Query 027451
Match_columns 223
No_of_seqs 119 out of 328
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 16:58:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027451.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027451hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ic2_A Tropomyosin alpha chain 95.6 0.19 6.6E-06 35.5 10.6 59 155-213 19-77 (81)
2 3u59_A Tropomyosin beta chain; 95.4 0.2 6.8E-06 36.9 10.3 58 156-213 23-80 (101)
3 3hnw_A Uncharacterized protein 95.2 0.22 7.4E-06 39.0 10.5 30 178-207 104-133 (138)
4 3hnw_A Uncharacterized protein 94.8 0.19 6.7E-06 39.3 9.3 53 158-210 77-129 (138)
5 3u1c_A Tropomyosin alpha-1 cha 94.8 0.36 1.2E-05 35.6 10.3 58 157-214 24-81 (101)
6 3vkg_A Dynein heavy chain, cyt 94.7 0.099 3.4E-06 58.7 9.7 61 156-216 2014-2074(3245)
7 3q8t_A Beclin-1; autophagy, AT 94.4 0.58 2E-05 34.3 10.4 63 154-216 23-85 (96)
8 3a7p_A Autophagy protein 16; c 93.6 0.79 2.7E-05 36.4 10.5 63 144-206 70-132 (152)
9 2yy0_A C-MYC-binding protein; 93.3 0.16 5.4E-06 33.4 5.0 32 178-209 20-51 (53)
10 3oja_B Anopheles plasmodium-re 92.5 2.3 7.8E-05 39.5 13.8 54 156-209 523-576 (597)
11 2jee_A YIIU; FTSZ, septum, coi 92.3 2 7E-05 30.5 10.0 55 147-208 18-72 (81)
12 3q8t_A Beclin-1; autophagy, AT 92.3 1.3 4.3E-05 32.4 9.3 64 145-208 7-70 (96)
13 3ol1_A Vimentin; structural ge 92.2 2.2 7.6E-05 32.2 10.9 15 182-196 88-102 (119)
14 3mq7_A Bone marrow stromal ant 92.1 2.2 7.6E-05 32.3 10.5 39 178-217 79-117 (121)
15 3cl3_D NF-kappa-B essential mo 92.0 0.67 2.3E-05 35.7 7.7 99 109-207 4-106 (130)
16 3na7_A HP0958; flagellar bioge 91.6 1.7 5.7E-05 36.8 10.7 47 160-206 94-140 (256)
17 2dfs_A Myosin-5A; myosin-V, in 91.6 0.69 2.4E-05 47.2 9.6 34 171-204 985-1018(1080)
18 3qh9_A Liprin-beta-2; coiled-c 89.6 3.5 0.00012 29.2 8.9 54 146-199 23-76 (81)
19 3a7o_A Autophagy protein 16; c 89.5 3.8 0.00013 28.3 8.9 55 155-209 17-71 (75)
20 3u1c_A Tropomyosin alpha-1 cha 89.4 4.9 0.00017 29.4 10.6 24 157-180 45-68 (101)
21 2v71_A Nuclear distribution pr 87.3 11 0.00037 30.9 12.2 22 186-207 90-111 (189)
22 3oja_B Anopheles plasmodium-re 87.3 3.1 0.00011 38.6 9.9 61 148-208 522-582 (597)
23 3s4r_A Vimentin; alpha-helix, 87.0 5.6 0.00019 28.7 9.1 23 106-128 15-37 (93)
24 3u59_A Tropomyosin beta chain; 86.5 7.6 0.00026 28.2 11.1 27 157-183 45-71 (101)
25 1ic2_A Tropomyosin alpha chain 85.9 3.6 0.00012 28.8 7.4 26 176-201 26-51 (81)
26 3vkg_A Dynein heavy chain, cyt 85.5 41 0.0014 38.4 18.7 44 162-205 2013-2056(3245)
27 2efr_A General control protein 83.6 15 0.0005 29.1 11.5 39 156-194 77-115 (155)
28 3a7p_A Autophagy protein 16; c 83.4 11 0.00038 29.8 9.8 19 178-196 111-129 (152)
29 3na7_A HP0958; flagellar bioge 83.4 19 0.00065 30.2 14.4 17 177-193 132-148 (256)
30 3viq_B Mating-type switching p 81.8 2.2 7.4E-05 30.6 4.7 19 188-206 38-56 (85)
31 3mq7_A Bone marrow stromal ant 79.5 13 0.00045 28.1 8.5 79 105-190 23-105 (121)
32 2no2_A HIP-I, huntingtin-inter 79.2 17 0.00058 26.9 10.6 40 158-197 56-102 (107)
33 2yy0_A C-MYC-binding protein; 79.0 4.3 0.00015 26.4 5.1 30 141-170 18-47 (53)
34 2jee_A YIIU; FTSZ, septum, coi 78.9 15 0.0005 26.0 10.3 30 180-209 37-66 (81)
35 2v4h_A NF-kappa-B essential mo 78.2 19 0.00065 26.9 9.3 33 157-193 46-78 (110)
36 3i00_A HIP-I, huntingtin-inter 77.9 19 0.00066 27.2 9.2 57 150-209 16-79 (120)
37 3nmd_A CGMP dependent protein 77.5 7.8 0.00027 26.9 6.3 17 158-174 21-37 (72)
38 3iox_A AGI/II, PA; alpha helix 77.4 15 0.00053 34.2 10.1 27 172-202 68-94 (497)
39 3cve_A Homer protein homolog 1 77.2 15 0.00053 25.3 9.9 52 158-209 16-67 (72)
40 3cvf_A Homer-3, homer protein 76.8 17 0.00058 25.6 9.1 52 158-209 22-73 (79)
41 3tnu_B Keratin, type II cytosk 76.8 22 0.00074 26.8 10.3 28 176-203 88-115 (129)
42 3mq9_A Bone marrow stromal ant 75.8 14 0.0005 33.1 9.6 28 107-134 397-424 (471)
43 3azd_A Short alpha-tropomyosin 75.3 1.5 5.1E-05 26.5 1.9 30 178-207 5-34 (37)
44 3swk_A Vimentin; cytoskeleton, 74.6 20 0.00068 25.3 9.4 53 155-207 27-79 (86)
45 1g6u_A Domain swapped dimer; d 74.6 10 0.00036 23.3 5.6 13 117-129 3-15 (48)
46 4gkw_A Spindle assembly abnorm 74.0 29 0.00098 26.9 9.7 22 179-200 48-69 (167)
47 3tnu_A Keratin, type I cytoske 73.8 23 0.00079 26.7 8.9 28 176-203 90-117 (131)
48 4dzn_A Coiled-coil peptide CC- 73.7 8.1 0.00028 22.0 4.5 16 153-168 6-21 (33)
49 3ghg_A Fibrinogen alpha chain; 73.3 44 0.0015 31.4 12.0 17 197-213 175-191 (562)
50 3s4r_A Vimentin; alpha-helix, 73.2 23 0.00078 25.4 10.2 34 176-209 55-88 (93)
51 3oja_A Leucine-rich immune mol 71.8 16 0.00056 32.9 8.9 49 161-209 419-467 (487)
52 1s94_A S-syntaxin; three helix 70.5 37 0.0013 26.6 11.1 28 180-207 122-149 (180)
53 1t3j_A Mitofusin 1; coiled coi 70.1 19 0.00064 26.3 7.1 40 154-197 52-91 (96)
54 3jsv_C NF-kappa-B essential mo 69.8 12 0.00041 27.2 5.9 11 179-189 42-52 (94)
55 4h22_A Leucine-rich repeat fli 69.5 31 0.0011 25.4 9.5 46 151-196 32-77 (103)
56 1gd2_E Transcription factor PA 68.9 12 0.00042 25.6 5.6 36 157-192 30-65 (70)
