Query 027450
Match_columns 223
No_of_seqs 138 out of 579
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 16:56:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027450.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027450hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4efa_E V-type proton ATPase su 100.0 1E-48 3.6E-53 331.2 27.8 213 1-222 8-220 (233)
2 3v6i_A V-type ATP synthase sub 100.0 1.7E-32 5.8E-37 224.6 24.8 178 12-222 2-183 (187)
3 2dm9_A V-type ATP synthase sub 100.0 3E-29 1E-33 205.3 10.7 187 10-222 4-194 (198)
4 3lg8_A A-type ATP synthase sub 99.9 9.3E-26 3.2E-30 168.6 -2.9 100 109-223 4-104 (106)
5 2kk7_A V-type ATP synthase sub 97.4 0.0005 1.7E-08 44.0 6.8 39 10-52 8-46 (52)
6 2dm9_A V-type ATP synthase sub 97.4 0.00034 1.2E-08 55.9 7.1 121 5-126 10-146 (198)
7 3v6i_A V-type ATP synthase sub 97.1 0.024 8.1E-07 45.3 14.4 114 6-120 7-136 (187)
8 1l2p_A ATP synthase B chain; a 95.4 0.25 8.7E-06 31.8 9.7 31 17-47 3-33 (61)
9 1l2p_A ATP synthase B chain; a 94.1 0.7 2.4E-05 29.7 9.4 48 10-57 7-54 (61)
10 2kk7_A V-type ATP synthase sub 93.8 0.046 1.6E-06 34.7 3.0 33 5-37 14-46 (52)
11 2k6i_A Uncharacterized protein 89.0 0.93 3.2E-05 29.0 5.1 27 20-50 23-49 (56)
12 2wss_S ATP synthase subunit O, 85.6 0.045 1.5E-06 43.8 -3.2 32 183-216 155-186 (190)
13 4efa_E V-type proton ATPase su 85.2 14 0.00046 30.0 18.1 95 17-125 13-107 (233)
14 2k6i_A Uncharacterized protein 80.4 2.8 9.5E-05 26.8 4.3 28 10-37 24-51 (56)
15 3v6i_B V-type ATP synthase, su 46.5 76 0.0026 22.5 13.1 29 18-50 22-50 (105)
16 4efa_G V-type proton ATPase su 36.5 1.2E+02 0.0041 22.0 11.2 33 20-56 17-49 (119)
17 3fx7_A Putative uncharacterize 33.5 57 0.002 22.8 4.2 35 85-119 46-80 (94)
18 3bpj_A Eukaryotic translation 31.3 81 0.0028 21.1 4.7 48 94-151 21-68 (80)
19 3v6i_B V-type ATP synthase, su 24.4 1.9E+02 0.0065 20.4 14.9 26 12-37 27-52 (105)
20 4efa_G V-type proton ATPase su 23.1 2.2E+02 0.0074 20.6 8.3 33 11-43 19-51 (119)
No 1
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=100.00 E-value=1e-48 Score=331.21 Aligned_cols=213 Identities=34% Similarity=0.542 Sum_probs=200.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK 80 (223)
Q Consensus 1 m~~~~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~ 80 (223)
|||+||+++|++|++||++||+++|++|..+|+++|+.++.+++++++.++...|+++.++++..+++..|...+++|+.
T Consensus 8 l~~~~v~~~i~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~ 87 (233)
T 4efa_E 8 LTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLK 87 (233)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCC
Q 027450 81 VLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH 160 (223)
Q Consensus 81 ~L~ar~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~ 160 (223)
+|.+|+++|+++|+.|+++|.+++.++..|+.+|.+||.+|+..+++++++|+|+|.|.++++++++++...|+..+|+.
