Query 027451
Match_columns 223
No_of_seqs 119 out of 328
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 10:07:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027451.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027451hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1962 B-cell receptor-associ 100.0 3E-47 6.5E-52 322.9 23.9 207 1-212 1-214 (216)
2 PF05529 Bap31: B-cell recepto 100.0 8.6E-43 1.9E-47 293.3 21.7 180 2-194 5-192 (192)
3 COG5374 Uncharacterized conser 100.0 1.7E-33 3.8E-38 230.7 20.4 173 2-209 5-185 (192)
4 KOG1962 B-cell receptor-associ 98.8 5.4E-07 1.2E-11 77.3 17.2 158 45-208 45-203 (216)
5 PF11559 ADIP: Afadin- and alp 96.7 0.063 1.4E-06 43.3 12.7 95 105-213 36-130 (151)
6 COG4372 Uncharacterized protei 96.5 0.074 1.6E-06 49.6 13.1 115 93-207 52-167 (499)
7 PRK11637 AmiB activator; Provi 96.3 0.12 2.6E-06 48.5 13.9 58 146-203 72-129 (428)
8 PF02183 HALZ: Homeobox associ 96.3 0.011 2.4E-07 38.7 4.9 36 176-211 4-39 (45)
9 KOG0995 Centromere-associated 95.3 1.2 2.5E-05 43.6 16.1 58 154-211 292-352 (581)
10 PF00038 Filament: Intermediat 95.2 0.74 1.6E-05 41.0 14.0 30 105-134 9-38 (312)
11 PRK09039 hypothetical protein; 95.0 1.8 3.9E-05 39.8 16.1 45 153-197 141-185 (343)
12 PF08614 ATG16: Autophagy prot 94.6 0.4 8.8E-06 40.3 9.9 65 143-207 117-181 (194)
13 COG5185 HEC1 Protein involved 94.6 4.7 0.0001 38.8 17.9 56 156-211 330-388 (622)
14 PRK11637 AmiB activator; Provi 94.4 0.82 1.8E-05 42.9 12.6 44 157-200 76-119 (428)
15 PF14662 CCDC155: Coiled-coil 94.2 0.95 2.1E-05 38.5 11.2 9 123-131 45-53 (193)
16 PF06810 Phage_GP20: Phage min 93.4 0.81 1.8E-05 37.5 9.1 49 154-202 25-76 (155)
17 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.2 3.3 7.1E-05 32.7 12.2 60 150-209 67-130 (132)
18 COG3883 Uncharacterized protei 92.9 1.9 4E-05 38.5 11.2 14 88-101 3-16 (265)
19 COG1579 Zn-ribbon protein, pos 92.8 2.2 4.8E-05 37.5 11.6 32 176-207 95-126 (239)
20 PRK10884 SH3 domain-containing 92.7 1.2 2.7E-05 38.2 9.6 20 110-129 89-108 (206)
21 COG4942 Membrane-bound metallo 92.7 2.5 5.3E-05 40.1 12.3 94 90-200 17-110 (420)
22 PF10473 CENP-F_leu_zip: Leuci 92.6 4.6 0.0001 32.6 12.5 29 107-135 24-52 (140)
23 PF13851 GAS: Growth-arrest sp 92.0 3.2 7E-05 35.3 11.3 15 94-108 17-31 (201)
24 PF04111 APG6: Autophagy prote 91.6 1.4 3E-05 40.1 9.3 26 159-184 67-92 (314)
25 PF04156 IncA: IncA protein; 91.6 6.8 0.00015 32.3 20.7 56 150-205 131-186 (191)
26 PF11932 DUF3450: Protein of u 91.3 5.7 0.00012 34.6 12.5 48 145-192 52-99 (251)
27 PF04111 APG6: Autophagy prote 91.2 3.4 7.4E-05 37.5 11.4 29 179-207 101-129 (314)
28 PF10481 CENP-F_N: Cenp-F N-te 91.1 3.7 8.1E-05 36.8 10.9 63 154-216 79-141 (307)
29 TIGR03185 DNA_S_dndD DNA sulfu 91.0 3.6 7.9E-05 40.8 12.2 78 107-196 391-468 (650)
30 TIGR03752 conj_TIGR03752 integ 90.9 4.7 0.0001 38.7 12.2 80 109-209 61-141 (472)
31 PF07888 CALCOCO1: Calcium bin 90.7 3.2 7E-05 40.6 11.2 58 150-207 158-215 (546)
32 PF05266 DUF724: Protein of un 90.7 9.4 0.0002 32.3 15.0 12 55-66 51-62 (190)
33 PF08317 Spc7: Spc7 kinetochor 90.7 3.8 8.2E-05 37.3 11.2 8 59-66 76-83 (325)
34 PF09726 Macoilin: Transmembra 90.5 4.4 9.5E-05 40.9 12.2 64 147-211 543-607 (697)
35 PF14662 CCDC155: Coiled-coil 90.4 6.6 0.00014 33.4 11.4 23 185-207 117-139 (193)
36 PF00038 Filament: Intermediat 89.9 12 0.00025 33.3 13.5 27 103-129 14-40 (312)
37 PF12777 MT: Microtubule-bindi 89.8 0.37 8.1E-06 44.1 3.9 34 93-126 192-226 (344)
38 COG3879 Uncharacterized protei 89.8 9.5 0.0002 33.7 12.3 74 91-176 11-84 (247)
39 PF08614 ATG16: Autophagy prot 89.8 3.4 7.4E-05 34.7 9.4 23 150-172 117-139 (194)
40 PRK12704 phosphodiesterase; Pr 89.6 12 0.00027 36.3 14.3 25 175-199 115-139 (520)
41 PF10234 Cluap1: Clusterin-ass 89.5 4.6 0.0001 36.1 10.4 56 147-202 181-236 (267)
42 KOG0977 Nuclear envelope prote 89.2 6.7 0.00015 38.4 12.0 28 104-131 46-73 (546)
43 PF06005 DUF904: Protein of un 89.2 2.7 5.8E-05 30.2 7.1 27 181-207 36-62 (72)
44 PF07888 CALCOCO1: Calcium bin 89.2 5.2 0.00011 39.1 11.2 41 155-195 205-245 (546)
45 PF12329 TMF_DNA_bd: TATA elem 88.9 5.6 0.00012 28.5 8.7 16 179-194 49-64 (74)
46 PRK10884 SH3 domain-containing 88.9 12 0.00025 32.2 12.1 23 107-129 93-115 (206)
47 PF11559 ADIP: Afadin- and alp 88.5 11 0.00024 30.1 13.2 54 154-207 92-149 (151)
48 PF10186 Atg14: UV radiation r 88.4 9.3 0.0002 33.3 11.6 13 114-126 27-39 (302)
49 PHA02562 46 endonuclease subun 88.4 6.2 0.00013 37.9 11.3 51 157-207 345-395 (562)
50 PF00261 Tropomyosin: Tropomyo 88.1 17 0.00036 31.5 12.9 55 154-208 174-228 (237)
51 COG4026 Uncharacterized protei 87.9 6 0.00013 34.7 9.6 50 153-209 153-202 (290)
52 PF13870 DUF4201: Domain of un 87.9 13 0.00028 30.6 11.5 67 148-214 97-168 (177)
53 PF07106 TBPIP: Tat binding pr 87.8 4.3 9.2E-05 33.2 8.5 62 143-204 73-136 (169)
54 PF04156 IncA: IncA protein; 87.7 14 0.00031 30.4 12.9 56 153-208 127-182 (191)
55 PF07106 TBPIP: Tat binding pr 87.6 3.5 7.6E-05 33.7 7.9 64 148-211 71-136 (169)
56 COG2433 Uncharacterized conser 87.6 12 0.00025 37.2 12.4 27 103-129 374-400 (652)
57 PF04977 DivIC: Septum formati 87.5 2 4.4E-05 30.1 5.7 11 156-166 38-48 (80)
58 PF10473 CENP-F_leu_zip: Leuci 87.5 14 0.0003 29.9 11.5 34 156-189 52-85 (140)
59 PF10211 Ax_dynein_light: Axon 87.3 17 0.00036 30.6 13.9 61 149-209 127-188 (189)
60 PF07407 Seadorna_VP6: Seadorn 87.1 2.7 5.8E-05 38.7 7.4 55 141-195 31-87 (420)
61 COG1579 Zn-ribbon protein, pos 86.9 3.6 7.8E-05 36.2 7.9 18 191-208 89-106 (239)
62 PF05266 DUF724: Protein of un 86.9 17 0.00038 30.7 11.8 20 44-63 43-62 (190)
63 KOG0999 Microtubule-associated 86.9 4.1 8.9E-05 40.0 8.8 60 150-209 9-75 (772)
64 PF05483 SCP-1: Synaptonemal c 86.8 7.6 0.00017 39.0 10.8 43 174-216 591-633 (786)
65 PF12718 Tropomyosin_1: Tropom 86.7 6.7 0.00015 31.6 8.9 21 150-170 36-56 (143)
66 PF03954 Lectin_N: Hepatic lec 86.6 4.8 0.0001 32.4 7.8 75 94-174 38-112 (138)
67 COG1196 Smc Chromosome segrega 86.3 6.8 0.00015 41.6 11.0 19 180-198 456-474 (1163)
68 PF05529 Bap31: B-cell recepto 86.2 18 0.00039 30.1 17.4 30 176-205 160-189 (192)
69 KOG0963 Transcription factor/C 85.7 20 0.00043 35.6 12.9 109 95-204 230-357 (629)
70 PF06156 DUF972: Protein of un 85.6 7.7 0.00017 29.9 8.3 50 156-212 8-57 (107)
71 PF14584 DUF4446: Protein of u 85.5 11 0.00024 30.7 9.7 36 94-129 2-38 (151)
72 PF10146 zf-C4H2: Zinc finger- 85.5 24 0.00052 30.8 14.5 50 157-206 54-103 (230)
73 PF11932 DUF3450: Protein of u 85.4 21 0.00047 31.0 12.1 46 156-201 49-94 (251)
74 PF15619 Lebercilin: Ciliary p 85.3 22 0.00048 30.2 11.9 36 159-194 121-156 (194)
75 PF10186 Atg14: UV radiation r 84.8 25 0.00055 30.5 13.6 56 149-204 84-139 (302)
76 PF10146 zf-C4H2: Zinc finger- 84.6 19 0.00041 31.5 11.2 22 189-210 79-100 (230)
77 PF07061 Swi5: Swi5; InterPro 84.6 4.3 9.3E-05 29.9 6.2 23 184-206 32-54 (83)
78 PF04136 Sec34: Sec34-like fam 84.5 15 0.00032 30.0 10.0 64 156-219 21-90 (157)
79 PRK03918 chromosome segregatio 84.5 11 0.00025 38.2 11.3 11 186-196 247-257 (880)
80 COG4026 Uncharacterized protei 84.3 9.9 0.00022 33.3 9.1 32 143-174 150-181 (290)
81 COG3883 Uncharacterized protei 84.1 21 0.00046 31.8 11.5 38 150-187 53-90 (265)
82 PF15188 CCDC-167: Coiled-coil 84.1 5.9 0.00013 29.4 6.7 27 176-202 42-68 (85)
83 TIGR02894 DNA_bind_RsfA transc 83.8 14 0.00031 30.5 9.5 42 158-199 106-147 (161)
84 KOG0933 Structural maintenance 83.8 9.7 0.00021 39.8 10.2 31 94-124 720-758 (1174)
85 PF12329 TMF_DNA_bd: TATA elem 83.6 14 0.0003 26.5 8.6 38 178-215 34-71 (74)
86 KOG0250 DNA repair protein RAD 83.6 15 0.00033 38.6 11.6 28 176-203 400-427 (1074)
87 KOG0243 Kinesin-like protein [ 83.6 18 0.00039 38.0 12.1 101 111-211 408-517 (1041)
88 KOG2264 Exostosin EXT1L [Signa 83.6 4.4 9.4E-05 40.0 7.3 48 154-201 105-152 (907)
89 PF12325 TMF_TATA_bd: TATA ele 83.4 16 0.00036 28.7 9.4 33 175-207 66-105 (120)
90 PRK09039 hypothetical protein; 83.1 23 0.00049 32.6 11.7 47 156-202 137-183 (343)
91 KOG0971 Microtubule-associated 82.9 31 0.00067 36.1 13.2 94 115-208 340-441 (1243)
92 PF09738 DUF2051: Double stran 82.8 29 0.00063 31.5 12.0 84 113-203 83-166 (302)
93 TIGR03185 DNA_S_dndD DNA sulfu 82.5 19 0.00042 35.7 11.8 44 157-200 422-465 (650)
94 PF07200 Mod_r: Modifier of ru 82.5 20 0.00044 28.5 9.9 23 178-200 70-92 (150)
95 PF13094 CENP-Q: CENP-Q, a CEN 82.4 11 0.00023 30.6 8.4 50 156-205 41-91 (160)
96 PRK15422 septal ring assembly 82.1 8 0.00017 28.3 6.6 57 145-208 14-70 (79)
97 PF09730 BicD: Microtubule-ass 81.8 15 0.00032 37.3 10.6 20 112-131 32-51 (717)
98 PF04849 HAP1_N: HAP1 N-termin 81.6 26 0.00057 31.9 11.2 59 150-208 207-265 (306)
99 KOG0996 Structural maintenance 81.1 11 0.00023 40.1 9.5 53 156-208 914-966 (1293)
100 PF05615 THOC7: Tho complex su 81.1 22 0.00048 28.0 9.6 10 192-201 116-125 (139)
101 PF03962 Mnd1: Mnd1 family; I 81.1 11 0.00024 31.8 8.2 24 104-127 59-82 (188)
102 PF11544 Spc42p: Spindle pole 80.9 10 0.00022 27.5 6.8 48 154-208 3-50 (76)
103 PF10174 Cast: RIM-binding pro 80.7 6.9 0.00015 40.0 8.0 51 158-208 116-166 (775)
104 PF06008 Laminin_I: Laminin Do 80.6 39 0.00084 29.6 13.0 58 151-208 54-111 (264)
105 PF09403 FadA: Adhesion protei 80.4 27 0.00059 27.7 11.1 22 107-128 20-41 (126)
106 PRK13169 DNA replication intia 80.4 10 0.00022 29.4 7.1 47 157-210 9-55 (110)
107 PF04420 CHD5: CHD5-like prote 80.2 11 0.00024 30.8 7.8 57 110-175 36-92 (161)
108 PRK11281 hypothetical protein; 80.0 19 0.00041 38.4 11.1 103 106-215 65-180 (1113)
109 PF00261 Tropomyosin: Tropomyo 79.9 39 0.00085 29.2 12.3 50 158-207 171-220 (237)
110 PRK02224 chromosome segregatio 79.4 20 0.00043 36.5 10.9 12 188-199 416-427 (880)
111 PRK15422 septal ring assembly 79.3 22 0.00048 26.0 9.3 18 196-213 51-68 (79)
112 PRK13729 conjugal transfer pil 78.7 8.7 0.00019 37.0 7.5 24 184-207 97-120 (475)
113 KOG0804 Cytoplasmic Zn-finger 78.6 62 0.0013 31.2 13.0 18 115-132 348-365 (493)
114 PF13805 Pil1: Eisosome compon 78.6 50 0.0011 29.6 12.4 53 146-198 149-209 (271)
115 PF10805 DUF2730: Protein of u 78.5 27 0.00059 26.6 11.5 26 94-119 15-40 (106)
116 TIGR03545 conserved hypothetic 78.5 13 0.00029 36.5 8.9 36 154-189 217-252 (555)
117 PF10205 KLRAQ: Predicted coil 78.2 28 0.00062 26.7 11.3 47 155-201 25-71 (102)
118 PRK02224 chromosome segregatio 77.9 33 0.0007 35.0 11.9 11 179-189 629-639 (880)
119 PF12761 End3: Actin cytoskele 77.8 28 0.0006 29.7 9.6 34 171-204 161-194 (195)
120 TIGR01005 eps_transp_fam exopo 77.7 49 0.0011 33.3 13.0 29 176-204 375-403 (754)
121 KOG1003 Actin filament-coating 77.3 38 0.00082 29.0 10.2 49 154-202 135-183 (205)
122 PF07407 Seadorna_VP6: Seadorn 77.2 15 0.00032 33.9 8.2 58 148-205 31-90 (420)
123 KOG0933 Structural maintenance 77.1 29 0.00064 36.5 11.0 70 145-214 395-464 (1174)
124 PF02403 Seryl_tRNA_N: Seryl-t 77.0 28 0.00061 26.0 9.2 51 156-206 43-96 (108)
125 PRK14139 heat shock protein Gr 76.9 11 0.00023 31.9 6.9 41 149-189 32-72 (185)
126 PRK12704 phosphodiesterase; Pr 76.8 76 0.0016 31.0 13.5 40 166-205 99-138 (520)
127 PRK14158 heat shock protein Gr 76.4 10 0.00022 32.3 6.6 40 150-189 41-80 (194)
128 TIGR03319 YmdA_YtgF conserved 76.3 72 0.0016 31.1 13.2 33 170-202 97-129 (514)
129 PRK14162 heat shock protein Gr 76.2 12 0.00026 31.9 7.0 40 150-189 40-79 (194)
130 KOG0994 Extracellular matrix g 76.2 25 0.00055 37.7 10.3 33 172-204 1262-1294(1758)
131 PRK04778 septation ring format 76.2 75 0.0016 31.1 13.5 61 156-218 105-165 (569)
132 KOG0995 Centromere-associated 76.1 36 0.00079 33.5 11.0 37 159-195 335-371 (581)
133 COG5415 Predicted integral mem 76.1 27 0.00058 30.3 9.0 33 90-122 70-111 (251)
134 TIGR02680 conserved hypothetic 75.8 35 0.00075 37.1 11.9 44 153-196 280-323 (1353)
135 PRK00888 ftsB cell division pr 75.8 18 0.00039 27.6 7.3 8 182-189 53-60 (105)
136 COG1382 GimC Prefoldin, chaper 75.5 38 0.00082 26.7 11.0 29 177-205 84-112 (119)
137 PF12325 TMF_TATA_bd: TATA ele 75.4 38 0.00082 26.6 10.8 20 181-200 65-84 (120)
138 PF14235 DUF4337: Domain of un 75.2 20 0.00044 29.4 7.9 32 171-202 81-112 (157)
139 PHA02047 phage lambda Rz1-like 74.8 12 0.00026 28.4 5.9 45 157-201 35-79 (101)
140 KOG1760 Molecular chaperone Pr 74.7 37 0.00081 27.0 8.8 30 106-135 22-51 (131)
141 KOG0250 DNA repair protein RAD 74.7 38 0.00081 35.8 11.2 38 156-193 351-388 (1074)
142 TIGR02894 DNA_bind_RsfA transc 74.4 26 0.00057 29.0 8.3 20 179-198 113-132 (161)
143 COG4467 Regulator of replicati 74.2 17 0.00036 28.3 6.6 46 157-209 9-54 (114)
144 PF10234 Cluap1: Clusterin-ass 74.1 66 0.0014 28.8 11.7 51 158-208 185-235 (267)
145 PF09789 DUF2353: Uncharacteri 73.9 28 0.00061 31.9 9.2 28 177-204 133-160 (319)
146 KOG0288 WD40 repeat protein Ti 73.8 70 0.0015 30.5 11.8 21 108-128 28-48 (459)
147 KOG0996 Structural maintenance 73.6 34 0.00074 36.5 10.6 55 154-208 540-594 (1293)
148 PF07926 TPR_MLP1_2: TPR/MLP1/ 73.5 39 0.00085 26.5 9.0 31 178-208 60-90 (132)
149 PF12777 MT: Microtubule-bindi 73.4 10 0.00022 34.7 6.3 38 177-214 242-279 (344)
150 COG3074 Uncharacterized protei 73.0 32 0.00069 24.7 8.7 53 149-208 18-70 (79)
151 KOG2264 Exostosin EXT1L [Signa 72.7 22 0.00047 35.4 8.5 42 146-187 104-145 (907)
152 KOG0946 ER-Golgi vesicle-tethe 72.4 59 0.0013 33.6 11.6 62 154-215 655-716 (970)
153 KOG0161 Myosin class II heavy 72.2 46 0.00099 37.6 11.7 8 18-25 813-820 (1930)
154 PRK04863 mukB cell division pr 72.0 67 0.0015 35.5 12.9 32 169-200 382-413 (1486)
155 KOG4403 Cell surface glycoprot 72.0 38 0.00083 32.5 9.7 32 181-214 294-325 (575)
156 KOG0994 Extracellular matrix g 71.5 54 0.0012 35.4 11.4 53 150-202 1620-1672(1758)
157 PF06005 DUF904: Protein of un 71.5 34 0.00074 24.4 9.4 15 150-164 19-33 (72)
158 PF04799 Fzo_mitofusin: fzo-li 71.0 21 0.00046 29.8 7.1 43 154-200 125-167 (171)
159 KOG0971 Microtubule-associated 71.0 41 0.00089 35.2 10.3 31 158-188 327-357 (1243)
160 PF06156 DUF972: Protein of un 70.8 25 0.00054 27.0 7.0 26 144-169 31-56 (107)
161 TIGR03752 conj_TIGR03752 integ 70.5 41 0.00088 32.5 9.7 29 105-133 64-92 (472)
162 smart00787 Spc7 Spc7 kinetocho 70.5 85 0.0018 28.6 12.8 6 196-201 276-281 (312)
163 PF06103 DUF948: Bacterial pro 70.4 35 0.00077 24.7 7.6 52 158-209 21-72 (90)
164 PF00170 bZIP_1: bZIP transcri 70.2 24 0.00052 24.0 6.2 20 179-198 42-61 (64)
165 TIGR03007 pepcterm_ChnLen poly 70.2 88 0.0019 29.6 12.2 25 106-130 210-234 (498)
166 PF10392 COG5: Golgi transport 70.1 26 0.00056 27.5 7.2 30 171-200 66-95 (132)
167 TIGR03319 YmdA_YtgF conserved 69.5 1.1E+02 0.0025 29.7 13.8 36 164-199 98-133 (514)
168 PF09726 Macoilin: Transmembra 69.2 44 0.00096 33.8 10.2 29 180-208 541-569 (697)
169 PF06160 EzrA: Septation ring 69.1 1.2E+02 0.0026 29.7 14.3 54 156-209 101-154 (560)
170 PRK13428 F0F1 ATP synthase sub 69.1 1.1E+02 0.0023 29.2 12.6 27 94-120 7-33 (445)
171 KOG0946 ER-Golgi vesicle-tethe 69.0 46 0.001 34.3 10.1 60 152-211 809-868 (970)
172 PF12128 DUF3584: Protein of u 68.9 87 0.0019 33.6 12.8 46 173-218 493-538 (1201)
173 TIGR02449 conserved hypothetic 68.9 38 0.00082 23.9 7.7 36 178-213 22-57 (65)
174 KOG0999 Microtubule-associated 68.8 62 0.0014 32.1 10.6 27 178-204 178-207 (772)
175 COG1340 Uncharacterized archae 68.8 73 0.0016 28.9 10.5 20 181-200 218-237 (294)
176 COG4768 Uncharacterized protei 68.5 21 0.00046 28.7 6.3 31 178-208 39-69 (139)
177 PF15070 GOLGA2L5: Putative go 68.5 54 0.0012 32.8 10.5 56 151-206 204-259 (617)
178 PRK11519 tyrosine kinase; Prov 68.3 46 0.001 33.5 10.2 30 175-204 368-397 (719)
179 PRK04863 mukB cell division pr 68.2 66 0.0014 35.5 11.8 43 157-199 356-398 (1486)
180 PF07200 Mod_r: Modifier of ru 68.1 58 0.0013 25.8 9.0 21 182-202 60-80 (150)
181 PRK14148 heat shock protein Gr 68.1 25 0.00054 30.0 7.1 40 149-188 40-79 (195)
182 PF05377 FlaC_arch: Flagella a 68.0 35 0.00077 23.2 6.6 23 179-201 23-45 (55)
183 PF13851 GAS: Growth-arrest sp 68.0 75 0.0016 27.0 12.4 20 178-197 108-127 (201)
184 PRK09841 cryptic autophosphory 68.0 50 0.0011 33.3 10.4 30 102-131 269-298 (726)
185 PRK13922 rod shape-determining 67.9 60 0.0013 28.4 9.9 17 192-208 94-110 (276)
186 PF10805 DUF2730: Protein of u 67.9 31 0.00066 26.3 7.0 23 176-198 78-100 (106)
187 PRK05431 seryl-tRNA synthetase 67.5 44 0.00095 31.6 9.4 23 106-128 27-49 (425)
188 TIGR01843 type_I_hlyD type I s 67.3 87 0.0019 28.5 11.2 28 165-192 205-232 (423)
189 PF14197 Cep57_CLD_2: Centroso 67.2 42 0.0009 23.7 9.2 26 182-207 38-63 (69)
190 COG3167 PilO Tfp pilus assembl 67.2 24 0.00052 30.2 6.7 39 157-199 57-95 (211)
191 PF04102 SlyX: SlyX; InterPro 66.5 42 0.00091 23.5 7.1 34 177-210 18-51 (69)
192 PRK02119 hypothetical protein; 66.2 45 0.00098 23.8 7.6 33 177-209 23-55 (73)
193 PHA03011 hypothetical protein; 66.1 13 0.00027 28.6 4.4 27 178-204 58-84 (120)
194 PRK14143 heat shock protein Gr 66.0 26 0.00057 30.7 7.0 40 150-189 68-107 (238)
195 PRK11281 hypothetical protein; 65.9 96 0.0021 33.3 12.2 37 149-185 73-109 (1113)
196 PF05911 DUF869: Plant protein 65.8 1.7E+02 0.0036 30.2 14.1 37 94-130 534-570 (769)
197 PRK10636 putative ABC transpor 65.8 36 0.00079 33.7 8.8 61 150-210 564-631 (638)
198 PF05667 DUF812: Protein of un 65.8 56 0.0012 32.5 10.0 69 146-214 444-528 (594)
199 PF10779 XhlA: Haemolysin XhlA 65.7 42 0.00091 23.5 6.9 41 156-196 6-46 (71)
200 PRK14161 heat shock protein Gr 65.7 18 0.00038 30.4 5.7 42 148-189 18-59 (178)
201 PF15254 CCDC14: Coiled-coil d 65.6 90 0.002 32.1 11.3 52 155-206 500-551 (861)
202 PRK14160 heat shock protein Gr 65.3 45 0.00098 28.8 8.2 20 183-202 74-93 (211)
203 PF04728 LPP: Lipoprotein leuc 65.0 42 0.00091 23.0 7.9 10 157-166 11-20 (56)
204 PF05701 WEMBL: Weak chloropla 64.8 1E+02 0.0023 29.9 11.6 52 158-209 283-334 (522)
205 PRK13729 conjugal transfer pil 64.7 32 0.00069 33.3 7.8 42 145-186 79-120 (475)
206 PF10458 Val_tRNA-synt_C: Valy 64.6 44 0.00095 23.0 7.3 23 150-172 5-27 (66)
207 PRK14145 heat shock protein Gr 64.4 25 0.00053 30.0 6.4 40 149-188 45-84 (196)
208 PF12709 Kinetocho_Slk19: Cent 64.4 57 0.0012 24.3 8.5 26 184-209 49-74 (87)
209 COG4942 Membrane-bound metallo 64.3 1.2E+02 0.0027 28.8 11.5 23 107-129 38-60 (420)
210 PF15619 Lebercilin: Ciliary p 63.8 61 0.0013 27.5 8.7 27 161-187 87-113 (194)
211 PF04136 Sec34: Sec34-like fam 63.7 71 0.0015 26.0 8.8 21 176-196 58-78 (157)
212 PF14523 Syntaxin_2: Syntaxin- 63.7 55 0.0012 23.9 12.5 32 179-210 66-97 (102)
213 PF03962 Mnd1: Mnd1 family; I 63.3 90 0.0019 26.2 11.2 94 107-204 69-162 (188)
214 PF08898 DUF1843: Domain of un 63.3 17 0.00036 24.6 4.1 35 179-213 19-53 (53)
215 smart00503 SynN Syntaxin N-ter 62.6 61 0.0013 24.0 13.8 30 179-208 84-113 (117)
216 COG1842 PspA Phage shock prote 62.6 1E+02 0.0023 26.7 13.6 88 105-201 50-137 (225)
217 COG0711 AtpF F0F1-type ATP syn 62.5 84 0.0018 25.6 10.8 26 95-120 13-38 (161)
218 COG2841 Uncharacterized protei 62.2 13 0.00028 26.7 3.5 30 181-210 7-36 (72)
219 KOG0161 Myosin class II heavy 62.1 99 0.0021 35.1 11.8 14 176-189 963-976 (1930)
220 TIGR02449 conserved hypothetic 61.9 53 0.0012 23.1 7.8 43 147-189 19-61 (65)
221 KOG1029 Endocytic adaptor prot 61.3 49 0.0011 34.1 8.6 57 152-208 447-503 (1118)
222 PF09789 DUF2353: Uncharacteri 60.9 1.4E+02 0.003 27.5 12.5 66 142-207 126-205 (319)
223 PF05911 DUF869: Plant protein 60.4 1.1E+02 0.0024 31.5 11.1 26 89-114 533-558 (769)
224 PF10168 Nup88: Nuclear pore c 60.3 1.3E+02 0.0029 30.6 11.7 31 178-208 640-670 (717)
225 KOG0018 Structural maintenance 60.3 1.2E+02 0.0025 32.4 11.3 33 177-209 303-335 (1141)
226 PF00170 bZIP_1: bZIP transcri 60.3 51 0.0011 22.4 6.5 28 179-206 35-62 (64)
227 PLN02678 seryl-tRNA synthetase 60.2 67 0.0015 30.8 9.2 29 179-207 80-108 (448)
228 PF15070 GOLGA2L5: Putative go 60.1 1.6E+02 0.0036 29.4 12.1 37 171-207 154-190 (617)
229 PRK14153 heat shock protein Gr 60.1 39 0.00086 28.7 6.9 37 152-188 36-72 (194)
230 PF08826 DMPK_coil: DMPK coile 60.1 55 0.0012 22.7 7.0 8 179-186 48-55 (61)
231 PF05701 WEMBL: Weak chloropla 60.1 72 0.0016 31.0 9.6 28 107-134 27-54 (522)
232 KOG0243 Kinesin-like protein [ 59.8 1.2E+02 0.0026 32.2 11.4 58 154-211 502-559 (1041)
233 KOG4571 Activating transcripti 59.7 27 0.00058 31.6 6.0 35 156-197 248-282 (294)
234 KOG4403 Cell surface glycoprot 59.7 1.7E+02 0.0037 28.3 11.4 26 106-131 244-269 (575)
235 PRK14148 heat shock protein Gr 59.7 47 0.001 28.3 7.3 29 179-207 49-77 (195)
236 PF10212 TTKRSYEDQ: Predicted 59.7 1.7E+02 0.0036 28.7 11.7 47 115-168 435-481 (518)
237 smart00338 BRLZ basic region l 59.4 40 0.00086 23.0 5.7 20 179-198 42-61 (65)
238 PHA01750 hypothetical protein 59.3 62 0.0013 23.0 6.7 27 180-206 45-71 (75)
239 PF07989 Microtub_assoc: Micro 59.2 32 0.0007 24.7 5.3 21 153-173 47-67 (75)
240 KOG4593 Mitotic checkpoint pro 59.1 1.6E+02 0.0035 29.9 11.7 60 150-209 469-528 (716)
241 KOG0982 Centrosomal protein Nu 58.9 1.7E+02 0.0038 28.1 11.4 57 144-200 306-362 (502)
242 PF03961 DUF342: Protein of un 58.9 42 0.0009 31.8 7.6 31 179-209 377-407 (451)
243 PRK04406 hypothetical protein; 58.9 65 0.0014 23.1 8.0 39 171-209 19-57 (75)
244 PF10168 Nup88: Nuclear pore c 58.9 55 0.0012 33.3 8.7 28 179-206 588-615 (717)
245 PF04350 PilO: Pilus assembly 58.7 14 0.00029 28.8 3.6 20 177-196 23-42 (144)
246 TIGR02209 ftsL_broad cell divi 58.6 23 0.00049 25.2 4.6 13 178-190 46-58 (85)
247 PF12128 DUF3584: Protein of u 58.6 92 0.002 33.4 10.8 25 176-200 684-708 (1201)
248 PF03961 DUF342: Protein of un 58.6 84 0.0018 29.7 9.6 32 182-213 373-404 (451)
249 PRK14140 heat shock protein Gr 58.5 30 0.00065 29.4 5.9 40 150-189 38-77 (191)
250 TIGR03017 EpsF chain length de 58.5 1.6E+02 0.0034 27.4 12.9 15 112-126 259-273 (444)
251 KOG4360 Uncharacterized coiled 58.0 2E+02 0.0043 28.4 12.5 16 193-208 284-299 (596)
252 PF06459 RR_TM4-6: Ryanodine R 57.9 12 0.00027 33.4 3.6 27 82-111 163-189 (274)
253 TIGR03495 phage_LysB phage lys 57.9 98 0.0021 24.9 13.2 15 190-204 81-95 (135)
254 KOG3990 Uncharacterized conser 57.9 35 0.00076 30.4 6.2 35 150-184 226-260 (305)
255 PF04012 PspA_IM30: PspA/IM30 57.8 1.1E+02 0.0025 25.6 13.8 95 105-201 49-143 (221)
256 KOG4643 Uncharacterized coiled 57.7 55 0.0012 34.6 8.4 52 145-203 173-224 (1195)
257 PRK09343 prefoldin subunit bet 57.7 88 0.0019 24.3 9.7 29 177-205 85-113 (121)
258 PRK13922 rod shape-determining 57.7 1.3E+02 0.0028 26.3 12.6 13 154-166 74-86 (276)
259 PF06295 DUF1043: Protein of u 57.7 68 0.0015 25.2 7.5 11 156-166 39-49 (128)
260 PRK13169 DNA replication intia 57.7 33 0.0007 26.6 5.5 26 143-168 30-55 (110)
261 COG4372 Uncharacterized protei 57.5 1.8E+02 0.0039 27.8 11.8 11 47-57 54-64 (499)
262 PF09744 Jnk-SapK_ap_N: JNK_SA 57.4 93 0.002 25.6 8.4 93 115-207 51-147 (158)
263 PF10716 NdhL: NADH dehydrogen 57.3 59 0.0013 23.9 6.4 33 4-36 15-53 (81)
264 TIGR01005 eps_transp_fam exopo 57.1 2.2E+02 0.0047 28.7 12.9 22 107-128 288-309 (754)
265 PF05278 PEARLI-4: Arabidopsis 57.0 1.5E+02 0.0032 26.7 13.7 60 152-211 203-262 (269)
266 KOG0963 Transcription factor/C 56.9 1.7E+02 0.0036 29.3 11.3 61 147-207 187-251 (629)
267 TIGR01069 mutS2 MutS2 family p 56.8 1.8E+02 0.004 29.8 12.1 18 177-194 572-589 (771)
268 PRK14163 heat shock protein Gr 56.8 51 0.0011 28.5 7.1 37 152-188 43-79 (214)
269 PRK14155 heat shock protein Gr 56.8 31 0.00067 29.7 5.7 39 154-192 18-56 (208)
270 PF04420 CHD5: CHD5-like prote 56.8 40 0.00086 27.5 6.2 22 189-210 71-92 (161)
271 PF10211 Ax_dynein_light: Axon 56.7 1.2E+02 0.0026 25.5 11.0 57 153-209 124-181 (189)
272 PF04799 Fzo_mitofusin: fzo-li 56.7 1.1E+02 0.0024 25.6 8.8 43 147-193 125-167 (171)
273 PRK14147 heat shock protein Gr 56.7 47 0.001 27.6 6.7 36 154-189 23-58 (172)
274 TIGR03545 conserved hypothetic 56.4 1.4E+02 0.0031 29.4 10.9 12 25-36 29-40 (555)
275 KOG0249 LAR-interacting protei 56.3 1.5E+02 0.0033 30.4 11.0 39 173-211 219-257 (916)
276 PF12072 DUF3552: Domain of un 56.2 1.2E+02 0.0026 25.5 13.5 16 183-198 119-134 (201)
277 PF10224 DUF2205: Predicted co 56.1 76 0.0017 23.2 6.9 44 155-205 15-58 (80)
278 PF10481 CENP-F_N: Cenp-F N-te 56.1 1.5E+02 0.0034 26.7 10.0 75 145-219 63-137 (307)
279 TIGR03007 pepcterm_ChnLen poly 55.9 1.8E+02 0.004 27.5 13.0 51 154-204 329-382 (498)
280 PF05546 She9_MDM33: She9 / Md 55.9 66 0.0014 27.8 7.5 55 157-218 33-88 (207)
281 PF06548 Kinesin-related: Kine 55.7 1.6E+02 0.0035 28.4 10.6 31 141-171 384-425 (488)
282 PRK00106 hypothetical protein; 55.5 1.9E+02 0.0042 28.4 11.6 23 176-198 131-153 (535)
283 PF09728 Taxilin: Myosin-like 55.5 1.6E+02 0.0035 26.7 11.6 52 158-209 239-290 (309)
284 PF13815 Dzip-like_N: Iguana/D 55.4 47 0.001 25.6 6.1 11 24-34 9-19 (118)
285 PRK14151 heat shock protein Gr 55.3 69 0.0015 26.8 7.5 39 154-192 25-63 (176)
286 PF06667 PspB: Phage shock pro 55.3 18 0.0004 26.1 3.5 16 8-23 5-20 (75)
287 KOG4643 Uncharacterized coiled 55.3 1.6E+02 0.0034 31.4 11.1 51 154-204 486-536 (1195)
288 PF05667 DUF812: Protein of un 55.1 72 0.0016 31.7 8.7 38 158-195 330-367 (594)
289 COG5185 HEC1 Protein involved 54.8 2.2E+02 0.0047 27.9 11.5 61 146-206 334-397 (622)
290 cd07653 F-BAR_CIP4-like The F- 54.7 1.1E+02 0.0023 26.3 8.9 41 171-211 113-153 (251)
291 KOG0976 Rho/Rac1-interacting s 54.5 1.5E+02 0.0033 30.9 10.7 19 189-207 181-199 (1265)
292 smart00338 BRLZ basic region l 54.3 66 0.0014 21.8 6.2 29 179-207 35-63 (65)
293 cd07676 F-BAR_FBP17 The F-BAR 54.2 1.3E+02 0.0028 26.4 9.4 47 171-217 115-161 (253)
294 PF04645 DUF603: Protein of un 54.1 69 0.0015 26.9 7.1 13 154-166 117-129 (181)
295 cd07627 BAR_Vps5p The Bin/Amph 53.9 1.3E+02 0.0027 25.6 9.1 24 157-180 144-167 (216)
296 PF13805 Pil1: Eisosome compon 53.9 1.4E+02 0.0031 26.8 9.6 26 166-191 168-193 (271)
297 PF04977 DivIC: Septum formati 53.8 38 0.00082 23.5 5.0 11 179-189 40-50 (80)
298 PF08647 BRE1: BRE1 E3 ubiquit 53.8 90 0.0019 23.2 10.5 45 152-196 27-71 (96)
299 PF14197 Cep57_CLD_2: Centroso 53.6 77 0.0017 22.4 8.3 11 120-130 4-14 (69)
300 KOG4674 Uncharacterized conser 53.6 2.7E+02 0.0059 31.5 13.2 31 157-187 725-755 (1822)
301 PRK00295 hypothetical protein; 53.4 76 0.0016 22.2 7.2 30 179-208 21-50 (68)
302 PRK00106 hypothetical protein; 53.4 1.3E+02 0.0028 29.6 10.0 40 165-204 113-152 (535)
303 PF05546 She9_MDM33: She9 / Md 53.4 66 0.0014 27.7 7.1 50 150-199 33-82 (207)
304 PRK14154 heat shock protein Gr 53.3 74 0.0016 27.4 7.5 38 154-191 57-94 (208)
305 PF02183 HALZ: Homeobox associ 53.2 53 0.0012 21.3 5.1 30 178-207 13-42 (45)
306 KOG4052 Uncharacterized conser 53.0 17 0.00038 30.3 3.4 23 178-200 146-168 (190)
307 PF13600 DUF4140: N-terminal d 52.9 31 0.00067 25.6 4.6 33 157-189 71-103 (104)
308 PF05377 FlaC_arch: Flagella a 52.9 67 0.0015 21.9 5.7 18 179-196 16-33 (55)
309 cd07605 I-BAR_IMD Inverse (I)- 52.7 1.1E+02 0.0025 26.4 8.6 15 49-63 39-53 (223)
310 PF09738 DUF2051: Double stran 52.7 1.1E+02 0.0024 27.9 8.8 50 158-207 114-163 (302)
311 KOG0978 E3 ubiquitin ligase in 52.6 2.4E+02 0.0053 28.7 11.9 53 160-212 563-622 (698)
312 PF11262 Tho2: Transcription f 52.4 50 0.0011 29.7 6.7 31 178-208 54-84 (298)
313 PF04728 LPP: Lipoprotein leuc 52.2 74 0.0016 21.8 7.6 25 147-171 8-32 (56)
314 PLN02320 seryl-tRNA synthetase 52.1 1.1E+02 0.0023 30.0 9.1 23 180-202 140-162 (502)
315 PLN03229 acetyl-coenzyme A car 52.1 1.5E+02 0.0032 30.5 10.2 61 160-220 670-748 (762)
316 KOG1029 Endocytic adaptor prot 52.0 3E+02 0.0065 28.7 12.3 36 160-195 546-581 (1118)
317 PLN02678 seryl-tRNA synthetase 51.4 62 0.0013 31.0 7.4 25 105-129 31-55 (448)
318 cd07657 F-BAR_Fes_Fer The F-BA 51.0 1.3E+02 0.0028 26.2 8.8 41 173-213 115-155 (237)
319 PF15066 CAGE1: Cancer-associa 50.9 2.2E+02 0.0047 27.7 10.7 9 55-63 359-367 (527)
320 PRK04325 hypothetical protein; 50.8 89 0.0019 22.3 7.5 31 179-209 25-55 (74)
321 PRK14160 heat shock protein Gr 50.6 1.3E+02 0.0028 25.9 8.6 41 147-187 59-99 (211)
322 PRK00409 recombination and DNA 50.5 3E+02 0.0065 28.3 13.4 15 179-193 579-593 (782)
323 KOG1937 Uncharacterized conser 50.3 99 0.0021 29.9 8.3 46 153-207 473-518 (521)
324 TIGR01061 parC_Gpos DNA topois 50.3 2.5E+02 0.0054 28.7 11.8 24 94-118 371-394 (738)
325 PRK05560 DNA gyrase subunit A; 50.2 2.5E+02 0.0055 28.9 12.0 23 94-117 374-396 (805)
326 PF03245 Phage_lysis: Bacterio 50.2 1.2E+02 0.0026 23.7 8.3 26 190-215 41-66 (125)
327 COG5244 NIP100 Dynactin comple 50.2 56 0.0012 31.8 6.7 58 154-214 524-597 (669)
328 KOG0964 Structural maintenance 50.2 1.8E+02 0.004 30.9 10.7 52 154-205 416-467 (1200)
329 PF07334 IFP_35_N: Interferon- 50.1 35 0.00076 24.8 4.2 19 149-167 7-25 (76)
330 KOG0977 Nuclear envelope prote 49.9 2.5E+02 0.0055 27.7 11.3 19 112-130 111-129 (546)
331 PRK10929 putative mechanosensi 49.8 1.2E+02 0.0026 32.5 9.8 32 151-182 60-91 (1109)
332 PF09730 BicD: Microtubule-ass 49.7 2.6E+02 0.0056 28.6 11.6 12 178-189 105-116 (717)
333 PRK03598 putative efflux pump 49.5 1.6E+02 0.0034 26.3 9.5 24 190-213 184-207 (331)
334 PF10018 Med4: Vitamin-D-recep 49.3 1.5E+02 0.0033 24.6 9.2 33 151-183 31-63 (188)
335 COG1340 Uncharacterized archae 49.1 2.1E+02 0.0045 26.0 11.2 16 178-193 201-216 (294)
336 PF05278 PEARLI-4: Arabidopsis 49.0 2E+02 0.0043 25.8 9.8 57 154-210 198-254 (269)
337 PRK14144 heat shock protein Gr 48.9 86 0.0019 26.8 7.1 35 154-188 50-84 (199)
338 TIGR01554 major_cap_HK97 phage 48.9 1.3E+02 0.0029 27.5 9.1 11 121-131 6-16 (378)
339 cd00179 SynN Syntaxin N-termin 48.8 1.3E+02 0.0027 23.5 13.0 28 180-207 84-111 (151)
340 PF04012 PspA_IM30: PspA/IM30 48.7 1.6E+02 0.0035 24.7 10.8 29 161-189 96-124 (221)
341 PF07989 Microtub_assoc: Micro 48.4 99 0.0022 22.1 7.7 58 151-208 9-67 (75)
342 TIGR00998 8a0101 efflux pump m 48.4 1.3E+02 0.0027 26.7 8.6 15 115-129 81-95 (334)
343 cd07655 F-BAR_PACSIN The F-BAR 48.3 1.4E+02 0.003 26.1 8.6 43 156-198 168-210 (258)
344 KOG4673 Transcription factor T 47.9 1.1E+02 0.0025 31.2 8.6 54 151-204 706-759 (961)
345 PF08112 ATP-synt_E_2: ATP syn 47.7 86 0.0019 21.2 5.6 29 157-198 12-40 (56)
346 TIGR00414 serS seryl-tRNA synt 47.5 1.7E+02 0.0038 27.5 9.7 24 106-129 29-52 (418)