57 4etp_A Kinesin-like protein KA 68.5 18 0.00061 32.7 8.2 37 154-190 8-44 (403)
58 2oto_A M protein; helical coil 68.2 25 0.00085 27.2 8.1 17 180-196 67-83 (155)
59 3tul_A Cell invasion protein S 67.2 44 0.0015 26.3 10.7 33 102-134 6-40 (158)
60 4h22_A Leucine-rich repeat fli 66.7 36 0.0012 25.1 10.3 56 154-209 28-83 (103)
61 3plt_A Sphingolipid long chain 66.3 58 0.002 27.4 11.9 41 157-197 132-174 (234)
62 2v71_A Nuclear distribution pr 65.8 53 0.0018 26.7 10.7 10 192-201 138-147 (189)
63 3m9b_A Proteasome-associated A 65.5 8.8 0.0003 32.8 5.2 22 182-203 73-94 (251)
64 3i00_A HIP-I, huntingtin-inter 65.5 41 0.0014 25.3 9.4 34 154-187 45-78 (120)
65 4ani_A Protein GRPE; chaperone 65.1 21 0.00073 29.6 7.4 38 150-187 60-97 (213)
66 2v4h_A NF-kappa-B essential mo 64.9 27 0.00092 26.0 7.1 22 187-208 86-107 (110)
67 1go4_E MAD1 (mitotic arrest de 64.8 38 0.0013 24.8 9.1 68 143-212 13-96 (100)
68 1deb_A APC protein, adenomatou 64.4 26 0.00087 22.6 7.3 40 149-188 10-49 (54)
69 3w03_C DNA repair protein XRCC 64.4 8.1 0.00028 31.5 4.6 30 179-208 154-183 (184)
70 3viq_B Mating-type switching p 63.8 29 0.00099 24.7 6.9 57 150-208 9-65 (85)
71 2ve7_C Kinetochore protein NUF 63.3 20 0.00068 30.3 7.1 16 201-216 193-208 (250)
72 3q0x_A Centriole protein; cent 62.6 28 0.00094 29.2 7.7 50 151-200 173-222 (228)
73 3s9g_A Protein hexim1; cyclin 62.2 44 0.0015 24.5 9.0 27 183-209 64-90 (104)
74 1m1j_C Fibrinogen gamma chain; 62.1 66 0.0023 29.1 10.7 49 157-205 85-133 (409)
75 1lwu_C Fibrinogen gamma chain; 62.1 21 0.00073 31.4 7.2 36 171-206 20-55 (323)
76 3efg_A Protein SLYX homolog; x 62.0 30 0.001 24.1 6.6 42 170-211 21-62 (78)
77 2efr_A General control protein 61.2 58 0.002 25.6 10.4 14 159-172 101-114 (155)
78 1t6f_A Geminin; coiled-coil, c 60.4 20 0.00067 21.4 4.5 17 156-172 7-23 (37)
79 4emc_A Monopolin complex subun 60.4 33 0.0011 27.9 7.5 36 152-187 23-58 (190)
80 4emc_A Monopolin complex subun 60.3 49 0.0017 27.0 8.5 29 149-177 27-55 (190)
81 1ci6_A Transcription factor AT 60.1 34 0.0012 22.6 6.4 19 178-196 38-56 (63)
82 2lw1_A ABC transporter ATP-bin 59.9 42 0.0014 23.5 9.1 55 150-204 23-83 (89)
83 1ses_A Seryl-tRNA synthetase; 59.8 38 0.0013 30.6 8.7 10 181-190 68-77 (421)
84 3tnu_A Keratin, type I cytoske 59.3 54 0.0018 24.6 10.4 25 179-203 86-110 (131)
85 4gkw_A Spindle assembly abnorm 59.1 13 0.00044 28.9 4.6 26 155-180 45-70 (167)
86 3bas_A Myosin heavy chain, str 58.8 45 0.0015 23.5 8.5 30 179-208 51-80 (89)
87 3v86_A De novo design helix; c 58.7 14 0.00047 20.2 3.4 18 149-166 7-24 (27)
88 3u06_A Protein claret segregat 58.5 30 0.001 31.3 7.8 44 154-197 8-51 (412)
89 1wle_A Seryl-tRNA synthetase; 57.7 74 0.0025 29.5 10.5 13 181-193 120-132 (501)
90 3o0z_A RHO-associated protein 57.6 71 0.0024 25.5 13.1 59 152-210 93-155 (168)
91 3nmd_A CGMP dependent protein 57.6 44 0.0015 23.0 7.0 12 158-169 42-53 (72)
92 3trt_A Vimentin; cytoskeleton, 57.5 39 0.0013 22.8 6.6 41 156-196 35-75 (77)
93 2inr_A DNA topoisomerase 4 sub 57.1 1.1E+02 0.0036 28.7 11.4 21 94-115 398-418 (514)
94 3bas_A Myosin heavy chain, str 56.5 49 0.0017 23.3 9.9 40 157-196 15-54 (89)
95 2ke4_A CDC42-interacting prote 56.1 55 0.0019 23.7 7.6 34 180-213 58-91 (98)
96 1t3j_A Mitofusin 1; coiled coi 55.8 56 0.0019 23.7 7.5 12 182-193 83-94 (96)
97 3swy_A Cyclic nucleotide-gated 55.1 36 0.0012 21.4 5.5 31 178-211 13-43 (46)
98 2wt7_A Proto-oncogene protein 54.5 43 0.0015 22.0 6.4 18 179-196 39-56 (63)
99 1gk4_A Vimentin; intermediate 54.5 51 0.0018 22.9 8.9 32 175-206 38-69 (84)
100 1fio_A SSO1 protein; four heli 54.5 75 0.0026 24.8 14.3 60 146-205 46-105 (196)
101 3qne_A Seryl-tRNA synthetase, 53.4 30 0.001 32.1 7.0 21 106-126 32-52 (485)
102 3l4q_C Phosphatidylinositol 3- 53.2 26 0.0009 28.1 5.7 30 179-208 19-48 (170)
103 3uul_A Utrophin; spectrin repe 53.2 55 0.0019 22.9 8.4 30 178-207 79-108 (118)
104 1x8y_A Lamin A/C; structural p 53.2 55 0.0019 22.9 8.1 30 176-205 41-70 (86)
105 4ani_A Protein GRPE; chaperone 53.0 25 0.00086 29.1 5.8 31 178-208 67-97 (213)
106 3u0c_A Invasin IPAB, 62 kDa an 52.4 90 0.0031 25.1 9.7 28 102-129 54-83 (201)
107 3jsv_C NF-kappa-B essential mo 52.3 64 0.0022 23.3 9.1 32 158-189 42-73 (94)
108 2dq0_A Seryl-tRNA synthetase; 52.1 53 0.0018 30.0 8.4 10 181-190 73-82 (455)
109 1wlq_A Geminin; coiled-coil; 2 52.0 38 0.0013 24.0 5.7 15 157-171 39-53 (83)
110 3okq_A BUD site selection prot 51.6 39 0.0013 26.3 6.3 57 145-201 31-100 (141)
111 1nkp_B MAX protein, MYC proto- 51.4 36 0.0012 23.4 5.6 30 179-208 49-78 (83)
112 3plt_A Sphingolipid long chain 50.9 1.1E+02 0.0038 25.7 9.6 30 163-192 131-160 (234)
113 3tnu_B Keratin, type II cytosk 50.7 75 0.0026 23.7 11.2 25 179-203 84-108 (129)
114 3qne_A Seryl-tRNA synthetase, 50.6 78 0.0027 29.3 9.3 15 113-127 32-46 (485)
115 2xv5_A Lamin-A/C; structural p 50.2 59 0.002 22.3 8.3 40 179-218 21-67 (74)
116 3aon_A V-type sodium ATPase su 50.1 51 0.0017 27.0 7.3 39 171-209 25-63 (217)
117 4etp_A Kinesin-like protein KA 50.0 41 0.0014 30.3 7.2 11 156-166 24-34 (403)
