYTVMVRVDPTLDNILAIL 233 (595)
T ss_pred EecCCceEEEEEcCccHHHHHHHH
Confidence 5443 2578999999988754
No 143
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.88 E-value=99 Score=29.57 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=28.7
Q ss_pred CccCceEEEecCCcEEEeccHHHHHHHHHhcCchhhh
Q 027450 185 SCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVF 221 (223)
Q Consensus 185 ~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir 221 (223)
..+||||-...=.+|...||.+.-.-..|++....++
T Consensus 232 TLWGGVIGedGv~GI~Ls~~~~G~~fk~fQ~~Ik~l~ 268 (574)
T COG3882 232 TLWGGVIGEDGVDGIRLSNSAEGEAFKTFQNFIKGLK 268 (574)
T ss_pred cccccccccccccceeecCCCCchhHHHHHHHHHHHH
Confidence 5799999998767899999988877667766655544
No 144
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=26.43 E-value=3.2e+02 Score=21.51 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 6 VSKQIQQMVRFIRQEAEEKANEISVSAEEE 35 (223)
Q Consensus 6 ~~~~l~~~~~~I~~eA~~ka~eI~~~A~~e 35 (223)
...+++.+...--.+|..+|++|+..|-..
T Consensus 51 fk~elE~~~~~w~~dak~kAEkiL~aal~~ 80 (144)
T PF11657_consen 51 FKEELEEIASRWGEDAKEKAEKILNAALAA 80 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555556666666666665553
No 145
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=25.72 E-value=2.9e+02 Score=20.73 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027450 3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFN 37 (223)
Q Consensus 3 ~~~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~ 37 (223)
|.++..-++.+-+.+..+|..+|..+..+=..|..
T Consensus 13 d~~~ee~~~~~q~~~e~eA~kkA~K~lkKN~rEIk 47 (109)
T PHA02571 13 DEEVEELLSELQARNEAEAEKKAAKILKKNRREIK 47 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44566667777777777787777777777666654
No 146
>PF09561 RE_HpaII: HpaII restriction endonuclease; InterPro: IPR019062 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This family includes HpaII, which recognises the double-stranded sequence CCGG and cleaves after C-1.
Probab=24.42 E-value=60 Score=29.52 Aligned_cols=21 Identities=29% Similarity=0.770 Sum_probs=18.2
Q ss_pred CccCceEEEecCCcEEEeccH
Q 027450 185 SCSGGVVVASRDGKIVCENTL 205 (223)
Q Consensus 185 ~~~GGvvl~s~dg~I~vdnTl 205 (223)
+..||++++..||.|+|..-.
T Consensus 290 ~a~gGyivV~~dGevlcYHiy 310 (355)
T PF09561_consen 290 DATGGYIVVKEDGEVLCYHIY 310 (355)
T ss_pred cccceEEEEeCCCCEEEEEeh
Confidence 578999999999999997543
No 147
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=24.29 E-value=2.5e+02 Score=19.48 Aligned_cols=18 Identities=17% Similarity=0.326 Sum_probs=13.1
Q ss_pred cEEEEecccchHHHHHHH
Q 027450 129 AVLLRCRKDDHHLVESVL 146 (223)
Q Consensus 129 e~~v~~~~~D~~lv~~~~ 146 (223)
.++|+|+|...+-+...+
T Consensus 7 s~vV~~~p~~~~~v~~~l 24 (79)
T PF03927_consen 7 SLVVHARPERLEEVAEAL 24 (79)
T ss_dssp EEEEEE-CCCHHHHHHHH
T ss_pred EEEEEECchhHHHHHHHH
Confidence 578999998887776544
No 148
>PF14164 YqzH: YqzH-like protein
Probab=24.14 E-value=1.3e+02 Score=20.39 Aligned_cols=36 Identities=11% Similarity=0.188 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHH
Q 027450 111 KKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVL 146 (223)
Q Consensus 111 ~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~ 146 (223)
..|+.++|.+++...|.+.-..-+++.|.+.+..-+
T Consensus 3 ek~I~Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~i 38 (64)
T PF14164_consen 3 EKLIEKMIINCLRQYGYDVECMPLSDEEWEELCKHI 38 (64)
T ss_pred HHHHHHHHHHHHHHhCCcccCCCCCHHHHHHHHHHH
Confidence 468888888888888765445667777776655433
No 149
>PF07549 Sec_GG: SecD/SecF GG Motif; InterPro: IPR022646 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents a GG-containing domain found in the N-terminal region of prokaryotic SecD and SecF protein export membrane proteins. It is found in association with PF02355 from PFAM. SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=23.41 E-value=72 Score=17.99 Aligned_cols=17 Identities=12% Similarity=0.423 Sum_probs=11.0
Q ss_pred CCccCceEEEecCCcEEEeccH
Q 027450 184 PSCSGGVVVASRDGKIVCENTL 205 (223)
Q Consensus 184 ~~~~GGvvl~s~dg~I~vdnTl 205 (223)
.+..||..+. +.++++-
T Consensus 13 lDf~GG~~i~-----~~~~~~~ 29 (31)
T PF07549_consen 13 LDFTGGTSIT-----LQVDKPV 29 (31)
T ss_dssp CCCC-EEEEE-----EEESTT-
T ss_pred EEcCCCeEEE-----EEecccC
Confidence 5789999998 5555543
No 150
>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane
Probab=20.76 E-value=2.6e+02 Score=18.32 Aligned_cols=38 Identities=13% Similarity=0.309 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC
Q 027450 89 VSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE 127 (223)
Q Consensus 89 i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~ 127 (223)
+..++......|..++.+. .|+...+.++.+=+..+..