347 PF14282 FlxA: FlxA-like prote 47.5 1.2E+02 0.0027 22.9 8.7 53 150-202 20-76 (106)
348 COG5493 Uncharacterized conser 47.5 1.5E+02 0.0033 25.6 8.3 25 190-214 87-111 (231)
349 PF05325 DUF730: Protein of un 47.5 99 0.0021 23.6 6.4 38 159-196 81-118 (122)
350 PRK10636 putative ABC transpor 47.4 89 0.0019 31.0 8.1 14 195-208 602-615 (638)
351 PRK14143 heat shock protein Gr 47.4 54 0.0012 28.8 5.8 27 181-207 78-104 (238)
352 PRK09458 pspB phage shock prot 47.4 16 0.00034 26.5 2.1 18 6-23 3-20 (75)
353 PF14193 DUF4315: Domain of un 47.4 72 0.0016 23.5 5.6 30 149-189 8-37 (83)
354 PF05483 SCP-1: Synaptonemal c 47.3 2.5E+02 0.0053 28.7 10.8 51 158-208 501-551 (786)
355 PF10779 XhlA: Haemolysin XhlA 46.9 98 0.0021 21.6 6.9 32 158-189 15-46 (71)
356 COG0497 RecN ATPase involved i 46.9 1.9E+02 0.0041 28.7 10.0 46 157-206 326-371 (557)
357 KOG1003 Actin filament-coating 46.9 1.9E+02 0.0041 24.9 9.7 55 154-208 142-196 (205)
358 PF15066 CAGE1: Cancer-associa 46.9 2.8E+02 0.0062 27.0 11.5 47 156-202 390-436 (527)
359 PRK15396 murein lipoprotein; P 46.7 1.1E+02 0.0024 22.2 6.7 10 179-188 48-57 (78)
360 PRK00373 V-type ATP synthase s 46.7 93 0.002 26.3 7.1 32 177-208 25-56 (204)
361 PF14817 HAUS5: HAUS augmin-li 46.6 1.6E+02 0.0034 29.6 9.6 47 143-189 80-126 (632)
362 KOG0979 Structural maintenance 46.4 2.4E+02 0.0052 30.0 10.9 52 157-208 305-356 (1072)
363 PF07254 DUF1434: Protein of u 46.4 69 0.0015 25.6 5.8 47 6-69 17-63 (132)
364 PRK14153 heat shock protein Gr 46.3 50 0.0011 28.1 5.3 31 178-208 41-71 (194)
365 TIGR00309 V_ATPase_subD H(+)-t 46.2 92 0.002 26.4 7.0 36 173-208 19-54 (209)
366 PF01166 TSC22: TSC-22/dip/bun 45.8 43 0.00093 23.1 3.9 30 178-207 15-44 (59)
367 PF07139 DUF1387: Protein of u 45.8 1.9E+02 0.0042 26.4 9.2 27 97-123 190-216 (302)
368 PRK14146 heat shock protein Gr 45.7 90 0.002 27.0 6.9 35 154-188 59-93 (215)
369 PRK14141 heat shock protein Gr 45.5 79 0.0017 27.2 6.5 35 154-188 36-70 (209)
370 KOG4674 Uncharacterized conser 45.2 4.2E+02 0.0092 30.1 13.1 107 102-208 953-1063(1822)
371 PRK15396 murein lipoprotein; P 45.0 1.2E+02 0.0026 22.1 7.6 16 157-172 47-62 (78)
372 TIGR02209 ftsL_broad cell divi 45.0 1.1E+02 0.0024 21.6 9.0 12 155-166 44-55 (85)
373 KOG0978 E3 ubiquitin ligase in 44.8 3.4E+02 0.0073 27.7 11.5 46 160-205 577-622 (698)
374 TIGR00606 rad50 rad50. This fa 44.5 3.4E+02 0.0074 29.5 12.4 39 158-196 890-928 (1311)
375 PRK00888 ftsB cell division pr 44.5 55 0.0012 24.9 4.9 8 156-163 48-55 (105)
376 PRK02793 phi X174 lysis protei 44.3 1.1E+02 0.0024 21.6 7.5 31 178-208 23-53 (72)
377 TIGR00634 recN DNA repair prot 44.3 3.1E+02 0.0068 26.7 12.6 35 171-205 340-374 (563)
378 PRK05431 seryl-tRNA synthetase 44.1 1.3E+02 0.0029 28.4 8.4 23 180-202 69-91 (425)
379 PF06818 Fez1: Fez1; InterPro 44.0 1.7E+02 0.0037 25.1 8.2 52 159-210 55-106 (202)
380 cd07675 F-BAR_FNBP1L The F-BAR 44.0 1.9E+02 0.004 25.6 8.7 88 111-205 124-213 (252)
381 PF15294 Leu_zip: Leucine zipp 43.8 1.1E+02 0.0023 27.7 7.2 44 146-189 129-172 (278)
382 PRK14158 heat shock protein Gr 43.7 70 0.0015 27.2 5.8 8 157-164 41-48 (194)
383 cd07652 F-BAR_Rgd1 The F-BAR ( 43.4 2.2E+02 0.0047 24.6 10.6 32 175-206 116-147 (234)
384 PLN03188 kinesin-12 family pro 43.3 4.2E+02 0.0091 29.0 12.3 18 176-193 1224-1241(1320)
385 PF05600 DUF773: Protein of un 43.0 1.7E+02 0.0037 28.5 9.1 9 180-188 484-492 (507)
386 PRK00736 hypothetical protein; 42.9 1.2E+02 0.0025 21.3 7.3 30 179-208 21-50 (68)
387 PF07136 DUF1385: Protein of u 42.8 2E+02 0.0043 25.3 8.6 22 51-72 95-116 (236)
388 PF10359 Fmp27_WPPW: RNA pol I 42.7 1.7E+02 0.0036 28.2 8.9 40 177-216 200-239 (475)
389 PF12795 MscS_porin: Mechanose 42.4 2.2E+02 0.0048 24.4 11.2 27 107-133 24-50 (240)
390 PF11853 DUF3373: Protein of u 42.4 30 0.00065 33.6 3.7 10 157-166 32-41 (489)
391 KOG4398 Predicted coiled-coil 42.3 72 0.0016 29.0 5.8 30 179-209 25-54 (359)
392 PRK11677 hypothetical protein; 42.3 1.4E+02 0.0031 23.8 7.1 13 154-166 41-53 (134)
393 PF14362 DUF4407: Domain of un 42.2 2.4E+02 0.0053 24.9 19.4 27 100-126 87-113 (301)
394 COG1422 Predicted membrane pro 42.2 1.3E+02 0.0029 25.8 7.2 31 103-133 54-84 (201)
395 PF14916 CCDC92: Coiled-coil d 42.1 53 0.0012 22.8 4.0 38 174-211 7-48 (60)
396 COG0576 GrpE Molecular chapero 42.1 1.2E+02 0.0026 25.7 7.0 33 156-188 43-75 (193)
397 PRK02119 hypothetical protein; 42.0 1.2E+02 0.0027 21.5 7.6 36 154-189 14-49 (73)
398 PF05622 HOOK: HOOK protein; 41.9 8.5 0.00019 38.7 0.0 58 150-207 364-421 (713)
399 PRK10476 multidrug resistance 41.8 2E+02 0.0043 25.8 8.9 91 114-215 86-176 (346)
400 TIGR03017 EpsF chain length de 41.8 2.9E+02 0.0063 25.6 11.6 25 178-202 343-367 (444)
401 PRK00295 hypothetical protein; 41.7 1.2E+02 0.0026 21.2 7.3 36 154-189 10-45 (68)
402 PF11471 Sugarporin_N: Maltopo 41.6 54 0.0012 22.6 4.0 27 155-181 31-57 (60)
403 PRK13553 fumarate reductase cy 41.5 2.6E+02 0.0056 25.0 11.8 62 5-66 35-99 (258)
404 PF02388 FemAB: FemAB family; 41.3 1.5E+02 0.0033 27.7 8.3 22 145-166 245-266 (406)
405 PRK11415 hypothetical protein; 41.0 58 0.0013 23.2 4.2 30 186-215 12-41 (74)
406 cd07676 F-BAR_FBP17 The F-BAR 41.0 2.3E+02 0.005 24.9 8.9 88 106-200 120-208 (253)
407 PF05325 DUF730: Protein of un 40.9 1.4E+02 0.003 22.8 6.4 21 171-191 100-120 (122)
408 PLN02320 seryl-tRNA synthetase 40.9 1.2E+02 0.0026 29.6 7.6 22 106-127 92-113 (502)
409 TIGR00219 mreC rod shape-deter 40.6 64 0.0014 28.8 5.4 17 193-209 93-109 (283)
410 KOG2927 Membrane component of 40.4 45 0.00099 31.0 4.4 12 13-24 199-211 (372)
411 PRK11147 ABC transporter ATPas 40.3 1.5E+02 0.0032 29.3 8.4 54 151-204 570-629 (635)
412 PF06637 PV-1: PV-1 protein (P 40.3 1.8E+02 0.0039 27.6 8.2 66 114-194 322-387 (442)
413 PRK05771 V-type ATP synthase s 40.2 1.2E+02 0.0026 30.1 7.8 30 100-129 93-122 (646)
414 COG5509 Uncharacterized small 40.1 72 0.0016 22.2 4.3 23 147-169 30-52 (65)
415 PRK14147 heat shock protein Gr 40.1 63 0.0014 26.9 4.9 9 154-162 30-38 (172)
416 PRK00846 hypothetical protein; 40.0 1.4E+02 0.0031 21.6 8.1 48 164-211 14-61 (77)
417 PRK02195 V-type ATP synthase s 40.0 1.3E+02 0.0029 25.4 7.0 31 178-208 25-55 (201)
418 KOG3119 Basic region leucine z 39.8 55 0.0012 29.1 4.8 20 178-197 230-249 (269)
419 COG1422 Predicted membrane pro 39.8 2.2E+02 0.0049 24.4 8.2 15 115-129 73-87 (201)
420 PRK00736 hypothetical protein; 39.5 1.3E+02 0.0029 21.0 7.1 36 154-189 10-45 (68)
421 PF12958 DUF3847: Protein of u 39.5 72 0.0016 23.7 4.6 30 160-189 5-34 (86)
422 PF12761 End3: Actin cytoskele 39.5 1.3E+02 0.0029 25.7 6.8 38 154-191 101-142 (195)
423 TIGR00219 mreC rod shape-deter 39.3 91 0.002 27.8 6.2 19 109-127 61-79 (283)
424 PHA00476 hypothetical protein 39.3 1.4E+02 0.0029 23.0 6.1 46 11-63 16-62 (110)
425 PRK15374 pathogenicity island 39.3 3.7E+02 0.008 26.7 10.5 92 94-189 78-174 (593)
426 PRK14157 heat shock protein Gr 39.2 1.2E+02 0.0025 26.6 6.6 36 154-189 82-117 (227)
427 PF05010 TACC: Transforming ac 39.1 2.5E+02 0.0054 24.1 12.2 46 161-206 159-204 (207)
428 PRK14156 heat shock protein Gr 39.1 1.2E+02 0.0026 25.4 6.4 36 154-189 32-67 (177)
429 PRK14139 heat shock protein Gr 38.8 83 0.0018 26.5 5.5 13 150-162 40-52 (185)
430 PF01025 GrpE: GrpE; InterPro 38.6 48 0.001 26.6 4.0 32 156-187 18-49 (165)
431 KOG0981 DNA topoisomerase I [R 38.5 84 0.0018 31.4 6.1 56 149-204 636-696 (759)
432 COG4477 EzrA Negative regulato 38.4 2.5E+02 0.0054 27.8 9.2 22 176-197 381-402 (570)
433 TIGR01010 BexC_CtrB_KpsE polys 38.3 3.1E+02 0.0066 24.9 9.7 19 149-167 214-232 (362)
434 KOG4196 bZIP transcription fac 38.3 1.3E+02 0.0027 24.2 6.1 28 178-205 89-116 (135)
435 PF04859 DUF641: Plant protein 38.2 2.1E+02 0.0045 22.9 9.8 28 155-189 93-120 (131)
436 PF02388 FemAB: FemAB family; 38.2 2E+02 0.0043 26.9 8.5 48 152-203 245-292 (406)
437 PF06818 Fez1: Fez1; InterPro 38.1 1.9E+02 0.0042 24.8 7.6 6 161-166 36-41 (202)
438 PF07160 DUF1395: Protein of u 37.9 2.8E+02 0.006 24.3 8.9 42 146-187 26-67 (243)
439 KOG3595 Dyneins, heavy chain [ 37.9 79 0.0017 34.6 6.4 65 154-218 932-996 (1395)
440 PF14915 CCDC144C: CCDC144C pr 37.7 3.2E+02 0.0069 25.0 9.2 48 113-170 5-52 (305)
441 PF09728 Taxilin: Myosin-like 37.6 3.1E+02 0.0068 24.8 12.0 60 145-204 240-299 (309)
442 TIGR01010 BexC_CtrB_KpsE polys 37.4 3.2E+02 0.0069 24.8 13.7 23 180-202 281-303 (362)
443 PF13815 Dzip-like_N: Iguana/D 37.3 1.4E+02 0.003 22.9 6.2 7 179-185 110-116 (118)
444 COG1792 MreC Cell shape-determ 37.2 2.3E+02 0.005 25.3 8.4 12 50-61 19-30 (284)
445 PF06160 EzrA: Septation ring 37.2 4.1E+02 0.0089 26.0 10.9 6 150-155 352-357 (560)
446 PF13118 DUF3972: Protein of u 37.0 1.3E+02 0.0028 24.0 5.9 9 178-186 114-122 (126)
447 PHA00024 IX minor coat protein 37.0 44 0.00096 20.4 2.6 16 90-105 8-23 (33)
448 KOG4005 Transcription factor X 37.0 2.4E+02 0.0051 25.1 8.1 16 177-192 111-126 (292)
449 PF05010 TACC: Transforming ac 37.0 2.7E+02 0.0059 23.9 9.5 22 182-203 81-102 (207)
450 KOG3647 Predicted coiled-coil 36.9 2.8E+02 0.0061 25.2 8.6 66 144-209 114-179 (338)
451 PF01102 Glycophorin_A: Glycop 36.8 32 0.00069 27.2 2.5 16 94-109 76-91 (122)
452 PRK10869 recombination and rep 36.8 4.2E+02 0.009 26.0 12.6 35 171-205 335-369 (553)
453 PRK12585 putative monovalent c 36.8 2.7E+02 0.0059 23.8 13.9 33 90-123 88-121 (197)
454 PF06428 Sec2p: GDP/GTP exchan 36.7 91 0.002 23.7 4.9 39 176-214 50-88 (100)
455 PF15290 Syntaphilin: Golgi-lo 36.6 1.5E+02 0.0032 26.9 6.9 18 155-172 88-105 (305)
456 cd00890 Prefoldin Prefoldin is 36.5 1.2E+02 0.0025 23.0 5.7 24 105-128 21-44 (129)
457 PF06645 SPC12: Microsomal sig 36.4 28 0.0006 25.0 1.9 22 3-24 35-57 (76)
458 PRK09841 cryptic autophosphory 36.2 4.7E+02 0.01 26.4 12.7 29 176-204 369-397 (726)
459 PF10498 IFT57: Intra-flagella 36.2 3.6E+02 0.0078 25.1 15.4 53 157-209 267-319 (359)
460 TIGR01063 gyrA DNA gyrase, A s 36.2 4.8E+02 0.01 27.0 11.4 23 94-117 371-393 (800)
461 PLN02943 aminoacyl-tRNA ligase 35.8 1.5E+02 0.0033 31.1 8.0 25 149-173 889-913 (958)
462 PRK14156 heat shock protein Gr 35.7 80 0.0017 26.5 4.9 31 178-208 35-65 (177)
463 PF03839 Sec62: Translocation 35.7 1E+02 0.0022 26.9 5.7 54 1-64 109-162 (224)
464 PF11577 NEMO: NF-kappa-B esse 35.7 1.6E+02 0.0035 20.8 7.7 54 145-208 2-55 (68)
465 COG3524 KpsE Capsule polysacch 35.6 2.2E+02 0.0048 26.3 7.9 81 109-210 225-307 (372)
466 PRK09343 prefoldin subunit bet 35.5 1.9E+02 0.004 22.4 6.7 48 153-200 68-115 (121)
467 PF14735 HAUS4: HAUS augmin-li 35.5 2E+02 0.0043 25.3 7.5 62 140-212 169-230 (238)
468 PRK04406 hypothetical protein; 35.5 1.7E+02 0.0036 21.0 7.9 53 143-198 5-57 (75)
469 PF15397 DUF4618: Domain of un 35.3 3.3E+02 0.0071 24.3 13.0 102 107-210 34-146 (258)
470 KOG2391 Vacuolar sorting prote 35.3 3.2E+02 0.007 25.5 9.0 68 145-212 221-288 (365)
471 KOG4196 bZIP transcription fac 35.2 1.7E+02 0.0037 23.5 6.3 41 162-205 76-116 (135)
472 PF09766 FimP: Fms-interacting 35.2 1.6E+02 0.0034 27.3 7.2 50 145-194 104-153 (355)
473 PF15290 Syntaphilin: Golgi-lo 35.2 3.5E+02 0.0075 24.6 9.2 106 112-217 59-175 (305)
474 KOG0962 DNA repair protein RAD 35.2 3.2E+02 0.0069 29.9 10.1 90 106-199 201-290 (1294)
475 TIGR02976 phageshock_pspB phag 35.0 60 0.0013 23.4 3.5 32 6-40 3-34 (75)
476 PRK14472 F0F1 ATP synthase sub 34.9 2.5E+02 0.0054 22.8 12.6 107 95-209 25-136 (175)
477 PF05531 NPV_P10: Nucleopolyhe 34.9 1.8E+02 0.0038 21.1 7.1 56 149-208 11-66 (75)
478 PF01813 ATP-synt_D: ATP synth 34.9 1.8E+02 0.0038 24.2 7.0 46 164-209 2-47 (196)
479 PF02646 RmuC: RmuC family; I 34.8 3.1E+02 0.0068 24.5 9.0 61 145-208 2-65 (304)
480 PF09304 Cortex-I_coil: Cortex 34.7 2.2E+02 0.0047 22.1 13.8 87 107-208 16-103 (107)
481 smart00340 HALZ homeobox assoc 34.7 1E+02 0.0022 19.9 4.1 32 173-204 1-32 (44)
482 PF05008 V-SNARE: Vesicle tran 34.7 1.6E+02 0.0034 20.5 7.7 55 148-202 24-79 (79)
483 PF11544 Spc42p: Spindle pole 34.6 1.8E+02 0.0039 21.1 7.0 72 142-214 5-76 (76)
484 KOG2051 Nonsense-mediated mRNA 34.6 4.8E+02 0.01 28.0 11.0 94 11-114 647-757 (1128)
485 PF09340 NuA4: Histone acetylt 34.6 80 0.0017 22.9 4.2 32 162-193 1-32 (80)
486 PF07334 IFP_35_N: Interferon- 34.4 85 0.0018 22.8 4.2 33 151-183 2-34 (76)
487 PF06698 DUF1192: Protein of u 34.3 1.5E+02 0.0032 20.5 5.2 34 144-177 23-56 (59)
488 KOG2129 Uncharacterized conser 34.2 4.4E+02 0.0095 25.5 11.2 95 109-213 203-308 (552)
489 PF13514 AAA_27: AAA domain 34.1 4.7E+02 0.01 27.8 11.4 109 106-214 846-956 (1111)
490 PF09763 Sec3_C: Exocyst compl 34.1 2.3E+02 0.005 28.4 8.7 70 139-208 27-99 (701)
491 PF08654 DASH_Dad2: DASH compl 34.0 1.8E+02 0.0039 22.1 6.2 41 161-205 2-42 (103)
492 PF11336 DUF3138: Protein of u 34.0 1.1E+02 0.0023 29.6 5.9 60 139-201 22-107 (514)
493 PF05615 THOC7: Tho complex su 33.9 2.3E+02 0.005 22.1 12.4 101 105-213 21-131 (139)
494 KOG3647 Predicted coiled-coil 33.5 3.7E+02 0.008 24.4 10.9 94 102-205 68-161 (338)
495 cd00890 Prefoldin Prefoldin is 33.5 1.5E+02 0.0033 22.3 5.9 43 167-209 84-126 (129)
496 PF07028 DUF1319: Protein of u 33.4 2E+02 0.0043 22.9 6.5 43 151-193 41-83 (126)
497 TIGR01000 bacteriocin_acc bact 33.4 2.5E+02 0.0053 26.5 8.4 68 150-217 237-317 (457)
498 COG0172 SerS Seryl-tRNA synthe 33.4 1.3E+02 0.0028 28.8 6.4 77 103-182 25-101 (429)
499 PRK09973 putative outer membra 33.3 2E+02 0.0044 21.3 6.7 46 157-202 25-70 (85)
500 PF10167 NEP: Uncharacterised 33.3 2.4E+02 0.0051 22.1 7.3 72 151-223 46-117 (118)
No 1
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=100.00 E-value=3e-47 Score=322.86 Aligned_cols=207 Identities=31% Similarity=0.421 Sum_probs=166.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhcchh-HHHH-HHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHhHHHHHHhhhhcccccCCC
Q 027451 1 MQQLLFTVMFSEMALIMVLLFKTP-LRKL-LIMSLDRVKRGR-GPVVVKTVAGTVLVMLISSVYNIMMIQKRWIDDEGAV 77 (223)
Q Consensus 1 ~~~lvf~~L~~Em~~~llLvlPlP-~R~~-~~~~l~~~~~~r-~~~~~~~~~~~l~vlF~Dai~~~~k~~~~~~~~~~~~ 77 (223)
||++||++||+||+++++||+|+| .||. ++....+...++ +.+++.+++++++++|+|||+++++|...+.....++
T Consensus 1 ~~tlvf~iL~~Eial~~iL~Lpip~r~~~~~~~~~~~~~~~~~~~~~i~~~~~villlfiDsvr~i~~~~~~~~~~~n~~ 80 (216)
T KOG1962|consen 1 YWTLVFTILYAEIALFLILLLPIPPRRRRKIFKDRLKSGLAPQVLKTIATTMIVILLLFIDSVRRIQKYVSEYGSMANPT 80 (216)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCc
Confidence 799999999999999999999997 4444 334444555555 8899999999999999999999999988753321233
Q ss_pred CCch--hHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHH
Q 027451 78 VNPT--DQVLLANHLLE--ATLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTT 153 (223)
Q Consensus 78 ~~~~--~~~~~r~~~~q--~YIsGF~LFL~lvI~R~~~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~ 153 (223)
++|. .+.++..|+.| .|||||+|||||||+|+|+++++++.++++ +.++++++.+.+..+..+ .+.+++++
T Consensus 81 ~~~~a~~~~~~~l~raqrn~YisGf~LFL~lvI~R~~~ll~~l~~l~~~-~~~~~~~~~lk~~~~~~~----~~~~~~~~ 155 (216)
T KOG1962|consen 81 DQPLARTHLLEALFRAQRNLYISGFVLFLSLVIRRLHTLLRELATLRAN-EKAMKENEALKKQLENSS----KLEEENDK 155 (216)
T ss_pred cchHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhhhccc----chhhhHHH
Confidence 4443 56777766665 599999999999999999999999999996 555554444333211111 14556667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhcc
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDW 212 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~ 212 (223)
..++.++|+.+++++++++++++++.++|+||++++++|||||++||++||++++.+..
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~~~ 214 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESGGK 214 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhccCC
Confidence 78899999999999999999999999999999999999999999999999999987653
No 2
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=100.00 E-value=8.6e-43 Score=293.32 Aligned_cols=180 Identities=29% Similarity=0.468 Sum_probs=147.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcchh--HHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHhHHHHHHhhhhcccccCCCC
Q 027451 2 QQLLFTVMFSEMALIMVLLFKTP--LRKLLIMSLDRV-KRGRGPVVVKTVAGTVLVMLISSVYNIMMIQKRWIDDEGAVV 78 (223)
Q Consensus 2 ~~lvf~~L~~Em~~~llLvlPlP--~R~~~~~~l~~~-~~~r~~~~~~~~~~~l~vlF~Dai~~~~k~~~~~~~~~~~~~ 78 (223)
|++||++|++||+++++||+|+| +|+.++++++.. ..+++++++++++++++++|+|||++|+||+.++++..+++.
T Consensus 5 ~~lvf~~L~~Ei~~~~lL~lPlp~~~R~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lf~ds~~~~~k~~~~~~~~~~~~~ 84 (192)
T PF05529_consen 5 WSLVFGLLYAEIAVLLLLVLPLPSPIRRKIFKFLDKSFFSGKFKTVFKILLAILLLLFLDSIRRMYKYSSEYEEAKDDHP 84 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCC
Confidence 79999999999999999999995 998999988854 455699999999999999999999999999987654211222
Q ss_pred --C-chhHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHH
Q 027451 79 --N-PTDQVLLANHLLE--ATLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTT 153 (223)
Q Consensus 79 --~-~~~~~~~r~~~~q--~YIsGF~LFL~lvI~R~~~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~ 153 (223)
+ +.++++|++||+| +|||||+|||++||+|+++++.+++.++++.+++.+|+++++++.. ..
T Consensus 85 ~~~~~~~~~~~~~fraQRN~YIsGf~LfL~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~-------~~------ 151 (192)
T PF05529_consen 85 NPDRTEDQVLAKKFRAQRNMYISGFALFLSLVIRRVHSLIKELIKLEEKLEALKKQAESASEAAE-------KL------ 151 (192)
T ss_pred CccchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hh------
Confidence 2 3588899999999 8999999999999999999999999999999999999887764221 10
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHH
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYD 194 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYD 194 (223)
..++.++++.|+++.+++++++++|+++||||++|+++|||
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 12233444555555555555666789999999999999998
No 3
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.7e-33 Score=230.73 Aligned_cols=173 Identities=21% Similarity=0.293 Sum_probs=133.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcchh--HHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHhHHHHHHhhhhcccccCCCC
Q 027451 2 QQLLFTVMFSEMALIMVLLFKTP--LRKLLIMSLDRVKRGR-GPVVVKTVAGTVLVMLISSVYNIMMIQKRWIDDEGAVV 78 (223)
Q Consensus 2 ~~lvf~~L~~Em~~~llLvlPlP--~R~~~~~~l~~~~~~r-~~~~~~~~~~~l~vlF~Dai~~~~k~~~~~~~~~~~~~ 78 (223)
|++||.+|++||++|++|+||+| .||++++.++.++..+ ++++++++++++++||+|||+|+++++.+.....+...
T Consensus 5 ~~lvfslL~vEm~~f~il~LPlp~r~RR~l~~~~~~~~~~~~~k~il~i~~~~IllLFiDS~~Rv~rv~~~~nl~~a~~n 84 (192)
T COG5374 5 YTLVFSLLVVEMVMFFILVLPLPKRLRRSLMKLYSTSKVYRGFKHILKITFIFILLLFIDSWKRVYRVSKEANLYSASIN 84 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhcccccc
Confidence 78999999999999999999999 8899999999777665 99999999999999999999999999988654321111
Q ss_pred C---chhHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHH
Q 027451 79 N---PTDQVLLANHLLE--ATLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTT 153 (223)
Q Consensus 79 ~---~~~~~~~r~~~~q--~YIsGF~LFL~lvI~R~~~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~ 153 (223)
+ ...++++|+||+| ||||||+|||++|+.|+++++.+++..++... ++.|.
T Consensus 85 ~~~~~~i~~las~fy~qrnmyl~g~~L~l~~~v~~~~~~v~~ml~~~~~~~--------------~k~D~---------- 140 (192)
T COG5374 85 NYAVTRIAVLASRFYAQRNMYLSGSALFLSIVVMRVMSIVEEMLEENAKKG--------------GKIDK---------- 140 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--------------cchhh----------
Confidence 1 1268999999999 89999999999999999999999998887222 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
.+++..+||+ ++.++..+++.|+|+-+++.++||... ++.++.++
T Consensus 141 ~eA~~t~lk~-------~~~~~~~~le~Lqkn~~~~~k~~d~~n----e~~~~v~~ 185 (192)
T COG5374 141 MEADSTDLKA-------RLRKAQILLEGLQKNQEELFKLLDKYN----ELREQVQK 185 (192)
T ss_pred hhcchHHHHH-------HHhhhhHHHHHHHHHHHHHHHHHHHHh----HHHHHHHH
Confidence 1122233443 444555678999998888777776554 44444443
No 4
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=98.80 E-value=5.4e-07 Score=77.28 Aligned_cols=158 Identities=23% Similarity=0.300 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhcccccCCCCCchhHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027451 45 VKTVAGTVLVMLISSVYNIMMIQKRWIDDEGAVVNPTDQVLLANHLLE-ATLMGASLFLAFMIDRLHHYIRELRIRRKTM 123 (223)
Q Consensus 45 ~~~~~~~l~vlF~Dai~~~~k~~~~~~~~~~~~~~~~~~~~~r~~~~q-~YIsGF~LFL~lvI~R~~~li~~l~~~~~~~ 123 (223)
.++++++++++++--+-.+++++...... ++..+|+++..++.++.. +|.+++-+|++=++==+.-+|.++..+-..+
T Consensus 45 ~~~i~~~~~villlfiDsvr~i~~~~~~~-~~~~n~~~~~~a~~~~~~~l~raqrn~YisGf~LFL~lvI~R~~~ll~~l 123 (216)
T KOG1962|consen 45 LKTIATTMIVILLLFIDSVRRIQKYVSEY-GSMANPTDQPLARTHLLEALFRAQRNLYISGFVLFLSLVIRRLHTLLREL 123 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hcccCCccchHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 35566788899999999999999987666 566789999999988888 7999999999866666667777787777766
Q ss_pred HHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 027451 124 EAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNL 203 (223)
Q Consensus 124 ~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l 203 (223)
..++.+ +.+.+ ..+..+...+.-..+.+|..+++.+++.+++++++-..+++...++.+.+.+--+++.+||..|
T Consensus 124 ~~l~~~-~~~~~----~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrL 198 (216)
T KOG1962|consen 124 ATLRAN-EKAMK----ENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRL 198 (216)
T ss_pred HHHHhh-HHHHH----HHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 666543 11111 1111222211112256778889999999999999999999999999999999999999999998
Q ss_pred HHhHh
Q 027451 204 RNQLQ 208 (223)
Q Consensus 204 ~~~l~ 208 (223)
-++-+
T Consensus 199 lee~~ 203 (216)
T KOG1962|consen 199 LEEYS 203 (216)
T ss_pred HHHHH
Confidence 76544
No 5
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.67 E-value=0.063 Score=43.27 Aligned_cols=95 Identities=22% Similarity=0.306 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 027451 105 MIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRK 184 (223)
Q Consensus 105 vI~R~~~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKk 184 (223)
||+-++.+|.....-....+.+.. +......+++.+...+++|+.+++.++.++..++.+..++++
T Consensus 36 vin~i~~Ll~~~~r~~~~~e~l~~--------------~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~ 101 (151)
T PF11559_consen 36 VINCIYDLLQQRDRDMEQREDLSD--------------KLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQK 101 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777666555555554432 333444556667777888888888888888777777888888
Q ss_pred hHhhHHHHHHHHHHHHHHHHHhHhhhccc
Q 027451 185 QSEGFLFEYDRLLEENQNLRNQLQSLDWR 213 (223)
Q Consensus 185 Qae~l~~EYDrL~~e~~~l~~~l~~~~~~ 213 (223)
+...+..---...+|.++++..++.-...
T Consensus 102 ~~~~~~~~~k~~kee~~klk~~~~~~~tq 130 (151)
T PF11559_consen 102 QLKSLEAKLKQEKEELQKLKNQLQQRKTQ 130 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777777777777777766654433
No 6
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.48 E-value=0.074 Score=49.57 Aligned_cols=115 Identities=19% Similarity=0.276 Sum_probs=80.5
Q ss_pred HHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHH
Q 027451 93 ATLMGASLFLAFMIDR-LHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKE 171 (223)
Q Consensus 93 ~YIsGF~LFL~lvI~R-~~~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~e 171 (223)
|-||..+|-..|+++| +.+=|.++.....++++++.+.+.++..+..-..|-++...|....++|-+..+.++....++
T Consensus 52 ~liSA~tLailf~~~~~lr~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n 131 (499)
T COG4372 52 MLISAATLAILFLLNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQN 131 (499)
T ss_pred chhhHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777778877777776 456677888888888888887666554221111111222334455566777778888888889
Q ss_pred HHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 172 ANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 172 l~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
+.+|..++.-+.+|+.+++.+.-.|.+++.++-.+.
T Consensus 132 ~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~ 167 (499)
T COG4372 132 LAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQA 167 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888877777776654333
No 7
>PRK11637 AmiB activator; Provisional
Probab=96.30 E-value=0.12 Score=48.52 Aligned_cols=58 Identities=9% Similarity=-0.012 Sum_probs=34.4
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 027451 146 ALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNL 203 (223)
Q Consensus 146 ~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l 203 (223)
...+++..+..+++.++.++...+.++...+.+++.+.++.+.++.+.+...+.....
T Consensus 72 ~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 72 SLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666666666666666666666666666666666666665555443
No 8
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.28 E-value=0.011 Score=38.66 Aligned_cols=36 Identities=36% Similarity=0.523 Sum_probs=32.2
Q ss_pred hhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhc
Q 027451 176 ETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLD 211 (223)
Q Consensus 176 ~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~ 211 (223)
|.|-++||.+.+.|..+||+|..|++.|+.++...-
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999887543
No 9
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.32 E-value=1.2 Score=43.59 Aligned_cols=58 Identities=28% Similarity=0.338 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH---HHHHHHHHHHHHHHHHhHhhhc
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGF---LFEYDRLLEENQNLRNQLQSLD 211 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l---~~EYDrL~~e~~~l~~~l~~~~ 211 (223)
..++++.|+.|++.++.|+++-+.+.+.||+|.++. -.++.|..-|.++++..+..+.
T Consensus 292 ~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~ 352 (581)
T KOG0995|consen 292 MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQ 352 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999999999999887 5678888888888887776554
No 10
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.24 E-value=0.74 Score=41.02 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 027451 105 MIDRLHHYIRELRIRRKTMEAIKNQSRGFE 134 (223)
Q Consensus 105 vI~R~~~li~~l~~~~~~~~al~kQa~~~~ 134 (223)
.-+|+.++|.+...++.....+..+.....
T Consensus 9 LNdRla~YIekVr~LE~~N~~Le~~i~~~~ 38 (312)
T PF00038_consen 9 LNDRLASYIEKVRFLEQENKRLESEIEELR 38 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 456788888888888887777776655444
No 11
>PRK09039 hypothetical protein; Validated
Probab=95.01 E-value=1.8 Score=39.79 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHH
Q 027451 153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLL 197 (223)
Q Consensus 153 ~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~ 197 (223)
.++.+++.|+.++...+.+|..++......+.|.+.+..+-+..+
T Consensus 141 ~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 141 LLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555554444444444444444444444444444443
No 12
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.56 E-value=0.4 Score=40.33 Aligned_cols=65 Identities=31% Similarity=0.385 Sum_probs=52.3
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 143 EIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 143 ~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
....+..++..+..++..|+.+++++.+.+.....++.+|.-|..-++....+|.+||..|=+..
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777888888888888888888888888888888888888888888888888875544
No 13
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.55 E-value=4.7 Score=38.84 Aligned_cols=56 Identities=29% Similarity=0.383 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH---HHHHHHHHHHHHHHHHhHhhhc
Q 027451 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGF---LFEYDRLLEENQNLRNQLQSLD 211 (223)
Q Consensus 156 ~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l---~~EYDrL~~e~~~l~~~l~~~~ 211 (223)
..+++|+.+++.++.+++.-+.+.+.|++|.++. ..+|.....|.++|-..|+++.
T Consensus 330 g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~ 388 (622)
T COG5185 330 GKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKIN 388 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999999998765 3456556666666666665544
No 14
>PRK11637 AmiB activator; Provisional
Probab=94.43 E-value=0.82 Score=42.94 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHH
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEEN 200 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~ 200 (223)
+++.+..+++..+.++...+.+++.+..+.+.++.+-+.+.++.
T Consensus 76 ~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 76 QLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333
No 15
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.24 E-value=0.95 Score=38.45 Aligned_cols=9 Identities=11% Similarity=0.434 Sum_probs=3.5
Q ss_pred HHHHHhccc
Q 027451 123 MEAIKNQSR 131 (223)
Q Consensus 123 ~~al~kQa~ 131 (223)
...+.+|.+
T Consensus 45 ~~~L~~q~~ 53 (193)
T PF14662_consen 45 ITDLRKQLK 53 (193)
T ss_pred HHHHHHHHH
Confidence 333444433
No 16
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=93.37 E-value=0.81 Score=37.49 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHhHhhHHHHHHHHHHHHHH
Q 027451 154 LKLKLKDLESELETKSKEANAA---ETNAVALRKQSEGFLFEYDRLLEENQN 202 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~---~~d~~aLKkQae~l~~EYDrL~~e~~~ 202 (223)
..++.+.++.+|+..++.++.- ..|.+.|++|++.++.+|+.-.++|+.
T Consensus 25 ~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~ 76 (155)
T PF06810_consen 25 VKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEA 76 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666554443 459999999999999999977777764
No 17
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.24 E-value=3.3 Score=32.73 Aligned_cols=60 Identities=25% Similarity=0.370 Sum_probs=35.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 150 QMTTLKLKLKDLESELETKSKEANAAE----TNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~el~~~~~el~~~~----~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
+...+..++..|+.+.+.....+..++ .....|.++.+.+..-++.|.+.|.-|-++++.