T Consensus 88 vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~~Li~eal~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~ 167 (233)
T 4efa_E 88 VLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEKAQRA 167 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHCCSEEEEEECTTTHHHHTTSHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCCCcEEEEecHhhHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999998778999999999999999999999999999999999999999999999888875
Q ss_pred CCeEEeccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchhhhc
Q 027450 161 PPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFH 222 (223)
Q Consensus 161 ~~~i~id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir~ 222 (223)
.....++...+|++ .+|+|||+|+|.||+|+|||||++||+.+|++++|+||+
T Consensus 168 ~~~~~~~~~~~l~~---------~~~~GGvil~s~dGkI~vdNTle~RL~~~~~~~lp~Ir~ 220 (233)
T 4efa_E 168 PLEEIVISNDYLNK---------DLVSGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRL 220 (233)
T ss_dssp CCCEEEECSSCCCT---------TTCSSEEEEECTTSCCEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CccccccccccCCc---------ccccCceEEEECCCCEEEECCHHHHHHHHHHHHHHHHHH
Confidence 44333444456654 379999999999999999999999999999999999986
No 2
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=100.00 E-value=1.7e-32 Score=224.56 Aligned_cols=178 Identities=17% Similarity=0.233 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK----QVEIRKKIEYSMQLNASRIKVLQAQDD 87 (223)
Q Consensus 12 ~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~----~~e~~~~~~~S~~~~~~R~~~L~ar~~ 87 (223)
++...|.++|+++|++|+.+|+++++ .|+++++.++....+...+ +++..+++.+|++....|..+|.+|++
T Consensus 2 ~~~~~l~~eA~~~a~~I~~eA~~~a~----~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~e 77 (187)
T 3v6i_A 2 KLEAILSQEVEAEIQALLQEAEAKAE----AVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGE 77 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999888 8888888877766655543 344556677899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEec
Q 027450 88 LVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVD 167 (223)
Q Consensus 88 ~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~~i~id 167 (223)
+++++|+.|+++|.+++.++ .|+.+|.+||.+|+..+++++++| |+|.|.++++.++++ + | +++..+
T Consensus 78 li~~v~~~a~~~L~~~~~~~-~Y~~~L~~Li~ea~~~l~~~~~vv-~~~~D~~~v~~~~~~----~----~---~~~~~~ 144 (187)
T 3v6i_A 78 VLEEVRRRVREALEALPQKP-EWPEVVRKLALEALEALPGAKALV-ANPEDLPHLEALARE----R----G---VELQAE 144 (187)
T ss_dssp HHHHHHHHHHHHHHHGGGST-THHHHHHHHHHHHHHHCTTCCEEE-ECTTTHHHHHHHHHH----H----T---CEEEEC
T ss_pred HHHHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHHHHcCCCCeEE-ECHHHHHHHHHHHHh----c----C---eeeCCC
Confidence 99999999999999999985 799999999999999999988866 999999999988764 2 2 233211
Q ss_pred cccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchhhhc
Q 027450 168 HHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFH 222 (223)
Q Consensus 168 ~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir~ 222 (223)
++|.|||+|.|+||+|.|||||++||+.+|++++|.|++
T Consensus 145 ----------------~~~~GGvil~~~dG~I~vdnTle~rL~~~~~~~~~~I~~ 183 (187)
T 3v6i_A 145 ----------------PALRLGVRAVGAEGKTQVENSLLARLDRAWDALSSKVAQ 183 (187)
T ss_dssp ----------------TTCCSEEEEECTTSSCEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CcccCceEEEeCCCCEEEECCHHHHHHHHHHHhHHHHHH
Confidence 379999999999999999999999999999999999985
No 3
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=99.96 E-value=3e-29 Score=205.28 Aligned_cols=187 Identities=22% Similarity=0.331 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY----ERKEKQVEIRKKIEYSMQLNASRIKVLQAQ 85 (223)
Q Consensus 10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~----~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar 85 (223)