T Consensus 7 L~~lY~~~L~~L~~~P~~a-~YR~~tE~it~~Rl~iv~~ 44 (57)
T PF04716_consen 7 LISLYNKTLKALKKIPEDA-AYRQYTEAITKHRLKIVEE 44 (57)
T ss_pred HHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHHHHHHc
Confidence 4458899999999999986 8999999999998876643
No 151
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M44 (clan ME). The active site residues for members of this family and family M16 occur in the motif HXXEHProtein. The type example is the vaccinia virus-type metalloendopeptidase G1 from vaccinia virus, it is a metalloendopeptidase expressed by many Poxviridae which appears to play a role in the maturation of viral proteins.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0019067 viral assembly, maturation, egress, and release
Probab=20.65 E-value=7.7e+02 Score=23.75 Aligned_cols=80 Identities=16% Similarity=0.339 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCCCCCCCCCCCCCCCccCceEE
Q 027450 113 LLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVV 192 (223)
Q Consensus 113 ~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~~i~id~~~~L~~~~~~~~~~~~~~~GGvvl 192 (223)
-+..++..-+..+.+|.++|.|+.=+...+. ++. +-|+..- .+..++. ..+ ..++||=++
T Consensus 150 ~i~~mL~~RM~~I~GpniVIFVk~l~~~~l~-lL~---~TFGtLP---~cP~~Ip------~~~-------~~~~~gKiv 209 (590)
T PF03410_consen 150 DIRNMLSNRMHRIIGPNIVIFVKELNPNILS-LLS---NTFGTLP---SCPLTIP------PNA-------FSSIGGKIV 209 (590)
T ss_pred HHHHHHHHHHHhhcCCcEEEEEeccCHHHHH-HHH---HhcCCCC---CCccccc------Ccc-------ccCCCCcEE
Confidence 3556677778888889999999886665553 222 2332110 1223332 111 355677655
Q ss_pred EecC----CcEEEeccHHHHHHHH
Q 027450 193 ASRD----GKIVCENTLDARLDVV 212 (223)
Q Consensus 193 ~s~d----g~I~vdnTle~RL~~~ 212 (223)
--+. =.|.|++|++.-|..+
T Consensus 210 MmPsPFYTvmv~V~~tl~NiLai~ 233 (590)
T PF03410_consen 210 MMPSPFYTVMVRVDNTLDNILAIM 233 (590)
T ss_pred EecCCceEEEEEcCccHHHHHHHH
Confidence 5443 2578999999988654
No 152
>PF06903 VirK: VirK protein; InterPro: IPR010694 This family consists of several bacterial VirK proteins of around 145 residues in length. The function of this family is unknown [].
Probab=20.51 E-value=71 Score=23.65 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=10.8
Q ss_pred CCccCceEEEecCCcEEEecc
Q 027450 184 PSCSGGVVVASRDGKIVCENT 204 (223)
Q Consensus 184 ~~~~GGvvl~s~dg~I~vdnT 204 (223)
....||+.+.+ =+|.-|||
T Consensus 38 s~t~Gg~~i~a--yrI~~D~t 56 (100)
T PF06903_consen 38 SKTRGGLRIDA--YRITPDGT 56 (100)
T ss_pred cccCcccceee--EEEeCCCe
Confidence 46778877654 34444444
No 153
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=20.38 E-value=3.8e+02 Score=20.09 Aligned_cols=16 Identities=31% Similarity=0.354 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 027450 20 EAEEKANEISVSAEEE 35 (223)
Q Consensus 20 eA~~ka~eI~~~A~~e 35 (223)
.|+.+|.+|.++|+.-
T Consensus 13 qAEK~A~e~V~~ARk~ 28 (108)
T KOG1772|consen 13 QAEKRAAEKVEEARKR 28 (108)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5777888888877764
Done!