T Consensus 67 e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 67 ELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333444444444444444443332 234567777788888888888777778888764
No 18
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.85 E-value=1.9 Score=38.48 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=5.5
Q ss_pred HHHHHHHHHhHHHH
Q 027451 88 NHLLEATLMGASLF 101 (223)
Q Consensus 88 ~~~~q~YIsGF~LF 101 (223)
|.++-+-+.+++.+
T Consensus 3 kk~~~a~~~s~v~~ 16 (265)
T COG3883 3 KKILLAVLLSLVII 16 (265)
T ss_pred hHHHHHHHHHHHHH
Confidence 33444333333333
No 19
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.85 E-value=2.2 Score=37.48 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=16.3
Q ss_pred hhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 176 ETNAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 176 ~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
+.++++.+.+...+..|-.++.++.+++++++
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i 126 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEI 126 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555544443
No 20
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.68 E-value=1.2 Score=38.16 Aligned_cols=20 Identities=0% Similarity=0.046 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 027451 110 HHYIRELRIRRKTMEAIKNQ 129 (223)
Q Consensus 110 ~~li~~l~~~~~~~~al~kQ 129 (223)
-+...++..++.+++.++.+
T Consensus 89 p~~~~rlp~le~el~~l~~~ 108 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDK 108 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555443
No 21
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.65 E-value=2.5 Score=40.07 Aligned_cols=94 Identities=26% Similarity=0.303 Sum_probs=45.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 027451 90 LLEATLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKS 169 (223)
Q Consensus 90 ~~q~YIsGF~LFL~lvI~R~~~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~ 169 (223)
+...-++|++++.+++ ....-.++-..+.++++..+. .....++-+.+.+++++++.++...+
T Consensus 17 ~~~~~l~~~~~~~s~s---~~a~~~~l~q~q~ei~~~~~~--------------i~~~~~~~~kL~~~lk~~e~~i~~~~ 79 (420)
T COG4942 17 LLASLLSAAVLAAAFS---AAADDKQLKQIQKEIAALEKK--------------IREQQDQRAKLEKQLKSLETEIASLE 79 (420)
T ss_pred HHHHHHHhcccccchh---HHhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566777777766 333324555555555544332 11222222334444555555555555
Q ss_pred HHHHHhhhHHHHHHHhHhhHHHHHHHHHHHH
Q 027451 170 KEANAAETNAVALRKQSEGFLFEYDRLLEEN 200 (223)
Q Consensus 170 ~el~~~~~d~~aLKkQae~l~~EYDrL~~e~ 200 (223)
.++...+.+++.+.++++.+...-..|..++
T Consensus 80 ~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 80 AQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5555555555555555555544444444333
No 22
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=92.64 E-value=4.6 Score=32.64 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccc
Q 027451 107 DRLHHYIRELRIRRKTMEAIKNQSRGFED 135 (223)
Q Consensus 107 ~R~~~li~~l~~~~~~~~al~kQa~~~~~ 135 (223)
+++-++=++|...+++.+.+..+++++..
T Consensus 24 ~~v~~LEreLe~~q~~~e~~~~daEn~k~ 52 (140)
T PF10473_consen 24 DHVESLERELEMSQENKECLILDAENSKA 52 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45666667777777777777776665543
No 23
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.96 E-value=3.2 Score=35.30 Aligned_cols=15 Identities=13% Similarity=-0.073 Sum_probs=6.1
Q ss_pred HHHhHHHHHHHHHHH
Q 027451 94 TLMGASLFLAFMIDR 108 (223)
Q Consensus 94 YIsGF~LFL~lvI~R 108 (223)
|-...|.=-.=.|..
T Consensus 17 YYndIT~~NL~lIks 31 (201)
T PF13851_consen 17 YYNDITLNNLELIKS 31 (201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444433333333
No 24
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.64 E-value=1.4 Score=40.06 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHH
Q 027451 159 KDLESELETKSKEANAAETNAVALRK 184 (223)
Q Consensus 159 ~~Lk~el~~~~~el~~~~~d~~aLKk 184 (223)
++|+.+-+..++++...+.+.+.++.
T Consensus 67 ~~LE~e~~~l~~el~~le~e~~~l~~ 92 (314)
T PF04111_consen 67 EELEKEREELDQELEELEEELEELDE 92 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 25
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.62 E-value=6.8 Score=32.34 Aligned_cols=56 Identities=27% Similarity=0.363 Sum_probs=31.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027451 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~ 205 (223)
.+..++...+++.+++....+++...+..++.++.+.+.++.+|+++.+..++++.
T Consensus 131 ~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 131 RLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555444445556666666666666666666555544443
No 26
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.34 E-value=5.7 Score=34.59 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=24.4
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHH
Q 027451 145 KALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFE 192 (223)
Q Consensus 145 ~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~E 192 (223)
..+..++..+..+++.|+...+..++.+...+.+++.|+.|.++...-
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555555555555555555443
No 27
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.24 E-value=3.4 Score=37.54 Aligned_cols=29 Identities=28% Similarity=0.179 Sum_probs=11.6
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
...++.+.-.++.|.+.+...++..++++
T Consensus 101 ~n~~~~~l~~~~~e~~sl~~q~~~~~~~L 129 (314)
T PF04111_consen 101 YNELQLELIEFQEERDSLKNQYEYASNQL 129 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444443333333
No 28
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=91.05 E-value=3.7 Score=36.79 Aligned_cols=63 Identities=24% Similarity=0.196 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhcccccC
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSH 216 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~~~~ 216 (223)
+....++|..++..++-.+.-.+..+..-|+|.+.|+.|--|+..|.++.|.....+|.-.+.
T Consensus 79 lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~ 141 (307)
T PF10481_consen 79 LEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNP 141 (307)
T ss_pred HHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccc
Confidence 334456778888888888888888999999999999999999999999999998888866443
No 29
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.00 E-value=3.6 Score=40.78 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhH
Q 027451 107 DRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQS 186 (223)
Q Consensus 107 ~R~~~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQa 186 (223)
.++..++.++..++.+++.+.++...+.. .+..+.+.++...+..++.+++.+++.. +.+++.+++|.
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~-----~e~i~~l~e~l~~l~~~l~~~~~~~~~~-------~~~~~~~~~~i 458 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPS-----EEQIAQLLEELGEAQNELFRSEAEIEEL-------LRQLETLKEAI 458 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 56777777788888888777776554432 1123333333333333444444444433 33444455555
Q ss_pred hhHHHHHHHH
Q 027451 187 EGFLFEYDRL 196 (223)
Q Consensus 187 e~l~~EYDrL 196 (223)
+.+.++++++
T Consensus 459 ~~~~~~~~~~ 468 (650)
T TIGR03185 459 EALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHH
Confidence 5554444444
No 30
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=90.89 E-value=4.7 Score=38.70 Aligned_cols=80 Identities=19% Similarity=0.238 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHhHh
Q 027451 109 LHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAE-TNAVALRKQSE 187 (223)
Q Consensus 109 ~~~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~-~d~~aLKkQae 187 (223)
+-.++.++-.++.+++.+.+| |+.+.+|+++|++.....+..+..+- .....+.+|.+
T Consensus 61 lrTlva~~k~~r~~~~~l~~~---------------------N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ 119 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISE---------------------NEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIE 119 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHH
Confidence 344555666666666666543 22344455555544444444443332 23445666666
Q ss_pred hHHHHHHHHHHHHHHHHHhHhh
Q 027451 188 GFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 188 ~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
.++.+-.++....+.|+.+|+.
T Consensus 120 ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 120 QLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 6766766777777777777753
No 31
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=90.75 E-value=3.2 Score=40.55 Aligned_cols=58 Identities=24% Similarity=0.339 Sum_probs=29.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
.+..+.+++..|+.++...+.++...+...+.|+.+.+.+......+..|.+.|+.+.
T Consensus 158 ~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~ 215 (546)
T PF07888_consen 158 ENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQL 215 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555555555555555555544444333
No 32
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=90.74 E-value=9.4 Score=32.33 Aligned_cols=12 Identities=0% Similarity=0.022 Sum_probs=6.4
Q ss_pred HHHHhHHHHHHh
Q 027451 55 MLISSVYNIMMI 66 (223)
Q Consensus 55 lF~Dai~~~~k~ 66 (223)
.|++.+..|.+.
T Consensus 51 ~f~~l~e~v~~l 62 (190)
T PF05266_consen 51 TFANLAEKVKKL 62 (190)
T ss_pred HHHHHHHHHHHc
Confidence 566555544443
No 33
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.72 E-value=3.8 Score=37.26 Aligned_cols=8 Identities=13% Similarity=0.027 Sum_probs=3.5
Q ss_pred hHHHHHHh
Q 027451 59 SVYNIMMI 66 (223)
Q Consensus 59 ai~~~~k~ 66 (223)
+.+++.++
T Consensus 76 ~c~EL~~~ 83 (325)
T PF08317_consen 76 SCRELKKY 83 (325)
T ss_pred HHHHHHHH
Confidence 44444333
No 34
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.49 E-value=4.4 Score=40.88 Aligned_cols=64 Identities=23% Similarity=0.298 Sum_probs=42.5
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-HhhHHHHHHHHHHHHHHHHHhHhhhc
Q 027451 147 LEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQ-SEGFLFEYDRLLEENQNLRNQLQSLD 211 (223)
Q Consensus 147 ~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQ-ae~l~~EYDrL~~e~~~l~~~l~~~~ 211 (223)
.......+..|+++|+.|++.+++.+..+|.++..|+++ -| -++|=+-|+...+-+|++-...+
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e-~~~~~e~L~~aL~amqdk~~~LE 607 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKE-SEKDTEVLMSALSAMQDKNQHLE 607 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHH
Confidence 333445567788888888888888888888888888886 33 34555555555555555544443
No 35
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=90.40 E-value=6.6 Score=33.43 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=10.7
Q ss_pred hHhhHHHHHHHHHHHHHHHHHhH
Q 027451 185 QSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 185 Qae~l~~EYDrL~~e~~~l~~~l 207 (223)
..+++++-|..|..+...||.++
T Consensus 117 e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 117 ERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHH
Confidence 33344444444444555555555
No 36
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.92 E-value=12 Score=33.30 Aligned_cols=27 Identities=15% Similarity=0.285 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027451 103 AFMIDRLHHYIRELRIRRKTMEAIKNQ 129 (223)
Q Consensus 103 ~lvI~R~~~li~~l~~~~~~~~al~kQ 129 (223)
.=.|.||..+=.+...++.....+...
T Consensus 14 a~YIekVr~LE~~N~~Le~~i~~~~~~ 40 (312)
T PF00038_consen 14 ASYIEKVRFLEQENKRLESEIEELREK 40 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 336788888888888888887777654
No 37
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=89.84 E-value=0.37 Score=44.12 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=16.6
Q ss_pred HHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 027451 93 ATLMGASLFLAF-MIDRLHHYIRELRIRRKTMEAI 126 (223)
Q Consensus 93 ~YIsGF~LFL~l-vI~R~~~li~~l~~~~~~~~al 126 (223)
+...+-.|+.|. .+...+.+......++..++.+
T Consensus 192 ~S~Aa~~Lc~WV~A~~~Y~~v~~~V~P~~~~l~~a 226 (344)
T PF12777_consen 192 ASKAAGSLCKWVRAMVKYYEVNKEVEPKRQKLEEA 226 (344)
T ss_dssp H-TTHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 445555666663 2444444444555555544443
No 38
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.82 E-value=9.5 Score=33.71 Aligned_cols=74 Identities=16% Similarity=0.204 Sum_probs=36.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHH
Q 027451 91 LEATLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSK 170 (223)
Q Consensus 91 ~q~YIsGF~LFL~lvI~R~~~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~ 170 (223)
..+-+.|+++++++-+..+..-+.--+..+. -+-.. ...+... .+.+++..+.++..+|+.|++..++
T Consensus 11 ~~~l~a~v~~~~s~~~~~~l~~~~~a~~~q~---------~k~~~--~~~~r~~-~L~~e~~s~Q~~~~~L~~ev~~~~~ 78 (247)
T COG3879 11 LEMLDAGVFWMLSISLAMLLAGVMLAAVFQT---------SKGES--VRRARDL-DLVKELRSLQKKVNTLAAEVEDLEN 78 (247)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------ccCcc--hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888877766655443332222222 10000 0011111 4444555556666666666666666
Q ss_pred HHHHhh
Q 027451 171 EANAAE 176 (223)
Q Consensus 171 el~~~~ 176 (223)
.+.+.+
T Consensus 79 ~~~s~~ 84 (247)
T COG3879 79 KLDSVR 84 (247)
T ss_pred HHHHHH
Confidence 554444
No 39
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=89.78 E-value=3.4 Score=34.68 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=9.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 027451 150 QMTTLKLKLKDLESELETKSKEA 172 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~el~~~~~el 172 (223)
.+..+..++..|+.++...+.++
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l 139 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEEL 139 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433
No 40
>PRK12704 phosphodiesterase; Provisional
Probab=89.64 E-value=12 Score=36.34 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=11.1
Q ss_pred hhhHHHHHHHhHhhHHHHHHHHHHH
Q 027451 175 AETNAVALRKQSEGFLFEYDRLLEE 199 (223)
Q Consensus 175 ~~~d~~aLKkQae~l~~EYDrL~~e 199 (223)
-+.+++..+++.+...++|+++.++
T Consensus 115 re~~Le~re~eLe~~~~~~~~~~~~ 139 (520)
T PRK12704 115 KEKELEQKQQELEKKEEELEELIEE 139 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 41
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=89.52 E-value=4.6 Score=36.07 Aligned_cols=56 Identities=27% Similarity=0.405 Sum_probs=32.4
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHH
Q 027451 147 LEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQN 202 (223)
Q Consensus 147 ~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~ 202 (223)
....+..+..+-..|...++.++.|+.++++-+++|++===..-.||+++-.|.++
T Consensus 181 ~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~ 236 (267)
T PF10234_consen 181 TQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQK 236 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 33334444455555666666666666666666666655444455677777666554
No 42
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=89.24 E-value=6.7 Score=38.41 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 027451 104 FMIDRLHHYIRELRIRRKTMEAIKNQSR 131 (223)
Q Consensus 104 lvI~R~~~li~~l~~~~~~~~al~kQa~ 131 (223)
-.-+|+..||.+...++++...|..+..
T Consensus 46 ~LNDRLA~YIekVR~LEaqN~~L~~di~ 73 (546)
T KOG0977|consen 46 ELNDRLAVYIEKVRFLEAQNRKLEHDIN 73 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888888777766543
No 43
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=89.21 E-value=2.7 Score=30.17 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=12.1
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 181 ALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 181 aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
+++.+-+.|..|..+|..|++.-+..+
T Consensus 36 ~L~~e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 36 ELKEENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555554444333
No 44
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=89.19 E-value=5.2 Score=39.15 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHH
Q 027451 155 KLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDR 195 (223)
Q Consensus 155 ~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDr 195 (223)
.+|.+.|+.+.++....+..-+.++.+|..+.....++-++
T Consensus 205 ~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~ 245 (546)
T PF07888_consen 205 KEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDK 245 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444455555555555555333333333
No 45
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=88.92 E-value=5.6 Score=28.53 Aligned_cols=16 Identities=25% Similarity=0.247 Sum_probs=6.1
Q ss_pred HHHHHHhHhhHHHHHH
Q 027451 179 AVALRKQSEGFLFEYD 194 (223)
Q Consensus 179 ~~aLKkQae~l~~EYD 194 (223)
+..++++.+....+.+
T Consensus 49 ~~~l~~~~~~~e~~~~ 64 (74)
T PF12329_consen 49 IKELKKKLEELEKELE 64 (74)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 46
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.90 E-value=12 Score=32.16 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 027451 107 DRLHHYIRELRIRRKTMEAIKNQ 129 (223)
Q Consensus 107 ~R~~~li~~l~~~~~~~~al~kQ 129 (223)
.|+-.+=.++..++++++.+..+
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 45555667777777777666544
No 47
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.51 E-value=11 Score=30.08 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHH----HHHHHHHHHHHhH
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYD----RLLEENQNLRNQL 207 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYD----rL~~e~~~l~~~l 207 (223)
...+...++.+++.....++....++.-++..+.+...-|. |---|+++|++++
T Consensus 92 ~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 92 AEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344445555555555555555556666655555544443 3333555566655
No 48
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=88.39 E-value=9.3 Score=33.28 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 027451 114 RELRIRRKTMEAI 126 (223)
Q Consensus 114 ~~l~~~~~~~~al 126 (223)
..+..+.++.+.+
T Consensus 27 ~~l~~~~~~~~~l 39 (302)
T PF10186_consen 27 SELQQLKEENEEL 39 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 49
>PHA02562 46 endonuclease subunit; Provisional
Probab=88.37 E-value=6.2 Score=37.85 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
++...+..+.+...+....+.+++.|......+..+..++.++..+++...
T Consensus 345 ~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~ 395 (562)
T PHA02562 345 KISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTK 395 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Confidence 333333344443334444445555555555555555555555555544443
No 50
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=88.05 E-value=17 Score=31.50 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
....+..|...++..+.....|+..+..|.++...+..+.+...++|..++..+.
T Consensus 174 ~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 174 YEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777788888777777788888888888888888888888888877777764
No 51
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.93 E-value=6 Score=34.66 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 153 ~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
.+.+++++|+.++++.+.+ ++.|.+.-..|+..++++..|+.+|+++...
T Consensus 153 eL~~eleele~e~ee~~er-------lk~le~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 153 ELLKELEELEAEYEEVQER-------LKRLEVENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 3444555555555554443 3444444445555666666666666665543
No 52
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=87.86 E-value=13 Score=30.57 Aligned_cols=67 Identities=25% Similarity=0.398 Sum_probs=43.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH-----HHHHHHHHHHHHHHHHhHhhhcccc
Q 027451 148 EDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGF-----LFEYDRLLEENQNLRNQLQSLDWRL 214 (223)
Q Consensus 148 ~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l-----~~EYDrL~~e~~~l~~~l~~~~~~~ 214 (223)
..++....+.+.++..++...+.+..+..+....|+.|...+ -..||+..++.+.++..+....+++
T Consensus 97 ~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~ 168 (177)
T PF13870_consen 97 KQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKV 168 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555566666665555556666666777776653 3579999898888888887665543
No 53
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=87.78 E-value=4.3 Score=33.21 Aligned_cols=62 Identities=24% Similarity=0.376 Sum_probs=27.7
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027451 143 EIKALEDQMTTLKLKLKDLESELETKSKEANAAETN--AVALRKQSEGFLFEYDRLLEENQNLR 204 (223)
Q Consensus 143 ~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d--~~aLKkQae~l~~EYDrL~~e~~~l~ 204 (223)
+...+..++..+.+++..|+.+++..+.++....+. .+-|..+.+.+..|-..+.+..+.++
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555544444333221 13344444444444444444433333
No 54
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=87.67 E-value=14 Score=30.37 Aligned_cols=56 Identities=20% Similarity=0.325 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 153 ~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
...++++.++...+...++.....++....+.+++.+..++.++.++++.+.+.++
T Consensus 127 ~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (191)
T PF04156_consen 127 SVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQ 182 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666655555666667777777777777777777766654
No 55
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=87.61 E-value=3.5 Score=33.73 Aligned_cols=64 Identities=27% Similarity=0.410 Sum_probs=48.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhH--hhHHHHHHHHHHHHHHHHHhHhhhc
Q 027451 148 EDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQS--EGFLFEYDRLLEENQNLRNQLQSLD 211 (223)
Q Consensus 148 ~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQa--e~l~~EYDrL~~e~~~l~~~l~~~~ 211 (223)
.+++..++.++.+|+.++...+.+.+..++++..|.++- +.+...-..|.+|...+..++....
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777888888888888888888888888887776 5566777778888888887777543
No 56
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.56 E-value=12 Score=37.22 Aligned_cols=27 Identities=7% Similarity=0.076 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027451 103 AFMIDRLHHYIRELRIRRKTMEAIKNQ 129 (223)
Q Consensus 103 ~lvI~R~~~li~~l~~~~~~~~al~kQ 129 (223)
|.=..|+..+|-.-..+.+.++..+.+
T Consensus 374 ~~d~~rika~VIrG~~l~eal~~~~e~ 400 (652)
T COG2433 374 WKDVERIKALVIRGYPLAEALSKVKEE 400 (652)
T ss_pred hhhHHHHHHHeecCCcHHHHHHHHHhh
Confidence 455666666666666666655555444
No 57
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=87.54 E-value=2 Score=30.13 Aligned_cols=11 Identities=27% Similarity=0.468 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 027451 156 LKLKDLESELE 166 (223)
Q Consensus 156 ~e~~~Lk~el~ 166 (223)
+++++|+.+++
T Consensus 38 ~e~~~L~~ei~ 48 (80)
T PF04977_consen 38 KENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 58
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=87.48 E-value=14 Score=29.92 Aligned_cols=34 Identities=32% Similarity=0.428 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q 027451 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (223)
Q Consensus 156 ~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l 189 (223)
+++..|+.++.....++...+.++.++++.-+++
T Consensus 52 ~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 52 AEIETLEEELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555444444444444444444333
No 59
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=87.27 E-value=17 Score=30.65 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=31.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 149 DQMTTLKLKLKDLESELETKSKEANAAETNAV-ALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 149 ~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~-aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
.++..+..+.+.|+.++...+......+...+ ......+..+.|.|-|...++.+++++..
T Consensus 127 ~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 127 EEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444555555555444443333333232 23333445566777777777777777653
No 60
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=87.14 E-value=2.7 Score=38.67 Aligned_cols=55 Identities=18% Similarity=0.090 Sum_probs=38.1
Q ss_pred hHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHhHhhHHHHHHH
Q 027451 141 SEEIKALEDQMTTLKLKLKDLESELETKSKEANA--AETNAVALRKQSEGFLFEYDR 195 (223)
Q Consensus 141 ~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~--~~~d~~aLKkQae~l~~EYDr 195 (223)
-++...+..||.+|++|+++|+.+++..+.+..+ ...+.+++..|++.+.+--|+
T Consensus 31 ~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk 87 (420)
T PF07407_consen 31 IDENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNK 87 (420)
T ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888898888888776654 234455555555555555555
No 61
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=86.94 E-value=3.6 Score=36.16 Aligned_cols=18 Identities=22% Similarity=0.111 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhHh
Q 027451 191 FEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 191 ~EYDrL~~e~~~l~~~l~ 208 (223)
+||+.|..|-+.++++..
T Consensus 89 ~e~~aL~~E~~~ak~r~~ 106 (239)
T COG1579 89 RELRALNIEIQIAKERIN 106 (239)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555554444443
No 62
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=86.86 E-value=17 Score=30.71 Aligned_cols=20 Identities=10% Similarity=-0.027 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhHHHH
Q 027451 44 VVKTVAGTVLVMLISSVYNI 63 (223)
Q Consensus 44 ~~~~~~~~l~vlF~Dai~~~ 63 (223)
+..+...+.+.-.+|+|+.+
T Consensus 43 g~A~Glm~~f~~l~e~v~~l 62 (190)
T PF05266_consen 43 GMAVGLMVTFANLAEKVKKL 62 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 34444445566666666666
No 63
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.85 E-value=4.1 Score=39.98 Aligned_cols=60 Identities=27% Similarity=0.347 Sum_probs=45.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh-h------hHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 150 QMTTLKLKLKDLESELETKSKEANAA-E------TNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~el~~~~~el~~~-~------~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
+.+.++.+|+.|-.+++....+...| + .+..+|++|.+.++.+||-.-.|..+++..+..
T Consensus 9 ~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q 75 (772)
T KOG0999|consen 9 EVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQ 75 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457778888888887776655443 2 256899999999999999999999888877753
No 64
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=86.79 E-value=7.6 Score=38.96 Aligned_cols=43 Identities=23% Similarity=0.237 Sum_probs=32.8
Q ss_pred HhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhcccccC
Q 027451 174 AAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSH 216 (223)
Q Consensus 174 ~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~~~~ 216 (223)
--++....|+||.++-.+-.+.|-.++.-|++++...+.+.+.
T Consensus 591 ~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~ 633 (786)
T PF05483_consen 591 ILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNV 633 (786)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345577889999988888888888888888888777666543
No 65
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.68 E-value=6.7 Score=31.60 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=8.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 027451 150 QMTTLKLKLKDLESELETKSK 170 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~el~~~~~ 170 (223)
+|..+..++..|+.+++..+.
T Consensus 36 EI~sL~~K~~~lE~eld~~~~ 56 (143)
T PF12718_consen 36 EITSLQKKNQQLEEELDKLEE 56 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334433333333
No 66
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=86.62 E-value=4.8 Score=32.44 Aligned_cols=75 Identities=24% Similarity=0.355 Sum_probs=46.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 027451 94 TLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEAN 173 (223)
Q Consensus 94 YIsGF~LFL~lvI~R~~~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~ 173 (223)
--.||++.|..+|.-+. ++-.+++.++.+++..-.|.+.+ ..+|.+++......+.+++.-|+.++++.+.+++
T Consensus 38 lsLgl~~LLLV~IcVig---sQ~~qlq~dl~tLretfsNFsss---t~aEvqaL~S~G~sl~~kVtSLea~lEkqqQeLk 111 (138)
T PF03954_consen 38 LSLGLSLLLLVVICVIG---SQNSQLQRDLRTLRETFSNFSSS---TLAEVQALSSQGGSLQDKVTSLEAKLEKQQQELK 111 (138)
T ss_pred HHHHHHHHHHHHHHhhc---CccHHHHHHHHHHHHHHhcccHH---HHHHHHHHHhccccHHhHcccHHHHHHHHHHHHh
Confidence 44577777766555443 35577788888887665555531 1234455554445566777778888887777765
Q ss_pred H
Q 027451 174 A 174 (223)
Q Consensus 174 ~ 174 (223)
.
T Consensus 112 A 112 (138)
T PF03954_consen 112 A 112 (138)
T ss_pred h
Confidence 4
No 67
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=86.30 E-value=6.8 Score=41.59 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=7.2
Q ss_pred HHHHHhHhhHHHHHHHHHH
Q 027451 180 VALRKQSEGFLFEYDRLLE 198 (223)
Q Consensus 180 ~aLKkQae~l~~EYDrL~~ 198 (223)
+.++.+...+..+|.++.+
T Consensus 456 ~~~~~~~~~~~~~~~~~~~ 474 (1163)
T COG1196 456 EELRDRLKELERELAELQE 474 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 68
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=86.23 E-value=18 Score=30.06 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=20.4
Q ss_pred hhHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027451 176 ETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (223)
Q Consensus 176 ~~d~~aLKkQae~l~~EYDrL~~e~~~l~~ 205 (223)
+.+++.+|++.+..+.|++.|.+..+++++
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777777777777777766666654
No 69
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=85.67 E-value=20 Score=35.64 Aligned_cols=109 Identities=13% Similarity=0.232 Sum_probs=61.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc-cchHHH-------HHhHHHhHHHHH----------
Q 027451 95 LMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKA-ASSEEI-------KALEDQMTTLKL---------- 156 (223)
Q Consensus 95 IsGF~LFL~lvI~R~~~li~~l~~~~~~~~al~kQa~~~~~~~~-~~~~~~-------~~~~~~~~~l~~---------- 156 (223)
.++=.==.++|+.-+-.-=..+..++...+.+..|...+..+.. ++++.. ...+++|..|..
T Consensus 230 ~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~ 309 (629)
T KOG0963|consen 230 VAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLV 309 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34433444555555555555556667777777776655543221 111111 123334444333
Q ss_pred -HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027451 157 -KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (223)
Q Consensus 157 -e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~ 204 (223)
+.+..+.+|...++++++....++.|+++.++. ..||.+..|..-|+
T Consensus 310 ~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 310 EEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHH
Confidence 334455566666666666666778888888877 77888877776665
No 70
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=85.62 E-value=7.7 Score=29.89 Aligned_cols=50 Identities=34% Similarity=0.415 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhcc
Q 027451 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDW 212 (223)
Q Consensus 156 ~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~ 212 (223)
..+..++.++...-. ++.+||+|...+..|=.+|.-|+++|+..+...+.
T Consensus 8 ~~l~~le~~l~~l~~-------~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLE-------ELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666666665554 57999999999999999999999999999876544
No 71
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=85.54 E-value=11 Score=30.72 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=22.1
Q ss_pred HHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027451 94 TLMGASLFLA-FMIDRLHHYIRELRIRRKTMEAIKNQ 129 (223)
Q Consensus 94 YIsGF~LFL~-lvI~R~~~li~~l~~~~~~~~al~kQ 129 (223)
||..+.+.+. +.+-.+..+..++.+++..++.+++-
T Consensus 2 ~i~i~l~~l~iilli~~~~~~~kl~kl~r~Y~~lm~g 38 (151)
T PF14584_consen 2 YIIIGLLVLVIILLILIIILNIKLRKLKRRYDALMRG 38 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3443333333 33445566667888888888888753
No 72
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=85.51 E-value=24 Score=30.79 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~ 206 (223)
++......+...+..++.++.+.+..+..+..+..||.+|.++-++++.+
T Consensus 54 eLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 54 ELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444666666667777777788888999999999999999999998877
No 73
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=85.35 E-value=21 Score=30.97 Aligned_cols=46 Identities=17% Similarity=0.120 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHH
Q 027451 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQ 201 (223)
Q Consensus 156 ~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~ 201 (223)
++-.+|..+++..++++...+...+.+.++.+.++.+-++|..+.+
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~ 94 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIE 94 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433333445555555555555555544443
No 74
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=85.30 E-value=22 Score=30.16 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHH
Q 027451 159 KDLESELETKSKEANAAETNAVALRKQSEGFLFEYD 194 (223)
Q Consensus 159 ~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYD 194 (223)
++|..+|...+.++..++..+..|.+|++-.++.|.
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~ 156 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFR 156 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 344445555555555555555556555555555443
No 75
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=84.84 E-value=25 Score=30.50 Aligned_cols=56 Identities=16% Similarity=0.231 Sum_probs=26.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027451 149 DQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (223)
Q Consensus 149 ~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~ 204 (223)
++++..++++++++..++.+...+.+...-.+...++.+....+..+.......++
T Consensus 84 ~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 139 (302)
T PF10186_consen 84 KRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQ 139 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555543333334444555555555554444443333
No 76
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.63 E-value=19 Score=31.45 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhhh
Q 027451 189 FLFEYDRLLEENQNLRNQLQSL 210 (223)
Q Consensus 189 l~~EYDrL~~e~~~l~~~l~~~ 210 (223)
....-.|+.+||..|++++...
T Consensus 79 ~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 79 RQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456777777777777644
No 77
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=84.62 E-value=4.3 Score=29.88 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=14.1
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHh
Q 027451 184 KQSEGFLFEYDRLLEENQNLRNQ 206 (223)
Q Consensus 184 kQae~l~~EYDrL~~e~~~l~~~ 206 (223)
..++...+.+=+++-+||++++-
T Consensus 32 ~~~~~~v~~hI~lLheYNeiKD~ 54 (83)
T PF07061_consen 32 EDPEKIVKRHIKLLHEYNEIKDI 54 (83)
T ss_pred cCHHHHHHHHHHHHHHHhHHHHH
Confidence 45555556666666777766653
No 78
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=84.49 E-value=15 Score=30.03 Aligned_cols=64 Identities=23% Similarity=0.331 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh------hcccccCCCC
Q 027451 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS------LDWRLSHSGS 219 (223)
Q Consensus 156 ~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~------~~~~~~~~~~ 219 (223)
.++++....+............+-.++..+++++-.|..+|.+-.+.+...|.. .-+++++++.
T Consensus 21 ~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~p~~ 90 (157)
T PF04136_consen 21 DQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLNSPGS 90 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCCCC
Confidence 344444444555555555556677899999999999999998888777766654 4466666543
No 79
>PRK03918 chromosome segregation protein; Provisional
Probab=84.47 E-value=11 Score=38.16 Aligned_cols=11 Identities=18% Similarity=0.015 Sum_probs=4.0
Q ss_pred HhhHHHHHHHH
Q 027451 186 SEGFLFEYDRL 196 (223)
Q Consensus 186 ae~l~~EYDrL 196 (223)
.+.+...|..+
T Consensus 247 ~~~l~~~~~~l 257 (880)
T PRK03918 247 LESLEGSKRKL 257 (880)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 80
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=84.26 E-value=9.9 Score=33.33 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=21.2
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 027451 143 EIKALEDQMTTLKLKLKDLESELETKSKEANA 174 (223)
Q Consensus 143 ~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~ 174 (223)
+..++.++++.+..+++.++.+|+..+.+...
T Consensus 150 EkeeL~~eleele~e~ee~~erlk~le~E~s~ 181 (290)
T COG4026 150 EKEELLKELEELEAEYEEVQERLKRLEVENSR 181 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667777777777777777766665433
No 81
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.12 E-value=21 Score=31.84 Aligned_cols=38 Identities=16% Similarity=0.389 Sum_probs=15.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHh
Q 027451 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSE 187 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae 187 (223)
+++.+..+++++..++.+.+++....+.+++.++++++
T Consensus 53 ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~ 90 (265)
T COG3883 53 EIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIA 90 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443333333333333333
No 82
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=84.05 E-value=5.9 Score=29.41 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=20.0
Q ss_pred hhHHHHHHHhHhhHHHHHHHHHHHHHH
Q 027451 176 ETNAVALRKQSEGFLFEYDRLLEENQN 202 (223)
Q Consensus 176 ~~d~~aLKkQae~l~~EYDrL~~e~~~ 202 (223)
+.+..++++++++.+++--.|-.||.+
T Consensus 42 E~E~~~l~~~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 42 EKELNELKEKLENNEKELKLLRKENRK 68 (85)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhhh
Confidence 556778888888888877777666654
No 83
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=83.81 E-value=14 Score=30.51 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHH
Q 027451 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEE 199 (223)
Q Consensus 158 ~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e 199 (223)
.++|+.+++....+.+..+++++.|+++..-.+.+|.-|..=
T Consensus 106 ~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~I 147 (161)
T TIGR02894 106 NERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDI 147 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333334556666666666666555433
No 84
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.78 E-value=9.7 Score=39.82 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=19.7
Q ss_pred HHHhHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q 027451 94 TLMGASLFLA--------FMIDRLHHYIRELRIRRKTME 124 (223)
Q Consensus 94 YIsGF~LFL~--------lvI~R~~~li~~l~~~~~~~~ 124 (223)
-.-+.+|+.- -++.++-.+..++-..+.+..
T Consensus 720 ~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ik 758 (1174)
T KOG0933|consen 720 KLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIK 758 (1174)
T ss_pred HHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4456666643 456777778777766666543
No 85
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=83.63 E-value=14 Score=26.47 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=19.7
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhccccc
Q 027451 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLS 215 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~~~ 215 (223)
-+.-|+.+...+...-+.+....+.+...+.....|++
T Consensus 34 ~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 34 TIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555555555555555555555544444443
No 86
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=83.58 E-value=15 Score=38.59 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=11.1
Q ss_pred hhHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 027451 176 ETNAVALRKQSEGFLFEYDRLLEENQNL 203 (223)
Q Consensus 176 ~~d~~aLKkQae~l~~EYDrL~~e~~~l 203 (223)
+.+++-|++|.+.++..-.+|-+|.+..
T Consensus 400 e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 400 ENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333443333333
No 87
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=83.57 E-value=18 Score=38.03 Aligned_cols=101 Identities=18% Similarity=0.228 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHhcccc--cccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHH-------HhhhHHHH
Q 027451 111 HYIRELRIRRKTMEAIKNQSRG--FEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEAN-------AAETNAVA 181 (223)
Q Consensus 111 ~li~~l~~~~~~~~al~kQa~~--~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~-------~~~~d~~a 181 (223)
-+..++.+++.++.|++...=- +++.......+.+...+.++.+..+++.++.+++..+...- ....+.+.
T Consensus 408 d~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~ 487 (1041)
T KOG0243|consen 408 DLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEK 487 (1041)
T ss_pred HHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4556778888888877642100 00001111122333444444455555555555554444322 23446778
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHHhHhhhc
Q 027451 182 LRKQSEGFLFEYDRLLEENQNLRNQLQSLD 211 (223)
Q Consensus 182 LKkQae~l~~EYDrL~~e~~~l~~~l~~~~ 211 (223)
+|++..+...|..++.+|+.+++.++...+
T Consensus 488 ~k~~L~~~~~el~~~~ee~~~~~~~l~~~e 517 (1041)
T KOG0243|consen 488 LKSKLQNKNKELESLKEELQQAKATLKEEE 517 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888777765443
No 88
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=83.55 E-value=4.4 Score=40.02 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHH
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQ 201 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~ 201 (223)
++.|++++...+++.++.+..++.|+.+||--.|+.+..|..+.+.++
T Consensus 105 l~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~ 152 (907)
T KOG2264|consen 105 LNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNN 152 (907)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 344555555555555555556666789999999999888888876654
No 89
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=83.44 E-value=16 Score=28.66 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=21.4
Q ss_pred hhhHHHHHHHhHhhHHHHHHHHHH-------HHHHHHHhH
Q 027451 175 AETNAVALRKQSEGFLFEYDRLLE-------ENQNLRNQL 207 (223)
Q Consensus 175 ~~~d~~aLKkQae~l~~EYDrL~~-------e~~~l~~~l 207 (223)
....+..|+.+.+.++..|+.+++ +.++|+..+
T Consensus 66 ~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv 105 (120)
T PF12325_consen 66 LKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADV 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 334577788888888888876654 334555554
No 90
>PRK09039 hypothetical protein; Validated
Probab=83.07 E-value=23 Score=32.59 Aligned_cols=47 Identities=13% Similarity=0.043 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHH
Q 027451 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQN 202 (223)
Q Consensus 156 ~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~ 202 (223)
.++..|+.+|+..+..+...+..+++.+.|-...+..++.|..+.+.
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555544444
No 91
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=82.86 E-value=31 Score=36.05 Aligned_cols=94 Identities=26% Similarity=0.264 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhccccccccc-ccchHHHHHhHHHhHHHHHHHHHH-------HHHHHHHHHHHHHhhhHHHHHHHhH
Q 027451 115 ELRIRRKTMEAIKNQSRGFEDGK-AASSEEIKALEDQMTTLKLKLKDL-------ESELETKSKEANAAETNAVALRKQS 186 (223)
Q Consensus 115 ~l~~~~~~~~al~kQa~~~~~~~-~~~~~~~~~~~~~~~~l~~e~~~L-------k~el~~~~~el~~~~~d~~aLKkQa 186 (223)
++..++.+++-++.+.++...+. .+.+-+.+.+...|.++++-+-+| +.......+++++-..+++-|+.|.
T Consensus 340 r~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~k 419 (1243)
T KOG0971|consen 340 RVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQK 419 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33444444555555443332211 233444556666666655432222 2333344445555555778888888
Q ss_pred hhHHHHHHHHHHHHHHHHHhHh
Q 027451 187 EGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 187 e~l~~EYDrL~~e~~~l~~~l~ 208 (223)
|+|.++-|..-.....++.|++
T Consensus 420 E~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 420 ERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887777777777775
No 92
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=82.76 E-value=29 Score=31.54 Aligned_cols=84 Identities=20% Similarity=0.162 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHH
Q 027451 113 IRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFE 192 (223)
Q Consensus 113 i~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~E 192 (223)
=-+|..+++++..++=..... ..+...+.=+++.|+.++++++..+-.+.++...-..+++.+|.....+..|
T Consensus 83 k~~l~evEekyrkAMv~naQL-------DNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e 155 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQL-------DNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREE 155 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhh-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677666444221111 1233344445555666666666666666665554445677777777777777
Q ss_pred HHHHHHHHHHH
Q 027451 193 YDRLLEENQNL 203 (223)
Q Consensus 193 YDrL~~e~~~l 203 (223)
.|.|.++....
T Consensus 156 ~~~Lre~L~~r 166 (302)
T PF09738_consen 156 LDELREQLKQR 166 (302)
T ss_pred HHHHHHHHHHH
Confidence 77766665443
No 93
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=82.48 E-value=19 Score=35.69 Aligned_cols=44 Identities=20% Similarity=0.158 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHH
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEEN 200 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~ 200 (223)
+++++..+++..++++.+.+.++..++.+.+.+.++-.++..+.
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444445555555544444444444333
No 94
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=82.48 E-value=20 Score=28.47 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=11.0
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHH
Q 027451 178 NAVALRKQSEGFLFEYDRLLEEN 200 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~ 200 (223)
++..|+.+......+|+.+...+
T Consensus 70 ~~~~L~~~~~~k~~~~~~l~~~~ 92 (150)
T PF07200_consen 70 ELKELESEYQEKEQQQDELSSNY 92 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHccC
Confidence 34445555555555555444444
No 95
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=82.41 E-value=11 Score=30.62 Aligned_cols=50 Identities=16% Similarity=0.134 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHH-HHHHHH
Q 027451 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEE-NQNLRN 205 (223)
Q Consensus 156 ~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e-~~~l~~ 205 (223)
..++.|+.|++..+..+++....+..|++.+..+..++.+..++ |.-++.
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~ 91 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQL 91 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcc
Confidence 34566677777766677777778999999999999999998877 555543
No 96
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=82.05 E-value=8 Score=28.28 Aligned_cols=57 Identities=21% Similarity=0.323 Sum_probs=37.9
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 145 KALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 145 ~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
....|+|+-+.-|+++||.+=..... +.+.++.+-+.|..|.+.|.+|++.=++++.
T Consensus 14 qqAvdtI~LLqmEieELKekn~~L~~-------e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 14 QQAIDTITLLQMEIEELKEKNNSLSQ-------EVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666654444333 4677777777888888888888877666554
No 97
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=81.82 E-value=15 Score=37.33 Aligned_cols=20 Identities=0% Similarity=0.106 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 027451 112 YIRELRIRRKTMEAIKNQSR 131 (223)
Q Consensus 112 li~~l~~~~~~~~al~kQa~ 131 (223)
+..++..++.++..++.+..