118 1ses_A Seryl-tRNA synthetase; 49.5 62 0.0021 29.2 8.4 11 157-167 72-82 (421)
119 1wle_A Seryl-tRNA synthetase; 49.4 72 0.0025 29.6 9.0 20 107-126 70-89 (501)
120 1uii_A Geminin; human, DNA rep 49.2 55 0.0019 23.1 6.2 28 178-205 47-74 (83)
121 1nfn_A Apolipoprotein E3; lipi 48.3 57 0.0019 26.2 7.2 56 154-209 104-161 (191)
122 2oto_A M protein; helical coil 48.0 92 0.0031 23.9 10.5 12 115-126 30-41 (155)
123 2wt7_A Proto-oncogene protein 47.4 57 0.002 21.4 6.6 29 179-207 32-60 (63)
124 2zqm_A Prefoldin beta subunit 47.1 76 0.0026 22.7 9.8 23 178-200 85-107 (117)
125 3etw_A Adhesin A; antiparallel 46.7 90 0.0031 23.5 11.5 43 158-201 46-88 (119)
126 3m91_A Proteasome-associated A 46.6 55 0.0019 20.9 6.5 33 150-189 17-49 (51)
127 2xv5_A Lamin-A/C; structural p 46.6 68 0.0023 22.0 7.5 21 178-198 37-57 (74)
128 2dq0_A Seryl-tRNA synthetase; 46.6 37 0.0013 31.0 6.5 6 107-112 31-36 (455)
129 3cvf_A Homer-3, homer protein 46.6 72 0.0025 22.3 9.7 60 143-202 14-73 (79)
130 3htk_A Structural maintenance 46.1 55 0.0019 20.8 7.3 29 157-185 27-55 (60)
131 3a5c_G V-type ATP synthase sub 46.0 63 0.0022 26.6 7.3 40 170-209 16-55 (223)
132 1go4_E MAD1 (mitotic arrest de 46.0 33 0.0011 25.1 4.8 31 179-209 14-44 (100)
133 2q6q_A Spindle POLE BODY compo 45.8 69 0.0024 21.9 7.5 6 203-208 50-55 (74)
134 1afo_A Glycophorin A; integral 45.4 16 0.00055 22.3 2.5 17 93-109 21-37 (40)
135 2lw1_A ABC transporter ATP-bin 45.4 75 0.0026 22.1 6.6 9 178-186 37-45 (89)
136 1t2k_D Cyclic-AMP-dependent tr 45.1 61 0.0021 21.0 6.1 14 180-193 39-52 (61)
137 1nlw_A MAD protein, MAX dimeri 44.9 51 0.0017 22.8 5.5 13 119-131 16-28 (80)
138 2eqb_B RAB guanine nucleotide 44.5 88 0.003 22.7 8.7 17 192-208 77-93 (97)
139 1t2k_D Cyclic-AMP-dependent tr 43.4 65 0.0022 20.8 6.5 25 180-204 32-56 (61)
140 1hs7_A Syntaxin VAM3; UP-and-D 43.2 91 0.0031 22.5 8.8 50 154-208 38-88 (97)
141 2bzb_A Conserved domain protei 42.8 17 0.00059 24.2 2.7 23 189-211 34-56 (62)
142 3uun_A Dystrophin; triple heli 42.5 83 0.0028 21.8 9.0 30 178-207 79-108 (119)
143 4e61_A Protein BIM1; EB1-like 42.2 60 0.0021 24.0 5.8 15 178-192 26-40 (106)
144 2wuj_A Septum site-determining 41.8 27 0.00091 22.7 3.4 17 192-208 35-51 (57)
145 1s1c_X RHO-associated, coiled- 41.4 38 0.0013 23.2 4.3 30 154-183 4-33 (71)
146 3sja_C Golgi to ER traffic pro 41.3 80 0.0027 21.3 6.3 27 188-214 36-62 (65)
147 3swf_A CGMP-gated cation chann 41.2 47 0.0016 23.0 4.7 17 178-194 15-31 (74)
148 4b4t_K 26S protease regulatory 40.9 37 0.0013 30.8 5.5 28 178-205 64-91 (428)
149 3ol1_A Vimentin; structural ge 40.6 1.1E+02 0.0037 22.6 8.3 64 119-189 18-81 (119)
150 3iox_A AGI/II, PA; alpha helix 40.6 1.6E+02 0.0056 27.3 9.7 90 114-207 9-106 (497)
151 1wt6_A Myotonin-protein kinase 40.4 94 0.0032 21.8 9.0 8 179-186 61-68 (81)
152 2w6b_A RHO guanine nucleotide 40.2 75 0.0026 20.7 6.5 21 146-166 14-34 (56)
153 2xcs_B DNA gyrase subunit B, D 40.1 2.6E+02 0.0087 27.2 11.3 22 94-116 581-602 (692)
154 1gk4_A Vimentin; intermediate 39.8 91 0.0031 21.5 10.4 7 191-197 71-77 (84)
155 3rrk_A V-type ATPase 116 kDa s 39.5 1E+02 0.0035 26.5 8.0 47 157-203 227-274 (357)
156 3v1a_A Computational design, M 39.3 40 0.0014 21.4 3.8 20 178-197 28-47 (48)
157 1jnm_A Proto-oncogene C-JUN; B 38.8 79 0.0027 20.5 5.5 6 182-187 41-46 (62)
158 3mov_A Lamin-B1; LMNB1, B-type 38.7 1.1E+02 0.0036 21.9 7.5 31 175-205 49-79 (95)
159 2kxh_B Peptide of FAR upstream 38.4 17 0.00057 21.0 1.7 14 55-68 9-22 (31)
160 2avr_X Adhesion A; antiparalle 37.0 1.3E+02 0.0045 22.6 11.5 43 159-202 47-89 (119)
161 1nkp_A C-MYC, MYC proto-oncoge 36.8 84 0.0029 22.0 5.7 30 179-208 54-83 (88)
162 3swy_A Cyclic nucleotide-gated 36.0 80 0.0027 19.8 5.1 30 179-208 7-36 (46)
163 3s84_A Apolipoprotein A-IV; fo 35.9 2E+02 0.0067 24.3 9.0 16 178-193 67-82 (273)
164 3lss_A Seryl-tRNA synthetase; 35.9 2E+02 0.0069 26.5 9.6 23 106-128 36-58 (484)
165 4dk0_A Putative MACA; alpha-ha 35.8 2E+02 0.0069 24.3 9.6 6 202-207 147-152 (369)
166 2nov_A DNA topoisomerase 4 sub 35.5 1.2E+02 0.004 28.3 7.9 20 94-114 374-393 (496)
167 2ve7_C Kinetochore protein NUF 35.4 38 0.0013 28.5 4.3 15 157-171 163-177 (250)
168 2wvr_A Geminin; DNA replicatio 35.2 94 0.0032 25.6 6.4 22 179-200 141-162 (209)
169 1gd2_E Transcription factor PA 35.1 96 0.0033 21.0 5.5 26 181-206 33-58 (70)
170 1m1j_B Fibrinogen beta chain; 35.1 2.7E+02 0.0092 25.6 11.6 13 193-205 177-189 (464)
171 1fxk_A Prefoldin; archaeal pro 35.0 1.2E+02 0.0039 21.3 9.7 24 184-207 79-102 (107)
172 1ez3_A Syntaxin-1A; three heli 34.9 1.3E+02 0.0043 21.7 14.4 27 180-206 91-117 (127)
173 1cxz_B Protein (PKN); protein- 34.8 1.2E+02 0.0041 21.5 6.9 31 183-213 55-85 (86)
174 3sjb_C Golgi to ER traffic pro 34.4 1.3E+02 0.0044 21.7 7.0 18 154-171 54-71 (93)
175 1uix_A RHO-associated kinase; 34.3 54 0.0018 22.5 4.1 16 182-197 16-31 (71)
176 1hjb_A Ccaat/enhancer binding 34.1 61 0.0021 23.0 4.6 20 178-197 51-70 (87)
177 1dh3_A Transcription factor CR 33.8 93 0.0032 19.9 5.7 11 180-190 39-49 (55)