|+++++.|+++|+.+++.|..+|+++++ .|+.++..+...+. +...++++..+++..|...+..|..++.+|
T Consensus 4 le~l~~~il~~A~~~a~~il~eA~~~a~----~i~~~a~~e~~~~~~~~~~~a~~e~~~~~~~~~s~~~~~~r~~~l~~~ 79 (198)
T 2dm9_A 4 AELIIQEINKEAERKIEYILNEARQQAE----KIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEVRRKRLAIQ 79 (198)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555544444 44444433332222 122344556677788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEE
Q 027450 86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEII 165 (223)
Q Consensus 86 ~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~~~~~~~g~~~~~i~ 165 (223)
+++++.+|..|.+.|.+++ ++.|+.+|.+||.+++..++++.++|+|+|.|.+++..+++.+...|+ ++.++
T Consensus 80 ~ev~~~~~~~a~~~l~~l~--~~~y~~~l~~li~e~~~~~~~~~v~i~v~~~D~~~v~~~~~~~~~~~~------~~~l~ 151 (198)
T 2dm9_A 80 EEIISSVLEEVKRRLETMS--EDEYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELG------DVSIE 151 (198)
T ss_dssp -CHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHCT------TCEEE
T ss_pred HHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHcCCCCEEEEECHhHHHHHHHHHHHHHHHhc------CceEE
Confidence 9999999999999999965 337999999999999999888899999999999999999988777775 24667
Q ss_pred eccccCCCCCCCCCCCCCCCccCceEEEecCCcEEEeccHHHHHHHHHhcCchhhhc
Q 027450 166 VDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFH 222 (223)
Q Consensus 166 id~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir~ 222 (223)
++. | ..+.|||+|.+++|+|.|||||++||+.+++.++|.|++
T Consensus 152 i~~-------~-------~~~~GG~~i~~~~G~i~id~tl~~rl~~~~~~l~~~i~~ 194 (198)
T 2dm9_A 152 LGE-------T-------VDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTIAK 194 (198)
T ss_dssp ECC-------C-------CCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHHHH
T ss_pred ECC-------C-------CCccCceEEEeCCCCEEEECcHHHHHHHHHHHhHHHHHH
Confidence 752 1 368999999999999999999999999999999999985
No 4
>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii}
Probab=99.89 E-value=9.3e-26 Score=168.58 Aligned_cols=100 Identities=20% Similarity=0.287 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHH-HHHHHHHHHHhhCCCCCeEEeccccCCCCCCCCCCCCCCCcc
Q 027450 109 SYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESV-LESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCS 187 (223)
Q Consensus 109 ~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~-~~~~~~~~~~~~g~~~~~i~id~~~~L~~~~~~~~~~~~~~~ 187 (223)
.|+++|.+||.+|+..+++++++|+|+++|.+++++. ++++.++|+..+|+ .++|+++. | .+|+
T Consensus 4 ~Y~~lL~~LI~q~~~~l~e~~v~v~~r~~D~~lv~~~~l~~~~~e~~~~~g~-~~~v~~~~-------~-------~~~~ 68 (106)
T 3lg8_A 4 EYKDKLIKLIKDGAISLGGGELIVRLNKRDMELIDDSTLWNLEKEVENATKK-VTVLKKGE-------P-------VDIA 68 (106)
T ss_dssp STTTHHHHHHHHHHHHHTCSSCCCBCSSHHHHTTTTSSCTTTTTTHHHHSSS-CCCCCCCC-------C-------CSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEECHhhHHHHHHhhHHHHHHHHHHHhCC-eEEEEeCC-------C-------cccc
Confidence 7999999999999999999999999999999999998 99999999998887 45555442 2 4899
Q ss_pred CceEEEecCCcEEEeccHHHHHHHHHhcCchhhhcC
Q 027450 188 GGVVVASRDGKIVCENTLDARLDVVFRKKLPEVFHF 223 (223)
Q Consensus 188 GGvvl~s~dg~I~vdnTle~RL~~~~~~~lp~Ir~~ 223 (223)
|||++.|.||+|.|||||++||+.++++++|+||+.
T Consensus 69 GGvil~s~dg~I~vdNTle~rL~~l~~~~~~eI~~~ 104 (106)
T 3lg8_A 69 GGCIIETADGLKSLDNSLEAIFNRNLNVIRARITEK 104 (106)
T ss_dssp CBCBCSSCSCBCCCCSHHHHSHHHHHHHHHHHTTTS
T ss_pred ccEEEEeCCCCEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999974
No 5
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=97.45 E-value=0.0005 Score=43.99 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 027450 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR 52 (223)
Q Consensus 10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~ 52 (223)
|+++++.|+++|+.+|++|..+|+.+++ .|+.++..++.