T Consensus 32 ~~~~i~~l~~elk~~~~~~~ 51 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELS 51 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544433
No 98
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=81.58 E-value=26 Score=31.93 Aligned_cols=59 Identities=24% Similarity=0.342 Sum_probs=46.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
+....+.++..|..+|..+..+....+.++..|..|.-.+++..-.+..|+++++..|.
T Consensus 207 QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 207 QLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44445567788888888888888888888888888888888888888888887776664
No 99
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.13 E-value=11 Score=40.11 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 156 ~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
+++++++.++...+..++.+..++.-..+-..++.++++.+.+|...|..++.
T Consensus 914 ~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~ 966 (1293)
T KOG0996|consen 914 EQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELK 966 (1293)
T ss_pred HHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555556666777777777777777777776666655543
No 100
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=81.12 E-value=22 Score=27.99 Aligned_cols=10 Identities=40% Similarity=0.620 Sum_probs=6.8
Q ss_pred HHHHHHHHHH
Q 027451 192 EYDRLLEENQ 201 (223)
Q Consensus 192 EYDrL~~e~~ 201 (223)
|||.|.+..+
T Consensus 116 eyd~La~~I~ 125 (139)
T PF05615_consen 116 EYDALAKKIN 125 (139)
T ss_pred HHHHHHHHHh
Confidence 7887776544
No 101
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=81.08 E-value=11 Score=31.76 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027451 104 FMIDRLHHYIRELRIRRKTMEAIK 127 (223)
Q Consensus 104 lvI~R~~~li~~l~~~~~~~~al~ 127 (223)
|=-......-..+..++++.+.+.
T Consensus 59 Fps~~~~~~~~~~~~l~~~~~~~~ 82 (188)
T PF03962_consen 59 FPSQAKQKRQNKLEKLQKEIEELE 82 (188)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444333
No 102
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=80.91 E-value=10 Score=27.52 Aligned_cols=48 Identities=25% Similarity=0.223 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
+.+++++|+..|..++.| ++-|+..++++...--...+-+.+|+.+..
T Consensus 3 Li~qNk~L~~kL~~K~eE-------I~rLn~lv~sLR~KLiKYt~LnkkLq~~~~ 50 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEE-------IDRLNILVGSLRGKLIKYTELNKKLQDQLL 50 (76)
T ss_dssp ---HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666664 455555555554443333333344444433
No 103
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=80.75 E-value=6.9 Score=39.97 Aligned_cols=51 Identities=24% Similarity=0.228 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 158 ~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
+..|..+.+....++......++.+.-+.+.++.++|...++..+|+..|+
T Consensus 116 ~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~ 166 (775)
T PF10174_consen 116 FERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQ 166 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444445666666677777777777777777777665
No 104
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=80.60 E-value=39 Score=29.56 Aligned_cols=58 Identities=16% Similarity=0.231 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 151 MTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 151 ~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
+..+..+++.|+.+.............+.+.+.++++.|......+...-+.+-.++.
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~ 111 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVE 111 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444455555555555555555444444444443
No 105
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=80.39 E-value=27 Score=27.69 Aligned_cols=22 Identities=9% Similarity=0.045 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027451 107 DRLHHYIRELRIRRKTMEAIKN 128 (223)
Q Consensus 107 ~R~~~li~~l~~~~~~~~al~k 128 (223)
.+.-.+.+++..++++++.+.+
T Consensus 20 ~~~~~v~~~l~~LEae~q~L~~ 41 (126)
T PF09403_consen 20 TATASVESELNQLEAEYQQLEQ 41 (126)
T ss_dssp ---HHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHH
Confidence 3445788888889998888764
No 106
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=80.39 E-value=10 Score=29.43 Aligned_cols=47 Identities=40% Similarity=0.434 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhh
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSL 210 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~ 210 (223)
.+..+++++...-. ++..||.++..+-.|=-+|.-|+++|+..+...
T Consensus 9 ~l~~le~~l~~l~~-------el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 9 ALDDLEQNLGVLLK-------ELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666555 578999999999999999999999999988854
No 107
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=80.16 E-value=11 Score=30.79 Aligned_cols=57 Identities=28% Similarity=0.275 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 027451 110 HHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAA 175 (223)
Q Consensus 110 ~~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~ 175 (223)
.....+...++.+..+++++..+-+.. ++.++-. +++.+++++++|+++..++..+.
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~q----DeFAkwa-----Kl~Rk~~kl~~el~~~~~~~~~~ 92 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQ----DEFAKWA-----KLNRKLDKLEEELEKLNKSLSSE 92 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TT----TSHHHHH-----HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcH----HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777777777765544321 1123221 24556666666666555544443
No 108
>PRK11281 hypothetical protein; Provisional
Probab=80.04 E-value=19 Score=38.35 Aligned_cols=103 Identities=16% Similarity=0.195 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHH-------------HHHHHHHHHHHHHHHH
Q 027451 106 IDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKL-------------KLKDLESELETKSKEA 172 (223)
Q Consensus 106 I~R~~~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~-------------e~~~Lk~el~~~~~el 172 (223)
+......+.+..+.+++.++++++.+.+.+. ..+...+++.+++ -..+|++.+.+.+.++
T Consensus 65 l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~-------l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~L 137 (1113)
T PRK11281 65 LEQTLALLDKIDRQKEETEQLKQQLAQAPAK-------LRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQL 137 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHH
Confidence 4455566666666667666666665554431 1111111111110 1234555555555566
Q ss_pred HHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhccccc
Q 027451 173 NAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLS 215 (223)
Q Consensus 173 ~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~~~ 215 (223)
..+++++.+.-+|.-+++...+|-...-...+.+++..+.+..
T Consensus 138 q~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~ 180 (1113)
T PRK11281 138 QNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLK 180 (1113)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666666666655555455555555544443
No 109
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=79.86 E-value=39 Score=29.17 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 158 ~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
.+.++..|..++..++.++.-.+.....+..|++.-|+|-++....+...
T Consensus 171 e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~ 220 (237)
T PF00261_consen 171 EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKY 220 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666666667777777777666665544433
No 110
>PRK02224 chromosome segregation protein; Provisional
Probab=79.36 E-value=20 Score=36.55 Aligned_cols=12 Identities=33% Similarity=0.218 Sum_probs=4.6
Q ss_pred hHHHHHHHHHHH
Q 027451 188 GFLFEYDRLLEE 199 (223)
Q Consensus 188 ~l~~EYDrL~~e 199 (223)
.++.+++.+.++
T Consensus 416 ~l~~~~~~l~~~ 427 (880)
T PRK02224 416 ELREERDELRER 427 (880)
T ss_pred HHHHHHHHHHHH
Confidence 333334443333
No 111
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=79.26 E-value=22 Score=25.99 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhHhhhccc
Q 027451 196 LLEENQNLRNQLQSLDWR 213 (223)
Q Consensus 196 L~~e~~~l~~~l~~~~~~ 213 (223)
|..|+++++.+.....-|
T Consensus 51 L~~en~qLk~E~~~Wqer 68 (79)
T PRK15422 51 LERENNHLKEQQNGWQER 68 (79)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666666555544333
No 112
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=78.65 E-value=8.7 Score=36.99 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=9.9
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 184 KQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 184 kQae~l~~EYDrL~~e~~~l~~~l 207 (223)
+|.+.++..-+.+.+|++.|+.++
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444
No 113
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=78.64 E-value=62 Score=31.15 Aligned_cols=18 Identities=11% Similarity=0.250 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHhcccc
Q 027451 115 ELRIRRKTMEAIKNQSRG 132 (223)
Q Consensus 115 ~l~~~~~~~~al~kQa~~ 132 (223)
++-..+..++.+...+.+
T Consensus 348 qlen~k~~~e~~~~e~~~ 365 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADS 365 (493)
T ss_pred HHHhHHHHHHHHHHHHHh
Confidence 444455555555544443
No 114
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=78.61 E-value=50 Score=29.65 Aligned_cols=53 Identities=34% Similarity=0.526 Sum_probs=36.4
Q ss_pred HhHHHhHHHHH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHhH--hhHHHHHHHHHH
Q 027451 146 ALEDQMTTLKL------KLKDLESELETKSKEANAAETNAVALRKQS--EGFLFEYDRLLE 198 (223)
Q Consensus 146 ~~~~~~~~l~~------e~~~Lk~el~~~~~el~~~~~d~~aLKkQa--e~l~~EYDrL~~ 198 (223)
...++|++++. ++..|++||...+.+...+|+.+..+|-|. |++...++-+.+
T Consensus 149 ~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E 209 (271)
T PF13805_consen 149 KLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQKLKEAYSLKFDALIE 209 (271)
T ss_dssp HHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44455555442 467788888888888888888888887774 566666776654
No 115
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=78.54 E-value=27 Score=26.58 Aligned_cols=26 Identities=8% Similarity=-0.084 Sum_probs=13.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 027451 94 TLMGASLFLAFMIDRLHHYIRELRIR 119 (223)
Q Consensus 94 YIsGF~LFL~lvI~R~~~li~~l~~~ 119 (223)
-++.+..++++.++|.+.-=.+...+
T Consensus 15 ~~~~~~~~~~~~l~~~~a~~~~~~~l 40 (106)
T PF10805_consen 15 VFGIAGGIFWLWLRRTYAKREDIEKL 40 (106)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 34445566666666655443333333
No 116
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=78.54 E-value=13 Score=36.50 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l 189 (223)
..+++++|+.+++.....++.+.++++..++|.++.
T Consensus 217 ~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~ 252 (555)
T TIGR03545 217 IKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKAD 252 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 334566666666665555555555555544444444
No 117
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=78.20 E-value=28 Score=26.66 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHH
Q 027451 155 KLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQ 201 (223)
Q Consensus 155 ~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~ 201 (223)
.....+|+.+|+.++..|.+.+.+++.|.=.-..|.+.-..|.+|.+
T Consensus 25 Q~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 25 QAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888889999988888888887776555555555555554444
No 118
>PRK02224 chromosome segregation protein; Provisional
Probab=77.90 E-value=33 Score=35.04 Aligned_cols=11 Identities=9% Similarity=0.181 Sum_probs=4.6
Q ss_pred HHHHHHhHhhH
Q 027451 179 AVALRKQSEGF 189 (223)
Q Consensus 179 ~~aLKkQae~l 189 (223)
++.++.+.+.+
T Consensus 629 l~~~r~~i~~l 639 (880)
T PRK02224 629 LAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 119
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=77.80 E-value=28 Score=29.75 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=26.0
Q ss_pred HHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027451 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (223)
Q Consensus 171 el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~ 204 (223)
.++....|+++++.|.++|+.....=..|.+.|+
T Consensus 161 ~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 161 NLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667788999999999999887765555555553
No 120
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=77.73 E-value=49 Score=33.29 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=18.8
Q ss_pred hhHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027451 176 ETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (223)
Q Consensus 176 ~~d~~aLKkQae~l~~EYDrL~~e~~~l~ 204 (223)
+.++..|+-+++..+.-|+.++..+++.+
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666777766666654
No 121
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=77.28 E-value=38 Score=29.03 Aligned_cols=49 Identities=27% Similarity=0.239 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHH
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQN 202 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~ 202 (223)
..++.+.++.+++.....|+-|+...+-.-....-|+++-|+|-+....
T Consensus 135 ~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~ 183 (205)
T KOG1003|consen 135 LEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEE 183 (205)
T ss_pred HhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHH
Confidence 3344556666666666666655555555555555555555555444443
No 122
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=77.23 E-value=15 Score=33.95 Aligned_cols=58 Identities=17% Similarity=0.227 Sum_probs=40.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH--HHHhHhhHHHHHHHHHHHHHHHHH
Q 027451 148 EDQMTTLKLKLKDLESELETKSKEANAAETNAVA--LRKQSEGFLFEYDRLLEENQNLRN 205 (223)
Q Consensus 148 ~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~a--LKkQae~l~~EYDrL~~e~~~l~~ 205 (223)
.+|+..|++|+..||+|.++++.++++-|+|... +-+..+-.+.-||++.+=-++.|+
T Consensus 31 ~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk~Re 90 (420)
T PF07407_consen 31 IDENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNKMRE 90 (420)
T ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 3466778888999999999888888888777664 223333346678887766666544
No 123
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.06 E-value=29 Score=36.48 Aligned_cols=70 Identities=24% Similarity=0.302 Sum_probs=40.7
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhcccc
Q 027451 145 KALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRL 214 (223)
Q Consensus 145 ~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~~ 214 (223)
..+.+++..-+..+.+++.+++....+++..+.++...+-+.....++|+...+++..+++.++...+++
T Consensus 395 ~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l 464 (1174)
T KOG0933|consen 395 KTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRL 464 (1174)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445556666666666666666666666666666666677666666655555555554444
No 124
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=77.03 E-value=28 Score=26.01 Aligned_cols=51 Identities=24% Similarity=0.291 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh---HHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 027451 156 LKLKDLESELETKSKEANAAET---NAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (223)
Q Consensus 156 ~e~~~Lk~el~~~~~el~~~~~---d~~aLKkQae~l~~EYDrL~~e~~~l~~~ 206 (223)
.+++.|+.+-+...+++..... +.+.++.++..+..+...+-++...+..+
T Consensus 43 ~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~ 96 (108)
T PF02403_consen 43 QELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEE 96 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333222 34445555555444444444444444333
No 125
>PRK14139 heat shock protein GrpE; Provisional
Probab=76.90 E-value=11 Score=31.91 Aligned_cols=41 Identities=15% Similarity=0.197 Sum_probs=30.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q 027451 149 DQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (223)
Q Consensus 149 ~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l 189 (223)
+++..+.+++++|+.++++.+..+.++.+|.+..||..+.-
T Consensus 32 ~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE 72 (185)
T PRK14139 32 DAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQED 72 (185)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667788888888888888888888888888866543
No 126
>PRK12704 phosphodiesterase; Provisional
Probab=76.78 E-value=76 Score=30.96 Aligned_cols=40 Identities=20% Similarity=0.096 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027451 166 ETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (223)
Q Consensus 166 ~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~ 205 (223)
+.++..+.+.+.+++..++..+...++++...++++++..
T Consensus 99 e~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~ 138 (520)
T PRK12704 99 DRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIE 138 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555666666666666777777666666543
No 127
>PRK14158 heat shock protein GrpE; Provisional
Probab=76.38 E-value=10 Score=32.30 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=30.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q 027451 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l 189 (223)
++..+.+++++++.++++.+..+.++.+|.+..++..+.-
T Consensus 41 ~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE 80 (194)
T PRK14158 41 RIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKE 80 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788888888888888888888888888876544
No 128
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=76.29 E-value=72 Score=31.08 Aligned_cols=33 Identities=18% Similarity=0.059 Sum_probs=16.5
Q ss_pred HHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHH
Q 027451 170 KEANAAETNAVALRKQSEGFLFEYDRLLEENQN 202 (223)
Q Consensus 170 ~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~ 202 (223)
+++.+.+.+++..+++.+...++.+++.++...
T Consensus 97 e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~ 129 (514)
T TIGR03319 97 ESLDKKEENLEKKEKELSNKEKNLDEKEEELEE 129 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555444
No 129
>PRK14162 heat shock protein GrpE; Provisional
Probab=76.23 E-value=12 Score=31.89 Aligned_cols=40 Identities=8% Similarity=0.117 Sum_probs=29.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q 027451 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l 189 (223)
+++.+..+++.|+.++++.+..+.++.+|.+..++..+.-
T Consensus 40 e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE 79 (194)
T PRK14162 40 PVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKE 79 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666777788888877778888888888888766544
No 130
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=76.18 E-value=25 Score=37.66 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=18.3
Q ss_pred HHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027451 172 ANAAETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (223)
Q Consensus 172 l~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~ 204 (223)
+..+..|++.|.+-.+++++-|-+|.+..++++
T Consensus 1262 ~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1262 LPLAGKDLESLQREFNGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455666666666666666666554444443
No 131
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=76.15 E-value=75 Score=31.14 Aligned_cols=61 Identities=20% Similarity=0.194 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhcccccCCC
Q 027451 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHSG 218 (223)
Q Consensus 156 ~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~~~~~~ 218 (223)
..+..+...+...+.++..-...++.|..+-+....+|+.+.+.|..+++++- +.||+..+
T Consensus 105 ~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll--~~~~~~G~ 165 (569)
T PRK04778 105 HEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLL--ANRFSFGP 165 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCccccc
Confidence 34556666777777777777778889999999999999999999999999884 45555544
No 132
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=76.14 E-value=36 Score=33.53 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHH
Q 027451 159 KDLESELETKSKEANAAETNAVALRKQSEGFLFEYDR 195 (223)
Q Consensus 159 ~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDr 195 (223)
+++..|.++.++++.+.+.+++.|.|-+-.+..+|.+
T Consensus 335 e~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~ 371 (581)
T KOG0995|consen 335 ERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIED 371 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444444444444444444455554444444444433
No 133
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=76.07 E-value=27 Score=30.34 Aligned_cols=33 Identities=30% Similarity=0.372 Sum_probs=22.8
Q ss_pred HHH--HHHHh-HHHHHH------HHHHHHHHHHHHHHHHHHH
Q 027451 90 LLE--ATLMG-ASLFLA------FMIDRLHHYIRELRIRRKT 122 (223)
Q Consensus 90 ~~q--~YIsG-F~LFL~------lvI~R~~~li~~l~~~~~~ 122 (223)
|++ +||.| |+||+. |+=.|.-.....|.++.+.
T Consensus 70 ~~~It~~llgs~slymfrwal~~lye~r~~r~~~~L~kLra~ 111 (251)
T COG5415 70 YLVITALLLGSGSLYMFRWALTKLYEFRNNRRLRKLAKLRAI 111 (251)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 555 69999 888763 5666666677777776653
No 134
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=75.78 E-value=35 Score=37.13 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHH
Q 027451 153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRL 196 (223)
Q Consensus 153 ~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL 196 (223)
.+..++..++.+++....++..++.+++.+++|.+.++.+++.|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l 323 (1353)
T TIGR02680 280 QLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEAL 323 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666666666666666666666666666666666554
No 135
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=75.76 E-value=18 Score=27.62 Aligned_cols=8 Identities=13% Similarity=0.214 Sum_probs=2.9
Q ss_pred HHHhHhhH
Q 027451 182 LRKQSEGF 189 (223)
Q Consensus 182 LKkQae~l 189 (223)
|+.+.+.+
T Consensus 53 L~~eI~~L 60 (105)
T PRK00888 53 LFAEIDDL 60 (105)
T ss_pred HHHHHHHh
Confidence 33333333
No 136
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=75.48 E-value=38 Score=26.69 Aligned_cols=29 Identities=24% Similarity=0.163 Sum_probs=22.6
Q ss_pred hHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027451 177 TNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (223)
Q Consensus 177 ~d~~aLKkQae~l~~EYDrL~~e~~~l~~ 205 (223)
..+++|.+|-+-++..|+.|..+.++.-.
T Consensus 84 ~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 84 LRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36889999999999999888776655443
No 137
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=75.37 E-value=38 Score=26.62 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=7.9
Q ss_pred HHHHhHhhHHHHHHHHHHHH
Q 027451 181 ALRKQSEGFLFEYDRLLEEN 200 (223)
Q Consensus 181 aLKkQae~l~~EYDrL~~e~ 200 (223)
+..++...+..++..|...|
T Consensus 65 ~~~~~~~~L~~el~~l~~ry 84 (120)
T PF12325_consen 65 ALKKEVEELEQELEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444443333
No 138
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=75.19 E-value=20 Score=29.36 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=24.5
Q ss_pred HHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHH
Q 027451 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQN 202 (223)
Q Consensus 171 el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~ 202 (223)
+.++-+.+.+.|.+|++..+.++|+....|..
T Consensus 81 ~~~~~~~e~~~l~~~A~~~e~~~d~~~~~~~~ 112 (157)
T PF14235_consen 81 EKARYKSEAEELEAKAKEAEAESDHALHHHHR 112 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhcccch
Confidence 33334446799999999999999999877654
No 139
>PHA02047 phage lambda Rz1-like protein
Probab=74.78 E-value=12 Score=28.41 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHH
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQ 201 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~ 201 (223)
+.+.|..+|+..+..+..-+..+++|..+++...+|-++-+++|+
T Consensus 35 ~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~ 79 (101)
T PHA02047 35 EAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQNR 79 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344555555555555555555677777777777777777666553
No 140
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=74.73 E-value=37 Score=26.99 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 027451 106 IDRLHHYIRELRIRRKTMEAIKNQSRGFED 135 (223)
Q Consensus 106 I~R~~~li~~l~~~~~~~~al~kQa~~~~~ 135 (223)
|+++..+..+...+.++.+..++|.++...
T Consensus 22 iN~Fsrl~~R~~~lk~dik~~k~~~enled 51 (131)
T KOG1760|consen 22 INEFSRLNSRKDDLKADIKEAKTEIENLED 51 (131)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 566666667777777777777777766554
No 141
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=74.73 E-value=38 Score=35.83 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHH
Q 027451 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEY 193 (223)
Q Consensus 156 ~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EY 193 (223)
.++.+++.++........+...+++.+.||+.++.++.
T Consensus 351 re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 351 REVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666667777777777777776
No 142
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=74.36 E-value=26 Score=29.01 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=9.4
Q ss_pred HHHHHHhHhhHHHHHHHHHH
Q 027451 179 AVALRKQSEGFLFEYDRLLE 198 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~ 198 (223)
+..|++|.+.|++|+..|..
T Consensus 113 ~~~l~~~~e~Le~e~~~L~~ 132 (161)
T TIGR02894 113 NESLQKRNEELEKELEKLRQ 132 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 143
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=74.23 E-value=17 Score=28.26 Aligned_cols=46 Identities=24% Similarity=0.310 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
.+..|+.+|...-. ++.+||+|+..+-.|=..|.=|+++|++.|.-
T Consensus 9 ~v~~le~~l~~l~~-------el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 9 QVDNLEEQLGVLLA-------ELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 45566666665554 57899999999988888898899999988854
No 144
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=74.10 E-value=66 Score=28.80 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 158 ~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
+..+..+-...+.++++-..+++--+|..+.|++-==--++||+++..+|+
T Consensus 185 l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~ 235 (267)
T PF10234_consen 185 LNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQ 235 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 333333333334444444445555555555554433333566666666654
No 145
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=73.94 E-value=28 Score=31.93 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=17.7
Q ss_pred hHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027451 177 TNAVALRKQSEGFLFEYDRLLEENQNLR 204 (223)
Q Consensus 177 ~d~~aLKkQae~l~~EYDrL~~e~~~l~ 204 (223)
.+++.+++|.++++.+|-.+.||.+++.
T Consensus 133 ~qLEk~~~q~~qLe~d~qs~lDEkeEl~ 160 (319)
T PF09789_consen 133 EQLEKLREQIEQLERDLQSLLDEKEELV 160 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666665543
No 146
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=73.78 E-value=70 Score=30.52 Aligned_cols=21 Identities=29% Similarity=0.221 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 027451 108 RLHHYIRELRIRRKTMEAIKN 128 (223)
Q Consensus 108 R~~~li~~l~~~~~~~~al~k 128 (223)
+.-.+..+++.+++..+++++
T Consensus 28 ~~s~~~aq~~~~~a~~~ai~a 48 (459)
T KOG0288|consen 28 AQSRLSAQLVILRAESRAIKA 48 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666665544
No 147
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=73.60 E-value=34 Score=36.53 Aligned_cols=55 Identities=24% Similarity=0.347 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
....+.+++.+|...+.+++.+++++..+++-..++..--.++.++.+++++.++
T Consensus 540 ~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~ 594 (1293)
T KOG0996|consen 540 KKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLS 594 (1293)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666666667777777777776665566666655555443
No 148
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=73.50 E-value=39 Score=26.50 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=20.4
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
.+.++|+|...+..+...|..+-+..+..+.
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~ 90 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELE 90 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777766666666665554
No 149
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=73.40 E-value=10 Score=34.71 Aligned_cols=38 Identities=18% Similarity=0.371 Sum_probs=17.9
Q ss_pred hHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhcccc
Q 027451 177 TNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRL 214 (223)
Q Consensus 177 ~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~~ 214 (223)
..+..+..+...++.+|+....+.+.++.+.+...+|.
T Consensus 242 ~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl 279 (344)
T PF12777_consen 242 AELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKL 279 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444455555555545444544444444433
No 150
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.97 E-value=32 Score=24.70 Aligned_cols=53 Identities=25% Similarity=0.401 Sum_probs=30.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 149 DQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 149 ~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
++|.-+.-|+++||.+-.....+ ......+-++|..|-..|..||..-|..+.
T Consensus 18 dTI~LLQmEieELKEknn~l~~e-------~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQE-------VQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555666665544444443 444556666667777777777776555554
No 151
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=72.75 E-value=22 Score=35.38 Aligned_cols=42 Identities=19% Similarity=0.297 Sum_probs=27.1
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHh
Q 027451 146 ALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSE 187 (223)
Q Consensus 146 ~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae 187 (223)
++..+|++.+.++++||+++..++.||..-+.+++.-+-|.+
T Consensus 104 el~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~ 145 (907)
T KOG2264|consen 104 ELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLE 145 (907)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHH
Confidence 344456667777888888888887777775555544444333
No 152
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.39 E-value=59 Score=33.61 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhccccc
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLS 215 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~~~ 215 (223)
+..-+.++|..+.+.+-+++.-+.+..+|+-+-++++.+|-....+|+++.+++.-...++-
T Consensus 655 l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 655 LDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44445667777777776666666788888889999999998888888877777765544443
No 153
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=72.25 E-value=46 Score=37.56 Aligned_cols=8 Identities=25% Similarity=0.169 Sum_probs=3.9
Q ss_pred HHhcchhH
Q 027451 18 VLLFKTPL 25 (223)
Q Consensus 18 lLvlPlP~ 25 (223)
+.+-+|||
T Consensus 813 ~~lr~w~W 820 (1930)
T KOG0161|consen 813 LKLRTWPW 820 (1930)
T ss_pred HhhccCHH
Confidence 44444555
No 154
>PRK04863 mukB cell division protein MukB; Provisional
Probab=71.97 E-value=67 Score=35.45 Aligned_cols=32 Identities=22% Similarity=0.187 Sum_probs=13.4
Q ss_pred HHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHH
Q 027451 169 SKEANAAETNAVALRKQSEGFLFEYDRLLEEN 200 (223)
Q Consensus 169 ~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~ 200 (223)
+.++..++.+++.+++|...++.+.+.+..+.
T Consensus 382 eeEleelEeeLeeLqeqLaelqqel~elQ~el 413 (1486)
T PRK04863 382 EARAEAAEEEVDELKSQLADYQQALDVQQTRA 413 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444333
No 155
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=71.97 E-value=38 Score=32.48 Aligned_cols=32 Identities=31% Similarity=0.341 Sum_probs=22.5
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHhHhhhcccc
Q 027451 181 ALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRL 214 (223)
Q Consensus 181 aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~~ 214 (223)
.|+.=-+|...|-.| .|.+.++.+|...++++
T Consensus 294 rl~elreg~e~e~~r--kelE~lR~~L~kAEkel 325 (575)
T KOG4403|consen 294 RLSELREGVENETSR--KELEQLRVALEKAEKEL 325 (575)
T ss_pred hhhhhhcchhHHHHH--HHHHHHHHHHHHHHHHH
Confidence 444444577666655 68888999988888776
No 156
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=71.54 E-value=54 Score=35.36 Aligned_cols=53 Identities=21% Similarity=0.208 Sum_probs=35.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHH
Q 027451 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQN 202 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~ 202 (223)
.+.++...+++||.+...-..+.+.+++.+.+.|.|+.+-+...+.|.+.++.
T Consensus 1620 ~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~ 1672 (1758)
T KOG0994|consen 1620 QLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYEL 1672 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666766666666677777778888888888777777766555544
No 157
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=71.53 E-value=34 Score=24.42 Aligned_cols=15 Identities=13% Similarity=0.419 Sum_probs=6.2
Q ss_pred HhHHHHHHHHHHHHH
Q 027451 150 QMTTLKLKLKDLESE 164 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~e 164 (223)
+|+.+..++++|+.+
T Consensus 19 ti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 19 TIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444433
No 158
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=70.97 E-value=21 Score=29.82 Aligned_cols=43 Identities=23% Similarity=0.365 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHH
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEEN 200 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~ 200 (223)
++.|+++|..+++..+ .+......||..+..++.|-|+-.+.|
T Consensus 125 L~~eI~~L~~~i~~le----~~~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 125 LEDEIKQLEKEIQRLE----EIQSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555332 334456677777777777776665554
No 159
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=70.97 E-value=41 Score=35.18 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhHhh
Q 027451 158 LKDLESELETKSKEANAAETNAVALRKQSEG 188 (223)
Q Consensus 158 ~~~Lk~el~~~~~el~~~~~d~~aLKkQae~ 188 (223)
.+-|+.+++..++.+..-+.|++.||...++
T Consensus 327 aesLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 327 AESLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457888888888777888899999976653
No 160
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=70.85 E-value=25 Score=27.03 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=16.6
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHH
Q 027451 144 IKALEDQMTTLKLKLKDLESELETKS 169 (223)
Q Consensus 144 ~~~~~~~~~~l~~e~~~Lk~el~~~~ 169 (223)
...+.+||+.|+-|++.|...|...+
T Consensus 31 ~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 31 LQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666777777777777666443
No 161
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=70.53 E-value=41 Score=32.51 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 027451 105 MIDRLHHYIRELRIRRKTMEAIKNQSRGF 133 (223)
Q Consensus 105 vI~R~~~li~~l~~~~~~~~al~kQa~~~ 133 (223)
++.++-.+=.++..+..+.+.++++.+..
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L 92 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERL 92 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666676654433
No 162
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=70.53 E-value=85 Score=28.58 Aligned_cols=6 Identities=33% Similarity=0.318 Sum_probs=2.1
Q ss_pred HHHHHH
Q 027451 196 LLEENQ 201 (223)
Q Consensus 196 L~~e~~ 201 (223)
|.++++
T Consensus 276 Lk~~~~ 281 (312)
T smart00787 276 LKEQLK 281 (312)
T ss_pred HHHHHH
Confidence 333333
No 163
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=70.45 E-value=35 Score=24.71 Aligned_cols=52 Identities=19% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 158 ~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
+.++++-+++.++-+...+.+++.+.+|+.++..+-+++.++-+.-.++++.
T Consensus 21 l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~ 72 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDP 72 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
No 164
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=70.22 E-value=24 Score=24.04 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=9.8
Q ss_pred HHHHHHhHhhHHHHHHHHHH
Q 027451 179 AVALRKQSEGFLFEYDRLLE 198 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~ 198 (223)
.+.|+++...+..+++.|..
T Consensus 42 n~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 42 NEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555544443
No 165
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=70.19 E-value=88 Score=29.65 Aligned_cols=25 Identities=24% Similarity=0.137 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 027451 106 IDRLHHYIRELRIRRKTMEAIKNQS 130 (223)
Q Consensus 106 I~R~~~li~~l~~~~~~~~al~kQa 130 (223)
-.++...-.++...++..+.+.++.
T Consensus 210 ~~~l~~~~~~l~~~~a~~~~l~~~l 234 (498)
T TIGR03007 210 QEELEAARLELNEAIAQRDALKRQL 234 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555556666666666666543
No 166
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=70.11 E-value=26 Score=27.54 Aligned_cols=30 Identities=27% Similarity=0.312 Sum_probs=25.0
Q ss_pred HHHHhhhHHHHHHHhHhhHHHHHHHHHHHH
Q 027451 171 EANAAETNAVALRKQSEGFLFEYDRLLEEN 200 (223)
Q Consensus 171 el~~~~~d~~aLKkQae~l~~EYDrL~~e~ 200 (223)
.+..++.-+++++.+.++++..|+||..|-
T Consensus 66 ~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV 95 (132)
T PF10392_consen 66 SIEELESVLQAVRSSVESLQSSYERLRSEV 95 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788999999999999999998774
No 167
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=69.51 E-value=1.1e+02 Score=29.68 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHH
Q 027451 164 ELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEE 199 (223)
Q Consensus 164 el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e 199 (223)
+|+.++++|..-+.+++..+++.+.+..+++++.++
T Consensus 98 ~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~ 133 (514)
T TIGR03319 98 SLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAE 133 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555555555555544433
No 168
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=69.19 E-value=44 Score=33.83 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=19.1
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 180 VALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 180 ~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
+.+|.....++.|+++|..|.....+++.
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~ 569 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIR 569 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777778777777655444444
No 169
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=69.13 E-value=1.2e+02 Score=29.74 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 156 ~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
..+..++..+...+.++..-...++.|.++-+....+++.+.+.|+.+++++..
T Consensus 101 ~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~ 154 (560)
T PF06160_consen 101 QAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLA 154 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777888899999999999999999999999988843
No 170
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=69.06 E-value=1.1e+02 Score=29.20 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=17.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 027451 94 TLMGASLFLAFMIDRLHHYIRELRIRR 120 (223)
Q Consensus 94 YIsGF~LFL~lvI~R~~~li~~l~~~~ 120 (223)
-|-.|.+|+|++.+=++.-|...+.-+
T Consensus 7 qlInFlIl~~lL~kfl~~Pi~~~l~~R 33 (445)
T PRK13428 7 QLIGFAVIVFLVWRFVVPPVRRLMAAR 33 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888877666666555554443
No 171
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.02 E-value=46 Score=34.32 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhc
Q 027451 152 TTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLD 211 (223)
Q Consensus 152 ~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~ 211 (223)
..+..+...+|.++..+-.+.+.+..+++.|+++..++.+|-.+...+..+++.+...++
T Consensus 809 ~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~ 868 (970)
T KOG0946|consen 809 QELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGN 868 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhh
Confidence 334556777888888888788888889999999999999988777777777776665443
No 172
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=68.94 E-value=87 Score=33.63 Aligned_cols=46 Identities=22% Similarity=0.246 Sum_probs=22.8
Q ss_pred HHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhcccccCCC
Q 027451 173 NAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHSG 218 (223)
Q Consensus 173 ~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~~~~~~ 218 (223)
..++.....++++-+..+.+.+....+.++++.+++..++..+..+
T Consensus 493 ~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~ 538 (1201)
T PF12128_consen 493 EELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQK 538 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 3333334444444444444444444444556666666666666443
No 173
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=68.86 E-value=38 Score=23.85 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=27.1
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhccc
Q 027451 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWR 213 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~ 213 (223)
+...|+.|..++..|=+.|.+.++..+.+++.+=.|
T Consensus 22 EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~R 57 (65)
T TIGR02449 22 ENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITR 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888888888888888777777754333
No 174
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.81 E-value=62 Score=32.10 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=14.7
Q ss_pred HHHHHHHhHhhH---HHHHHHHHHHHHHHH
Q 027451 178 NAVALRKQSEGF---LFEYDRLLEENQNLR 204 (223)
Q Consensus 178 d~~aLKkQae~l---~~EYDrL~~e~~~l~ 204 (223)
+.-.|+||..+| +=||..|.-|...+.
T Consensus 178 ENIsLQKqVs~LR~sQVEyEglkheikRle 207 (772)
T KOG0999|consen 178 ENISLQKQVSNLRQSQVEYEGLKHEIKRLE 207 (772)
T ss_pred hcchHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 445677776655 445655554444433
No 175
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=68.77 E-value=73 Score=28.93 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=7.7
Q ss_pred HHHHhHhhHHHHHHHHHHHH
Q 027451 181 ALRKQSEGFLFEYDRLLEEN 200 (223)
Q Consensus 181 aLKkQae~l~~EYDrL~~e~ 200 (223)
-..++++.+..+++.+..+.
T Consensus 218 e~~~~~~e~~ee~~~~~~el 237 (294)
T COG1340 218 ELSKKIDELHEEFRNLQNEL 237 (294)
T ss_pred HHHHHhHHHHHHHHHHHHHH
Confidence 33333333444444333333
No 176
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=68.54 E-value=21 Score=28.72 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=18.6
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
-+++|.+|.+|+..|=+.|+.+-+.|.+.++
T Consensus 39 t~~~l~~qv~gi~~eT~~Ll~K~N~L~eDvq 69 (139)
T COG4768 39 TLKGLTSQVDGITHETEELLHKTNTLAEDVQ 69 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666666666666666666666555443
No 177
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=68.46 E-value=54 Score=32.77 Aligned_cols=56 Identities=27% Similarity=0.410 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 027451 151 MTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (223)
Q Consensus 151 ~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~ 206 (223)
.+.+..++..++..++.++.++.....+.+....+...-..+|-.+..|.+.|.++
T Consensus 204 l~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q 259 (617)
T PF15070_consen 204 LGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQ 259 (617)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455556666666666655555555555555555666777777777776654
No 178
>PRK11519 tyrosine kinase; Provisional
Probab=68.33 E-value=46 Score=33.53 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=19.8
Q ss_pred hhhHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027451 175 AETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (223)
Q Consensus 175 ~~~d~~aLKkQae~l~~EYDrL~~e~~~l~ 204 (223)
.+.+...|+-+.+-.+.-|+.++...++++
T Consensus 368 ~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 368 TQQEIVRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666677777777777777766654
No 179
>PRK04863 mukB cell division protein MukB; Provisional
Probab=68.23 E-value=66 Score=35.49 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHH
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEE 199 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e 199 (223)
++++|+.++++...++..++.+++.+..+.+.++.+.+.+..+
T Consensus 356 ~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeq 398 (1486)
T PRK04863 356 DLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQ 398 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333344444443334444433333
No 180
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=68.13 E-value=58 Score=25.78 Aligned_cols=21 Identities=33% Similarity=0.321 Sum_probs=7.7
Q ss_pred HHHhHhhHHHHHHHHHHHHHH
Q 027451 182 LRKQSEGFLFEYDRLLEENQN 202 (223)
Q Consensus 182 LKkQae~l~~EYDrL~~e~~~ 202 (223)
+|.|......+|..|..++..
T Consensus 60 ~r~~l~~~~~~~~~L~~~~~~ 80 (150)
T PF07200_consen 60 LRSQLQELYEELKELESEYQE 80 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 181
>PRK14148 heat shock protein GrpE; Provisional
Probab=68.09 E-value=25 Score=29.95 Aligned_cols=40 Identities=28% Similarity=0.351 Sum_probs=28.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhh
Q 027451 149 DQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEG 188 (223)
Q Consensus 149 ~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~ 188 (223)
++++.+.+++++|+.++++.+..+.++.+|.+..+|..+.
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~r 79 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777777777777888877776543
No 182
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=68.04 E-value=35 Score=23.23 Aligned_cols=23 Identities=13% Similarity=0.050 Sum_probs=9.7
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHH
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQ 201 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~ 201 (223)
.+-+++..+.+..-..+|++=|+
T Consensus 23 n~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 23 NEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 183
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=67.99 E-value=75 Score=26.95 Aligned_cols=20 Identities=25% Similarity=0.217 Sum_probs=7.9
Q ss_pred HHHHHHHhHhhHHHHHHHHH
Q 027451 178 NAVALRKQSEGFLFEYDRLL 197 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~ 197 (223)
+.+.|.-+.+.+..|.|.|.
T Consensus 108 e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 108 EHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444333
No 184
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=67.96 E-value=50 Score=33.30 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 027451 102 LAFMIDRLHHYIRELRIRRKTMEAIKNQSR 131 (223)
Q Consensus 102 L~lvI~R~~~li~~l~~~~~~~~al~kQa~ 131 (223)
+-|+=.|+-.+=.++...+..+++.+++..
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~ 298 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQQRD 298 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445667777777788888888888877653
No 185
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=67.90 E-value=60 Score=28.41 Aligned_cols=17 Identities=41% Similarity=0.573 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhHh
Q 027451 192 EYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 192 EYDrL~~e~~~l~~~l~ 208 (223)
+|+.+.+|+++|++.+.
T Consensus 94 ~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 94 ELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34566677777777665
No 186
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=67.86 E-value=31 Score=26.29 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=11.5
Q ss_pred hhHHHHHHHhHhhHHHHHHHHHH
Q 027451 176 ETNAVALRKQSEGFLFEYDRLLE 198 (223)
Q Consensus 176 ~~d~~aLKkQae~l~~EYDrL~~ 198 (223)
+-++.++..+.++++.-=+.|.+
T Consensus 78 ~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 78 RGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555444444443
No 187
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=67.53 E-value=44 Score=31.63 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 027451 106 IDRLHHYIRELRIRRKTMEAIKN 128 (223)
Q Consensus 106 I~R~~~li~~l~~~~~~~~al~k 128 (223)
+.++..+=.+..+++.+.+.+++
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~ 49 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQA 49 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 188
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=67.34 E-value=87 Score=28.46 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHhHhhHHHH
Q 027451 165 LETKSKEANAAETNAVALRKQSEGFLFE 192 (223)
Q Consensus 165 l~~~~~el~~~~~d~~aLKkQae~l~~E 192 (223)
+...+.++..++.+++.++.+.+....+
T Consensus 205 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 232 (423)
T TIGR01843 205 RAEAQGELGRLEAELEVLKRQIDELQLE 232 (423)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444443333
No 189
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=67.24 E-value=42 Score=23.74 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=11.0
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 182 LRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 182 LKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
.-.|+...-.+-++|.+|.+.+++++
T Consensus 38 ~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 38 AERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444443
No 190
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=67.23 E-value=24 Score=30.19 Aligned_cols=39 Identities=31% Similarity=0.362 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHH
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEE 199 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e 199 (223)
|=+.||.+...+.... ++++++|+|......-||-|+..