178 2xdj_A Uncharacterized protein 33.8 1.2E+02 0.0041 21.2 6.2 17 178-194 49-65 (83)
179 2wvr_A Geminin; DNA replicatio 33.6 97 0.0033 25.5 6.2 22 180-201 118-139 (209)
180 1ik9_A DNA repair protein XRCC 33.5 51 0.0017 27.1 4.7 11 179-189 155-165 (213)
181 3he4_A Synzip6; heterodimeric 33.3 91 0.0031 19.6 5.9 8 182-189 43-50 (56)
182 1x79_B RAB GTPase binding effe 33.2 1.5E+02 0.0051 22.0 10.1 33 183-215 76-108 (112)
183 2dq3_A Seryl-tRNA synthetase; 33.1 88 0.003 28.2 6.6 9 158-166 77-85 (425)
184 1gs9_A Apolipoprotein E, APOE4 33.0 1.3E+02 0.0044 23.6 6.8 55 154-208 104-160 (165)
185 3ilw_A DNA gyrase subunit A; D 32.8 3E+02 0.01 25.4 11.8 22 94-116 360-381 (470)
186 3mq9_A Bone marrow stromal ant 32.8 1.1E+02 0.0037 27.2 7.2 11 106-116 379-389 (471)
187 2c0s_A Conserved domain protei 32.8 60 0.002 21.7 4.1 18 189-206 34-51 (64)
188 2wt7_B Transcription factor MA 32.7 62 0.0021 23.2 4.4 32 157-188 56-87 (90)
189 1uii_A Geminin; human, DNA rep 32.7 1E+02 0.0035 21.7 5.5 15 157-171 47-61 (83)
190 2zqm_A Prefoldin beta subunit 32.2 1.4E+02 0.0046 21.2 6.7 28 180-207 80-107 (117)
191 2b5u_A Colicin E3; high resolu 32.0 3.2E+02 0.011 25.5 10.6 45 158-202 316-360 (551)
192 1dkg_A Nucleotide exchange fac 31.6 1E+02 0.0036 24.8 6.2 31 157-187 43-77 (197)
193 3m9b_A Proteasome-associated A 30.8 98 0.0034 26.2 6.1 25 146-170 58-82 (251)
194 3haj_A Human pacsin2 F-BAR; pa 30.6 2.5E+02 0.0086 25.3 9.4 42 156-197 185-226 (486)
195 3cve_A Homer protein homolog 1 29.6 1.4E+02 0.0046 20.5 9.8 51 146-196 11-61 (72)
196 2ve7_A Kinetochore protein HEC 29.2 58 0.002 28.2 4.6 23 144-166 187-209 (315)
197 2nrj_A HBL B protein; enteroto 29.1 97 0.0033 27.1 6.1 19 176-194 175-193 (346)
198 3ra3_B P2F; coiled coil domain 29.1 71 0.0024 17.5 3.2 18 154-171 5-22 (28)
199 2l7b_A Apolipoprotein E, APO-E 29.1 1.5E+02 0.0053 25.5 7.2 56 154-209 112-169 (307)
200 2efk_A CDC42-interacting prote 29.1 2.4E+02 0.0081 23.1 10.8 94 105-205 121-216 (301)
201 2dq3_A Seryl-tRNA synthetase; 28.4 85 0.0029 28.3 5.7 25 178-202 76-100 (425)
202 2rjz_A PILO protein; structura 28.2 51 0.0017 25.3 3.6 19 178-196 16-34 (147)
203 3swf_A CGMP-gated cation chann 28.1 1.2E+02 0.0041 20.9 5.1 24 179-202 9-32 (74)
204 3vem_A Helicase protein MOM1; 28.0 1.9E+02 0.0064 21.6 7.4 10 191-200 75-84 (115)
205 3rvy_A ION transport protein; 28.0 44 0.0015 27.8 3.5 24 93-116 214-238 (285)
206 1u7l_A Vacuolar ATP synthase s 27.8 80 0.0027 28.5 5.3 43 179-221 131-173 (392)
207 3lss_A Seryl-tRNA synthetase; 27.7 2.4E+02 0.0082 26.0 8.7 6 117-122 54-59 (484)
208 2x3v_A Syndapin I, protein kin 27.6 2.7E+02 0.0094 23.3 10.6 41 156-196 183-223 (337)
209 4ad8_A DNA repair protein RECN 27.5 1.5E+02 0.0052 26.8 7.3 27 179-205 209-241 (517)
210 3qwe_A GMIP, GEM-interacting p 27.5 1.8E+02 0.0063 24.8 7.3 12 193-204 142-153 (279)
211 1jcd_A Major outer membrane li 27.3 1.2E+02 0.0043 19.3 7.2 7 156-162 18-24 (52)
212 2fxo_A Myosin heavy chain, car 27.1 1.9E+02 0.0066 21.4 11.6 42 171-212 84-125 (129)
213 4e61_A Protein BIM1; EB1-like 26.4 1.9E+02 0.0066 21.2 6.4 11 156-166 18-28 (106)
214 1fxk_A Prefoldin; archaeal pro 26.3 1.7E+02 0.0057 20.4 6.4 20 178-197 80-99 (107)
215 2xnx_M M protein, M1-BC1; cell 26.3 80 0.0027 24.6 4.3 81 142-222 40-132 (146)
216 2zxx_A Geminin; coiled-coil, c 26.2 1.6E+02 0.0056 20.5 5.5 17 156-172 34-50 (79)
217 3arc_F Cytochrome B559 subunit 25.4 53 0.0018 20.2 2.5 15 22-36 13-28 (44)
218 3ljc_A ATP-dependent protease 25.4 1.3E+02 0.0046 24.5 6.0 29 180-209 222-250 (252)
219 3r2p_A Apolipoprotein A-I; amp 25.3 1.5E+02 0.0051 23.3 6.1 33 158-190 113-146 (185)
220 3u06_A Protein claret segregat 25.3 1.9E+02 0.0064 26.0 7.4 10 157-166 25-34 (412)
221 3lay_A Zinc resistance-associa 25.3 2.5E+02 0.0087 22.2 10.1 55 155-209 84-142 (175)
222 2v66_B Nuclear distribution pr 25.2 2.1E+02 0.0071 21.1 11.8 20 146-165 39-58 (111)
223 3he5_B Synzip2; heterodimeric 25.0 1.3E+02 0.0044 18.6 6.7 21 178-198 25-45 (52)
224 2f1m_A Acriflavine resistance 24.7 2.8E+02 0.0094 22.4 10.3 33 180-212 101-133 (277)
225 2xzr_A Immunoglobulin-binding 24.6 2E+02 0.007 20.9 11.0 40 157-196 63-102 (114)
226 2ocy_A RAB guanine nucleotide 24.6 2.5E+02 0.0086 21.9 12.2 24 108-131 7-30 (154)
227 3q0x_A Centriole protein; cent 24.3 3E+02 0.01 22.8 8.0 50 154-203 169-218 (228)
228 2w6b_A RHO guanine nucleotide 24.2 1.5E+02 0.0052 19.2 6.4 26 145-170 6-31 (56)
229 2zxx_A Geminin; coiled-coil, c 24.2 1.3E+02 0.0043 21.0 4.7 13 154-166 39-51 (79)
230 1cii_A Colicin IA; bacteriocin 24.0 4.2E+02 0.014 24.7 9.2 66 141-206 334-399 (602)
231 3m91_A Proteasome-associated A 23.9 1.4E+02 0.005 18.9 6.6 10 156-165 37-46 (51)
232 1fxk_C Protein (prefoldin); ar 23.8 2.1E+02 0.0074 20.8 7.2 24 105-128 23-46 (133)
233 3caz_A BAR protein; thermo-aci 23.6 1.1E+02 0.0039 25.1 5.0 12 179-190 114-125 (294)
234 2dgc_A Protein (GCN4); basic d 23.6 1.5E+02 0.0052 19.4 4.8 29 179-207 32-60 (63)