T Consensus 8 le~i~~kI~~eA~~eA~~Il~eA~~eA~----~Ii~eA~~~Ae 46 (52)
T 2kk7_A 8 VDKIKSKILDDAKAEANKIISEAEAEKA----KILEKAKEEAE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 8999999999999999999999999998 99888776654
No 6
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=97.41 E-value=0.00034 Score=55.92 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q 027450 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKI--------EYSMQLNA 76 (223)
Q Consensus 5 ~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~--------~~S~~~~~ 76 (223)
++-++...+.++|+++|+++|++|..+|+++|+.++..+++++...+..........+....+. ........
T Consensus 10 ~il~~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~~e~~~~~~~~~s~~~~~~r~~~l~~~~ev~~~~~~~ 89 (198)
T 2dm9_A 10 EINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEVRRKRLAIQEEIISSVLEE 89 (198)
T ss_dssp -----------------------------------------------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999999999999999999887776665554443322221 22333334
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHh----hccChhHHHHHHHHHHHHHHHhcC
Q 027450 77 SRIKVLQ----AQDDLVSNMMEAASKEVLN----VSRDHNSYKKLLKGLIVQSLLRLK 126 (223)
Q Consensus 77 ~R~~~L~----ar~~~i~~v~~~a~e~L~~----~~~~~~~Y~~~L~~Li~ea~~~l~ 126 (223)
++..+.. ...+++..++.++...+.. +.-+| ....++..++......++
T Consensus 90 a~~~l~~l~~~~y~~~l~~li~e~~~~~~~~~v~i~v~~-~D~~~v~~~~~~~~~~~~ 146 (198)
T 2dm9_A 90 VKRRLETMSEDEYFESVKALLKEAIKELNEKKVRVMSNE-KTLGLIASRIEEIKSELG 146 (198)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHTCSEEEEECCH-HHHHHHHHTHHHHHHHCT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCEEEEECH-hHHHHHHHHHHHHHHHhc
Confidence 4422222 2357888888888887732 33345 455666888877666664
No 7
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=97.06 E-value=0.024 Score=45.27 Aligned_cols=114 Identities=18% Similarity=0.131 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q 027450 6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIE--------YSMQLNAS 77 (223)
Q Consensus 6 ~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~--------~S~~~~~~ 77 (223)
+....+.-.+.|+.+|+++|++|..+|+++++..+..+..+........+++....++...+.. +.......
T Consensus 7 l~~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~a 86 (187)
T 3v6i_A 7 LSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRV 86 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777889999999999999999999999987777777777777666666665555443322 23333444
Q ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHh---hccChhHHHHHHHHHHHH
Q 027450 78 RIKVLQA-----QDDLVSNMMEAASKEVLN---VSRDHNSYKKLLKGLIVQ 120 (223)
Q Consensus 78 R~~~L~a-----r~~~i~~v~~~a~e~L~~---~~~~~~~Y~~~L~~Li~e 120 (223)
+..+.+. ..+++..++.++...|.. +.-+| .-..++..++..