T Consensus 57 eEe~LKs~~q~K~~~a----anL~~lr~Ql~emee~~~~llrQ 95 (211)
T COG3167 57 EEEELKSTYQQKAIQA----ANLEALRAQLAEMEERFDILLRQ 95 (211)
T ss_pred HHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHHHHHHHh
Confidence 3345555555443322 46888999988888888877643
No 191
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=66.52 E-value=42 Score=23.49 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=18.0
Q ss_pred hHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhh
Q 027451 177 TNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSL 210 (223)
Q Consensus 177 ~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~ 210 (223)
..++.|-...-..+++-|+|......|.+++...
T Consensus 18 ~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 18 DTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555556666666666666666666543
No 192
>PRK02119 hypothetical protein; Provisional
Probab=66.18 E-value=45 Score=23.76 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=17.7
Q ss_pred hHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 177 TNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 177 ~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
.-++.|-+..-..+++-|+|......+.+++..
T Consensus 23 ~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 23 NLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555556665555555555543
No 193
>PHA03011 hypothetical protein; Provisional
Probab=66.15 E-value=13 Score=28.62 Aligned_cols=27 Identities=19% Similarity=0.365 Sum_probs=16.2
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027451 178 NAVALRKQSEGFLFEYDRLLEENQNLR 204 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~~~l~ 204 (223)
|..+++.|.+++-..|+.|.+||+.+.
T Consensus 58 D~Nai~e~ldeL~~qYN~L~dEYn~i~ 84 (120)
T PHA03011 58 DINAIIEILDELIAQYNELLDEYNLIE 84 (120)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666665543
No 194
>PRK14143 heat shock protein GrpE; Provisional
Probab=66.04 E-value=26 Score=30.74 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=30.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q 027451 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l 189 (223)
++..+..++++|+.+++..+..+.++.+|.+.+||..+.-
T Consensus 68 ~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE 107 (238)
T PRK14143 68 RLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSRE 107 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788888888888888888888888888876543
No 195
>PRK11281 hypothetical protein; Provisional
Probab=65.90 E-value=96 Score=33.26 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=28.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q 027451 149 DQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQ 185 (223)
Q Consensus 149 ~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQ 185 (223)
+++++..++.++|++.++...++++.+.++++++|++
T Consensus 73 ~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~ 109 (1113)
T PRK11281 73 DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDD 109 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc
Confidence 3445556677888888888888888888888888874
No 196
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=65.77 E-value=1.7e+02 Score=30.18 Aligned_cols=37 Identities=14% Similarity=-0.005 Sum_probs=18.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027451 94 TLMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQS 130 (223)
Q Consensus 94 YIsGF~LFL~lvI~R~~~li~~l~~~~~~~~al~kQa 130 (223)
.+.+|+-=+++++..+++--..+.........++.+.
T Consensus 534 dLE~fieE~s~tLdwIls~~~SLqDv~s~~sEIK~~f 570 (769)
T PF05911_consen 534 DLERFIEEFSLTLDWILSNCFSLQDVSSMRSEIKKNF 570 (769)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHhh
Confidence 5555555555555555544444444444444454443
No 197
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=65.77 E-value=36 Score=33.73 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=33.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhh
Q 027451 150 QMTTLKLKLKDLESELETKSKEANAAE-------TNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSL 210 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~el~~~~~el~~~~-------~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~ 210 (223)
+++.+.+++++|+.++++.+.++...+ ..+..+-++.+.++.+.+.+.++-+++..+++..
T Consensus 564 ~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 564 EIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666665555553221 0244555556666666666666666666555543
No 198
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=65.76 E-value=56 Score=32.49 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=35.1
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----------------HhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 146 ALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALR----------------KQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 146 ~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLK----------------kQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
...+++..++.+++.+..++..+++..+.-+.+++.+. +.+.-...|-++.+.|.-.+|+++..
T Consensus 444 ~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~ 523 (594)
T PF05667_consen 444 QKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINS 523 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666554433333333322 22333344556666666666666665
Q ss_pred hcccc
Q 027451 210 LDWRL 214 (223)
Q Consensus 210 ~~~~~ 214 (223)
...|+
T Consensus 524 l~gkL 528 (594)
T PF05667_consen 524 LTGKL 528 (594)
T ss_pred HHHHH
Confidence 44443
No 199
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=65.74 E-value=42 Score=23.54 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHH
Q 027451 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRL 196 (223)
Q Consensus 156 ~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL 196 (223)
+++...+..+++.++++...|...++..++.+++...-+++
T Consensus 6 e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 6 EKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554444555566666666666555555
No 200
>PRK14161 heat shock protein GrpE; Provisional
Probab=65.70 E-value=18 Score=30.39 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=31.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q 027451 148 EDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (223)
Q Consensus 148 ~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l 189 (223)
.+.++...+++++|+.++++.+..+.++.+|.+..|+.++.-
T Consensus 18 ~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke 59 (178)
T PRK14161 18 EEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKA 59 (178)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667788888888888888888888888888876544
No 201
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=65.62 E-value=90 Score=32.10 Aligned_cols=52 Identities=19% Similarity=0.182 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 027451 155 KLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (223)
Q Consensus 155 ~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~ 206 (223)
+-|+++.-.+.+..+-.|+.+|++..+|.--..+-.+|-.||.+=.-.||+.
T Consensus 500 k~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~S 551 (861)
T PF15254_consen 500 KIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNS 551 (861)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555556666666665666667777774333334433
No 202
>PRK14160 heat shock protein GrpE; Provisional
Probab=65.28 E-value=45 Score=28.77 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=7.6
Q ss_pred HHhHhhHHHHHHHHHHHHHH
Q 027451 183 RKQSEGFLFEYDRLLEENQN 202 (223)
Q Consensus 183 KkQae~l~~EYDrL~~e~~~ 202 (223)
+++.+.+...|-|+..|+++
T Consensus 74 ~~e~~elkd~~lR~~AefeN 93 (211)
T PRK14160 74 ENELEALKDRLLRTVAEYDN 93 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444333
No 203
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=64.99 E-value=42 Score=22.96 Aligned_cols=10 Identities=20% Similarity=0.554 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 027451 157 KLKDLESELE 166 (223)
Q Consensus 157 e~~~Lk~el~ 166 (223)
+|..|+.++.
T Consensus 11 dVq~L~~kvd 20 (56)
T PF04728_consen 11 DVQTLNSKVD 20 (56)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 204
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=64.83 E-value=1e+02 Score=29.89 Aligned_cols=52 Identities=29% Similarity=0.353 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 158 ~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
+...+.+|+..+..|.++..+...|+.-++.|..|-.+...++..++++...
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~ 334 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKE 334 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667777777777777777777777777777777777777777665543
No 205
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=64.73 E-value=32 Score=33.25 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=23.5
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhH
Q 027451 145 KALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQS 186 (223)
Q Consensus 145 ~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQa 186 (223)
++++++++.++.|++.+..+.++.+.+++.-+.+++.|+.|.
T Consensus 79 sELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 79 AQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555454555555555555666666666665
No 206
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=64.60 E-value=44 Score=23.04 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=13.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 027451 150 QMTTLKLKLKDLESELETKSKEA 172 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~el~~~~~el 172 (223)
+++++.+++++++.++...++.|
T Consensus 5 E~~rL~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 5 EIERLEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666555544
No 207
>PRK14145 heat shock protein GrpE; Provisional
Probab=64.41 E-value=25 Score=30.04 Aligned_cols=40 Identities=28% Similarity=0.292 Sum_probs=27.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhh
Q 027451 149 DQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEG 188 (223)
Q Consensus 149 ~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~ 188 (223)
.++..+.+++++++.++++.+..+.++.+|.+..|+.++.
T Consensus 45 ~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~k 84 (196)
T PRK14145 45 DEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEK 84 (196)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566677777777777777777777788877776543
No 208
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=64.37 E-value=57 Score=24.30 Aligned_cols=26 Identities=27% Similarity=0.403 Sum_probs=17.7
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 184 KQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 184 kQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
++..+++.+-+.+.+|++.|+.+++.
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777777777766653
No 209
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=64.27 E-value=1.2e+02 Score=28.83 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 027451 107 DRLHHYIRELRIRRKTMEAIKNQ 129 (223)
Q Consensus 107 ~R~~~li~~l~~~~~~~~al~kQ 129 (223)
.|+-.+=.++...+.......++
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~ 60 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQ 60 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777777766665544
No 210
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=63.77 E-value=61 Score=27.48 Aligned_cols=27 Identities=33% Similarity=0.382 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhHh
Q 027451 161 LESELETKSKEANAAETNAVALRKQSE 187 (223)
Q Consensus 161 Lk~el~~~~~el~~~~~d~~aLKkQae 187 (223)
++..+..++.++.+.+..+..|++-++
T Consensus 87 ~~~klk~~~~el~k~~~~l~~L~~L~~ 113 (194)
T PF15619_consen 87 LERKLKDKDEELLKTKDELKHLKKLSE 113 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443
No 211
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=63.73 E-value=71 Score=25.99 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=9.6
Q ss_pred hhHHHHHHHhHhhHHHHHHHH
Q 027451 176 ETNAVALRKQSEGFLFEYDRL 196 (223)
Q Consensus 176 ~~d~~aLKkQae~l~~EYDrL 196 (223)
+..++.+-.++..-...|+.|
T Consensus 58 q~~L~~~ae~I~~~L~yF~~L 78 (157)
T PF04136_consen 58 QTRLEELAEEISEKLQYFEEL 78 (157)
T ss_pred HHHHHHHHHHHHHHhHHHhhH
Confidence 334444444444444445444
No 212
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=63.70 E-value=55 Score=23.90 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=26.1
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhh
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQSL 210 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~ 210 (223)
-...|-|.+-|.++|.+.+.++++++.....-
T Consensus 66 ~~~~k~~~~KL~~df~~~l~~fq~~q~~~~~~ 97 (102)
T PF14523_consen 66 DRQQKLQREKLSRDFKEALQEFQKAQRRYAEK 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667889999999999999999998876543
No 213
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=63.35 E-value=90 Score=26.21 Aligned_cols=94 Identities=22% Similarity=0.315 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhH
Q 027451 107 DRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQS 186 (223)
Q Consensus 107 ~R~~~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQa 186 (223)
.++-.+-.++..+++....+....+.+..+.. .+++-.....+++.+.++++.|+.+++....- --..++.++++.
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~-~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~---Dp~~i~~~~~~~ 144 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEAKKGRE-ESEEREELLEELEELKKELKELKKELEKYSEN---DPEKIEKLKEEI 144 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHH
Confidence 34455555666666666655555443332211 12233344445555555666666655533220 012366777777
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 027451 187 EGFLFEYDRLLEENQNLR 204 (223)
Q Consensus 187 e~l~~EYDrL~~e~~~l~ 204 (223)
.....+-+|-.|-..-++
T Consensus 145 ~~~~~~anrwTDNI~~l~ 162 (188)
T PF03962_consen 145 KIAKEAANRWTDNIFSLK 162 (188)
T ss_pred HHHHHHHHHHHhhHHHHH
Confidence 777777777766655544
No 214
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=63.28 E-value=17 Score=24.63 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=28.4
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhccc
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWR 213 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~ 213 (223)
..+|-.|++....+++.+...++.|+.++...++|
T Consensus 19 MK~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~R 53 (53)
T PF08898_consen 19 MKALAAQAEQQLAEAGDIAAALEKLKAEIAKLEAR 53 (53)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhcC
Confidence 45566788888888899988888898888887776
No 215
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=62.65 E-value=61 Score=24.02 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=25.5
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
--+.+-|.+.|.+.|-.++.+|+..|..-.
T Consensus 84 ~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~ 113 (117)
T smart00503 84 DRTRKAQTEKLRKKFKEVMNEFQRLQRKYR 113 (117)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788999999999999999999887654
No 216
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=62.62 E-value=1e+02 Score=26.71 Aligned_cols=88 Identities=16% Similarity=0.139 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 027451 105 MIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRK 184 (223)
Q Consensus 105 vI~R~~~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKk 184 (223)
+|-+-..+=.++...+...+.+..++..+=..+ ..+-+.... .+...|+..++..+..+..+...++.|++
T Consensus 50 ~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g--~E~LAr~al-------~~~~~le~~~~~~~~~~~~~~~~~~~l~~ 120 (225)
T COG1842 50 AIARQKQLERKLEEAQARAEKLEEKAELALQAG--NEDLAREAL-------EEKQSLEDLAKALEAELQQAEEQVEKLKK 120 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666666666666554433211 111122222 23444555555555555555556666666
Q ss_pred hHhhHHHHHHHHHHHHH
Q 027451 185 QSEGFLFEYDRLLEENQ 201 (223)
Q Consensus 185 Qae~l~~EYDrL~~e~~ 201 (223)
+...|..-|..+....+
T Consensus 121 ~~~~Le~Ki~e~~~~~~ 137 (225)
T COG1842 121 QLAALEQKIAELRAKKE 137 (225)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666665555544
No 217
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=62.47 E-value=84 Score=25.56 Aligned_cols=26 Identities=15% Similarity=0.108 Sum_probs=17.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 027451 95 LMGASLFLAFMIDRLHHYIRELRIRR 120 (223)
Q Consensus 95 IsGF~LFL~lvI~R~~~li~~l~~~~ 120 (223)
+-.|.+|+|+|..=++.-+......+
T Consensus 13 ~i~F~ill~ll~~~~~~pi~~~l~~R 38 (161)
T COG0711 13 LIAFVILLWLLKKFVWKPILKALDER 38 (161)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55788999888776666555544433
No 218
>COG2841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.18 E-value=13 Score=26.67 Aligned_cols=30 Identities=13% Similarity=0.290 Sum_probs=23.0
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHhHhhh
Q 027451 181 ALRKQSEGFLFEYDRLLEENQNLRNQLQSL 210 (223)
Q Consensus 181 aLKkQae~l~~EYDrL~~e~~~l~~~l~~~ 210 (223)
.+-++..+....|+||.++|++|-+.+...
T Consensus 7 ~~is~Lk~~dahF~rLfd~hn~LDd~I~~~ 36 (72)
T COG2841 7 DLISKLKANDAHFARLFDKHNELDDRIKRA 36 (72)
T ss_pred HHHHHHhccchHHHHHHHHHhHHHHHHHHH
Confidence 345667778888999999999988777643
No 219
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=62.06 E-value=99 Score=35.08 Aligned_cols=14 Identities=14% Similarity=0.252 Sum_probs=5.2
Q ss_pred hhHHHHHHHhHhhH
Q 027451 176 ETNAVALRKQSEGF 189 (223)
Q Consensus 176 ~~d~~aLKkQae~l 189 (223)
+..+..|++...++
T Consensus 963 e~~~~~l~~e~~~~ 976 (1930)
T KOG0161|consen 963 ENKLKNLEEEINSL 976 (1930)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 220
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=61.85 E-value=53 Score=23.09 Aligned_cols=43 Identities=14% Similarity=0.148 Sum_probs=23.6
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q 027451 147 LEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (223)
Q Consensus 147 ~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l 189 (223)
+..+|..+.+++..+..|=.........|..-+++|-.+..++
T Consensus 19 L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 19 LKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3344444555555555554444445555556677777666554
No 221
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.34 E-value=49 Score=34.12 Aligned_cols=57 Identities=28% Similarity=0.385 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 152 TTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 152 ~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
+.|+.++..|...|....-++.+++..++.+.+|.+---.|.|.|..+.+++|..+.
T Consensus 447 etLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~ 503 (1118)
T KOG1029|consen 447 ETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQ 503 (1118)
T ss_pred HHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455666777888888888877788777776666665554
No 222
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=60.86 E-value=1.4e+02 Score=27.50 Aligned_cols=66 Identities=26% Similarity=0.375 Sum_probs=52.0
Q ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHH--------------HHHHHHHHHHHHhH
Q 027451 142 EEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEY--------------DRLLEENQNLRNQL 207 (223)
Q Consensus 142 ~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EY--------------DrL~~e~~~l~~~l 207 (223)
.+-+.+..+++.+..+++.|+.++.....|..-...+.++.|-.+.-|+.|- |.|+.|+--|+.++
T Consensus 126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl 205 (319)
T PF09789_consen 126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERL 205 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHH
Confidence 4455667777778888888888888888888888899999999999998884 77777775554444
No 223
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=60.43 E-value=1.1e+02 Score=31.49 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=18.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027451 89 HLLEATLMGASLFLAFMIDRLHHYIR 114 (223)
Q Consensus 89 ~~~q~YIsGF~LFL~lvI~R~~~li~ 114 (223)
.-+.-.|-.|++.|-.+++.-.++..
T Consensus 533 adLE~fieE~s~tLdwIls~~~SLqD 558 (769)
T PF05911_consen 533 ADLERFIEEFSLTLDWILSNCFSLQD 558 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHccchHHH
Confidence 34455678888888888888777755
No 224
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=60.30 E-value=1.3e+02 Score=30.57 Aligned_cols=31 Identities=10% Similarity=0.164 Sum_probs=16.8
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
+++.++.|..++..--+.+....+..+.+++
T Consensus 640 EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 640 ELERMKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666555555544444444443
No 225
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=60.30 E-value=1.2e+02 Score=32.38 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=19.0
Q ss_pred hHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 177 TNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 177 ~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
+.+...++-+++.+++|+.+.++.+++++++..
T Consensus 303 ~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~a 335 (1141)
T KOG0018|consen 303 KRLEEIEKDIETAKKDYRALKETIERLEKELKA 335 (1141)
T ss_pred hHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344555555566666666666666666555543
No 226
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=60.25 E-value=51 Score=22.36 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=13.6
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l~~~ 206 (223)
+..|...-+.|..+++.|..++..|+.+
T Consensus 35 ~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 35 VEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444555555555555555444443
No 227
>PLN02678 seryl-tRNA synthetase
Probab=60.15 E-value=67 Score=30.79 Aligned_cols=29 Identities=10% Similarity=-0.034 Sum_probs=16.3
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
...||+|.+.++.+++.+.++...+-..+
T Consensus 80 ~~~Lk~ei~~le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 80 TKELKKEITEKEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44566666666666666655555444333
No 228
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=60.15 E-value=1.6e+02 Score=29.40 Aligned_cols=37 Identities=24% Similarity=0.272 Sum_probs=22.3
Q ss_pred HHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 171 el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
.+++|-+....||.|...++.-|-.|..++-.+.+.+
T Consensus 154 t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~l 190 (617)
T PF15070_consen 154 TASRALSQNRELKEQLAELQDAFVKLTNENMELTSAL 190 (617)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHH
Confidence 3445555556777777777777777766664443333
No 229
>PRK14153 heat shock protein GrpE; Provisional
Probab=60.11 E-value=39 Score=28.74 Aligned_cols=37 Identities=14% Similarity=0.147 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhh
Q 027451 152 TTLKLKLKDLESELETKSKEANAAETNAVALRKQSEG 188 (223)
Q Consensus 152 ~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~ 188 (223)
..+..++++++.++++.+..+.++.+|.+..||..+.
T Consensus 36 ~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~k 72 (194)
T PRK14153 36 STADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAR 72 (194)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777777777776553
No 230
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=60.08 E-value=55 Score=22.69 Aligned_cols=8 Identities=25% Similarity=0.289 Sum_probs=3.1
Q ss_pred HHHHHHhH
Q 027451 179 AVALRKQS 186 (223)
Q Consensus 179 ~~aLKkQa 186 (223)
++.|+++.
T Consensus 48 i~~L~~e~ 55 (61)
T PF08826_consen 48 IERLKKEM 55 (61)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 231
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=60.06 E-value=72 Score=30.99 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc
Q 027451 107 DRLHHYIRELRIRRKTMEAIKNQSRGFE 134 (223)
Q Consensus 107 ~R~~~li~~l~~~~~~~~al~kQa~~~~ 134 (223)
.|....-.+|...++++..+++|...+.
T Consensus 27 e~~~~~e~eL~~~qeel~~~k~~l~~~E 54 (522)
T PF05701_consen 27 ERVKEKETELEKAQEELAKLKEQLEAAE 54 (522)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566666666666666655443
No 232
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=59.78 E-value=1.2e+02 Score=32.16 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhc
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLD 211 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~ 211 (223)
+.+++.+++..|+.++.-+...+..-..+..|+.+++..++.-.++.+.+-.++...|
T Consensus 502 ~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~ 559 (1041)
T KOG0243|consen 502 LKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKD 559 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3444555555555555445555666677778888888888888777776666654443
No 233
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=59.70 E-value=27 Score=31.64 Aligned_cols=35 Identities=26% Similarity=0.183 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHH
Q 027451 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLL 197 (223)
Q Consensus 156 ~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~ 197 (223)
.|-+.|..|++..++ ..+.||.|+..+.+|.++|.
T Consensus 248 ae~E~l~ge~~~Le~-------rN~~LK~qa~~lerEI~ylK 282 (294)
T KOG4571|consen 248 AEKEALLGELEGLEK-------RNEELKDQASELEREIRYLK 282 (294)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 344555555655554 47888899998888887774
No 234
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=59.70 E-value=1.7e+02 Score=28.29 Aligned_cols=26 Identities=8% Similarity=0.342 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Q 027451 106 IDRLHHYIRELRIRRKTMEAIKNQSR 131 (223)
Q Consensus 106 I~R~~~li~~l~~~~~~~~al~kQa~ 131 (223)
+++++.=+..|-.++.+++.+++..+
T Consensus 244 v~km~kdle~Lq~aEqsl~dlQk~Le 269 (575)
T KOG4403|consen 244 VNKMMKDLEGLQRAEQSLEDLQKRLE 269 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666665555433
No 235
>PRK14148 heat shock protein GrpE; Provisional
Probab=59.67 E-value=47 Score=28.28 Aligned_cols=29 Identities=24% Similarity=0.221 Sum_probs=16.3
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
++.++++++.+...|-|+..|.++.++..
T Consensus 49 l~~l~~e~~elkd~~lR~~Ae~eN~rKR~ 77 (195)
T PRK14148 49 IKELEDSCDQFKDEALRAKAEMENIRKRA 77 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555666666666555444
No 236
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=59.67 E-value=1.7e+02 Score=28.73 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 027451 115 ELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETK 168 (223)
Q Consensus 115 ~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~ 168 (223)
+.+.+.++.+++.++...+.. +.+...+++....+.+..|+.||+..
T Consensus 435 Ka~~f~~Ec~aL~~rL~~aE~-------ek~~l~eeL~~a~~~i~~LqDEL~TT 481 (518)
T PF10212_consen 435 KAVHFYAECRALQKRLESAEK-------EKESLEEELKEANQNISRLQDELETT 481 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555666555443322 22333344444444455555555443
No 237
>smart00338 BRLZ basic region leucin zipper.
Probab=59.45 E-value=40 Score=22.95 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=10.4
Q ss_pred HHHHHHhHhhHHHHHHHHHH
Q 027451 179 AVALRKQSEGFLFEYDRLLE 198 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~ 198 (223)
.+.|+.++..+..|++.|.+
T Consensus 42 n~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 42 NERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555443
No 238
>PHA01750 hypothetical protein
Probab=59.26 E-value=62 Score=22.99 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=10.1
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 027451 180 VALRKQSEGFLFEYDRLLEENQNLRNQ 206 (223)
Q Consensus 180 ~aLKkQae~l~~EYDrL~~e~~~l~~~ 206 (223)
+.|++|.+.+..--|.+.+...+++.+
T Consensus 45 dNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 45 DNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 333333333333333333333333333
No 239
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=59.18 E-value=32 Score=24.69 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027451 153 TLKLKLKDLESELETKSKEAN 173 (223)
Q Consensus 153 ~l~~e~~~Lk~el~~~~~el~ 173 (223)
.++-++..|+.+++.+++.+.
T Consensus 47 eLKve~~~L~~el~~~~~~l~ 67 (75)
T PF07989_consen 47 ELKVEVESLKRELQEKKKLLK 67 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 240
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.10 E-value=1.6e+02 Score=29.88 Aligned_cols=60 Identities=33% Similarity=0.474 Sum_probs=40.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
..+++.-++++|+.+|...+..+.-++...+.+..-.++..++-+.|..|+..|+.+++.
T Consensus 469 ~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e~ 528 (716)
T KOG4593|consen 469 RLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLER 528 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566677777777666666666666666666777888888888888777755543
No 241
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=58.93 E-value=1.7e+02 Score=28.09 Aligned_cols=57 Identities=21% Similarity=0.057 Sum_probs=45.1
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHH
Q 027451 144 IKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEEN 200 (223)
Q Consensus 144 ~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~ 200 (223)
...+..++..++..+..|+...++...+..+....++++.-|..-.++.|-|..+..
T Consensus 306 ~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~L 362 (502)
T KOG0982|consen 306 DQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDIL 362 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777788888888888888888888888889999999998888887665543
No 242
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=58.91 E-value=42 Score=31.79 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=15.1
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
...++++...+..++.++.++...+++++..
T Consensus 377 ~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 377 LKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444455555555555555555543
No 243
>PRK04406 hypothetical protein; Provisional
Probab=58.87 E-value=65 Score=23.12 Aligned_cols=39 Identities=5% Similarity=0.064 Sum_probs=21.3
Q ss_pred HHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 171 el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
.+.-.+.-++.|-+..-..+++-|+|......+.+++..
T Consensus 19 ~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 19 QLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333445555555555566666666666666555543
No 244
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=58.86 E-value=55 Score=33.25 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=12.1
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l~~~ 206 (223)
++.++.-++.|..-|++..+.++.|.++
T Consensus 588 ~~~l~~~ae~LaeR~e~a~d~Qe~L~~R 615 (717)
T PF10168_consen 588 RKSLRESAEKLAERYEEAKDKQEKLMKR 615 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333
No 245
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=58.75 E-value=14 Score=28.77 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=10.5
Q ss_pred hHHHHHHHhHhhHHHHHHHH
Q 027451 177 TNAVALRKQSEGFLFEYDRL 196 (223)
Q Consensus 177 ~d~~aLKkQae~l~~EYDrL 196 (223)
++++.+++|.+.++.+++.+
T Consensus 23 ~~l~~~~~~~~~~~~~l~~~ 42 (144)
T PF04350_consen 23 ANLEELKKQLEQLEQQLEEL 42 (144)
T ss_dssp SSHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555433
No 246
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=58.65 E-value=23 Score=25.22 Aligned_cols=13 Identities=8% Similarity=-0.043 Sum_probs=6.1
Q ss_pred HHHHHHHhHhhHH
Q 027451 178 NAVALRKQSEGFL 190 (223)
Q Consensus 178 d~~aLKkQae~l~ 190 (223)
+.+.|+.+...+.
T Consensus 46 en~~L~~ei~~l~ 58 (85)
T TIGR02209 46 EWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHc
Confidence 3445555544443
No 247
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=58.64 E-value=92 Score=33.44 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=10.7
Q ss_pred hhHHHHHHHhHhhHHHHHHHHHHHH
Q 027451 176 ETNAVALRKQSEGFLFEYDRLLEEN 200 (223)
Q Consensus 176 ~~d~~aLKkQae~l~~EYDrL~~e~ 200 (223)
+..+..+..+.+++..+.....+++
T Consensus 684 ~~~l~~l~~~l~~~~~e~~~~~~~~ 708 (1201)
T PF12128_consen 684 EEQLNELEEELKQLKQELEELLEEL 708 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443333
No 248
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=58.58 E-value=84 Score=29.72 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=20.2
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHHhHhhhccc
Q 027451 182 LRKQSEGFLFEYDRLLEENQNLRNQLQSLDWR 213 (223)
Q Consensus 182 LKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~ 213 (223)
.+++...+...|..+.++.++++.++......
T Consensus 373 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~ 404 (451)
T PF03961_consen 373 KKEQLKKLKEKKKELKEELKELKEELKELKEE 404 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666677777777777777666644433
No 249
>PRK14140 heat shock protein GrpE; Provisional
Probab=58.53 E-value=30 Score=29.36 Aligned_cols=40 Identities=10% Similarity=0.151 Sum_probs=29.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q 027451 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l 189 (223)
.++.+..++++++.++.+.+..+.++.+|.+..|+..+.=
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE 77 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKE 77 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666778888888888888888888888888866543
No 250
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=58.47 E-value=1.6e+02 Score=27.40 Aligned_cols=15 Identities=0% Similarity=0.131 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 027451 112 YIRELRIRRKTMEAI 126 (223)
Q Consensus 112 li~~l~~~~~~~~al 126 (223)
+..++..++.++..+
T Consensus 259 l~~~l~~le~~l~~l 273 (444)
T TIGR03017 259 LKTDIARAESKLAEL 273 (444)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444443333
No 251
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=57.98 E-value=2e+02 Score=28.38 Aligned_cols=16 Identities=13% Similarity=0.320 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHhHh
Q 027451 193 YDRLLEENQNLRNQLQ 208 (223)
Q Consensus 193 YDrL~~e~~~l~~~l~ 208 (223)
|...+.+..+.+..++
T Consensus 284 yAE~m~~~~EaeeELk 299 (596)
T KOG4360|consen 284 YAECMQMLHEAEEELK 299 (596)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333444443
No 252
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=57.92 E-value=12 Score=33.45 Aligned_cols=27 Identities=33% Similarity=0.294 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 027451 82 DQVLLANHLLEATLMGASLFLAFMIDRLHH 111 (223)
Q Consensus 82 ~~~~~r~~~~q~YIsGF~LFL~lvI~R~~~ 111 (223)
.++++|.||+=-|| +||++|+|+=+.-
T Consensus 163 lnylARNFYNlr~l---ALflAFaINFILL 189 (274)
T PF06459_consen 163 LNYLARNFYNLRFL---ALFLAFAINFILL 189 (274)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 35789999988787 5999999986543
No 253
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=57.86 E-value=98 Score=24.86 Aligned_cols=15 Identities=40% Similarity=0.534 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHH
Q 027451 190 LFEYDRLLEENQNLR 204 (223)
Q Consensus 190 ~~EYDrL~~e~~~l~ 204 (223)
++...||..|++.++
T Consensus 81 e~~i~rL~~ENe~lR 95 (135)
T TIGR03495 81 EQRIERLKRENEDLR 95 (135)
T ss_pred HHHHHHHHHcCHHHH
Confidence 344556777777665
No 254
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.85 E-value=35 Score=30.45 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=22.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 027451 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRK 184 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKk 184 (223)
.|+.+++||..|++.|..++..+-.-+..+..||-
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKa 260 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKA 260 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCc
Confidence 34557778888888888887766444444444443
No 255
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=57.80 E-value=1.1e+02 Score=25.64 Aligned_cols=95 Identities=12% Similarity=0.125 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 027451 105 MIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRK 184 (223)
Q Consensus 105 vI~R~~~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKk 184 (223)
++..-..+=.++...+...+.+.+++.-+-.. +..+-+............++..|+.++........+.+.++..++.
T Consensus 49 ~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~--g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~ 126 (221)
T PF04012_consen 49 VMANQKRLERKLDEAEEEAEKWEKQAELALAA--GREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEA 126 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555443321 1111122222222333444555555555555544444445555555
Q ss_pred hHhhHHHHHHHHHHHHH
Q 027451 185 QSEGFLFEYDRLLEENQ 201 (223)
Q Consensus 185 Qae~l~~EYDrL~~e~~ 201 (223)
+...+...-+-|...++
T Consensus 127 kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 127 KLEELKSKREELKAREN 143 (221)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555544443
No 256
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=57.73 E-value=55 Score=34.58 Aligned_cols=52 Identities=27% Similarity=0.360 Sum_probs=34.1
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 027451 145 KALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNL 203 (223)
Q Consensus 145 ~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l 203 (223)
..+..+++.+.+++..|+.|+++|..-+. -|+.-.+.+.+|+++|..|.++.
T Consensus 173 ~hL~velAdle~kir~LrqElEEK~enll-------~lr~eLddleae~~klrqe~~e~ 224 (1195)
T KOG4643|consen 173 LHLEVELADLEKKIRTLRQELEEKFENLL-------RLRNELDDLEAEISKLRQEIEEF 224 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888899999999999998886444 44444444444555554444443
No 257
>PRK09343 prefoldin subunit beta; Provisional
Probab=57.71 E-value=88 Score=24.29 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=17.0
Q ss_pred hHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027451 177 TNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (223)
Q Consensus 177 ~d~~aLKkQae~l~~EYDrL~~e~~~l~~ 205 (223)
.+++.+.+|.+.+++.+..+.+...++-.
T Consensus 85 ~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 85 LRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677766666666655544444433
No 258
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=57.70 E-value=1.3e+02 Score=26.27 Aligned_cols=13 Identities=31% Similarity=0.414 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 027451 154 LKLKLKDLESELE 166 (223)
Q Consensus 154 l~~e~~~Lk~el~ 166 (223)
+.+|+++|++|+.
T Consensus 74 l~~en~~L~~e~~ 86 (276)
T PRK13922 74 LREENEELKKELL 86 (276)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555444
No 259
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=57.70 E-value=68 Score=25.18 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 027451 156 LKLKDLESELE 166 (223)
Q Consensus 156 ~e~~~Lk~el~ 166 (223)
.++++.+.++.
T Consensus 39 ~el~~yk~~V~ 49 (128)
T PF06295_consen 39 QELEQYKQEVN 49 (128)
T ss_pred HHHHHHHHHHH
Confidence 33444443333
No 260
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=57.70 E-value=33 Score=26.63 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=17.6
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHHHH
Q 027451 143 EIKALEDQMTTLKLKLKDLESELETK 168 (223)
Q Consensus 143 ~~~~~~~~~~~l~~e~~~Lk~el~~~ 168 (223)
....+.+||..|.-|++.|+..+.+.
T Consensus 30 ~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 30 QLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456667777777777777777743
No 261
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=57.50 E-value=1.8e+02 Score=27.76 Aligned_cols=11 Identities=18% Similarity=0.458 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q 027451 47 TVAGTVLVMLI 57 (223)
Q Consensus 47 ~~~~~l~vlF~ 57 (223)
|.+..+.+||+
T Consensus 54 iSA~tLailf~ 64 (499)
T COG4372 54 ISAATLAILFL 64 (499)
T ss_pred hhHHHHHHHHH
Confidence 33445555555
No 262
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=57.39 E-value=93 Score=25.56 Aligned_cols=93 Identities=20% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcccccccccccchHHHH----HhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHH
Q 027451 115 ELRIRRKTMEAIKNQSRGFEDGKAASSEEIK----ALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFL 190 (223)
Q Consensus 115 ~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~----~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~ 190 (223)
++..++++.+.+..|.+...........+.. ....+...+...++.|+.+.+.....++..-.....+..+=..+.
T Consensus 51 e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~ 130 (158)
T PF09744_consen 51 ELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELK 130 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHH
Q ss_pred HHHHHHHHHHHHHHHhH
Q 027451 191 FEYDRLLEENQNLRNQL 207 (223)
Q Consensus 191 ~EYDrL~~e~~~l~~~l 207 (223)
++|+++.+.+.++-..+
T Consensus 131 ~e~~~l~er~~e~l~~~ 147 (158)
T PF09744_consen 131 KEYNRLHERERELLRKL 147 (158)
T ss_pred HHHHHHHHHHHHHHHHH
No 263
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=57.28 E-value=59 Score=23.87 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhcch------hHHHHHHHHHHHH
Q 027451 4 LLFTVMFSEMALIMVLLFKT------PLRKLLIMSLDRV 36 (223)
Q Consensus 4 lvf~~L~~Em~~~llLvlPl------P~R~~~~~~l~~~ 36 (223)
+.-.++|+=.+.+-++|+|. -.||...+.+.+.
T Consensus 15 l~vl~~y~~l~~~YLlVvP~~l~~wm~~RWy~~~~~Er~ 53 (81)
T PF10716_consen 15 LLVLLAYAALAGLYLLVVPLILYFWMNKRWYVMSSFERL 53 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788889999999997 2788876666654
No 264
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=57.13 E-value=2.2e+02 Score=28.67 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027451 107 DRLHHYIRELRIRRKTMEAIKN 128 (223)
Q Consensus 107 ~R~~~li~~l~~~~~~~~al~k 128 (223)
..+..+-.++..++.+...+..
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~ 309 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLST 309 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666665555544
No 265
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=57.02 E-value=1.5e+02 Score=26.65 Aligned_cols=60 Identities=20% Similarity=0.331 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhc
Q 027451 152 TTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLD 211 (223)
Q Consensus 152 ~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~ 211 (223)
...+.|++.++.+++.++++++....-+.+++.....+..+=-|+.+...-++.++..+.
T Consensus 203 ~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 203 ELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334455555666666666666555555666666666665555555555555555555543
No 266
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=56.94 E-value=1.7e+02 Score=29.35 Aligned_cols=61 Identities=15% Similarity=0.291 Sum_probs=31.2
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh----HhhHHHHHHHHHHHHHHHHHhH
Q 027451 147 LEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQ----SEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 147 ~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQ----ae~l~~EYDrL~~e~~~l~~~l 207 (223)
+.++.....++++.+++.+......++...+++.-++.+ ......||.=++.|.+..+..+
T Consensus 187 L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri 251 (629)
T KOG0963|consen 187 LKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRI 251 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555555555555555555555 4555566655555554444333
No 267
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=56.81 E-value=1.8e+02 Score=29.78 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=9.2
Q ss_pred hHHHHHHHhHhhHHHHHH
Q 027451 177 TNAVALRKQSEGFLFEYD 194 (223)
Q Consensus 177 ~d~~aLKkQae~l~~EYD 194 (223)
.-++..+++++++.++.-
T Consensus 572 ~~~~~a~~~~~~~i~~lk 589 (771)
T TIGR01069 572 EALKALKKEVESIIRELK 589 (771)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555443
No 268
>PRK14163 heat shock protein GrpE; Provisional
Probab=56.80 E-value=51 Score=28.51 Aligned_cols=37 Identities=14% Similarity=0.272 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhh
Q 027451 152 TTLKLKLKDLESELETKSKEANAAETNAVALRKQSEG 188 (223)
Q Consensus 152 ~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~ 188 (223)
+.+.++++.|+.+++..+..+.++.+|.+..||..+.
T Consensus 43 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~k 79 (214)
T PRK14163 43 AGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVER 79 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888887777777888888888876554
No 269
>PRK14155 heat shock protein GrpE; Provisional
Probab=56.79 E-value=31 Score=29.66 Aligned_cols=39 Identities=13% Similarity=0.176 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHH
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFE 192 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~E 192 (223)
+.+++++|+.++++.+..+.++.+|.+..||..+.-..+
T Consensus 18 l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~ 56 (208)
T PRK14155 18 AAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMND 56 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777778777778888888888888876654433
No 270
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=56.77 E-value=40 Score=27.54 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhh
Q 027451 189 FLFEYDRLLEENQNLRNQLQSL 210 (223)
Q Consensus 189 l~~EYDrL~~e~~~l~~~l~~~ 210 (223)
+++..|.+.+|.++++++....
T Consensus 71 l~Rk~~kl~~el~~~~~~~~~~ 92 (161)
T PF04420_consen 71 LNRKLDKLEEELEKLNKSLSSE 92 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666655443
No 271
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=56.74 E-value=1.2e+02 Score=25.47 Aligned_cols=57 Identities=26% Similarity=0.252 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhh-HHHHHHHHHHHHHHHHHhHhh
Q 027451 153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSEG-FLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 153 ~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~-l~~EYDrL~~e~~~l~~~l~~ 209 (223)
.+..+++.|+.+.+..+.++...++..+++.+..+. .+.+-.+..+|.+.++.+.+.
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~q 181 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQ 181 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677778877777777766666666766666654 344555666666666655443
No 272
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=56.70 E-value=1.1e+02 Score=25.55 Aligned_cols=43 Identities=26% Similarity=0.366 Sum_probs=19.4
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHH
Q 027451 147 LEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEY 193 (223)
Q Consensus 147 ~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EY 193 (223)
+++||+.+..+++.|+.-.. +++.-.+...-|..+.+.+.+.|
T Consensus 125 L~~eI~~L~~~i~~le~~~~----~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 125 LEDEIKQLEKEIQRLEEIQS----KSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555554443222 22222223455555666665555
No 273
>PRK14147 heat shock protein GrpE; Provisional
Probab=56.65 E-value=47 Score=27.62 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l 189 (223)
+..++++|+.++++.+..+.++.+|.+..++..+.-
T Consensus 23 l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE 58 (172)
T PRK14147 23 LKAEVESLRSEIALVKADALRERADLENQRKRIARD 58 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777777888888765543
No 274
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=56.44 E-value=1.4e+02 Score=29.42 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 027451 25 LRKLLIMSLDRV 36 (223)
Q Consensus 25 ~R~~~~~~l~~~ 36 (223)
+|..+-..+...
T Consensus 29 ~K~~ie~~~sea 40 (555)
T TIGR03545 29 AKKAIERSLEKA 40 (555)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 275
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=56.31 E-value=1.5e+02 Score=30.39 Aligned_cols=39 Identities=28% Similarity=0.411 Sum_probs=29.4
Q ss_pred HHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhc
Q 027451 173 NAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLD 211 (223)
Q Consensus 173 ~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~ 211 (223)
..-..+++.+|||.+..+.+=|+|..+.+.|+.+++...
T Consensus 219 n~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 219 NRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334556778888888888888888888888887776554
No 276
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=56.21 E-value=1.2e+02 Score=25.47 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=7.2
Q ss_pred HHhHhhHHHHHHHHHH
Q 027451 183 RKQSEGFLFEYDRLLE 198 (223)
Q Consensus 183 KkQae~l~~EYDrL~~ 198 (223)
+.+.+....+|+.+..