235 2j5u_A MREC protein; bacterial 23.4 44 0.0015 28.1 2.6 18 192-209 44-61 (255)
236 1qzv_F Plant photosystem I: su 23.2 45 0.0015 25.7 2.3 39 155-197 19-57 (154)
237 1ci6_A Transcription factor AT 23.2 1.6E+02 0.0055 19.2 6.4 14 153-166 34-47 (63)
238 4b4t_K 26S protease regulatory 23.1 1.3E+02 0.0045 27.1 5.9 30 179-208 58-87 (428)
239 3twe_A Alpha4H; unknown functi 22.8 1E+02 0.0035 16.7 3.4 12 156-167 8-19 (27)
240 1use_A VAsp, vasodilator-stimu 22.6 1.5E+02 0.005 18.5 5.0 13 160-172 19-31 (45)
241 3vjf_A WA20; protein design, d 22.5 2E+02 0.0069 20.0 6.2 44 157-200 8-51 (102)
242 1f5n_A Interferon-induced guan 22.5 4.9E+02 0.017 24.4 10.7 19 188-206 564-582 (592)
243 3fx0_A NF-kappa-B essential mo 22.3 1.3E+02 0.0045 21.7 4.6 41 157-201 39-79 (96)
244 3m48_A General control protein 22.2 1.1E+02 0.0039 17.8 3.4 9 154-162 19-27 (33)
245 1l8d_A DNA double-strand break 22.2 2.1E+02 0.0072 20.1 9.1 16 179-194 87-102 (112)
246 1lrz_A FEMA, factor essential 22.1 2.9E+02 0.01 24.2 8.0 18 155-172 253-270 (426)
247 3a7o_A Autophagy protein 16; c 22.1 2E+02 0.0067 19.7 8.2 44 154-204 30-73 (75)
248 1avy_A Fibritin, gpwac M; bact 22.1 1.9E+02 0.0067 19.7 5.4 25 160-184 19-43 (74)
249 3kqg_A Langerin, C-type lectin 21.8 1.2E+02 0.0039 23.0 4.6 8 180-187 26-33 (182)
250 2w6a_A ARF GTPase-activating p 21.6 1.8E+02 0.0062 19.2 7.1 38 171-208 21-58 (63)
251 2j5u_A MREC protein; bacterial 21.2 73 0.0025 26.7 3.5 16 150-165 27-42 (255)
252 2k48_A Nucleoprotein; viral pr 21.0 2.5E+02 0.0086 20.6 9.7 22 154-175 40-61 (107)
253 4eah_A Formin-like protein 3, 20.9 2.8E+02 0.0094 24.6 7.5 19 154-172 292-310 (402)
254 2lf0_A Uncharacterized protein 20.8 2.7E+02 0.0093 20.9 6.5 19 144-162 38-56 (123)
255 2efl_A Formin-binding protein 20.2 3.5E+02 0.012 22.0 9.8 62 144-205 104-165 (305)
256 2ve7_A Kinetochore protein HEC 20.2 4.1E+02 0.014 22.7 9.2 24 149-172 185-208 (315)
No 1
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=95.64 E-value=0.19 Score=35.53 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhccc
Q 027451 155 KLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWR 213 (223)
Q Consensus 155 ~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~ 213 (223)
....+.++.+++..++....++.++.+|++...+++.++|+..+.....+.+|...+.+
T Consensus 19 ~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~ 77 (81)
T 1ic2_A 19 LDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKK 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888888888899999999999999999999999999999988876654
No 2
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=95.39 E-value=0.2 Score=36.94 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhccc
Q 027451 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWR 213 (223)
Q Consensus 156 ~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~ 213 (223)
...+.++.+++..+....+++.++.+|+++..+++.++|+..+.....+..+...+.+
T Consensus 23 d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~ 80 (101)
T 3u59_A 23 DRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKK 80 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777888899999999999999999888888777777655544
No 3
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.20 E-value=0.22 Score=38.98 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=16.3
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
..+.++++.+.+.++++.|..+..+|+..+
T Consensus 104 k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 104 KAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555554443
No 4
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.84 E-value=0.19 Score=39.26 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhh
Q 027451 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSL 210 (223)
Q Consensus 158 ~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~ 210 (223)
.+.|+.+++.+++++..-..++..++-+.+++.++...+.++++.|+.++...
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444333333455556666666666666666666666555443
No 5
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=94.84 E-value=0.36 Score=35.62 Aligned_cols=58 Identities=19% Similarity=0.166 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhcccc
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRL 214 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~~ 214 (223)
..+.++.+++..+.+...++.++..|.+...++..+.|+..+.....+.++...+.+.
T Consensus 24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~ 81 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENA 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667667777777788888888888898888888888777777776655443
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.67 E-value=0.099 Score=58.67 Aligned_cols=61 Identities=15% Similarity=0.266 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhcccccC
Q 027451 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSH 216 (223)
Q Consensus 156 ~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~~~~ 216 (223)
+++++++.+++..+.++..+++.+..+..+.+.++.+|+....|.++++.+.+....|..+