T Consensus 87 ~~~L~~~~~~~~Y~~~L~~Li~ea~~~l~~~~~vv~~~-~D~~~v~~~~~~ 136 (187)
T 3v6i_A 87 REALEALPQKPEWPEVVRKLALEALEALPGAKALVANP-EDLPHLEALARE 136 (187)
T ss_dssp HHHHHHGGGSTTHHHHHHHHHHHHHHHCTTCCEEEECT-TTHHHHHHHHHH
T ss_pred HHHHHhhhCCccHHHHHHHHHHHHHHHcCCCCeEEECH-HHHHHHHHHHHh
Confidence 4333221 446777777777666533 11233 224466666544
No 8
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=95.36 E-value=0.25 Score=31.84 Aligned_cols=31 Identities=13% Similarity=-0.042 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027450 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAE 47 (223)
Q Consensus 17 I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~ 47 (223)
.+.+|+.++.+|+..|..+++..+..++.++
T Consensus 3 ~L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A 33 (61)
T 1l2p_A 3 QLKKAKAEAQVIIEQANKRRSQILDEAKAEA 33 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666664444443333
No 9
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=94.05 E-value=0.7 Score=29.66 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 027450 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER 57 (223)
Q Consensus 10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~ 57 (223)
...-...|+.+|+..+..|...+..++..+..+|+..+...|..+..+
T Consensus 7 Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie~ek~~ 54 (61)
T 1l2p_A 7 AKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKR 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777777777777777777767779988888777655443
No 10
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=93.84 E-value=0.046 Score=34.70 Aligned_cols=33 Identities=24% Similarity=0.215 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027450 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFN 37 (223)
Q Consensus 5 ~~~~~l~~~~~~I~~eA~~ka~eI~~~A~~ea~ 37 (223)
++..+-+.-.+.|+.+|+.+|++|..+|+.+++
T Consensus 14 kI~~eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae 46 (52)
T 2kk7_A 14 KILDDAKAEANKIISEAEAEKAKILEKAKEEAE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777888999999999999999998887
No 11
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=88.99 E-value=0.93 Score=29.00 Aligned_cols=27 Identities=22% Similarity=0.139 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 027450 20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKK 50 (223)
Q Consensus 20 eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~ 50 (223)
+|+..|++|..+|.++++ .|+.+++.+
T Consensus 23 eAE~~A~~iVeeA~~ea~----~ii~eAree 49 (56)
T 2k6i_A 23 LAEEQAVKEIEEAKNRAE----QIKAEAIEE 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 466666666666666655 555544433
No 12
>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A
Probab=85.63 E-value=0.045 Score=43.80 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=15.1
Q ss_pred CCCccCceEEEecCCcEEEeccHHHHHHHHHhcC
Q 027450 183 GPSCSGGVVVASRDGKIVCENTLDARLDVVFRKK 216 (223)
Q Consensus 183 ~~~~~GGvvl~s~dg~I~vdnTle~RL~~~~~~~ 216 (223)
|++++|||++.. |.-++|.|+.+||+.+...+
T Consensus 155 DpsLiGG~~v~v--gd~viD~Sv~~~L~~l~~~L 186 (190)
T 2wss_S 155 DPSIMGGMIVRI--GEKYVDMSAKTKIQKLSRAM 186 (190)
T ss_dssp ----------------CCTTTTTTTTTTTTCTTT
T ss_pred ChhHhCeEEEEE--CCEEEehhHHHHHHHHHHHH
Confidence 458999999998 77779999999998776655
No 13
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=85.22 E-value=14 Score=29.96 Aligned_cols=95 Identities=15% Similarity=0.146 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027450 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA 96 (223)
Q Consensus 17 I~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~~~~~~~e~~~~~~~S~~~~~~R~~~L~ar~~~i~~v~~~a 96 (223)
+..+.+.-..-|+.+|+++|+ .|..++..+.+.+..+...++.. .+......+....-..++.....+..++
T Consensus 13 v~~~i~~m~~fI~qEA~eKA~----EI~~kAeeE~~~ek~~~v~~~~~----~i~~~~ek~~kq~e~~~~i~~S~~~~~a 84 (233)
T 4efa_E 13 VNDELNKMQAFIRKEAEEKAK----EIQLKADQEYEIEKTNIVRNETN----NIDGNFKSKLKKAMLSQQITKSTIANKM 84 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555667777887777 88766655443333222222221 1122222222233334455566666667
Q ss_pred HHHHHhhccChhHHHHHHHHHHHHHHHhc
Q 027450 97 SKEVLNVSRDHNSYKKLLKGLIVQSLLRL 125 (223)
Q Consensus 97 ~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l 125 (223)
+.++.. ...+++..++.++...|
T Consensus 85 R~~vL~------ar~e~i~~v~~~a~~~L 107 (233)
T 4efa_E 85 RLKVLS------AREQSLDGIFEETKEKL 107 (233)
T ss_dssp HHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHH------HHHHHHHHHHHHHHHHH
Confidence 666654 35677888888887766
No 14
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=80.44 E-value=2.8 Score=26.76 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027450 10 IQQMVRFIRQEAEEKANEISVSAEEEFN 37 (223)
Q Consensus 10 l~~~~~~I~~eA~~ka~eI~~~A~~ea~ 37 (223)
.++-...|..+|++++++|++.|++++.