T Consensus 119 ~~~l~~~~~e~~~~~~ 134 (201)
T PF12072_consen 119 KEELEEREEELEELIE 134 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444455544433
No 277
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=56.06 E-value=76 Score=23.19 Aligned_cols=44 Identities=25% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027451 155 KLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (223)
Q Consensus 155 ~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~ 205 (223)
.++-++|-.++..++. .+++|-...+....|.|.|..|++-||.
T Consensus 15 ~e~k~~Li~ei~~LQ~-------sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~ 58 (80)
T PF10224_consen 15 KEEKEELIQEILELQD-------SLEALSDRVEEVKEENEKLESENEYLQQ 58 (80)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 278
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=56.05 E-value=1.5e+02 Score=26.75 Aligned_cols=75 Identities=17% Similarity=0.167 Sum_probs=51.2
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhcccccCCCC
Q 027451 145 KALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHSGS 219 (223)
Q Consensus 145 ~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~~~~~~~ 219 (223)
..++.|+..+.+.-+.|+..-+...-++..-+..+.-|-.|...--+--++|..|...++..++..-.-.+..|.
T Consensus 63 s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~ 137 (307)
T PF10481_consen 63 SALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDV 137 (307)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 345556666666666666555555556666677777788888777777888888888888888866555554443
No 279
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=55.90 E-value=1.8e+02 Score=27.45 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027451 154 LKLKLKDLESELETKSKEAN---AAETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~---~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~ 204 (223)
+..+++.++.++++.+.++. ..+.++..|+.+.+..+.-|+.+.+.+++.+
T Consensus 329 l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 329 LEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444443332 2355666777777777777777777776654
No 280
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=55.89 E-value=66 Score=27.75 Aligned_cols=55 Identities=18% Similarity=0.269 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh-hhcccccCCC
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ-SLDWRLSHSG 218 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~-~~~~~~~~~~ 218 (223)
.|++||..+...+.+ +++.++.+.....+|+.-.......|.++. -..||+|-|+
T Consensus 33 ~Ie~LK~~i~~~E~~-------l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~ 88 (207)
T PF05546_consen 33 EIEKLKKSIEELEDE-------LEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSP 88 (207)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCh
Confidence 345555555544443 344444444455566666666666665555 4455555443
No 281
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=55.69 E-value=1.6e+02 Score=28.43 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=17.0
Q ss_pred hHHHHHhHHHhHHHHH-----------HHHHHHHHHHHHHHH
Q 027451 141 SEEIKALEDQMTTLKL-----------KLKDLESELETKSKE 171 (223)
Q Consensus 141 ~~~~~~~~~~~~~l~~-----------e~~~Lk~el~~~~~e 171 (223)
+-.++++..++..++. |++-|+.+|...-+.
T Consensus 384 ~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEA 425 (488)
T PF06548_consen 384 SRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEA 425 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH
Confidence 3345555555555443 556666666655443
No 282
>PRK00106 hypothetical protein; Provisional
Probab=55.50 E-value=1.9e+02 Score=28.44 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=9.8
Q ss_pred hhHHHHHHHhHhhHHHHHHHHHH
Q 027451 176 ETNAVALRKQSEGFLFEYDRLLE 198 (223)
Q Consensus 176 ~~d~~aLKkQae~l~~EYDrL~~ 198 (223)
+.+++..+++.+...++|+.+.+
T Consensus 131 ekeLe~reeeLee~~~~~~~~~~ 153 (535)
T PRK00106 131 EQSLTDKSKHIDEREEQVEKLEE 153 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 283
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=55.47 E-value=1.6e+02 Score=26.66 Aligned_cols=52 Identities=21% Similarity=0.253 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 158 ~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
....+.|.+...+.+++.|.+..+++...++.+..-..+.+|......++..
T Consensus 239 F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~ 290 (309)
T PF09728_consen 239 FETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEK 290 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666677888888888777777777776655544443
No 284
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=55.43 E-value=47 Score=25.60 Aligned_cols=11 Identities=36% Similarity=0.595 Sum_probs=5.6
Q ss_pred hHHHHHHHHHH
Q 027451 24 PLRKLLIMSLD 34 (223)
Q Consensus 24 P~R~~~~~~l~ 34 (223)
|+=|+.+..++
T Consensus 9 ~iDWr~i~~iD 19 (118)
T PF13815_consen 9 PIDWRLISAID 19 (118)
T ss_pred CCcHHHHhccC
Confidence 45555555444
No 285
>PRK14151 heat shock protein GrpE; Provisional
Probab=55.35 E-value=69 Score=26.77 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHH
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFE 192 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~E 192 (223)
+.+++++|+.++++.+..+.++.+|.+..||..+.-..+
T Consensus 25 l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~ 63 (176)
T PRK14151 25 LTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEK 63 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777778888888888877654433
No 286
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=55.34 E-value=18 Score=26.14 Aligned_cols=16 Identities=13% Similarity=0.436 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhcch
Q 027451 8 VMFSEMALIMVLLFKT 23 (223)
Q Consensus 8 ~L~~Em~~~llLvlPl 23 (223)
++++-+++|+++|.|+
T Consensus 5 fl~~plivf~ifVap~ 20 (75)
T PF06667_consen 5 FLFVPLIVFMIFVAPI 20 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 287
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=55.31 E-value=1.6e+02 Score=31.43 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~ 204 (223)
+...++.+++-|.....++.+-.+..+-+|.|.......|..+....+.|.
T Consensus 486 l~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe 536 (1195)
T KOG4643|consen 486 LLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELE 536 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555555566666666666666655444444433
No 288
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=55.11 E-value=72 Score=31.74 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHH
Q 027451 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDR 195 (223)
Q Consensus 158 ~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDr 195 (223)
+++|+.+++....++...+.+++.++.+...+..|..+
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~ 367 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEE 367 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 289
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=54.82 E-value=2.2e+02 Score=27.92 Aligned_cols=61 Identities=15% Similarity=0.241 Sum_probs=26.2
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 027451 146 ALEDQMTTLKLKLKDLESELETKSKEANAAET---NAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (223)
Q Consensus 146 ~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~---d~~aLKkQae~l~~EYDrL~~e~~~l~~~ 206 (223)
.+..+++...+|++.|+.....+...+.+... +++-|-..-+.|.+|-|+...+..+|.+.
T Consensus 334 kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~ 397 (622)
T COG5185 334 KLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKS 397 (622)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34444444444555555444444443333322 22233333344555555544444444433
No 290
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=54.69 E-value=1.1e+02 Score=26.26 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=22.9
Q ss_pred HHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhc
Q 027451 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLD 211 (223)
Q Consensus 171 el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~ 211 (223)
+..++..++...-++.+...+.|+..+.|.+..+.++...+
T Consensus 113 ~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~ 153 (251)
T cd07653 113 EGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKAD 153 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445555555555566666666666666655554433
No 291
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=54.46 E-value=1.5e+02 Score=30.91 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 027451 189 FLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 189 l~~EYDrL~~e~~~l~~~l 207 (223)
++.+|..+++|++.+.+++
T Consensus 181 ~~~q~~tkl~e~~~en~~l 199 (1265)
T KOG0976|consen 181 FNMEFQTKLAEANREKKAL 199 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444433
No 292
>smart00338 BRLZ basic region leucin zipper.
Probab=54.29 E-value=66 Score=21.82 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=16.5
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
+..|..+-+.|..+.+.|..++..+++++
T Consensus 35 ~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 35 VEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555556666666655555555544
No 293
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=54.18 E-value=1.3e+02 Score=26.42 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=38.0
Q ss_pred HHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhcccccCC
Q 027451 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHS 217 (223)
Q Consensus 171 el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~~~~~ 217 (223)
+..+++.+.+..-++.+.--+.||+.+.|.+..+.+.+..|.-++.|
T Consensus 115 ~~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~~~~ka~~d~~~s 161 (253)
T cd07676 115 DGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVT 161 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 44667778888888888889999999999999998887777655544
No 294
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=54.13 E-value=69 Score=26.91 Aligned_cols=13 Identities=38% Similarity=0.779 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 027451 154 LKLKLKDLESELE 166 (223)
Q Consensus 154 l~~e~~~Lk~el~ 166 (223)
|+-+++.|+.++.
T Consensus 117 L~~kI~~L~~~in 129 (181)
T PF04645_consen 117 LRLKISSLQKEIN 129 (181)
T ss_pred HHHHHHHHHHHhh
Confidence 3334444444443
No 295
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=53.94 E-value=1.3e+02 Score=25.56 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHH
Q 027451 157 KLKDLESELETKSKEANAAETNAV 180 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~ 180 (223)
++..++.+++..+.....|+.+.+
T Consensus 144 K~~~~~~ei~~~e~~~~~a~~~~e 167 (216)
T cd07627 144 KLNSLLSELEEAERRASELKKEFE 167 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333333333
No 296
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=53.87 E-value=1.4e+02 Score=26.79 Aligned_cols=26 Identities=15% Similarity=0.029 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhhHHHHHHHhHhhHHH
Q 027451 166 ETKSKEANAAETNAVALRKQSEGFLF 191 (223)
Q Consensus 166 ~~~~~el~~~~~d~~aLKkQae~l~~ 191 (223)
...+.||..+|++...-..|..|+.+
T Consensus 168 ~~LeqELvraEae~lvaEAqL~n~kR 193 (271)
T PF13805_consen 168 VVLEQELVRAEAENLVAEAQLSNIKR 193 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhH
Confidence 33444555555555444455444443
No 297
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=53.85 E-value=38 Score=23.45 Aligned_cols=11 Identities=18% Similarity=0.311 Sum_probs=4.8
Q ss_pred HHHHHHhHhhH
Q 027451 179 AVALRKQSEGF 189 (223)
Q Consensus 179 ~~aLKkQae~l 189 (223)
.+.|+.+.+.+
T Consensus 40 ~~~L~~ei~~l 50 (80)
T PF04977_consen 40 NEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHh
Confidence 34444444444
No 298
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=53.85 E-value=90 Score=23.21 Aligned_cols=45 Identities=22% Similarity=0.144 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHH
Q 027451 152 TTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRL 196 (223)
Q Consensus 152 ~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL 196 (223)
..+.+.+.+|..|....+.+...+..+.++|.-....|+.-.++-
T Consensus 27 ~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks 71 (96)
T PF08647_consen 27 TILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKS 71 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 334555666666666666665555555555555555554444333
No 299
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=53.64 E-value=77 Score=22.38 Aligned_cols=11 Identities=9% Similarity=0.356 Sum_probs=4.6
Q ss_pred HHHHHHHHhcc
Q 027451 120 RKTMEAIKNQS 130 (223)
Q Consensus 120 ~~~~~al~kQa 130 (223)
++...++....
T Consensus 4 ea~~~~Lr~rL 14 (69)
T PF14197_consen 4 EAEIATLRNRL 14 (69)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 300
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=53.58 E-value=2.7e+02 Score=31.54 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHh
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQSE 187 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQae 187 (223)
.+..+..++-.....+++++.++++||+.-+
T Consensus 725 ~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ 755 (1822)
T KOG4674|consen 725 TVHTLSQELLSANEKLEKLEAELSNLKQEKL 755 (1822)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555666666555443
No 301
>PRK00295 hypothetical protein; Provisional
Probab=53.43 E-value=76 Score=22.24 Aligned_cols=30 Identities=17% Similarity=-0.013 Sum_probs=13.2
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
++.|-+..-..+++-|+|......+.+++.
T Consensus 21 ie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 21 IQALNDVLVEQQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444
No 302
>PRK00106 hypothetical protein; Provisional
Probab=53.38 E-value=1.3e+02 Score=29.57 Aligned_cols=40 Identities=15% Similarity=0.118 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027451 165 LETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (223)
Q Consensus 165 l~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~ 204 (223)
|+.+++++.+.+.+++...+..+...+++++...+++.+.
T Consensus 113 LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~ 152 (535)
T PRK00106 113 LDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLE 152 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555666666666666666766666666543
No 303
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=53.36 E-value=66 Score=27.74 Aligned_cols=50 Identities=26% Similarity=0.321 Sum_probs=38.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHH
Q 027451 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEE 199 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e 199 (223)
+|+.++..|..++.++++...++..|+...+.--.+-.+.|+|-+.|+..
T Consensus 33 ~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqR 82 (207)
T PF05546_consen 33 EIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQR 82 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667778888888888888888888888887777777778887777654
No 304
>PRK14154 heat shock protein GrpE; Provisional
Probab=53.33 E-value=74 Score=27.42 Aligned_cols=38 Identities=21% Similarity=0.173 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHH
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLF 191 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~ 191 (223)
+.+++++++.++++.+..+.++.+|.+..||..+.-..
T Consensus 57 l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e 94 (208)
T PRK14154 57 LEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKA 94 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777788887776654433
No 305
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=53.17 E-value=53 Score=21.26 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=15.5
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
+.++|+..-+.|.+|=++|..+...|...+
T Consensus 13 ~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 13 SYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555555555555555555544
No 306
>KOG4052 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.04 E-value=17 Score=30.28 Aligned_cols=23 Identities=43% Similarity=0.648 Sum_probs=20.8
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHH
Q 027451 178 NAVALRKQSEGFLFEYDRLLEEN 200 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~ 200 (223)
++.+||+|+|++..||..+.+|-
T Consensus 146 evt~lk~qce~lleeyed~i~ew 168 (190)
T KOG4052|consen 146 EVTALKQQCESLLEEYEDLIEEW 168 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999998874
No 307
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=52.92 E-value=31 Score=25.61 Aligned_cols=33 Identities=36% Similarity=0.375 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l 189 (223)
++++|+.+++..+.++...+...+++++|.+-+
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555556655555555555667777766543
No 308
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=52.88 E-value=67 Score=21.87 Aligned_cols=18 Identities=11% Similarity=0.242 Sum_probs=8.6
Q ss_pred HHHHHHhHhhHHHHHHHH
Q 027451 179 AVALRKQSEGFLFEYDRL 196 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL 196 (223)
+.++|+|.+.+..+-+++
T Consensus 16 i~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 16 INTVKKENEEISESVEKI 33 (55)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555544444444444
No 309
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=52.74 E-value=1.1e+02 Score=26.44 Aligned_cols=15 Identities=7% Similarity=0.158 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhHHHH
Q 027451 49 AGTVLVMLISSVYNI 63 (223)
Q Consensus 49 ~~~l~vlF~Dai~~~ 63 (223)
+......|+||+..|
T Consensus 39 ~~~a~~~~~dAl~ki 53 (223)
T cd07605 39 LSQAAKVFFDALAKI 53 (223)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344566899999855
No 310
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=52.67 E-value=1.1e+02 Score=27.87 Aligned_cols=50 Identities=24% Similarity=0.176 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 158 ~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
|+-||..|++.++.+.....+..--.+..+-+-..+|.|..|...|+.++
T Consensus 114 vd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 114 VDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333222222222223333333344444444444444
No 311
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=52.62 E-value=2.4e+02 Score=28.71 Aligned_cols=53 Identities=25% Similarity=0.332 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHH-------HHHHHHHHHHHhHhhhcc
Q 027451 160 DLESELETKSKEANAAETNAVALRKQSEGFLFEYD-------RLLEENQNLRNQLQSLDW 212 (223)
Q Consensus 160 ~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYD-------rL~~e~~~l~~~l~~~~~ 212 (223)
++...++....++.+.++.++-++.|......|-+ |+-+|+.+|+.++.....
T Consensus 563 e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~ 622 (698)
T KOG0978|consen 563 EAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKK 622 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333333333444444444444444444444333 445555555555554433
No 312
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=52.41 E-value=50 Score=29.67 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=16.0
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
+.+.++...+.|..|..+..+-+++-++.++
T Consensus 54 ~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L~ 84 (298)
T PF11262_consen 54 EKERLKNLIDKLPEELKKHQEHVEKVKKRLQ 84 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554444444444
No 313
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=52.24 E-value=74 Score=21.76 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=12.4
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHH
Q 027451 147 LEDQMTTLKLKLKDLESELETKSKE 171 (223)
Q Consensus 147 ~~~~~~~l~~e~~~Lk~el~~~~~e 171 (223)
+..++..|..++.+|..++.....+
T Consensus 8 Ls~dVq~L~~kvdqLs~dv~~lr~~ 32 (56)
T PF04728_consen 8 LSSDVQTLNSKVDQLSSDVNALRAD 32 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555544443
No 314
>PLN02320 seryl-tRNA synthetase
Probab=52.14 E-value=1.1e+02 Score=29.97 Aligned_cols=23 Identities=17% Similarity=0.050 Sum_probs=9.8
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHH
Q 027451 180 VALRKQSEGFLFEYDRLLEENQN 202 (223)
Q Consensus 180 ~aLKkQae~l~~EYDrL~~e~~~ 202 (223)
..||++...+..+...+.++.++
T Consensus 140 k~lk~~i~~le~~~~~~~~~l~~ 162 (502)
T PLN02320 140 KNLKEGLVTLEEDLVKLTDELQL 162 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 315
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=52.07 E-value=1.5e+02 Score=30.50 Aligned_cols=61 Identities=26% Similarity=0.278 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHh--------hhHHHHHHHhHhhHHHH---HHHHHHHHHHHHHhHhh-------hcccccCCCCC
Q 027451 160 DLESELETKSKEANAA--------ETNAVALRKQSEGFLFE---YDRLLEENQNLRNQLQS-------LDWRLSHSGSK 220 (223)
Q Consensus 160 ~Lk~el~~~~~el~~~--------~~d~~aLKkQae~l~~E---YDrL~~e~~~l~~~l~~-------~~~~~~~~~~~ 220 (223)
.||..++.++.|+.++ ...+++|..|+.+--.+ ...|.++|++|+..+.. .+.+..+-|++
T Consensus 670 ~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~a~~~~~lkek~e~l~~e~~~~~~~~~~~~g~~~~~~~~ 748 (762)
T PLN03229 670 DLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNSSELKEKFEELEAELAAARETAAESNGSLKNDDDK 748 (762)
T ss_pred hHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHhhcccccccCCccCCCcc
Confidence 4555555555555444 25689999999876555 34788888888887744 44445444443
No 316
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.98 E-value=3e+02 Score=28.73 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHH
Q 027451 160 DLESELETKSKEANAAETNAVALRKQSEGFLFEYDR 195 (223)
Q Consensus 160 ~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDr 195 (223)
.++.++.+.++|.++.-.+++.++.|.+.+..+|..
T Consensus 546 ~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~ 581 (1118)
T KOG1029|consen 546 AIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNS 581 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 345555555555555555666666666666555543
No 317
>PLN02678 seryl-tRNA synthetase
Probab=51.38 E-value=62 Score=31.03 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 027451 105 MIDRLHHYIRELRIRRKTMEAIKNQ 129 (223)
Q Consensus 105 vI~R~~~li~~l~~~~~~~~al~kQ 129 (223)
.|.++..+=.+..++..+++.++.+
T Consensus 31 ~id~il~ld~~~r~l~~~~e~lr~e 55 (448)
T PLN02678 31 LVDEVIALDKEWRQRQFELDSLRKE 55 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666666666666666544
No 318
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=50.95 E-value=1.3e+02 Score=26.18 Aligned_cols=41 Identities=17% Similarity=0.296 Sum_probs=26.4
Q ss_pred HHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhccc
Q 027451 173 NAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWR 213 (223)
Q Consensus 173 ~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~ 213 (223)
.+.+.+++..-++.+..-+.|++.+.|.+..+.+.+..+.+
T Consensus 115 ~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~~ 155 (237)
T cd07657 115 QQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVVK 155 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344555555666666677888888887777777655543
No 319
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=50.91 E-value=2.2e+02 Score=27.74 Aligned_cols=9 Identities=0% Similarity=0.397 Sum_probs=5.6
Q ss_pred HHHHhHHHH
Q 027451 55 MLISSVYNI 63 (223)
Q Consensus 55 lF~Dai~~~ 63 (223)
+|+|-|+..
T Consensus 359 vfvDiinkL 367 (527)
T PF15066_consen 359 VFVDIINKL 367 (527)
T ss_pred HHHHHHHHH
Confidence 566666655
No 320
>PRK04325 hypothetical protein; Provisional
Probab=50.82 E-value=89 Score=22.27 Aligned_cols=31 Identities=16% Similarity=0.049 Sum_probs=14.8
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
++.|-+..-..+++-|+|......+.+++..
T Consensus 25 Ie~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 25 IDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444455555555555554443
No 321
>PRK14160 heat shock protein GrpE; Provisional
Probab=50.62 E-value=1.3e+02 Score=25.93 Aligned_cols=41 Identities=29% Similarity=0.298 Sum_probs=22.6
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHh
Q 027451 147 LEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSE 187 (223)
Q Consensus 147 ~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae 187 (223)
+.+++..+.+++++|+.+++..+..+.++.+|.+..|+..+
T Consensus 59 l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~ 99 (211)
T PRK14160 59 LKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTA 99 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555666666555555556666666655443
No 322
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=50.54 E-value=3e+02 Score=28.29 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=6.7
Q ss_pred HHHHHHhHhhHHHHH
Q 027451 179 AVALRKQSEGFLFEY 193 (223)
Q Consensus 179 ~~aLKkQae~l~~EY 193 (223)
++..|++++++-++.
T Consensus 579 l~~a~~~~~~~i~~l 593 (782)
T PRK00409 579 IKEAKKEADEIIKEL 593 (782)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 323
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.35 E-value=99 Score=29.88 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 153 ~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
.+..++-+|+.+|..-+ ..+-=++.+.+...|+.+.++++.|++++
T Consensus 473 ~~~revrdlE~qI~~E~---------~k~~l~slEkl~~Dyqairqen~~L~~~i 518 (521)
T KOG1937|consen 473 ALKREVRDLESQIYVEE---------QKQYLKSLEKLHQDYQAIRQENDQLFSEI 518 (521)
T ss_pred hHHHHHHHHHHHHhHHH---------HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666555311 23444678888999999999999998876
No 324
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=50.30 E-value=2.5e+02 Score=28.74 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=19.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH
Q 027451 94 TLMGASLFLAFMIDRLHHYIRELRI 118 (223)
Q Consensus 94 YIsGF~LFL~lvI~R~~~li~~l~~ 118 (223)
.+.|+.-|+. +|+.++.+|+.-..
T Consensus 371 il~g~~~~~~-~id~~i~iir~~~~ 394 (738)
T TIGR01061 371 IVEGLIKAIS-IIDEIIKLIRSSED 394 (738)
T ss_pred HHHHHHHHHH-hhhhHhHHHHcCCC
Confidence 8999999998 89999998865443
No 325
>PRK05560 DNA gyrase subunit A; Validated
Probab=50.23 E-value=2.5e+02 Score=28.91 Aligned_cols=23 Identities=26% Similarity=0.160 Sum_probs=17.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 027451 94 TLMGASLFLAFMIDRLHHYIRELR 117 (223)
Q Consensus 94 YIsGF~LFL~lvI~R~~~li~~l~ 117 (223)
.+.|+..| ...|+.++.+|+.--
T Consensus 374 ~l~g~~~~-~~~~d~vI~iir~s~ 396 (805)
T PRK05560 374 ILEGLLIA-LDNIDEVIALIRASP 396 (805)
T ss_pred HHHHHHHH-HHhhHHHHHHHHcCC
Confidence 89999998 457777877776533
No 326
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=50.22 E-value=1.2e+02 Score=23.69 Aligned_cols=26 Identities=27% Similarity=0.183 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhhccccc
Q 027451 190 LFEYDRLLEENQNLRNQLQSLDWRLS 215 (223)
Q Consensus 190 ~~EYDrL~~e~~~l~~~l~~~~~~~~ 215 (223)
++|-..-..|+..|+..+..|.+|.+
T Consensus 41 tkEL~~Ak~e~~~Lr~dl~aG~~RL~ 66 (125)
T PF03245_consen 41 TKELADAKAEIDRLRADLAAGNKRLR 66 (125)
T ss_pred HHHHHHHHhhHHHHHHHHHcCCceEE
Confidence 34444555566779999999999886
No 327
>COG5244 NIP100 Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]
Probab=50.18 E-value=56 Score=31.85 Aligned_cols=58 Identities=28% Similarity=0.315 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------------hhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhcccc
Q 027451 154 LKLKLKDLESELETKSKEANA----------------AETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRL 214 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~----------------~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~~ 214 (223)
+.++...||..+..++.++.. -|.++.+||.|..+- -+.|.+||-++-+++..+||+.
T Consensus 524 L~E~N~RLKE~l~~~EN~l~~E~~~k~i~~~d~~r~~~E~Ni~~Lk~eL~~~---~~KL~e~~~~~~N~~~Nme~~~ 597 (669)
T COG5244 524 LNEENIRLKEVLVQKENMLTEETKIKIIIGRDLERKTLEENIKTLKVELNNK---NNKLKEENFNLVNRLKNMELKL 597 (669)
T ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhh---hhhhhhhcccccchhhhhHHHH
Confidence 445555666666655554322 244455555554433 3678888888888888888764
No 328
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=50.16 E-value=1.8e+02 Score=30.86 Aligned_cols=52 Identities=31% Similarity=0.376 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~ 205 (223)
+..|++.++.+++++..++++-+.++...+-+.+.+..+|..+..++.+++.
T Consensus 416 lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~ 467 (1200)
T KOG0964|consen 416 LQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQD 467 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888999999999998888877777766543
No 329
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=50.08 E-value=35 Score=24.78 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=9.2
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q 027451 149 DQMTTLKLKLKDLESELET 167 (223)
Q Consensus 149 ~~~~~l~~e~~~Lk~el~~ 167 (223)
+++..|+.++++|+.||..
T Consensus 7 eEn~~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 7 EENARLKEEIQKLEAELQQ 25 (76)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554443
No 330
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=49.89 E-value=2.5e+02 Score=27.73 Aligned_cols=19 Identities=11% Similarity=0.218 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 027451 112 YIRELRIRRKTMEAIKNQS 130 (223)
Q Consensus 112 li~~l~~~~~~~~al~kQa 130 (223)
+-.++-+++++.+.+++..
T Consensus 111 ~e~ei~kl~~e~~elr~~~ 129 (546)
T KOG0977|consen 111 LEIEITKLREELKELRKKL 129 (546)
T ss_pred HHHHHHHhHHHHHHHHHHH
Confidence 3334444555555554443
No 331
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=49.75 E-value=1.2e+02 Score=32.48 Aligned_cols=32 Identities=6% Similarity=-0.064 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 027451 151 MTTLKLKLKDLESELETKSKEANAAETNAVAL 182 (223)
Q Consensus 151 ~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aL 182 (223)
+++..++.++|++.++..-++++..+++++++
T Consensus 60 ~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~ 91 (1109)
T PRK10929 60 RKGSLERAKQYQQVIDNFPKLSAELRQQLNNE 91 (1109)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 33344445555555555555544444444443
No 332
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=49.68 E-value=2.6e+02 Score=28.64 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=5.6
Q ss_pred HHHHHHHhHhhH
Q 027451 178 NAVALRKQSEGF 189 (223)
Q Consensus 178 d~~aLKkQae~l 189 (223)
+.-.|+||..+|
T Consensus 105 ENislQKqvs~L 116 (717)
T PF09730_consen 105 ENISLQKQVSVL 116 (717)
T ss_pred HHHHHHHHHHHH
Confidence 344555554433
No 333
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=49.52 E-value=1.6e+02 Score=26.28 Aligned_cols=24 Identities=8% Similarity=-0.079 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhhccc
Q 027451 190 LFEYDRLLEENQNLRNQLQSLDWR 213 (223)
Q Consensus 190 ~~EYDrL~~e~~~l~~~l~~~~~~ 213 (223)
.....+...+.+..+..++....|
T Consensus 184 ~~~l~~~~~~l~~a~~~l~~~~I~ 207 (331)
T PRK03598 184 KASLAQAQAALAQAELNLQDTELI 207 (331)
T ss_pred HHHHHHHHHHHHHHHHHHhcCEEE
Confidence 333444444444455555443333
No 334
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=49.27 E-value=1.5e+02 Score=24.58 Aligned_cols=33 Identities=15% Similarity=0.328 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 027451 151 MTTLKLKLKDLESELETKSKEANAAETNAVALR 183 (223)
Q Consensus 151 ~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLK 183 (223)
|..++++++.|..+++..-+.|..++.++.++-
T Consensus 31 I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 31 IQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555554445555555555444
No 335
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=49.13 E-value=2.1e+02 Score=26.04 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=7.1
Q ss_pred HHHHHHHhHhhHHHHH
Q 027451 178 NAVALRKQSEGFLFEY 193 (223)
Q Consensus 178 d~~aLKkQae~l~~EY 193 (223)
..+-+++-++++..+|
T Consensus 201 ~~De~Rkeade~he~~ 216 (294)
T COG1340 201 EADELRKEADELHEEF 216 (294)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 336
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=48.97 E-value=2e+02 Score=25.81 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhh
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSL 210 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~ 210 (223)
.+.+++..+.|++....+++.+++++.-++.+.......--++-.+-.++.+.+..+
T Consensus 198 ~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~ 254 (269)
T PF05278_consen 198 KDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSI 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888888888888888888888766655555555555565555433
No 337
>PRK14144 heat shock protein GrpE; Provisional
Probab=48.94 E-value=86 Score=26.83 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhh
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEG 188 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~ 188 (223)
+.+++++++.++++.+..+.++.+|.+..|+..+.
T Consensus 50 l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~k 84 (199)
T PRK14144 50 LEEQLTLAEQKAHENWEKSVRALAELENVRRRMER 84 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777788877776544
No 338
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=48.94 E-value=1.3e+02 Score=27.48 Aligned_cols=11 Identities=27% Similarity=0.296 Sum_probs=4.1
Q ss_pred HHHHHHHhccc
Q 027451 121 KTMEAIKNQSR 131 (223)
Q Consensus 121 ~~~~al~kQa~ 131 (223)
++.+++..+++
T Consensus 6 ~~~~~~~~~~r 16 (378)
T TIGR01554 6 EQREEIVAEIR 16 (378)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 339
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=48.75 E-value=1.3e+02 Score=23.45 Aligned_cols=28 Identities=11% Similarity=0.194 Sum_probs=20.7
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 180 VALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 180 ~aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
-+-+.|.+.+.+.|-..+.+|+..|..-
T Consensus 84 r~~~~q~~~L~~~f~~~m~~fq~~Q~~~ 111 (151)
T cd00179 84 RIRKTQHSGLSKKFVEVMTEFNKAQRKY 111 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557888888888888888888776544
No 340
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=48.72 E-value=1.6e+02 Score=24.70 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q 027451 161 LESELETKSKEANAAETNAVALRKQSEGF 189 (223)
Q Consensus 161 Lk~el~~~~~el~~~~~d~~aLKkQae~l 189 (223)
++.++...+..+..+...++.|+.+...+
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l 124 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEEL 124 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433333333333333333333333
No 341
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=48.43 E-value=99 Score=22.15 Aligned_cols=58 Identities=17% Similarity=0.140 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 151 MTTLKLKLKDLESELETKSKEANA-AETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 151 ~~~l~~e~~~Lk~el~~~~~el~~-~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
++.+++|+=.||-.+--.+..+.+ ...+.+.+-++--.+.-+-..|..|.+..++.+.
T Consensus 9 i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~ 67 (75)
T PF07989_consen 9 IDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLK 67 (75)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444432 2333343334333344444444444444444443
No 342
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=48.40 E-value=1.3e+02 Score=26.71 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHhc
Q 027451 115 ELRIRRKTMEAIKNQ 129 (223)
Q Consensus 115 ~l~~~~~~~~al~kQ 129 (223)
++...+++++++..|
T Consensus 81 ~l~~a~a~l~~~~~~ 95 (334)
T TIGR00998 81 ALAKAEANLAALVRQ 95 (334)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455555444443
No 343
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=48.26 E-value=1.4e+02 Score=26.13 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHH
Q 027451 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLE 198 (223)
Q Consensus 156 ~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~ 198 (223)
+++++++..++....+...++++-..--.+....+..|.+-++
T Consensus 168 ~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~m~ 210 (258)
T cd07655 168 DQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMEDME 210 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 5677888888877777777777777666667777766765443
No 344
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=47.88 E-value=1.1e+02 Score=31.17 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027451 151 MTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (223)
Q Consensus 151 ~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~ 204 (223)
+..+++|...|.+.+++-...+...+.+..+++..+++++-+|.+|..+..+++
T Consensus 706 ~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k 759 (961)
T KOG4673|consen 706 LSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELK 759 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777766666666666777888888888888888877776544
No 345
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=47.69 E-value=86 Score=21.22 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHH
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLE 198 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~ 198 (223)
=+..|+..|+++++|+ .++++.||..+++
T Consensus 12 yI~~Lk~kLd~Kk~Ei-------------l~~ln~EY~kiLk 40 (56)
T PF08112_consen 12 YISILKSKLDEKKSEI-------------LSNLNMEYEKILK 40 (56)
T ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHH
Confidence 3566777777777755 4567777876654
No 346
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=47.51 E-value=1.7e+02 Score=27.52 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 027451 106 IDRLHHYIRELRIRRKTMEAIKNQ 129 (223)
Q Consensus 106 I~R~~~li~~l~~~~~~~~al~kQ 129 (223)
+.++..+=.+..++..+++.++.+
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~e 52 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAK 52 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666555555555555555543
No 347
>PF14282 FlxA: FlxA-like protein
Probab=47.50 E-value=1.2e+02 Score=22.93 Aligned_cols=53 Identities=19% Similarity=0.308 Sum_probs=28.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHhHhhHHHHHHHHHHHHHH
Q 027451 150 QMTTLKLKLKDLESELETKSKE----ANAAETNAVALRKQSEGFLFEYDRLLEENQN 202 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~el~~~~~e----l~~~~~d~~aLKkQae~l~~EYDrL~~e~~~ 202 (223)
.|+.|.+.++.|+.+|.+.... .+....-.+.|..|+..|+...-++..+-.+
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666666544331 1111234566777777777666666544433
No 348
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=47.49 E-value=1.5e+02 Score=25.60 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhHhhhcccc
Q 027451 190 LFEYDRLLEENQNLRNQLQSLDWRL 214 (223)
Q Consensus 190 ~~EYDrL~~e~~~l~~~l~~~~~~~ 214 (223)
.+++.++.++.-.+.--++..+.|+
T Consensus 87 ~~~f~a~~edi~rlE~~i~~lgaRw 111 (231)
T COG5493 87 EEEFRATKEDIKRLETIITGLGARW 111 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556666665555555555555544
No 349
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=47.48 E-value=99 Score=23.63 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHH
Q 027451 159 KDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRL 196 (223)
Q Consensus 159 ~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL 196 (223)
-++++.++...+.++..-..+=-|.|.-|-|++-|..|
T Consensus 81 ~emkkdleaankrve~q~ekiflmekkfe~lekkyesl 118 (122)
T PF05325_consen 81 IEMKKDLEAANKRVESQAEKIFLMEKKFETLEKKYESL 118 (122)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 33444444433333222222334455555555555544
No 350
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=47.44 E-value=89 Score=30.99 Aligned_cols=14 Identities=14% Similarity=0.330 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhHh
Q 027451 195 RLLEENQNLRNQLQ 208 (223)
Q Consensus 195 rL~~e~~~l~~~l~ 208 (223)
.+.+++++++.+++
T Consensus 602 ~~~~~~~~~~~~l~ 615 (638)
T PRK10636 602 ACLQQQASAKSGLE 615 (638)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555444
No 351
>PRK14143 heat shock protein GrpE; Provisional
Probab=47.42 E-value=54 Score=28.81 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=12.3
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 181 ALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 181 aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
.++++.+.+...|-|+..|.++.+++.
T Consensus 78 ~l~~e~~elkd~~lR~~AdfeN~RKR~ 104 (238)
T PRK14143 78 SLKQELEELNSQYMRIAADFDNFRKRT 104 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555444433
No 352
>PRK09458 pspB phage shock protein B; Provisional
Probab=47.40 E-value=16 Score=26.51 Aligned_cols=18 Identities=0% Similarity=0.106 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhcch
Q 027451 6 FTVMFSEMALIMVLLFKT 23 (223)
Q Consensus 6 f~~L~~Em~~~llLvlPl 23 (223)
+.+|.+-+++|+++|.|+
T Consensus 3 ~~fl~~PliiF~ifVaPi 20 (75)
T PRK09458 3 ALFLAIPLTIFVLFVAPI 20 (75)
T ss_pred chHHHHhHHHHHHHHHHH
Confidence 345555555566666555
No 353
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=47.39 E-value=72 Score=23.47 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=14.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q 027451 149 DQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (223)
Q Consensus 149 ~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l 189 (223)
+++++.++++.+++..++ ++++-|+++||+
T Consensus 8 ~eieK~k~Kiae~Q~rlK-----------~Le~qk~E~EN~ 37 (83)
T PF14193_consen 8 AEIEKTKEKIAELQARLK-----------ELEAQKTEAENL 37 (83)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 344444445555554444 345555556655
No 354
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=47.32 E-value=2.5e+02 Score=28.73 Aligned_cols=51 Identities=29% Similarity=0.354 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 158 ~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
.+.+..+.....-++++.+.|+..-|+|.+...++-.+|-+....|++.+.
T Consensus 501 kk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrnele 551 (786)
T PF05483_consen 501 KKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELE 551 (786)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555566666666666666666666555555555554
No 355
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=46.93 E-value=98 Score=21.62 Aligned_cols=32 Identities=28% Similarity=0.340 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q 027451 158 LKDLESELETKSKEANAAETNAVALRKQSEGF 189 (223)
Q Consensus 158 ~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l 189 (223)
+++++..+...+......+.++..+-+|.+.+
T Consensus 15 l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 15 LDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444443
No 356
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=46.92 E-value=1.9e+02 Score=28.66 Aligned_cols=46 Identities=22% Similarity=0.261 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~ 206 (223)
-.++++.|+. .+...+.+.+.|++|.+.+..+|+..+.+....|.+
T Consensus 326 ~~~~~~~el~----~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~ 371 (557)
T COG0497 326 YLDKIKEELA----QLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKK 371 (557)
T ss_pred HHHHHHHHHH----HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555 445556678899999999999998888777655443
No 357
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=46.92 E-value=1.9e+02 Score=24.89 Aligned_cols=55 Identities=20% Similarity=0.308 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
...+++.+-..|++.+.....++..+..|.++.+.++..-.....+|...+..|.
T Consensus 142 ~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD 196 (205)
T KOG1003|consen 142 YEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELD 196 (205)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4556666777777777777788888999999998888888778788777766664
No 358
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=46.90 E-value=2.8e+02 Score=26.96 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHH
Q 027451 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQN 202 (223)
Q Consensus 156 ~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~ 202 (223)
..+..|..-+...++.|...+++.++|.-|.+.....|-+|.+.|..
T Consensus 390 k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~ 436 (527)
T PF15066_consen 390 KTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMT 436 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34556777777777778778888999999999999999999999853
No 359
>PRK15396 murein lipoprotein; Provisional
Probab=46.73 E-value=1.1e+02 Score=22.22 Aligned_cols=10 Identities=20% Similarity=0.335 Sum_probs=4.0
Q ss_pred HHHHHHhHhh
Q 027451 179 AVALRKQSEG 188 (223)
Q Consensus 179 ~~aLKkQae~ 188 (223)
+.+++..+..
T Consensus 48 v~~~~~~~~~ 57 (78)
T PRK15396 48 VNAMRSDVQA 57 (78)
T ss_pred HHHHHHHHHH
Confidence 3444443333
No 360
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=46.72 E-value=93 Score=26.27 Aligned_cols=32 Identities=19% Similarity=0.491 Sum_probs=18.9
Q ss_pred hHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 177 TNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 177 ~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
.=...||+..+.|..|+..+.++...++.++.
T Consensus 25 rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~ 56 (204)
T PRK00373 25 RGHKLLKDKRDELIMEFFDILDEAKKLREEVE 56 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666655555444
No 361
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=46.60 E-value=1.6e+02 Score=29.63 Aligned_cols=47 Identities=17% Similarity=0.384 Sum_probs=35.0
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q 027451 143 EIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (223)
Q Consensus 143 ~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l 189 (223)
+-..+..+++.++.++..+.++|+..+.++...+...+-+..+..+.
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~ 126 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDS 126 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466678888888888888888888888888777777665555554
No 362
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=46.44 E-value=2.4e+02 Score=30.00 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
++.+.-..++..++++....++++.+|++++..++.-.+..++...+|..++
T Consensus 305 k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~ 356 (1072)
T KOG0979|consen 305 KVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQ 356 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444444455555666666677788888888877777777666666666554
No 363
>PF07254 DUF1434: Protein of unknown function (DUF1434); InterPro: IPR009883 This family consists of several hypothetical bacterial proteins of around 135 residues in length. Members of this family all appear to be Enterobacterial proteins. The function of this family is unknown.
Probab=46.37 E-value=69 Score=25.58 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 027451 6 FTVMFSEMALIMVLLFKTPLRKLLIMSLDRVKRGRGPVVVKTVAGTVLVMLISSVYNIMMIQKR 69 (223)
Q Consensus 6 f~~L~~Em~~~llLvlPlP~R~~~~~~l~~~~~~r~~~~~~~~~~~l~vlF~Dai~~~~k~~~~ 69 (223)
|.+++.=++++++|+.|+|.-.. .+-+.++.++.+|.++.-+++...
T Consensus 17 ~Sl~~~g~v~~~~Ll~PWP~~~~-----------------~~wl~Ll~lvvfe~irsqrri~~~ 63 (132)
T PF07254_consen 17 LSLLVHGAVVLLILLAPWPESYT-----------------PLWLLLLSLVVFECIRSQRRIRSR 63 (132)
T ss_pred HHHHHHHHHHHHHHHhccCcchH-----------------HHHHHHHHHHHHHHHHHHHhHHhC
Confidence 44444446667788899983221 111223445556677666666543
No 364
>PRK14153 heat shock protein GrpE; Provisional
Probab=46.28 E-value=50 Score=28.12 Aligned_cols=31 Identities=23% Similarity=0.227 Sum_probs=19.1
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
+++.+++|++.+...|-|+..|.++.++...