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~r 2074 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDR 2074 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888888899999999999999999999999999888877666543
No 7
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=94.37 E-value=0.58 Score=34.28 Aligned_cols=63 Identities=17% Similarity=0.317 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhcccccC
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSH 216 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~~~~ 216 (223)
+.+++++|+++=...+.++...+.+...|..|-+..-++|..+.-+.-..++++.+.+.++.+
T Consensus 23 L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~ 85 (96)
T 3q8t_A 23 LIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRY 85 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555556666666666666666655555566666666555543
No 8
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=93.64 E-value=0.79 Score=36.37 Aligned_cols=63 Identities=11% Similarity=0.211 Sum_probs=48.4
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 027451 144 IKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (223)
Q Consensus 144 ~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~ 206 (223)
...+..+...+..++.+|+.+++.+.+.+.....++.+|.-|..-++..-.+|.+||+.|=++
T Consensus 70 I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666677788888989998888888888888888888888888888888888775433
No 9
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=93.28 E-value=0.16 Score=33.40 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=21.8
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
|+++||..-+.|...|+.|.+++++++.++..
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56666666666666777777777777776654
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.53 E-value=2.3 Score=39.51 Aligned_cols=54 Identities=22% Similarity=0.251 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 156 ~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
.++++.+++++++.+++...+.+.+.++++.+...+...++.+|.++++.++..
T Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 523 RETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555666666666666666666666666655444443
No 11
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=92.34 E-value=2 Score=30.52 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=34.4
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 147 LEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 147 ~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
..++|+-+.-|+++||.+-.... .+.+.++...+.+..|..+|.+|++.-+.++.
T Consensus 18 avdtI~lLqmEieELKekN~~L~-------~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 18 AIDTITLLQMEIEELKEKNNSLS-------QEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444545555555554444333 34667777777788888888888877666654
No 12
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=92.27 E-value=1.3 Score=32.44 Aligned_cols=64 Identities=20% Similarity=0.242 Sum_probs=35.1
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 145 KALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 145 ~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
++...++..+..+=..|-.+|+..+++-.....++.+++.+++.+..+-.+.-.+|+..+-++.
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~ 70 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQL 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555555555555555666666666665555555556665554443
No 13
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=92.20 E-value=2.2 Score=32.19 Aligned_cols=15 Identities=27% Similarity=0.257 Sum_probs=6.7
Q ss_pred HHHhHhhHHHHHHHH
Q 027451 182 LRKQSEGFLFEYDRL 196 (223)
Q Consensus 182 LKkQae~l~~EYDrL 196 (223)
|..|+++|..|-+=|
T Consensus 88 LE~~iesL~eEl~FL 102 (119)
T 3ol1_A 88 LERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 14
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=92.09 E-value=2.2 Score=32.31 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=19.1
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhcccccCC
Q 027451 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHS 217 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~~~~~ 217 (223)
++..|+.+..+...|-.||..+++.+.-.+..-++ +++|
T Consensus 79 EI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~~-~~~~ 117 (121)
T 3mq7_A 79 EITTLNHKLQDASAEVERLRRENQVLSVRIADKKY-YPSS 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhccc-Cccc
Confidence 34555555555566666676677766666655443 4443
No 15
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=92.05 E-value=0.67 Score=35.69 Aligned_cols=99 Identities=16% Similarity=0.234 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 027451 109 LHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTT----LKLKLKDLESELETKSKEANAAETNAVALRK 184 (223)
Q Consensus 109 ~~~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~----l~~e~~~Lk~el~~~~~el~~~~~d~~aLKk 184 (223)
+.+++.+|-..+..++++....++.++.....+........+++. ..-.+++|+-+.++.+.+++-...-...=|.