T Consensus 24 AE~~A~~iVeeA~~ea~~ii~eAreeAk 51 (56)
T 2k6i_A 24 AEEQAVKEIEEAKNRAEQIKAEAIEEAK 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778889999999999999999986
No 15
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=46.48 E-value=76 Score=22.53 Aligned_cols=29 Identities=31% Similarity=0.328 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 027450 18 RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKK 50 (223)
Q Consensus 18 ~~eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~ 50 (223)
+.+|+..|......|+.++. .|+.++..+
T Consensus 22 lE~Ar~eA~~~v~~AEAeA~----ril~eAe~~ 50 (105)
T 3v6i_B 22 LEAAKKEAEERVKRAEAEAK----ALLEEAEAK 50 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 44566666666666666665 666665543
No 16
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=36.54 E-value=1.2e+02 Score=21.98 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 027450 20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYE 56 (223)
Q Consensus 20 eA~~ka~eI~~~A~~ea~~ek~~i~~~~k~~i~~~~~ 56 (223)
+|+.+|.+|..+|+.. +.+-+.+++.....+++
T Consensus 17 ~AEk~A~~iV~~ARk~----k~~rLKqAK~EA~~EIe 49 (119)
T 4efa_G 17 QAEKEAHEIVSKARKY----RQDKLKQAKTDAAKEID 49 (119)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 5888888998888875 44555555555554443
No 17
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=33.45 E-value=57 Score=22.84 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHH
Q 027450 85 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIV 119 (223)
Q Consensus 85 r~~~i~~v~~~a~e~L~~~~~~~~~Y~~~L~~Li~ 119 (223)
+..-.+++|.+....|..+.....+|..+|+.+|.
T Consensus 46 kr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~ 80 (94)
T 3fx7_A 46 RRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIR 80 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHH
Confidence 44556778999999999988776689999999885
No 18
>3bpj_A Eukaryotic translation initiation factor 3 subuni; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, protein biosynthesis; 1.85A {Homo sapiens}
Probab=31.29 E-value=81 Score=21.14 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=34.1
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHH
Q 027450 94 EAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 151 (223)
Q Consensus 94 ~~a~e~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~~~~~~~ 151 (223)
..+..+|..+..++ .|..|++.|+.+.+..+. ..|...+...+..+.+
T Consensus 21 ~~l~~kl~~~~ks~-~y~~f~~~lir~l~~~L~---------~~dikkv~s~l~~l~n 68 (80)
T 3bpj_A 21 KLLKDKITQYEKSL-YYASFLEVLVRDVCISLE---------IDDLKKITNSLTVLCS 68 (80)
T ss_dssp HHHHHHHGGGTTST-THHHHHHHHHHHHHTTSC---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCh-hHHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHHHH
Confidence 34445677787777 899999999999987663 4466666666654433
No 19
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=24.38 E-value=1.9e+02 Score=20.45 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027450 12 QMVRFIRQEAEEKANEISVSAEEEFN 37 (223)
Q Consensus 12 ~~~~~I~~eA~~ka~eI~~~A~~ea~ 37 (223)
+-......+|+.+|..|...|++.+.
T Consensus 27 ~eA~~~v~~AEAeA~ril~eAe~~a~ 52 (105)
T 3v6i_B 27 KEAEERVKRAEAEAKALLEEAEAKAK 52 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888888888888765
No 20
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=23.08 E-value=2.2e+02 Score=20.59 Aligned_cols=33 Identities=12% Similarity=-0.001 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 027450 11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQL 43 (223)
Q Consensus 11 ~~~~~~I~~eA~~ka~eI~~~A~~ea~~ek~~i 43 (223)
++-...|.++|+..-..-..+|..+|..|....
T Consensus 19 Ek~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~y 51 (119)
T 4efa_G 19 EKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSY 51 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566888888888788888888877444444
Done!