T Consensus 41 ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~ 71 (194)
T PRK14153 41 ETEKCREEIESLKEQLFRLAAEFDNFRKRTA 71 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666677777666655543
No 365
>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D. Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.
Probab=46.22 E-value=92 Score=26.44 Aligned_cols=36 Identities=17% Similarity=0.505 Sum_probs=23.7
Q ss_pred HHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 173 NAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 173 ~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
+.++.=...||+..+.|..|+..+.++...++..++
T Consensus 19 ~~a~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~ 54 (209)
T TIGR00309 19 KMAKRGYSLLKLKRDALIMEFRQILERAKDIKNKME 54 (209)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445677777777777777777777766666554
No 366
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=45.81 E-value=43 Score=23.12 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=18.1
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
+++.||.|+..|...-.+|-.||+-|+...
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456666666666666666666666665443
No 367
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=45.75 E-value=1.9e+02 Score=26.37 Aligned_cols=27 Identities=11% Similarity=0.130 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027451 97 GASLFLAFMIDRLHHYIRELRIRRKTM 123 (223)
Q Consensus 97 GF~LFL~lvI~R~~~li~~l~~~~~~~ 123 (223)
-|.=.-..++.|=++|+.++.+.+++.
T Consensus 190 ~F~~l~~cL~dREvaLl~EmdkVK~EA 216 (302)
T PF07139_consen 190 TFAELQSCLMDREVALLAEMDKVKAEA 216 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556678999999999999887764
No 368
>PRK14146 heat shock protein GrpE; Provisional
Probab=45.74 E-value=90 Score=26.95 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhh
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEG 188 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~ 188 (223)
+..++++++.++++.+..+.++.+|.+..|+..+.
T Consensus 59 l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~k 93 (215)
T PRK14146 59 LQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQ 93 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666777777777765543
No 369
>PRK14141 heat shock protein GrpE; Provisional
Probab=45.53 E-value=79 Score=27.23 Aligned_cols=35 Identities=17% Similarity=0.110 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhh
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEG 188 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~ 188 (223)
+.++++.|+.++++.+..+.++.+|.+.+||..+.
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~k 70 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEMENLRKRTQR 70 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777788888888876654
No 370
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=45.25 E-value=4.2e+02 Score=30.12 Aligned_cols=107 Identities=9% Similarity=0.188 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc----cccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027451 102 LAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDG----KAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAET 177 (223)
Q Consensus 102 L~lvI~R~~~li~~l~~~~~~~~al~kQa~~~~~~----~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~ 177 (223)
..-+=.++-+...++..++..+-.+.++..+.... ..+..+.......++..+..+++.+...+......+.....
T Consensus 953 ~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~ 1032 (1822)
T KOG4674|consen 953 RLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQN 1032 (1822)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555556665555555544333311 01112223344455566666666666666666666666666
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
|++...+++.-.+..|++=+-+|..+...+.
T Consensus 1033 dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~ 1063 (1822)
T KOG4674|consen 1033 DLKTETEQLRKAQSKYESELVQHADLTQKLI 1063 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777767777778888877777765544443
No 371
>PRK15396 murein lipoprotein; Provisional
Probab=44.97 E-value=1.2e+02 Score=22.07 Aligned_cols=16 Identities=13% Similarity=0.424 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 027451 157 KLKDLESELETKSKEA 172 (223)
Q Consensus 157 e~~~Lk~el~~~~~el 172 (223)
++..++..+...+.|.
T Consensus 47 dv~~~~~~~~~a~~eA 62 (78)
T PRK15396 47 DVNAMRSDVQAAKDDA 62 (78)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 372
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=44.96 E-value=1.1e+02 Score=21.60 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 027451 155 KLKLKDLESELE 166 (223)
Q Consensus 155 ~~e~~~Lk~el~ 166 (223)
..+.++|+.|+.
T Consensus 44 ~~en~~L~~ei~ 55 (85)
T TIGR02209 44 QKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 373
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=44.84 E-value=3.4e+02 Score=27.72 Aligned_cols=46 Identities=17% Similarity=0.168 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027451 160 DLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (223)
Q Consensus 160 ~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~ 205 (223)
+..+.++..+........+++.++.+...++.|-.+|..+....++
T Consensus 577 k~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~ 622 (698)
T KOG0978|consen 577 KSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKK 622 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333333333333444445666666666666666666666655443
No 374
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.50 E-value=3.4e+02 Score=29.46 Aligned_cols=39 Identities=23% Similarity=0.231 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHH
Q 027451 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRL 196 (223)
Q Consensus 158 ~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL 196 (223)
+++|+.+++....+++.++.+++-++...+.++.+|+++
T Consensus 890 L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1311)
T TIGR00606 890 LVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEEL 928 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 333444444333333333334444444444444444443
No 375
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=44.48 E-value=55 Score=24.89 Aligned_cols=8 Identities=13% Similarity=0.048 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 027451 156 LKLKDLES 163 (223)
Q Consensus 156 ~e~~~Lk~ 163 (223)
+++++|+.
T Consensus 48 ~~n~~L~~ 55 (105)
T PRK00888 48 ARNDQLFA 55 (105)
T ss_pred HHHHHHHH
Confidence 33333333
No 376
>PRK02793 phi X174 lysis protein; Provisional
Probab=44.32 E-value=1.1e+02 Score=21.60 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=15.4
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
-++.|-+..-..+++-|+|......+.+++.
T Consensus 23 tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 53 (72)
T PRK02793 23 TIEELNVTVTAHEMEMAKLRDHLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555555554
No 377
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=44.25 E-value=3.1e+02 Score=26.70 Aligned_cols=35 Identities=14% Similarity=0.175 Sum_probs=25.7
Q ss_pred HHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027451 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (223)
Q Consensus 171 el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~ 205 (223)
.+...+.+++.|+++.+.+.++|..+..+..+.+.
T Consensus 340 ~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~ 374 (563)
T TIGR00634 340 QLDDSDESLEALEEEVDKLEEELDKAAVALSLIRR 374 (563)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667889999999999999887777655543
No 378
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=44.05 E-value=1.3e+02 Score=28.39 Aligned_cols=23 Identities=22% Similarity=0.078 Sum_probs=9.3
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHH
Q 027451 180 VALRKQSEGFLFEYDRLLEENQN 202 (223)
Q Consensus 180 ~aLKkQae~l~~EYDrL~~e~~~ 202 (223)
+.++.++..+.++-..+.++...
T Consensus 69 ~~l~~~~~~l~~~~~~~~~~~~~ 91 (425)
T PRK05431 69 EALIAEVKELKEEIKALEAELDE 91 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333
No 379
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=44.03 E-value=1.7e+02 Score=25.13 Aligned_cols=52 Identities=23% Similarity=0.277 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhh
Q 027451 159 KDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSL 210 (223)
Q Consensus 159 ~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~ 210 (223)
..|+..+..+..+++.-+.++...+..++.+......+-.|...|+..+...
T Consensus 55 ~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 55 QELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 3344444444444444444444444445555445555555555566555543
No 380
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=44.03 E-value=1.9e+02 Score=25.63 Aligned_cols=88 Identities=10% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHH
Q 027451 111 HYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFL 190 (223)
Q Consensus 111 ~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~ 190 (223)
..+.++-+-+..++..-+.++++.. .....+..+..-+.++++++..+..+..+...+.++-..--.+..+.+
T Consensus 124 ~~~~~leksKk~Y~~acke~E~A~~-------k~~ka~~d~~~tk~~~eK~k~~~~~~~q~~e~aKn~Y~~~L~~~N~~q 196 (252)
T cd07675 124 MCWKQMDNSKKKFERECREAEKAQQ-------SYERLDNDTNATKSDVEKAKQQLNLRTHMADESKNEYAAQLQNFNGEQ 196 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HH-HHHHHHHH-HHHHH
Q 027451 191 FE-YDRLLEEN-QNLRN 205 (223)
Q Consensus 191 ~E-YDrL~~e~-~~l~~ 205 (223)
.. |...+++. +.+|+
T Consensus 197 ~k~Y~e~mP~vfd~lQ~ 213 (252)
T cd07675 197 HKHFYIVIPQIYKQLQE 213 (252)
T ss_pred HhHHHHHHHHHHHHHHH
No 381
>PF15294 Leu_zip: Leucine zipper
Probab=43.79 E-value=1.1e+02 Score=27.70 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=21.1
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q 027451 146 ALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (223)
Q Consensus 146 ~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l 189 (223)
-+..+|.++.+|+++|+..+...++..-.+-.+...++.|...+
T Consensus 129 ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~l 172 (278)
T PF15294_consen 129 LLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKEL 172 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666555555443333333333333333333
No 382
>PRK14158 heat shock protein GrpE; Provisional
Probab=43.73 E-value=70 Score=27.20 Aligned_cols=8 Identities=38% Similarity=0.800 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 027451 157 KLKDLESE 164 (223)
Q Consensus 157 e~~~Lk~e 164 (223)
+++.++.+
T Consensus 41 ~~~~le~~ 48 (194)
T PRK14158 41 RIKELEEA 48 (194)
T ss_pred HHHHHHHH
Confidence 33334433
No 383
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=43.36 E-value=2.2e+02 Score=24.59 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=20.7
Q ss_pred hhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 027451 175 AETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (223)
Q Consensus 175 ~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~ 206 (223)
++.++...-.+++.-..-||.+++|+++++..
T Consensus 116 ~~k~~~~a~~~leKAK~~Y~~~c~e~Ekar~~ 147 (234)
T cd07652 116 AEKKVQDAEAAAEKAKARYDSLADDLERVKTG 147 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34445555555555666789999988877653
No 384
>PLN03188 kinesin-12 family protein; Provisional
Probab=43.26 E-value=4.2e+02 Score=29.05 Aligned_cols=18 Identities=22% Similarity=0.102 Sum_probs=9.5
Q ss_pred hhHHHHHHHhHhhHHHHH
Q 027451 176 ETNAVALRKQSEGFLFEY 193 (223)
Q Consensus 176 ~~d~~aLKkQae~l~~EY 193 (223)
+.+.+-++||.+.|.+-|
T Consensus 1224 eqe~~~~~k~~~klkrkh 1241 (1320)
T PLN03188 1224 EQEAAEAYKQIDKLKRKH 1241 (1320)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455555555555555
No 385
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=43.05 E-value=1.7e+02 Score=28.46 Aligned_cols=9 Identities=44% Similarity=0.435 Sum_probs=3.6
Q ss_pred HHHHHhHhh
Q 027451 180 VALRKQSEG 188 (223)
Q Consensus 180 ~aLKkQae~ 188 (223)
..||+++|.
T Consensus 484 r~Lq~~iE~ 492 (507)
T PF05600_consen 484 RELQKQIEA 492 (507)
T ss_pred HHHHHHHHH
Confidence 334444433
No 386
>PRK00736 hypothetical protein; Provisional
Probab=42.87 E-value=1.2e+02 Score=21.30 Aligned_cols=30 Identities=10% Similarity=0.058 Sum_probs=13.8
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
++.|-+..-..+++-|+|......+.+++.
T Consensus 21 ie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 21 IEELSDQLAEQWKTVEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555544445544444
No 387
>PF07136 DUF1385: Protein of unknown function (DUF1385); InterPro: IPR010787 This family contains a number of hypothetical bacterial proteins of unknown function approximately 300 residues in length. Some family members are predicted to be metal-dependent.
Probab=42.83 E-value=2e+02 Score=25.34 Aligned_cols=22 Identities=5% Similarity=0.021 Sum_probs=15.7
Q ss_pred HHHHHHHHhHHHHHHhhhhccc
Q 027451 51 TVLVMLISSVYNIMMIQKRWID 72 (223)
Q Consensus 51 ~l~vlF~Dai~~~~k~~~~~~~ 72 (223)
++++-+..-++|+.+||..+|.
T Consensus 95 i~~is~~~dI~Rvf~YHGAEHK 116 (236)
T PF07136_consen 95 IWLISRMKDIKRVFQYHGAEHK 116 (236)
T ss_pred HHHHHhhHHHHHHHHHcchhhh
Confidence 3445566778999999987654
No 388
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=42.69 E-value=1.7e+02 Score=28.16 Aligned_cols=40 Identities=15% Similarity=0.088 Sum_probs=25.9
Q ss_pred hHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhcccccC
Q 027451 177 TNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSH 216 (223)
Q Consensus 177 ~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~~~~ 216 (223)
.+.+.+.++...|...+..|....+.+.......+...+.
T Consensus 200 ~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~~~~ 239 (475)
T PF10359_consen 200 SDIEELERHISSLKERIEFLENMLEDLEDSESSSDQSSSS 239 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Confidence 4566777777777777777766666666666555554443
No 389
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=42.42 E-value=2.2e+02 Score=24.41 Aligned_cols=27 Identities=11% Similarity=0.238 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Q 027451 107 DRLHHYIRELRIRRKTMEAIKNQSRGF 133 (223)
Q Consensus 107 ~R~~~li~~l~~~~~~~~al~kQa~~~ 133 (223)
......+.+.....+..+.+.+....+
T Consensus 24 ~~al~~L~~~~~~~~~~~~~~~~i~~a 50 (240)
T PF12795_consen 24 QQALSFLDEIKKQKKRAAEYQKQIDQA 50 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555555555544443
No 390
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=42.36 E-value=30 Score=33.58 Aligned_cols=10 Identities=40% Similarity=0.717 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 027451 157 KLKDLESELE 166 (223)
Q Consensus 157 e~~~Lk~el~ 166 (223)
++++|++||+
T Consensus 32 kie~L~kql~ 41 (489)
T PF11853_consen 32 KIEALKKQLE 41 (489)
T ss_pred HHHHHHHHHH
Confidence 3444444333
No 391
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=42.33 E-value=72 Score=28.96 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=13.4
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
.+++.||.|-+|+-|-|+ .-|++-+++++.
T Consensus 25 ~~~~~k~~e~~qkl~sr~-~~~~ekke~i~r 54 (359)
T KOG4398|consen 25 SEGLLKTKEKNQKLYSRA-QRHQEKKEKIQR 54 (359)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 445555555555555444 333333333333
No 392
>PRK11677 hypothetical protein; Provisional
Probab=42.30 E-value=1.4e+02 Score=23.84 Aligned_cols=13 Identities=31% Similarity=0.370 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 027451 154 LKLKLKDLESELE 166 (223)
Q Consensus 154 l~~e~~~Lk~el~ 166 (223)
.+.++++++.++.
T Consensus 41 ~k~ele~YkqeV~ 53 (134)
T PRK11677 41 NKAELEEYRQELV 53 (134)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 393
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=42.18 E-value=2.4e+02 Score=24.87 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027451 100 LFLAFMIDRLHHYIRELRIRRKTMEAI 126 (223)
Q Consensus 100 LFL~lvI~R~~~li~~l~~~~~~~~al 126 (223)
++++++|-=+++-..++.-.+.+.+.-
T Consensus 87 ~~lAvliaivIs~pl~l~iF~~eI~~~ 113 (301)
T PF14362_consen 87 LLLAVLIAIVISEPLELKIFEKEIDQK 113 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666554433
No 394
>COG1422 Predicted membrane protein [Function unknown]
Probab=42.16 E-value=1.3e+02 Score=25.75 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 027451 103 AFMIDRLHHYIRELRIRRKTMEAIKNQSRGF 133 (223)
Q Consensus 103 ~lvI~R~~~li~~l~~~~~~~~al~kQa~~~ 133 (223)
+.++.-..+++..+..-++.++.+++.++..
T Consensus 54 avi~gl~~~i~~~~liD~ekm~~~qk~m~ef 84 (201)
T COG1422 54 AVITGLYITILQKLLIDQEKMKELQKMMKEF 84 (201)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3344444556666666667666677655433
No 395
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=42.10 E-value=53 Score=22.76 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=26.9
Q ss_pred HhhhHHHHHHHh----HhhHHHHHHHHHHHHHHHHHhHhhhc
Q 027451 174 AAETNAVALRKQ----SEGFLFEYDRLLEENQNLRNQLQSLD 211 (223)
Q Consensus 174 ~~~~d~~aLKkQ----ae~l~~EYDrL~~e~~~l~~~l~~~~ 211 (223)
.++.++.=|+.| ..||..|-.+|..++..|+-++.+..
T Consensus 7 s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~~kL~m~~ 48 (60)
T PF14916_consen 7 SLEKSILFLQQEHAQTLKGLHAEIERLQKRNKDLTFKLIMKQ 48 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeecC
Confidence 344455556555 56788899999988888888876443
No 396
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=42.06 E-value=1.2e+02 Score=25.65 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhh
Q 027451 156 LKLKDLESELETKSKEANAAETNAVALRKQSEG 188 (223)
Q Consensus 156 ~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~ 188 (223)
+++++|+.++++.+..+.++.++.+.++++.+.
T Consensus 43 ~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~r 75 (193)
T COG0576 43 QEIAELEAQLEELKDKYLRAQAEFENLRKRTER 75 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888887777777777788887776543
No 397
>PRK02119 hypothetical protein; Provisional
Probab=42.04 E-value=1.2e+02 Score=21.46 Aligned_cols=36 Identities=17% Similarity=0.069 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l 189 (223)
|...+.-.+.-++++.+.+.....+++.|+.|...+
T Consensus 14 LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 14 LEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555444455566666665555
No 398
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=41.90 E-value=8.5 Score=38.67 Aligned_cols=58 Identities=29% Similarity=0.399 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
++..++.++.+|+.++.....+....+-+...|+.+.+.+..|.+++..+.+.|+...
T Consensus 364 qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~ 421 (713)
T PF05622_consen 364 QLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETN 421 (713)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666655555555555566778888888888888888888777776544
No 399
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=41.83 E-value=2e+02 Score=25.84 Aligned_cols=91 Identities=5% Similarity=-0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHH
Q 027451 114 RELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEY 193 (223)
Q Consensus 114 ~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EY 193 (223)
.++...+++++++..+.+.... ..+....+++....+++..+.+++..++++.+ ...|-++----..+|
T Consensus 86 ~~l~~a~a~l~~a~a~l~~~~~-------~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R----~~~L~~~g~vS~~~~ 154 (346)
T PRK10476 86 LTVAQAQADLALADAQIMTTQR-------SVDAERSNAASANEQVERARANAKLATRTLER----LEPLLAKGYVSAQQV 154 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCCCcCHHHH
Q ss_pred HHHHHHHHHHHHhHhhhccccc
Q 027451 194 DRLLEENQNLRNQLQSLDWRLS 215 (223)
Q Consensus 194 DrL~~e~~~l~~~l~~~~~~~~ 215 (223)
|+...+++..+.+++....+..
T Consensus 155 ~~a~~~~~~a~~~l~~a~~~~~ 176 (346)
T PRK10476 155 DQARTAQRDAEVSLNQALLQAQ 176 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 400
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=41.78 E-value=2.9e+02 Score=25.60 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=11.6
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHH
Q 027451 178 NAVALRKQSEGFLFEYDRLLEENQN 202 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~~~ 202 (223)
+...|+.+.+....-|+.+...+++
T Consensus 343 ~~~~L~r~~~~~~~~y~~ll~r~~e 367 (444)
T TIGR03017 343 EMSVLQRDVENAQRAYDAAMQRYTQ 367 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555544443
No 401
>PRK00295 hypothetical protein; Provisional
Probab=41.71 E-value=1.2e+02 Score=21.20 Aligned_cols=36 Identities=8% Similarity=0.029 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l 189 (223)
|...+.-.+.-++...+.+.....+++.|+.|...+
T Consensus 10 LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 10 LESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444455567777776665
No 402
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=41.62 E-value=54 Score=22.57 Aligned_cols=27 Identities=33% Similarity=0.430 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 027451 155 KLKLKDLESELETKSKEANAAETNAVA 181 (223)
Q Consensus 155 ~~e~~~Lk~el~~~~~el~~~~~d~~a 181 (223)
.+.++.|+++|...+.++..+|+....
T Consensus 31 EqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 31 EQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777776666655543
No 403
>PRK13553 fumarate reductase cytochrome b-556 subunit; Provisional
Probab=41.48 E-value=2.6e+02 Score=24.95 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHH-HHhhcc-hhHHHHHHHHHHHHHH-HHhHHHHHHh
Q 027451 5 LFTVMFSEMALIMVLLFKTPLRKLLIMSLD-RVKRGR-GPVVVKTVAGTVLVML-ISSVYNIMMI 66 (223)
Q Consensus 5 vf~~L~~Em~~~llLvlPlP~R~~~~~~l~-~~~~~r-~~~~~~~~~~~l~vlF-~Dai~~~~k~ 66 (223)
+..||..-|.+....++--..=-.+..++. .++.+. .+.+..+.+.++++.| +-++.-++|.
T Consensus 35 LglFl~~Hm~~~ssil~G~~afn~va~f~E~~~~~~~g~p~~~sl~~~~I~l~~l~Ha~lalrk~ 99 (258)
T PRK13553 35 LGLFMWAHMFFVSTILISDDAMYKVAKFFEGSFFFKAGEPALVSFVAAGVILIFVVHAFLAMRKF 99 (258)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHhhCccccCCcchhHHHHHHHHHHHHHHHHHHHHhhC
Confidence 445566666555544443222233445555 333333 3555555555555444 5666666654
No 404
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=41.28 E-value=1.5e+02 Score=27.67 Aligned_cols=22 Identities=27% Similarity=0.613 Sum_probs=9.3
Q ss_pred HHhHHHhHHHHHHHHHHHHHHH
Q 027451 145 KALEDQMTTLKLKLKDLESELE 166 (223)
Q Consensus 145 ~~~~~~~~~l~~e~~~Lk~el~ 166 (223)
+.+.++++.+.+++++|+..++
T Consensus 245 ~~l~~~~~~~~~~i~~l~~~l~ 266 (406)
T PF02388_consen 245 ESLQEKLEKLEKEIEKLEEKLE 266 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444443
No 405
>PRK11415 hypothetical protein; Provisional
Probab=40.99 E-value=58 Score=23.20 Aligned_cols=30 Identities=7% Similarity=0.063 Sum_probs=16.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHhHhhhccccc
Q 027451 186 SEGFLFEYDRLLEENQNLRNQLQSLDWRLS 215 (223)
Q Consensus 186 ae~l~~EYDrL~~e~~~l~~~l~~~~~~~~ 215 (223)
..+...+|.+|.++|+.|..++...+.+-+
T Consensus 12 Lk~~D~~F~~L~~~h~~Ld~~I~~lE~~~~ 41 (74)
T PRK11415 12 LKNENPRFMSLFDKHNKLDHEIARKEGSDG 41 (74)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 334445566666666666666655555444
No 406
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=40.95 E-value=2.3e+02 Score=24.86 Aligned_cols=88 Identities=7% Similarity=0.048 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q 027451 106 IDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQ 185 (223)
Q Consensus 106 I~R~~~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQ 185 (223)
-.-.-..+.++.+.+..+..+-+.++++..... ++. .....-+.++++.+.....+..+...+.++-..--.+
T Consensus 120 qk~~~~~~~~lekaKk~Y~~acke~E~A~~~~~------ka~-~d~~~sk~~~eK~k~~~~~~~~~~e~aKn~Y~~~l~~ 192 (253)
T cd07676 120 QQHIETCWKQLESSKRRFERDCKEADRAQQYFE------KMD-ADINVTKADVEKARQQAQIRHQMAEDSKAEYSSYLQK 192 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcc-ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555444432100 000 0000123466777777877777777777664444444
Q ss_pred HhhHH-HHHHHHHHHH
Q 027451 186 SEGFL-FEYDRLLEEN 200 (223)
Q Consensus 186 ae~l~-~EYDrL~~e~ 200 (223)
....+ ..|...+++.
T Consensus 193 ~N~~q~~~Y~e~mp~v 208 (253)
T cd07676 193 FNKEQHEHYYTHIPNI 208 (253)
T ss_pred HHHHhhhhHHHHHHHH
Confidence 45454 6676665554
No 407
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=40.94 E-value=1.4e+02 Score=22.82 Aligned_cols=21 Identities=19% Similarity=0.053 Sum_probs=10.8
Q ss_pred HHHHhhhHHHHHHHhHhhHHH
Q 027451 171 EANAAETNAVALRKQSEGFLF 191 (223)
Q Consensus 171 el~~~~~d~~aLKkQae~l~~ 191 (223)
++--.|+..++|.|..|.+++
T Consensus 100 kiflmekkfe~lekkyeslnk 120 (122)
T PF05325_consen 100 KIFLMEKKFETLEKKYESLNK 120 (122)
T ss_pred hhhhHHHHHHHHHHHHHHHhc
Confidence 333334445666666665543
No 408
>PLN02320 seryl-tRNA synthetase
Probab=40.86 E-value=1.2e+02 Score=29.63 Aligned_cols=22 Identities=9% Similarity=0.252 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027451 106 IDRLHHYIRELRIRRKTMEAIK 127 (223)
Q Consensus 106 I~R~~~li~~l~~~~~~~~al~ 127 (223)
+.++..+=.+...+..+++.++
T Consensus 92 vd~l~~ld~~~r~~~~~~~~lr 113 (502)
T PLN02320 92 LELVLELYENMLALQKEVERLR 113 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 409
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=40.62 E-value=64 Score=28.82 Aligned_cols=17 Identities=41% Similarity=0.472 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhHhh
Q 027451 193 YDRLLEENQNLRNQLQS 209 (223)
Q Consensus 193 YDrL~~e~~~l~~~l~~ 209 (223)
+..+..|+++|++-|..
T Consensus 93 ~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 93 TQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 33466777777776654
No 410
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.41 E-value=45 Score=31.04 Aligned_cols=12 Identities=25% Similarity=0.703 Sum_probs=8.1
Q ss_pred HHHHHHHhcch-h
Q 027451 13 MALIMVLLFKT-P 24 (223)
Q Consensus 13 m~~~llLvlPl-P 24 (223)
.+++.+-|+|+ |
T Consensus 199 l~tlaivLFPLWP 211 (372)
T KOG2927|consen 199 LVTLAIVLFPLWP 211 (372)
T ss_pred HHHHHHHhcccCc
Confidence 45556677887 7
No 411
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=40.31 E-value=1.5e+02 Score=29.35 Aligned_cols=54 Identities=20% Similarity=0.235 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027451 151 MTTLKLKLKDLESELETKSKEANAAE------TNAVALRKQSEGFLFEYDRLLEENQNLR 204 (223)
Q Consensus 151 ~~~l~~e~~~Lk~el~~~~~el~~~~------~d~~aLKkQae~l~~EYDrL~~e~~~l~ 204 (223)
++.+.+++++|+.++++.+.++...+ ..+..+-++.+.+..+.+++.++-+++.
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 629 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWEELE 629 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666655555443221 0233444444444444444444444444
No 412
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=40.27 E-value=1.8e+02 Score=27.59 Aligned_cols=66 Identities=18% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHH
Q 027451 114 RELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEY 193 (223)
Q Consensus 114 ~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EY 193 (223)
++-+..++..++.+.|++.+. -..-..+|-..+++|-+.|.+|++++++ +++.++.|..--+...
T Consensus 322 kek~~KEAqareaklqaec~r--------Q~qlaLEEKaaLrkerd~L~keLeekkr-------eleql~~q~~v~~saL 386 (442)
T PF06637_consen 322 KEKAGKEAQAREAKLQAECAR--------QTQLALEEKAALRKERDSLAKELEEKKR-------ELEQLKMQLAVKTSAL 386 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhHH
Q ss_pred H
Q 027451 194 D 194 (223)
Q Consensus 194 D 194 (223)
|
T Consensus 387 d 387 (442)
T PF06637_consen 387 D 387 (442)
T ss_pred H
No 413
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=40.17 E-value=1.2e+02 Score=30.10 Aligned_cols=30 Identities=7% Similarity=0.099 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027451 100 LFLAFMIDRLHHYIRELRIRRKTMEAIKNQ 129 (223)
Q Consensus 100 LFL~lvI~R~~~li~~l~~~~~~~~al~kQ 129 (223)
-.+.=+..++-.+..+...++++.+.+.++
T Consensus 93 ~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~ 122 (646)
T PRK05771 93 EELEKIEKEIKELEEEISELENEIKELEQE 122 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777776665544
No 414
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=40.14 E-value=72 Score=22.21 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=12.5
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHH
Q 027451 147 LEDQMTTLKLKLKDLESELETKS 169 (223)
Q Consensus 147 ~~~~~~~l~~e~~~Lk~el~~~~ 169 (223)
+.+-|+-+..|++.|+.|+..++
T Consensus 30 l~eRIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 30 LEERIALLQAEIERLKAELAKKK 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444455566666666665444
No 415
>PRK14147 heat shock protein GrpE; Provisional
Probab=40.09 E-value=63 Score=26.86 Aligned_cols=9 Identities=11% Similarity=0.268 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 027451 154 LKLKLKDLE 162 (223)
Q Consensus 154 l~~e~~~Lk 162 (223)
+.+++++++
T Consensus 30 l~~e~~elk 38 (172)
T PRK14147 30 LRSEIALVK 38 (172)
T ss_pred HHHHHHHHH
Confidence 333333333
No 416
>PRK00846 hypothetical protein; Provisional
Probab=40.03 E-value=1.4e+02 Score=21.60 Aligned_cols=48 Identities=15% Similarity=0.041 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhc
Q 027451 164 ELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLD 211 (223)
Q Consensus 164 el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~ 211 (223)
.|..++..+.-.+.-++.|-...-..++.-|+|......+.+++...+
T Consensus 14 Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 14 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333444444455677777777777777888777777777776554
No 417
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=39.96 E-value=1.3e+02 Score=25.44 Aligned_cols=31 Identities=19% Similarity=0.180 Sum_probs=20.0
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
=...|+..-++|..|+..+.+++..++..++
T Consensus 25 g~~lLk~KR~~Li~e~~~~~~~~~~lr~~~~ 55 (201)
T PRK02195 25 YLPTLKLKKAQLQAEVRRAKAEAAELEQEYQ 55 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666777666666666665554
No 418
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=39.83 E-value=55 Score=29.07 Aligned_cols=20 Identities=35% Similarity=0.263 Sum_probs=11.5
Q ss_pred HHHHHHHhHhhHHHHHHHHH
Q 027451 178 NAVALRKQSEGFLFEYDRLL 197 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~ 197 (223)
+.++|+.|.+.+.+|-+.+.
T Consensus 230 en~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 230 ENEALRTQVEQLKKELATLR 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666655555443
No 419
>COG1422 Predicted membrane protein [Function unknown]
Probab=39.80 E-value=2.2e+02 Score=24.41 Aligned_cols=15 Identities=13% Similarity=0.366 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhc
Q 027451 115 ELRIRRKTMEAIKNQ 129 (223)
Q Consensus 115 ~l~~~~~~~~al~kQ 129 (223)
++.++++..++.++.
T Consensus 73 km~~~qk~m~efq~e 87 (201)
T COG1422 73 KMKELQKMMKEFQKE 87 (201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 420
>PRK00736 hypothetical protein; Provisional
Probab=39.51 E-value=1.3e+02 Score=21.00 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l 189 (223)
|..++.-.+.-++++.+.+.....+++.|++|...+
T Consensus 10 LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 10 LEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445544455545555667777776655
No 421
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=39.47 E-value=72 Score=23.68 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q 027451 160 DLESELETKSKEANAAETNAVALRKQSEGF 189 (223)
Q Consensus 160 ~Lk~el~~~~~el~~~~~d~~aLKkQae~l 189 (223)
+|+.+++..++++..++.....|+-|...+
T Consensus 5 ~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l 34 (86)
T PF12958_consen 5 ELQAEIEKAEKKLEQAEHKIKQLENRKKKL 34 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444
No 422
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=39.46 E-value=1.3e+02 Score=25.65 Aligned_cols=38 Identities=24% Similarity=0.398 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHhHhhHHH
Q 027451 154 LKLKLKDLESELETKSKEANA----AETNAVALRKQSEGFLF 191 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~----~~~d~~aLKkQae~l~~ 191 (223)
|+.|+.+|+.++...+.+... ...+..-+|.|.|+|.+
T Consensus 101 LkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~ 142 (195)
T PF12761_consen 101 LKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLD 142 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHH
Confidence 445555555555555544433 12234556888888743
No 423
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=39.32 E-value=91 Score=27.84 Aligned_cols=19 Identities=0% Similarity=0.095 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027451 109 LHHYIRELRIRRKTMEAIK 127 (223)
Q Consensus 109 ~~~li~~l~~~~~~~~al~ 127 (223)
....+..+..++++.+.|+
T Consensus 61 ~~~~~~~~~~l~~EN~~Lr 79 (283)
T TIGR00219 61 ISENLKDVNNLEYENYKLR 79 (283)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333
No 424
>PHA00476 hypothetical protein
Probab=39.31 E-value=1.4e+02 Score=23.02 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcchh-HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhHHHH
Q 027451 11 SEMALIMVLLFKTP-LRKLLIMSLDRVKRGRGPVVVKTVAGTVLVMLISSVYNI 63 (223)
Q Consensus 11 ~Em~~~llLvlPlP-~R~~~~~~l~~~~~~r~~~~~~~~~~~l~vlF~Dai~~~ 63 (223)
+-.+-.++|.+|+. .-+.++..++.+ ++..++..+.+..+|.|..-
T Consensus 16 ~~cAn~lILSlp~sVtSK~icl~lssf-------vfsSvallvil~~L~TW~TT 62 (110)
T PHA00476 16 VLCANYLILSLPLSVTSKGICLTLSSF-------VFSSVALLVILVLLGTWSTT 62 (110)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhccccc
Confidence 34455678888885 445555555443 44444555555566887643
No 425
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=39.28 E-value=3.7e+02 Score=26.72 Aligned_cols=92 Identities=12% Similarity=0.150 Sum_probs=46.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHH---HHHH
Q 027451 94 TLMGASLFLAFMIDRLHHYIRE--LRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESE---LETK 168 (223)
Q Consensus 94 YIsGF~LFL~lvI~R~~~li~~--l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~e---l~~~ 168 (223)
|++|++= |..+|-+++.+..+ |-++..++.+...+.++++.....-+ +.+.+-+..-.+--+.|+.. ....
T Consensus 78 ~ls~~a~-lT~LLG~l~qL~~~~Sl~~l~s~l~~~na~~~ga~~~~~~lS---~~ledaL~aaq~~ad~l~q~~~~~~~A 153 (593)
T PRK15374 78 KLSSEGQ-LTLLLGKLMTLLGDVSLSQLESRLAVWQAMIESQKEMGIQVS---KEFQTALGEAQEATDLYEASIKKTDTA 153 (593)
T ss_pred cccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 5566542 45566777777653 44555555555555444443211111 12222222222233445555 4555
Q ss_pred HHHHHHhhhHHHHHHHhHhhH
Q 027451 169 SKEANAAETNAVALRKQSEGF 189 (223)
Q Consensus 169 ~~el~~~~~d~~aLKkQae~l 189 (223)
+..+..++..+.+++.|++++
T Consensus 154 q~~l~~aq~~l~~lq~~a~~~ 174 (593)
T PRK15374 154 KSVYDAAEKKLTQAQNKLQSL 174 (593)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 556666667777777776665
No 426
>PRK14157 heat shock protein GrpE; Provisional
Probab=39.18 E-value=1.2e+02 Score=26.58 Aligned_cols=36 Identities=8% Similarity=0.043 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l 189 (223)
+..++++|+.++.+.+..+.++.+|.+..||..+.-
T Consensus 82 ~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE 117 (227)
T PRK14157 82 TLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKE 117 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777777788888888765543
No 427
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=39.11 E-value=2.5e+02 Score=24.10 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 027451 161 LESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (223)
Q Consensus 161 Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~ 206 (223)
.+.++......+++++-.+..|..+.++-.+|.+.|..=+..|-.+
T Consensus 159 ~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k 204 (207)
T PF05010_consen 159 HQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISK 204 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555666777778888888888888888777666655444
No 428
>PRK14156 heat shock protein GrpE; Provisional
Probab=39.06 E-value=1.2e+02 Score=25.43 Aligned_cols=36 Identities=8% Similarity=0.031 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l 189 (223)
+..++++++.+++..+..+.++.+|.+..||..+.-
T Consensus 32 ~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE 67 (177)
T PRK14156 32 EKSELELANERADEFENKYLRAHAEMQNIQRRANEE 67 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777776677777777777777655443
No 429
>PRK14139 heat shock protein GrpE; Provisional
Probab=38.83 E-value=83 Score=26.55 Aligned_cols=13 Identities=15% Similarity=0.355 Sum_probs=5.1
Q ss_pred HhHHHHHHHHHHH
Q 027451 150 QMTTLKLKLKDLE 162 (223)
Q Consensus 150 ~~~~l~~e~~~Lk 162 (223)
+++.+.+++++++
T Consensus 40 ~l~~le~e~~elk 52 (185)
T PRK14139 40 ELAEAEAKAAELQ 52 (185)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444333
No 430
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=38.64 E-value=48 Score=26.57 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHh
Q 027451 156 LKLKDLESELETKSKEANAAETNAVALRKQSE 187 (223)
Q Consensus 156 ~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae 187 (223)
.+++.++.++++..+++....++.+.+++..+
T Consensus 18 ~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~ 49 (165)
T PF01025_consen 18 EELEELEKEIEELKERLLRLQAEFENYRKRLE 49 (165)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555554455555555555443
No 431
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=38.53 E-value=84 Score=31.38 Aligned_cols=56 Identities=23% Similarity=0.267 Sum_probs=32.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----HHHHhHhhHHHHHHHHHHHHHHHH
Q 027451 149 DQMTTLKLKLKDLESELETKSKEANAAETNAV-----ALRKQSEGFLFEYDRLLEENQNLR 204 (223)
Q Consensus 149 ~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~-----aLKkQae~l~~EYDrL~~e~~~l~ 204 (223)
..++.+...|+.++.+|.+.+.++..|.++.. .=++-.|...+-++||.+..+++.
T Consensus 636 ~smekl~~kI~~~keql~e~~~~l~~ak~~~~~~~~~~~~k~~Ek~~k~~~~l~eqi~kl~ 696 (759)
T KOG0981|consen 636 KSMEKLAEKIKAKKEQLKEAEAELKSAKADEKKQEGSKEKKEVEKKEKKLERLEEQLKKLE 696 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHHHHh
Confidence 34555777888888888888888777754411 111233444444555555555543
No 432
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=38.35 E-value=2.5e+02 Score=27.77 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=9.8
Q ss_pred hhHHHHHHHhHhhHHHHHHHHH
Q 027451 176 ETNAVALRKQSEGFLFEYDRLL 197 (223)
Q Consensus 176 ~~d~~aLKkQae~l~~EYDrL~ 197 (223)
+.+++-+.+|....+++=+...
T Consensus 381 q~~l~~~~~~l~~i~~~q~~~~ 402 (570)
T COG4477 381 QDNLEEIEKALTDIEDEQEKVQ 402 (570)
T ss_pred HHHHHHHHHHHHHHhhhHHHHH
Confidence 3444444444444444444333
No 433
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=38.28 E-value=3.1e+02 Score=24.88 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=8.7
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q 027451 149 DQMTTLKLKLKDLESELET 167 (223)
Q Consensus 149 ~~~~~l~~e~~~Lk~el~~ 167 (223)
..+..+..++.+++.++.+
T Consensus 214 ~~i~~L~~~l~~~~~~l~~ 232 (362)
T TIGR01010 214 SLISTLEGELIRVQAQLAQ 232 (362)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 434
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=38.27 E-value=1.3e+02 Score=24.21 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=13.8
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027451 178 NAVALRKQSEGFLFEYDRLLEENQNLRN 205 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~~~l~~ 205 (223)
+++.|+.-...+..|-|-+...|+.|+.