T Consensus 4 vtSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~eEKr 83 (130)
T 3cl3_D 4 ASGSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKR 83 (130)
T ss_dssp -----------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666555443333332110001112222223222 2235677777777777777665555566788
Q ss_pred hHhhHHHHHHHHHHHHHHHHHhH
Q 027451 185 QSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 185 Qae~l~~EYDrL~~e~~~l~~~l 207 (223)
....|+-.|+.|..||++.-+..
T Consensus 84 kLAqLQ~AY~~LfqeYd~~lK~~ 106 (130)
T 3cl3_D 84 KLAQLQVAYHQLFQEYDNHIKSS 106 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998844333
No 16
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=91.59 E-value=1.7 Score=36.81 Aligned_cols=47 Identities=17% Similarity=0.143 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 027451 160 DLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (223)
Q Consensus 160 ~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~ 206 (223)
.|.++++..++++...+.++..+-.+.+.+..+.+.+.++...++..
T Consensus 94 aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~ 140 (256)
T 3na7_A 94 SLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKL 140 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444333333444444444444444444444444444433333
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.59 E-value=0.69 Score=47.22 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=16.5
Q ss_pred HHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027451 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (223)
Q Consensus 171 el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~ 204 (223)
++...+.+++.++++.+.+.+|++.+.+++++++
T Consensus 985 ~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 985 RVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555544444443
No 18
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=89.57 E-value=3.5 Score=29.24 Aligned_cols=54 Identities=24% Similarity=0.283 Sum_probs=41.3
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHH
Q 027451 146 ALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEE 199 (223)
Q Consensus 146 ~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e 199 (223)
.+.-|+..++-.|.+++.|=-.-+++|++...++..|+.|.++-..|..||.++
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344455666667777777777777788888889999999999999888887654
No 19
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=89.54 E-value=3.8 Score=28.34 Aligned_cols=55 Identities=24% Similarity=0.149 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 155 KLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 155 ~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
..-+..|+++|+.++.++..-+.-+.-=-|-+|.|+.|.=.+.-|++-|+++++.
T Consensus 17 ~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~ 71 (75)
T 3a7o_A 17 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSD 71 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHH
Confidence 3456677888888887776655433333355677777777777788888888764
No 20
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=89.42 E-value=4.9 Score=29.38 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHH
Q 027451 157 KLKDLESELETKSKEANAAETNAV 180 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~ 180 (223)
++..|+..+...+.++.+++..+.
T Consensus 45 Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 45 DIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344333333333333333333
No 21
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=87.33 E-value=11 Score=30.85 Aligned_cols=22 Identities=5% Similarity=-0.031 Sum_probs=12.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHhH
Q 027451 186 SEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 186 ae~l~~EYDrL~~e~~~l~~~l 207 (223)
...+++|...|.+.+..++..+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~i 111 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYV 111 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666655555554443
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.28 E-value=3.1 Score=38.56 Aligned_cols=61 Identities=13% Similarity=0.046 Sum_probs=41.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 148 EDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 148 ~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
..++....+++++.+.+++..+++....+...+..|+|.+.+..|-+.+..|..++.++++
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 522 LRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455556666666666666666666667777777777777777777777777766665
No 23
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=86.99 E-value=5.6 Score=28.72 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 027451 106 IDRLHHYIRELRIRRKTMEAIKN 128 (223)
Q Consensus 106 I~R~~~li~~l~~~~~~~~al~k 128 (223)
-+|+.++|.+...++.+...+..
T Consensus 15 NdRlAsyIdKVR~LEqqN~~Le~ 37 (93)
T 3s4r_A 15 NDRFANLIDKVRFLEQQNKILLA 37 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777766555543
No 24
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=86.45 E-value=7.6 Score=28.20 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 027451 157 KLKDLESELETKSKEANAAETNAVALR 183 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLK 183 (223)
++..|+..+...+.++..++..+...+
T Consensus 45 ei~sL~kKiq~lE~eld~~~e~l~~a~ 71 (101)
T 3u59_A 45 EQQGLQKKLKGTEDEVEKYSESVKEAQ 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344434333333333333333333
No 25
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=85.86 E-value=3.6 Score=28.77 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=9.7
Q ss_pred hhHHHHHHHhHhhHHHHHHHHHHHHH
Q 027451 176 ETNAVALRKQSEGFLFEYDRLLEENQ 201 (223)
Q Consensus 176 ~~d~~aLKkQae~l~~EYDrL~~e~~ 201 (223)
+.++....+.......|++.|....+
T Consensus 26 e~~l~~~e~~~~~~E~ev~~L~kKiq 51 (81)
T 1ic2_A 26 EADKKAAEERSKQLEDELVALQKKLK 51 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 26
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=85.53 E-value=41 Score=38.39 Aligned_cols=44 Identities=16% Similarity=0.085 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027451 162 ESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (223)
Q Consensus 162 k~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~ 205 (223)
+.++++.+.++..+++.+++.+.+...++..-+.|.++|++...
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ 2056 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIR 2056 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666666666666666667666665443
No 27
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=83.61 E-value=15 Score=29.09 Aligned_cols=39 Identities=23% Similarity=0.211 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHH
Q 027451 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYD 194 (223)
Q Consensus 156 ~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYD 194 (223)
.+++.|...++..+....-|+..+.-|.+.++.+..+.+
T Consensus 77 eqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~ 115 (155)
T 2efr_A 77 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555544444444555555555554444433
No 28
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=83.38 E-value=11 Score=29.77 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=9.4
Q ss_pred HHHHHHHhHhhHHHHHHHH
Q 027451 178 NAVALRKQSEGFLFEYDRL 196 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL 196 (223)
.+..+......+++|++.|
T Consensus 111 q~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 111 ENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555433
No 29
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=83.36 E-value=19 Score=30.15 Aligned_cols=17 Identities=12% Similarity=-0.035 Sum_probs=6.3
Q ss_pred hHHHHHHHhHhhHHHHH
Q 027451 177 TNAVALRKQSEGFLFEY 193 (223)
Q Consensus 177 ~d~~aLKkQae~l~~EY 193 (223)
..++.++...+....++
T Consensus 132 ~~l~~~~~~l~~~~~~~ 148 (256)
T 3na7_A 132 KEMLELEKLALELESLV 148 (256)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 30
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=81.81 E-value=2.2 Score=30.65 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 027451 188 GFLFEYDRLLEENQNLRNQ 206 (223)
Q Consensus 188 ~l~~EYDrL~~e~~~l~~~ 206 (223)
...+.|=+++-+||++++-
T Consensus 38 ~~~~~hI~~Lh~YNeiKD~ 56 (85)
T 3viq_B 38 QTVQKHIDLLHTYNEIRDI 56 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 3344555566666665543
No 31
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=79.48 E-value=13 Score=28.08 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHH----HHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 027451 105 MIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTT----LKLKLKDLESELETKSKEANAAETNAV 180 (223)
Q Consensus 105 vI~R~~~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~----l~~e~~~Lk~el~~~~~el~~~~~d~~ 180 (223)
|=+.++.+=.+|-..++.+.....|+.+-.. ....+.+.+.. -.+.+++|+.||+....+|..+.++++
T Consensus 23 CrN~T~lLq~qLTqAQe~l~~~eaQAaTCNq-------TV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~e 95 (121)
T 3mq7_A 23 ARNVTHLLQQELTEAQKGFQDVEAQAATANH-------TVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 95 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666666655555555432221 11111111111 122366677777777777777777788
Q ss_pred HHHHhHhhHH
Q 027451 181 ALRKQSEGFL 190 (223)
Q Consensus 181 aLKkQae~l~ 190 (223)
-|+++.+-+.