T Consensus 89 qv~~L~~e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 89 QVEKLKEENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444555555555555544
No 435
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=38.22 E-value=2.1e+02 Score=22.88 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q 027451 155 KLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (223)
Q Consensus 155 ~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l 189 (223)
..-+++|+.++..++.| +..||++.+.+
T Consensus 93 E~~~~kLe~e~~~Kdse-------i~~Lr~~L~~~ 120 (131)
T PF04859_consen 93 EIVVKKLEAELRAKDSE-------IDRLREKLDEL 120 (131)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 33455666666666553 55666554444
No 436
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=38.15 E-value=2e+02 Score=26.88 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 027451 152 TTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNL 203 (223)
Q Consensus 152 ~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l 203 (223)
+.+.+++++++.++++.+.++.+.. .-++|.+.++...+++..+.+++
T Consensus 245 ~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~ 292 (406)
T PF02388_consen 245 ESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEA 292 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777776666543322 33344444444444443333333
No 437
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=38.08 E-value=1.9e+02 Score=24.82 Aligned_cols=6 Identities=33% Similarity=0.645 Sum_probs=2.2
Q ss_pred HHHHHH
Q 027451 161 LESELE 166 (223)
Q Consensus 161 Lk~el~ 166 (223)
|+.+++
T Consensus 36 Lr~ql~ 41 (202)
T PF06818_consen 36 LRAQLR 41 (202)
T ss_pred HHHHHH
Confidence 333333
No 438
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=37.92 E-value=2.8e+02 Score=24.28 Aligned_cols=42 Identities=14% Similarity=0.278 Sum_probs=19.0
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHh
Q 027451 146 ALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSE 187 (223)
Q Consensus 146 ~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae 187 (223)
+...++..+...+++++..++..+..+.+.+.-.+.++.|.+
T Consensus 26 ~i~~~~~~i~~~l~~~~~~l~~~~~~~~~lk~l~~~~~~~~~ 67 (243)
T PF07160_consen 26 KIDQEVSAIEELLNDIEQELQREEEALPKLKELMESSEEQQK 67 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444455555555444444444444444444443
No 439
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=37.89 E-value=79 Score=34.60 Aligned_cols=65 Identities=23% Similarity=0.376 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhcccccCCC
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHSG 218 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~~~~~~ 218 (223)
.+++.++++.+.....++++.....++.+.-+.+.+..+|+....+++.++.....-+-|...++
T Consensus 932 ~~~~~~~~e~~~~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~a~ 996 (1395)
T KOG3595|consen 932 KRQELARLEAELKAAMKELEEKSAELQDLEEKLQRLKDEYEQLIAEKQELEEDMDACELKLLRAE 996 (1395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 440
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=37.72 E-value=3.2e+02 Score=24.99 Aligned_cols=48 Identities=27% Similarity=0.371 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHH
Q 027451 113 IRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSK 170 (223)
Q Consensus 113 i~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~ 170 (223)
-.+++.++-..+.++.|... ..+.+-++|+.+++++++|+..++-.++
T Consensus 5 q~eia~LrlEidtik~q~qe----------kE~ky~ediei~Kekn~~Lqk~lKLneE 52 (305)
T PF14915_consen 5 QDEIAMLRLEIDTIKNQNQE----------KEKKYLEDIEILKEKNDDLQKSLKLNEE 52 (305)
T ss_pred HHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34667777777777766331 2234555666666667777666664443
No 441
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=37.55 E-value=3.1e+02 Score=24.80 Aligned_cols=60 Identities=17% Similarity=0.289 Sum_probs=37.8
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027451 145 KALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (223)
Q Consensus 145 ~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~ 204 (223)
.....+++...+.+.+|+++-........++...+-.|-..-.....+|+.+....++|.
T Consensus 240 ~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe 299 (309)
T PF09728_consen 240 ETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLE 299 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666677777776666666666666666666666666666666666655554
No 442
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=37.37 E-value=3.2e+02 Score=24.79 Aligned_cols=23 Identities=22% Similarity=-0.012 Sum_probs=9.2
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHH
Q 027451 180 VALRKQSEGFLFEYDRLLEENQN 202 (223)
Q Consensus 180 ~aLKkQae~l~~EYDrL~~e~~~ 202 (223)
+.|+-..+..+.-|+.+...+++
T Consensus 281 ~~L~re~~~a~~~y~~~l~r~~~ 303 (362)
T TIGR01010 281 QRLVLQNELAQQQLKAALTSLQQ 303 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444433
No 443
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=37.28 E-value=1.4e+02 Score=22.95 Aligned_cols=7 Identities=29% Similarity=0.415 Sum_probs=3.0
Q ss_pred HHHHHHh
Q 027451 179 AVALRKQ 185 (223)
Q Consensus 179 ~~aLKkQ 185 (223)
+..||++
T Consensus 110 ~k~lk~E 116 (118)
T PF13815_consen 110 IKKLKKE 116 (118)
T ss_pred HHHHHHh
Confidence 4444443
No 444
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=37.21 E-value=2.3e+02 Score=25.32 Aligned_cols=12 Identities=17% Similarity=0.074 Sum_probs=6.5
Q ss_pred HHHHHHHHHhHH
Q 027451 50 GTVLVMLISSVY 61 (223)
Q Consensus 50 ~~l~vlF~Dai~ 61 (223)
..+.++|+|+-.
T Consensus 19 ~~~~~~~~~~~~ 30 (284)
T COG1792 19 LLLLLLFADSRG 30 (284)
T ss_pred HHHHHhheeccc
Confidence 344456667643
No 445
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=37.15 E-value=4.1e+02 Score=26.03 Aligned_cols=6 Identities=33% Similarity=0.595 Sum_probs=2.2
Q ss_pred HhHHHH
Q 027451 150 QMTTLK 155 (223)
Q Consensus 150 ~~~~l~ 155 (223)
++..+.
T Consensus 352 ~l~~l~ 357 (560)
T PF06160_consen 352 QLKELE 357 (560)
T ss_pred HHHHHH
Confidence 333333
No 446
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=37.04 E-value=1.3e+02 Score=23.98 Aligned_cols=9 Identities=33% Similarity=0.265 Sum_probs=4.1
Q ss_pred HHHHHHHhH
Q 027451 178 NAVALRKQS 186 (223)
Q Consensus 178 d~~aLKkQa 186 (223)
.++.|+.|.
T Consensus 114 TI~~L~~qL 122 (126)
T PF13118_consen 114 TIELLREQL 122 (126)
T ss_pred HHHHHHHHH
Confidence 344444444
No 447
>PHA00024 IX minor coat protein
Probab=37.03 E-value=44 Score=20.40 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=12.6
Q ss_pred HHHHHHHhHHHHHHHH
Q 027451 90 LLEATLMGASLFLAFM 105 (223)
Q Consensus 90 ~~q~YIsGF~LFL~lv 105 (223)
.+-+|+.||+|+..+.
T Consensus 8 ffgA~ilG~~l~~~Il 23 (33)
T PHA00024 8 FFGAYILGWALFYGIL 23 (33)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3448999999998854
No 448
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=37.01 E-value=2.4e+02 Score=25.13 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=8.6
Q ss_pred hHHHHHHHhHhhHHHH
Q 027451 177 TNAVALRKQSEGFLFE 192 (223)
Q Consensus 177 ~d~~aLKkQae~l~~E 192 (223)
.+.+-|+.|-+||-.+
T Consensus 111 ~en~~Lr~~n~~L~~~ 126 (292)
T KOG4005|consen 111 NENDSLRAINESLLAK 126 (292)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3455566666665433
No 449
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=36.96 E-value=2.7e+02 Score=23.89 Aligned_cols=22 Identities=5% Similarity=0.022 Sum_probs=8.4
Q ss_pred HHHhHhhHHHHHHHHHHHHHHH
Q 027451 182 LRKQSEGFLFEYDRLLEENQNL 203 (223)
Q Consensus 182 LKkQae~l~~EYDrL~~e~~~l 203 (223)
+..-...+.+.|..|-..|+++
T Consensus 81 ~~~dL~s~E~sfsdl~~ryek~ 102 (207)
T PF05010_consen 81 AYADLNSLEKSFSDLHKRYEKQ 102 (207)
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 3333333333343333333333
No 450
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=36.92 E-value=2.8e+02 Score=25.17 Aligned_cols=66 Identities=15% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 144 IKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 144 ~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
.+....+.+..+..++.......++..++++-+.+++-.+|..+.|+.----.++||++-.+.|+.
T Consensus 114 Iq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqk 179 (338)
T KOG3647|consen 114 IQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQK 179 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
No 451
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=36.85 E-value=32 Score=27.18 Aligned_cols=16 Identities=31% Similarity=0.702 Sum_probs=12.2
Q ss_pred HHHhHHHHHHHHHHHH
Q 027451 94 TLMGASLFLAFMIDRL 109 (223)
Q Consensus 94 YIsGF~LFL~lvI~R~ 109 (223)
=+-|.+||++|||+|.
T Consensus 76 GvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 76 GVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677788888888774
No 452
>PRK10869 recombination and repair protein; Provisional
Probab=36.82 E-value=4.2e+02 Score=25.98 Aligned_cols=35 Identities=11% Similarity=0.022 Sum_probs=27.1
Q ss_pred HHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027451 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (223)
Q Consensus 171 el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~ 205 (223)
++...+.+++.|++|.+.+.++|..+.++..+.|.
T Consensus 335 ~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~ 369 (553)
T PRK10869 335 QLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQ 369 (553)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666778889999999999999888877765443
No 453
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=36.75 E-value=2.7e+02 Score=23.82 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=18.9
Q ss_pred HHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027451 90 LLE-ATLMGASLFLAFMIDRLHHYIRELRIRRKTM 123 (223)
Q Consensus 90 ~~q-~YIsGF~LFL~lvI~R~~~li~~l~~~~~~~ 123 (223)
..| +|.+|.-+. -.+-+.+-++.++-++-+.+.
T Consensus 88 IARAAyr~Gv~~w-~~~~d~~~~~~k~~~~~~~~~ 121 (197)
T PRK12585 88 INRAAYDTGVPLA-IRIRDQLRSVKKDDIKKKKSL 121 (197)
T ss_pred HHHHHHHcCCCcc-hhhHHHHHHHHhhhhhhcchh
Confidence 345 688998776 444445555555555444443
No 454
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=36.74 E-value=91 Score=23.68 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=21.6
Q ss_pred hhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhcccc
Q 027451 176 ETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRL 214 (223)
Q Consensus 176 ~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~~ 214 (223)
+.....|++|.......++.+..+...|+..+...+...
T Consensus 50 e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~~~~~~ 88 (100)
T PF06428_consen 50 EEKNEQLEKQLKEKEALLESLQAQLKELKTVMESMESES 88 (100)
T ss_dssp HHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 344556666666666666666666666666666544433
No 455
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=36.58 E-value=1.5e+02 Score=26.93 Aligned_cols=18 Identities=17% Similarity=0.348 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027451 155 KLKLKDLESELETKSKEA 172 (223)
Q Consensus 155 ~~e~~~Lk~el~~~~~el 172 (223)
+.||++|+.+|....+++
T Consensus 88 etEI~eLksQL~RMrEDW 105 (305)
T PF15290_consen 88 ETEIDELKSQLARMREDW 105 (305)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346667777766665543
No 456
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=36.47 E-value=1.2e+02 Score=22.98 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 027451 105 MIDRLHHYIRELRIRRKTMEAIKN 128 (223)
Q Consensus 105 vI~R~~~li~~l~~~~~~~~al~k 128 (223)
-+.++...+.++....+.++.+.+
T Consensus 21 ~~~~l~~~~~e~~~~~~~l~~l~~ 44 (129)
T cd00890 21 QLQKLEAQLTEYEKAKETLETLKK 44 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355666666666666666666653
No 457
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=36.38 E-value=28 Score=25.05 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhcc-hh
Q 027451 3 QLLFTVMFSEMALIMVLLFK-TP 24 (223)
Q Consensus 3 ~lvf~~L~~Em~~~llLvlP-lP 24 (223)
...+....+=.++.+++++| +|
T Consensus 35 ~~~~~~~~~g~~~~~lv~vP~Wp 57 (76)
T PF06645_consen 35 SYTFYIYGAGVVLTLLVVVPPWP 57 (76)
T ss_pred HHHHHHHHHHHHHHHhheeCCcH
Confidence 34555566677788888888 46
No 458
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=36.23 E-value=4.7e+02 Score=26.42 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=16.4
Q ss_pred hhHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027451 176 ETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (223)
Q Consensus 176 ~~d~~aLKkQae~l~~EYDrL~~e~~~l~ 204 (223)
+.+...|+-|.+-.+.-|+.|+...++++
T Consensus 369 e~~~~~L~R~~~~~~~lY~~lL~r~~e~~ 397 (726)
T PRK09841 369 QQEVLRLSRDVEAGRAVYLQLLNRQQELS 397 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555666666666665543
No 459
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=36.16 E-value=3.6e+02 Score=25.07 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
.++.+-.+......++..++......-.-...+..++.++.++.++.+.+.+.
T Consensus 267 qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 267 QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444445555555667777777777777766653
No 460
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=36.16 E-value=4.8e+02 Score=26.96 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=14.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 027451 94 TLMGASLFLAFMIDRLHHYIRELR 117 (223)
Q Consensus 94 YIsGF~LFL~lvI~R~~~li~~l~ 117 (223)
.+.|+.-.+ ..|..++.+|+.-.
T Consensus 371 ~~~g~~~~~-~~~d~vi~~ir~~~ 393 (800)
T TIGR01063 371 ILEGLLIAL-DNIDEVIALIRASQ 393 (800)
T ss_pred HHHHHHHHH-HhhhHHHHHHHhCC
Confidence 788888733 45666666665433
No 461
>PLN02943 aminoacyl-tRNA ligase
Probab=35.84 E-value=1.5e+02 Score=31.10 Aligned_cols=25 Identities=12% Similarity=0.316 Sum_probs=16.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Q 027451 149 DQMTTLKLKLKDLESELETKSKEAN 173 (223)
Q Consensus 149 ~~~~~l~~e~~~Lk~el~~~~~el~ 173 (223)
+|.+++.+++++++++++..++.+.
T Consensus 889 ~E~~rL~K~l~klekei~~~~~kLs 913 (958)
T PLN02943 889 AEVERLSKRLSKMQTEYDALAARLS 913 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455566777777777777766653
No 462
>PRK14156 heat shock protein GrpE; Provisional
Probab=35.70 E-value=80 Score=26.46 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=21.2
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
+++.+++|.+.+...|-|+..|.++.+++.+
T Consensus 35 ~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~ 65 (177)
T PRK14156 35 ELELANERADEFENKYLRAHAEMQNIQRRAN 65 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777777777665554
No 463
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=35.69 E-value=1e+02 Score=26.85 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhHHHHH
Q 027451 1 MQQLLFTVMFSEMALIMVLLFKTPLRKLLIMSLDRVKRGRGPVVVKTVAGTVLVMLISSVYNIM 64 (223)
Q Consensus 1 ~~~lvf~~L~~Em~~~llLvlPlP~R~~~~~~l~~~~~~r~~~~~~~~~~~l~vlF~Dai~~~~ 64 (223)
+++-+.+++.+=.++ .+-++|+ |+ ...+.-+.|.....+|+++++|+=++-|..
T Consensus 109 ~~~~l~~~~~~~~v~-a~~lFPl---WP------~~~r~gv~YlS~~~lgll~~~~~laivRli 162 (224)
T PF03839_consen 109 LMQYLIGALLLVGVI-AICLFPL---WP------RWMRQGVYYLSVGALGLLGLFFALAIVRLI 162 (224)
T ss_pred HHHHHHHHHHHHHHH-HHHhhhc---Ch------HHHhheeehhHHHHHHHHHHHHHHHHHHHH
No 464
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=35.65 E-value=1.6e+02 Score=20.83 Aligned_cols=54 Identities=24% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 145 KALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 145 ~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
.+....+..+-.|+.+|+.-|+ .+..+||.+.+++..==++..++++-+..+..
T Consensus 2 ~e~~~~l~~LL~EN~~LKealr----------Q~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~ 55 (68)
T PF11577_consen 2 EEMQQQLQELLQENQDLKEALR----------QNNQAMKERFEELLAWQEKQKEEREFLERKFQ 55 (68)
T ss_dssp -----HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 465
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=35.57 E-value=2.2e+02 Score=26.31 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--hH
Q 027451 109 LHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRK--QS 186 (223)
Q Consensus 109 ~~~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKk--Qa 186 (223)
+..+=.+|+..++++..++.+..-... ++--|+.+++..++++......+-+=-+ -.
T Consensus 225 vs~Le~eL~~iqaqL~tvks~m~~~nP---------------------qi~~LkarieSlrkql~qe~q~isag~~~~sl 283 (372)
T COG3524 225 VSKLEDELIVIQAQLDTVKSVMNPENP---------------------QIPGLKARIESLRKQLLQEKQAISAGGSSQSL 283 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCC---------------------cchhHHHHHHHHHHHHHHHHHHhcCCCCccch
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhhh
Q 027451 187 EGFLFEYDRLLEENQNLRNQLQSL 210 (223)
Q Consensus 187 e~l~~EYDrL~~e~~~l~~~l~~~ 210 (223)
.|+..||.||--|++=.+++++..
T Consensus 284 ~~qaAefq~l~lE~~fAekay~AA 307 (372)
T COG3524 284 SNQAAEFQRLYLENTFAEKAYAAA 307 (372)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
No 466
>PRK09343 prefoldin subunit beta; Provisional
Probab=35.52 E-value=1.9e+02 Score=22.44 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHH
Q 027451 153 TLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEEN 200 (223)
Q Consensus 153 ~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~ 200 (223)
...+-.++++..++-.+.+++.-+...+.++++.+.++..+..+...+
T Consensus 68 d~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 68 DKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 467
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=35.52 E-value=2e+02 Score=25.26 Aligned_cols=62 Identities=23% Similarity=0.472 Sum_probs=0.0
Q ss_pred chHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhcc
Q 027451 140 SSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDW 212 (223)
Q Consensus 140 ~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~ 212 (223)
+.+...++..-=+.+....+.++.+.......|+. .+++-.+||.+..||..++.+++.--|
T Consensus 169 Tpe~v~Al~~Ir~~L~~~~~~~e~~~~~a~~~L~~-----------Ye~lg~~F~~ivreY~~l~~~ie~k~W 230 (238)
T PF14735_consen 169 TPETVPALRKIRDHLEEAIEELEQELQKARQRLES-----------YEGLGPEFEEIVREYTDLQQEIENKRW 230 (238)
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhcccHhHHHHHHHHHHHHHHHHHHHH
No 468
>PRK04406 hypothetical protein; Provisional
Probab=35.48 E-value=1.7e+02 Score=20.98 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHH
Q 027451 143 EIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLE 198 (223)
Q Consensus 143 ~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~ 198 (223)
....+.+-+..|...+.-.+.-++.+.+.+.....+++.|+.|...+ ++|+.+
T Consensus 5 ~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L---~~rl~~ 57 (75)
T PRK04406 5 TIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV---VGKVKN 57 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHh
No 469
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=35.30 E-value=3.3e+02 Score=24.31 Aligned_cols=102 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--
Q 027451 107 DRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRK-- 184 (223)
Q Consensus 107 ~R~~~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKk-- 184 (223)
..++.=++.+..-...+..+..-.+.... ..-.+-...+.+--++...++..|+.+++..+.++.++..++..|..
T Consensus 34 ~st~~~Vr~lLqqy~~~~~~i~~le~~~~--~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYk 111 (258)
T PF15397_consen 34 DSTALKVRKLLQQYDIYRTAIDILEYSNH--KQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYK 111 (258)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccCh--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred ---------hHhhHHHHHHHHHHHHHHHHHhHhhh
Q 027451 185 ---------QSEGFLFEYDRLLEENQNLRNQLQSL 210 (223)
Q Consensus 185 ---------Qae~l~~EYDrL~~e~~~l~~~l~~~ 210 (223)
|+.+|.+.-+.+.++++.-.+.+..+
T Consensus 112 D~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~ 146 (258)
T PF15397_consen 112 DHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEM 146 (258)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 470
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.27 E-value=3.2e+02 Score=25.49 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhcc
Q 027451 145 KALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDW 212 (223)
Q Consensus 145 ~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~ 212 (223)
...+++++.+-.+.+.|+.--++..+...+-++..++|+.|...+++.-|=|...-++.+.+.+..+.
T Consensus 221 ~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~ 288 (365)
T KOG2391|consen 221 RRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEA 288 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcC
No 471
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=35.22 E-value=1.7e+02 Score=23.49 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027451 162 ESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (223)
Q Consensus 162 k~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~ 205 (223)
+.+|+..+.+|.. +++.|+.-...+..|-|-+...|+.|+.
T Consensus 76 k~eLE~~k~~L~q---qv~~L~~e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 76 KHELEKEKAELQQ---QVEKLKEENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 472
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=35.17 E-value=1.6e+02 Score=27.27 Aligned_cols=50 Identities=24% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHH
Q 027451 145 KALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYD 194 (223)
Q Consensus 145 ~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYD 194 (223)
+.+.++..++.++.++|.++++.+++.|..-...++++++-++.++..++
T Consensus 104 k~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~ 153 (355)
T PF09766_consen 104 KRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLG 153 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhC
No 473
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=35.17 E-value=3.5e+02 Score=24.60 Aligned_cols=106 Identities=19% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHH-HH------HHHHHHHHHHHHHHHhhhHHHHHHH
Q 027451 112 YIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLK-LK------DLESELETKSKEANAAETNAVALRK 184 (223)
Q Consensus 112 li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e-~~------~Lk~el~~~~~el~~~~~d~~aLKk 184 (223)
++.=|-+.+...+-++...+...+.-.....|+..++.++.+-+++ |+ +-+--|++..+|++.-+.=+++||.
T Consensus 59 YLTPLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 59 YLTPLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRS 138 (305)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred ----hHhhHHHHHHHHHHHHHHHHHhHhhhcccccCC
Q 027451 185 ----QSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHS 217 (223)
Q Consensus 185 ----Qae~l~~EYDrL~~e~~~l~~~l~~~~~~~~~~ 217 (223)
.=+|.|+.|-...-.|.+|..-|++++-=.+++
T Consensus 139 sL~ekDkGiQKYFvDINiQN~KLEsLLqsMElAq~g~ 175 (305)
T PF15290_consen 139 SLAEKDKGIQKYFVDINIQNKKLESLLQSMELAQSGS 175 (305)
T ss_pred hhchhhhhHHHHHhhhhhhHhHHHHHHHHHHHHHhcc
No 474
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=35.15 E-value=3.2e+02 Score=29.92 Aligned_cols=90 Identities=17% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q 027451 106 IDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQ 185 (223)
Q Consensus 106 I~R~~~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQ 185 (223)
+-+...-+..+..+.+..+.+..+.......-....++.++...++....+.++++...++ ++.+..+.+..|..+
T Consensus 201 vk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~----el~k~~~~~~~l~~e 276 (1294)
T KOG0962|consen 201 VKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLK----ELEKLLKQVKLLDSE 276 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q ss_pred HhhHHHHHHHHHHH
Q 027451 186 SEGFLFEYDRLLEE 199 (223)
Q Consensus 186 ae~l~~EYDrL~~e 199 (223)
-.++.++|+++...
T Consensus 277 ~~~l~~~~~~l~~~ 290 (1294)
T KOG0962|consen 277 HKNLKKQISRLREK 290 (1294)
T ss_pred HHHHHHHHHHHHhh
No 475
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=35.03 E-value=60 Score=23.42 Aligned_cols=32 Identities=6% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhhcc
Q 027451 6 FTVMFSEMALIMVLLFKTPLRKLLIMSLDRVKRGR 40 (223)
Q Consensus 6 f~~L~~Em~~~llLvlPlP~R~~~~~~l~~~~~~r 40 (223)
+.++++-+++|++.|.|+ |.++...++...++
T Consensus 3 ~~fl~~Pliif~ifVap~---wl~lHY~~k~~~~~ 34 (75)
T TIGR02976 3 IFFLAIPLIIFVIFVAPL---WLILHYRSKRKTAA 34 (75)
T ss_pred hHHHHHHHHHHHHHHHHH---HHHHHHHhhhccCC
No 476
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=34.91 E-value=2.5e+02 Score=22.84 Aligned_cols=107 Identities=10% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHH----
Q 027451 95 LMGASLFLAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSK---- 170 (223)
Q Consensus 95 IsGF~LFL~lvI~R~~~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~---- 170 (223)
+..|.+|++++-+=++.-|.....-+. +...++.+.+.+....-..........+...+.+..+.-.+-...-.
T Consensus 25 ~i~Flil~~lL~~~l~kpi~~~l~~R~--~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~ 102 (175)
T PRK14472 25 AVTFVIVLLILKKIAWGPILSALEERE--KGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRA 102 (175)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -HHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 171 -EANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 171 -el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
.+..|+.+.+.+++++..- +..|.++...++..
T Consensus 103 ~~~~~A~~ea~~~~~~a~~~------I~~e~~~a~~~l~~ 136 (175)
T PRK14472 103 EITEKAHTEAKKMIASAKEE------IEQEKRRALDVLRN 136 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
No 477
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=34.89 E-value=1.8e+02 Score=21.10 Aligned_cols=56 Identities=11% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 149 DQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 149 ~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
+.+..+..++..|+..+. .++..-.++..|-++.+++..--+.+....++.++-|.
T Consensus 11 ~dIk~vd~KVdaLq~~V~----~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 11 QDIKAVDDKVDALQTQVD----DLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 478
>PF01813 ATP-synt_D: ATP synthase subunit D ; InterPro: IPR002699 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the D subunit found in V1 and A1 complexes of V- and A-ATPases, respectively. Subunit D appears to be located in the central stalk, whereas subunits E and G form part of the peripheral stalk connecting V1 and V0. This subunit is the most likely homologue to the gamma subunit of the F1 complex in F-ATPases, which undergoes rotation during ATP hydrolysis and serves an essential function in rotary catalysis [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0042626 ATPase activity, coupled to transmembrane movement of substances, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3A5C_G 3A5D_G 3J0J_G 3AON_A.
Probab=34.88 E-value=1.8e+02 Score=24.24 Aligned_cols=46 Identities=24% Similarity=0.454 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 164 ELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 164 el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
+|-..++.+..++.=...|++..+.|..|+..+.+++..++..++.
T Consensus 2 ~L~~lk~rl~~a~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~ 47 (196)
T PF01813_consen 2 ELIRLKRRLKLAKRGHKLLKKKRDALIREFRKLIKEAEELREELEE 47 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=34.80 E-value=3.1e+02 Score=24.54 Aligned_cols=61 Identities=25% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHH---HHHHHHHHHHHHhHh
Q 027451 145 KALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEY---DRLLEENQNLRNQLQ 208 (223)
Q Consensus 145 ~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EY---DrL~~e~~~l~~~l~ 208 (223)
+.+..-..-+++.++.+++.+++..+.... +...|++|.+++...- .++..+-.+|.+-+.
T Consensus 2 ~~l~~l~~pl~e~l~~~~~~l~~~~~~~~~---~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~ 65 (304)
T PF02646_consen 2 EQLEQLLKPLKEQLEKFEKRLEESFEQRSE---EFGSLKEQLKQLSEANGEIQQLSQEASNLTSALK 65 (304)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
No 480
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=34.71 E-value=2.2e+02 Score=22.07 Aligned_cols=87 Identities=14% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhH
Q 027451 107 DRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQS 186 (223)
Q Consensus 107 ~R~~~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQa 186 (223)
+|+.++=..+...+.+.+.+.+ +.+.+...+..+.++.....+.+.+.+.++.-+..+++. .|++
T Consensus 16 n~La~Le~slE~~K~S~~eL~k--------------qkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~-eK~a 80 (107)
T PF09304_consen 16 NRLASLERSLEDEKTSQGELAK--------------QKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED-EKQA 80 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHH--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_pred h-hHHHHHHHHHHHHHHHHHhHh
Q 027451 187 E-GFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 187 e-~l~~EYDrL~~e~~~l~~~l~ 208 (223)
. .++..|-+--.+.+.+.=.+.
T Consensus 81 k~~l~~r~~k~~~dka~lel~l~ 103 (107)
T PF09304_consen 81 KLELESRLLKAQKDKAILELKLA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHH
No 481
>smart00340 HALZ homeobox associated leucin zipper.
Probab=34.69 E-value=1e+02 Score=19.93 Aligned_cols=32 Identities=31% Similarity=0.378 Sum_probs=0.0
Q ss_pred HHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027451 173 NAAETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (223)
Q Consensus 173 ~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~ 204 (223)
+.-|.|-+-||+=.+.|..|--||..|.++|+
T Consensus 1 KQTEvdCe~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 1 KQTEVDCELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=34.66 E-value=1.6e+02 Score=20.49 Aligned_cols=55 Identities=13% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHhHhhHHHHHHHHHHHHHH
Q 027451 148 EDQMTTLKLKLKDLESELETKSKEANAAE-TNAVALRKQSEGFLFEYDRLLEENQN 202 (223)
Q Consensus 148 ~~~~~~l~~e~~~Lk~el~~~~~el~~~~-~d~~aLKkQae~l~~EYDrL~~e~~~ 202 (223)
...+......+++.+..|+..+-|+...- ++...++.+..+...+++.+..++.+
T Consensus 24 ~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~~ 79 (79)
T PF05008_consen 24 KSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELKK 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 483
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=34.65 E-value=1.8e+02 Score=21.13 Aligned_cols=72 Identities=14% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhcccc
Q 027451 142 EEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRL 214 (223)
Q Consensus 142 ~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~~ 214 (223)
...+.+..++....+|+++|+.-+.....+|-+--.=-.-|..|..+++.. ..+.....+-++.-..-..||
T Consensus 5 ~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 76 (76)
T PF11544_consen 5 KQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS-NDLNKQENDDRNDYIQLPKRF 76 (76)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCT--TTT-------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccchhhhhhHHHhhhhccccC
No 484
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=34.62 E-value=4.8e+02 Score=28.04 Aligned_cols=94 Identities=17% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcch--h-HHHHHHHHHHHHhhcc---hhHHHHHHHHHH------HHHHHHhHHHHHHhhhhcccccCCCC
Q 027451 11 SEMALIMVLLFKT--P-LRKLLIMSLDRVKRGR---GPVVVKTVAGTV------LVMLISSVYNIMMIQKRWIDDEGAVV 78 (223)
Q Consensus 11 ~Em~~~llLvlPl--P-~R~~~~~~l~~~~~~r---~~~~~~~~~~~l------~vlF~Dai~~~~k~~~~~~~~~~~~~ 78 (223)
+.-++.++=.+|| | +..-+++++.+++..+ ++.+...++|+. ++--||.+-+.++..-+-.++
T Consensus 647 vd~~lkllRkl~W~D~e~~~yli~~~~k~w~iky~~i~~lA~llaGL~~y~~~fvi~VID~vlE~Ir~glEin~~----- 721 (1128)
T KOG2051|consen 647 VDRVLKLLRKLDWSDPEVKQYLISCFSKPWKIKYQNIHALASLLAGLSSYHPEFVIHVIDHVLEDIRPGLEINDY----- 721 (1128)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHhhhhcCcH-----
Q ss_pred CchhHHHHHHHHHHH-HHHhHHHHHH----HHHHHHHHHHH
Q 027451 79 NPTDQVLLANHLLEA-TLMGASLFLA----FMIDRLHHYIR 114 (223)
Q Consensus 79 ~~~~~~~~r~~~~q~-YIsGF~LFL~----lvI~R~~~li~ 114 (223)
+.-.++.+.| ||+-..=|=+ .++++++++|.
T Consensus 722 -----~~nQrriA~aryL~ELynfemvds~vIl~tLy~~i~ 757 (1128)
T KOG2051|consen 722 -----VSNQRRIALARYLGELYNFEMVDSDVILNTLYHLIS 757 (1128)
T ss_pred -----HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhc
No 485
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=34.61 E-value=80 Score=22.88 Aligned_cols=32 Identities=25% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHH
Q 027451 162 ESELETKSKEANAAETNAVALRKQSEGFLFEY 193 (223)
Q Consensus 162 k~el~~~~~el~~~~~d~~aLKkQae~l~~EY 193 (223)
+++|++.-..-++.+.++.+|.+|+-.++.+|
T Consensus 1 k~~L~~l~~~k~~Le~~L~~lE~qIy~~Et~Y 32 (80)
T PF09340_consen 1 KKELKELLQKKKKLEKDLAALEKQIYDKETSY 32 (80)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=34.41 E-value=85 Score=22.79 Aligned_cols=33 Identities=9% Similarity=0.109 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 027451 151 MTTLKLKLKDLESELETKSKEANAAETNAVALR 183 (223)
Q Consensus 151 ~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLK 183 (223)
+..+.+|+.+|+.+|+..+.||.....+....+
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk~ 34 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKREFQIKE 34 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
No 487
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=34.26 E-value=1.5e+02 Score=20.48 Aligned_cols=34 Identities=29% Similarity=0.492 Sum_probs=0.0
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027451 144 IKALEDQMTTLKLKLKDLESELETKSKEANAAET 177 (223)
Q Consensus 144 ~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~ 177 (223)
...+.+-|+.|..||..++.++..+..-...|++
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAea 56 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSASRAAAEA 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=34.19 E-value=4.4e+02 Score=25.47 Aligned_cols=95 Identities=17% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccc----------ccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 027451 109 LHHYIRELRIRRKTMEAIKNQSRGFEDGK----------AASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETN 178 (223)
Q Consensus 109 ~~~li~~l~~~~~~~~al~kQa~~~~~~~----------~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d 178 (223)
+-.+..++.+++.+-+-+.+.......+. .-..|++.....-|..+..||+.|++.+...++
T Consensus 203 vN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk-------- 274 (552)
T KOG2129|consen 203 VNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQK-------- 274 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHh-hhccc
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQ-SLDWR 213 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l~~~l~-~~~~~ 213 (223)
+.-.|=..=.+.|-|-- +|+..+|.+|. ..+||
T Consensus 275 -~~~ek~~qy~~Ee~~~r-een~rlQrkL~~e~erR 308 (552)
T KOG2129|consen 275 -SYQEKLMQYRAEEVDHR-EENERLQRKLINELERR 308 (552)
T ss_pred -HHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHH
No 489
>PF13514 AAA_27: AAA domain
Probab=34.11 E-value=4.7e+02 Score=27.82 Aligned_cols=109 Identities=21% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q 027451 106 IDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQ 185 (223)
Q Consensus 106 I~R~~~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQ 185 (223)
+.....-..+...+....+.+..+......+.....-.........+.+..+++.++.+++..+.++.....++..++.+
T Consensus 846 l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~e~~~~d~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~ 925 (1111)
T PF13514_consen 846 LREAEERAEERRELREELEDLERQLERQADGLDLEELEEELEELDPDELEAELEELEEELEELEEELEELQEERAELEQE 925 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhHH--HHHHHHHHHHHHHHHhHhhhcccc
Q 027451 186 SEGFL--FEYDRLLEENQNLRNQLQSLDWRL 214 (223)
Q Consensus 186 ae~l~--~EYDrL~~e~~~l~~~l~~~~~~~ 214 (223)
.+.+. ..|.++..+.+.+..++...-.++
T Consensus 926 l~~l~~~~~~a~l~~e~e~~~a~l~~~~~~~ 956 (1111)
T PF13514_consen 926 LEALEGDDDAAELEQEREEAEAELEELAEEW 956 (1111)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
No 490
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=34.10 E-value=2.3e+02 Score=28.41 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=0.0
Q ss_pred cchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHH---HHHHHHHHHHHHHhHh
Q 027451 139 ASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFE---YDRLLEENQNLRNQLQ 208 (223)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~E---YDrL~~e~~~l~~~l~ 208 (223)
...+........++....|+++++..+..-+.++.....|++.+..|-.|++-+ +-.|.+|.+.+-+++.
T Consensus 27 ~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l~ 99 (701)
T PF09763_consen 27 ESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTLS 99 (701)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhcC
No 491
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=33.98 E-value=1.8e+02 Score=22.14 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027451 161 LESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (223)
Q Consensus 161 Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~ 205 (223)
|...|.+|+.|+.. +..++.-+..+....|.|.++...+.+
T Consensus 2 l~~ri~eKk~ELe~----L~~l~~lS~~L~~qle~L~~kl~~m~d 42 (103)
T PF08654_consen 2 LQARIAEKKAELEA----LKQLRDLSADLASQLEALSEKLETMAD 42 (103)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
No 492
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=33.97 E-value=1.1e+02 Score=29.55 Aligned_cols=60 Identities=27% Similarity=0.445 Sum_probs=0.0
Q ss_pred cchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHh--------------------------hhHHHHHHHhHhhHHHH
Q 027451 139 ASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAA--------------------------ETNAVALRKQSEGFLFE 192 (223)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~--------------------------~~d~~aLKkQae~l~~E 192 (223)
..+++.+.+..++..|++++.+|+.+|..+.. .| ..|+..++.|..+.+--
T Consensus 22 a~a~~i~~L~~ql~aLq~~v~eL~~~laa~~~---aa~~gA~~~~~~~a~~~aP~~~a~~~~T~d~~~~~~qqiAn~~lK 98 (514)
T PF11336_consen 22 ATADQIKALQAQLQALQDQVNELRAKLAAKPA---AAPGGAAIGPAATAAAAAPSSDAQAGLTNDDATEMRQQIANAQLK 98 (514)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCccccccccccccccCCCcccccccChHHHHHHHHHHHhhhhh
Q ss_pred HHHHHHHHH
Q 027451 193 YDRLLEENQ 201 (223)
Q Consensus 193 YDrL~~e~~ 201 (223)
-|.|.|.-+
T Consensus 99 v~~l~da~~ 107 (514)
T PF11336_consen 99 VESLEDAAE 107 (514)
T ss_pred HHHHhhHHh
No 493
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=33.90 E-value=2.3e+02 Score=22.12 Aligned_cols=101 Identities=17% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 027451 105 MIDRLHHYIREL---------RIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAA 175 (223)
Q Consensus 105 vI~R~~~li~~l---------~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~ 175 (223)
++.+++.+.... ...+...+.+..+-....- ......-..+....+.+.++..-...+.++..+
T Consensus 21 l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~-------~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~ 93 (139)
T PF05615_consen 21 LLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEF-------SILKSQLILEMNKRERENYEQLNEEIEQEIEQA 93 (139)
T ss_pred HHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhc-cc
Q 027451 176 ETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLD-WR 213 (223)
Q Consensus 176 ~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~-~~ 213 (223)
+.+++.||.+.+.-...+..- .||+.+.+.+..-. -|
T Consensus 94 k~~ie~lk~~L~~ak~~r~~k-~eyd~La~~I~~~p~sR 131 (139)
T PF05615_consen 94 KKEIEELKEELEEAKRVRQNK-EEYDALAKKINSQPTSR 131 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCH
No 494
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=33.54 E-value=3.7e+02 Score=24.41 Aligned_cols=94 Identities=17% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 027451 102 LAFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVA 181 (223)
Q Consensus 102 L~lvI~R~~~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~a 181 (223)
|+--+.-..+.|+++..-+.-.......+..-.- +..+..+. ++.-|+....+++.....|..+..|..+
T Consensus 68 lat~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rpl-------el~e~Ekv---lk~aIq~i~~~~q~~~~~Lnnvasdea~ 137 (338)
T KOG3647|consen 68 LATDLTQRGTTICEMLSKELLHKESLMSAAQRPL-------ELLEVEKV---LKSAIQAIQVRLQSSRAQLNNVASDEAA 137 (338)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHHHHHHcCCc-------cHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHH
Q 027451 182 LRKQSEGFLFEYDRLLEENQNLRN 205 (223)
Q Consensus 182 LKkQae~l~~EYDrL~~e~~~l~~ 205 (223)
|-..++.-..||.|+....+.||.
T Consensus 138 L~~Kierrk~ElEr~rkRle~Lqs 161 (338)
T KOG3647|consen 138 LGSKIERRKAELERTRKRLEALQS 161 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
No 495
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=33.47 E-value=1.5e+02 Score=22.29 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 167 TKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 167 ~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
..++..+-.+..++.++++.+.++++.+.+.++.+.++..++.
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 84 SLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=33.45 E-value=2e+02 Score=22.90 Aligned_cols=43 Identities=23% Similarity=0.251 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHH
Q 027451 151 MTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEY 193 (223)
Q Consensus 151 ~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EY 193 (223)
+....++++++.+=.+....+++..+..++++.+-..++.++|
T Consensus 41 ~~~~~~~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~ 83 (126)
T PF07028_consen 41 QKKLLEELKNLSKIQESQRSELKELKQELDVLSKELQALRKEY 83 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=33.39 E-value=2.5e+02 Score=26.54 Aligned_cols=68 Identities=13% Similarity=0.192 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHhHh-hHHHHHHHHHHHHHHHHHhHhhhcccccC
Q 027451 150 QMTTLKLKLKDLESELETKSKEANAA------------ETNAVALRKQSE-GFLFEYDRLLEENQNLRNQLQSLDWRLSH 216 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~el~~~~~el~~~------------~~d~~aLKkQae-~l~~EYDrL~~e~~~l~~~l~~~~~~~~~ 216 (223)
+...+..++..++.++.+.+.++..+ +..+..++.+-- ....+++....+...++.++.....+.++
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q ss_pred C
Q 027451 217 S 217 (223)
Q Consensus 217 ~ 217 (223)
.
T Consensus 317 ~ 317 (457)
T TIGR01000 317 G 317 (457)
T ss_pred C
No 498
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.36 E-value=1.3e+02 Score=28.77 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 027451 103 AFMIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVAL 182 (223)
Q Consensus 103 ~lvI~R~~~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aL 182 (223)
...+..+..+-.+-.++....+.++.+-...++.-+........ ....+.++++.++.+++..+.++...+++++.+
T Consensus 25 ~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~---~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ 101 (429)
T COG0172 25 ALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED---DAEELIAEVKELKEKLKELEAALDELEAELDTL 101 (429)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch---hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
No 499
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=33.29 E-value=2e+02 Score=21.30 Aligned_cols=46 Identities=24% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHH
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQN 202 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~ 202 (223)
++++|..++...+.+...+..|+.+++.++..-..|=+|-.+...+
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDA 70 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 500
>PF10167 NEP: Uncharacterised conserved protein; InterPro: IPR019320 This entry represents the uncharacterised protein family UPF0402. It contains a characteristic NEP sequence motif. Their function is not known.
Probab=33.28 E-value=2.4e+02 Score=22.10 Aligned_cols=72 Identities=24% Similarity=0.297 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhcccccCCCCCCCC
Q 027451 151 MTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHSGSKKDS 223 (223)
Q Consensus 151 ~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~~~~~~~~~~~ 223 (223)
+-..+.++.++..+++..--++.-+-.-+..|++ ++..=+.-.+++..--.++.++...+.|...+++.++|
T Consensus 46 lv~~k~~v~~~~~~~~g~~~D~eya~~aVksM~~-a~~~F~nI~~lL~~si~~kqql~~~~sr~~~~~~~~~s 117 (118)
T PF10167_consen 46 LVELKKEVQELSQELQGACYDLEYAISAVKSMKK-AESSFSNIQELLKNSIFLKQQLKYEESRSKKSDSPSSS 117 (118)
T ss_pred HHHHHHHHHHHHHHhccceecHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHhHHhccccccccCCCC
Done!