T Consensus 96 rlr~~~~~~~ 105 (121)
T 3mq7_A 96 RLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHhhchhhh
Confidence 8888776554
No 32
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=79.22 E-value=17 Score=26.88 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHH-------hhhHHHHHHHhHhhHHHHHHHHH
Q 027451 158 LKDLESELETKSKEANA-------AETNAVALRKQSEGFLFEYDRLL 197 (223)
Q Consensus 158 ~~~Lk~el~~~~~el~~-------~~~d~~aLKkQae~l~~EYDrL~ 197 (223)
++.++.+|+.+..++.. .+.+-..+.++..++.+|.|.|.
T Consensus 56 le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~ 102 (107)
T 2no2_A 56 LESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666654444332 22333344445555555555543
No 33
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=78.98 E-value=4.3 Score=26.38 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=15.6
Q ss_pred hHHHHHhHHHhHHHHHHHHHHHHHHHHHHH
Q 027451 141 SEEIKALEDQMTTLKLKLKDLESELETKSK 170 (223)
Q Consensus 141 ~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~ 170 (223)
..+.+++..++++++.+++.|+.++++...
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554433
No 34
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=78.89 E-value=15 Score=26.02 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=12.8
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 180 VALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 180 ~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
.+|..+.+.+...-+.|-.|+++|+.+...
T Consensus 37 ~~L~~e~~e~~~~~~~L~~en~qLk~E~~~ 66 (81)
T 2jee_A 37 NSLSQEVQNAQHQREELERENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 333333333333333444455555444443
No 35
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=78.16 E-value=19 Score=26.88 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHH
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEY 193 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EY 193 (223)
++++|+.++..+++++. .+.-|+.|++=....|
T Consensus 46 ~idelk~ei~q~~~~lE----~I~vLkaQv~IY~~DF 78 (110)
T 2v4h_A 46 LIDKLKEEAEQHKIVME----TVPVLKAQADIYKADF 78 (110)
T ss_dssp HHHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 44445555554444332 2555566655544444
No 36
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=77.91 E-value=19 Score=27.17 Aligned_cols=57 Identities=16% Similarity=0.263 Sum_probs=37.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHH-------HHHHHHHHHhHhh
Q 027451 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRL-------LEENQNLRNQLQS 209 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL-------~~e~~~l~~~l~~ 209 (223)
.|+.|..+++.|+.+++...-|- ..-+..|+.|+..|+.|.+.- ..|++.|+.+++.
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~---q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTES---QRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45557777777777777665543 335778888888888777643 4456667766653
No 37
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=77.52 E-value=7.8 Score=26.87 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027451 158 LKDLESELETKSKEANA 174 (223)
Q Consensus 158 ~~~Lk~el~~~~~el~~ 174 (223)
+.+|+..++.+..++..
T Consensus 21 i~eLq~~L~~K~eELr~ 37 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQ 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555554433
No 38
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=77.44 E-value=15 Score=34.19 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=14.2
Q ss_pred HHHhhhHHHHHHHhHhhHHHHHHHHHHHHHH
Q 027451 172 ANAAETNAVALRKQSEGFLFEYDRLLEENQN 202 (223)
Q Consensus 172 l~~~~~d~~aLKkQae~l~~EYDrL~~e~~~ 202 (223)
+.+=++++++-+++ .++|+.-+..|+.
T Consensus 68 l~kY~~dlakY~~~----~AeY~~kl~aYe~ 94 (497)
T 3iox_A 68 LAKYQADLAKYQKD----LADYPVKLKAYED 94 (497)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 33345556666655 4555555555544
No 39
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=77.16 E-value=15 Score=25.33 Aligned_cols=52 Identities=25% Similarity=0.294 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 158 ~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
+..|+..+...+..+..+..+-+.++...+.+..-.|.-..|...++..+++
T Consensus 16 N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 16 NKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344444444444444444467888888888888888888888888888765
No 40
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=76.81 E-value=17 Score=25.58 Aligned_cols=52 Identities=21% Similarity=0.154 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 158 ~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
+..|+..+...+..+..+..+-+.++...+.+..-.|.-..|...++..+++
T Consensus 22 N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 22 NAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344444444444444444467788888888888888888888888888764
No 41
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=76.76 E-value=22 Score=26.79 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=14.6
Q ss_pred hhHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 027451 176 ETNAVALRKQSEGFLFEYDRLLEENQNL 203 (223)
Q Consensus 176 ~~d~~aLKkQae~l~~EYDrL~~e~~~l 203 (223)
+.++..+|...+....||..|++=.-.|
T Consensus 88 E~eL~~~r~e~~~ql~EYq~LlnvKl~L 115 (129)
T 3tnu_B 88 EEALQKAKQDMARLLREYQELMNTKLAL 115 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555666666665443333
No 42
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=75.82 E-value=14 Score=33.14 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc
Q 027451 107 DRLHHYIRELRIRRKTMEAIKNQSRGFE 134 (223)
Q Consensus 107 ~R~~~li~~l~~~~~~~~al~kQa~~~~ 134 (223)
++...|-++|..++++...+.+|+.+..
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATAN 424 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcc
Confidence 5566667777778888777777766543
No 43
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=75.29 E-value=1.5 Score=26.51 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=22.5
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
.++++|+.+.+++.+=|.+.++-..++.++
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467778888888888888877777777776
No 44
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=74.64 E-value=20 Score=25.35 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 155 KLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 155 ~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
...+++++...+.--..-..+|+|+.+|||-.....-.=-.|-.+.+.|++.+
T Consensus 27 ~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 27 AEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444333332223345677888888877665333333333333444433
No 45
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=74.60 E-value=10 Score=23.28 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhc
Q 027451 117 RIRRKTMEAIKNQ 129 (223)
Q Consensus 117 ~~~~~~~~al~kQ 129 (223)
+.++.++.+++++
T Consensus 3 aalkselqalkke 15 (48)
T 1g6u_A 3 AALKSELQALKKE 15 (48)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 4455566666653
No 46
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=73.97 E-value=29 Score=26.90 Aligned_cols=22 Identities=23% Similarity=0.150 Sum_probs=8.4
Q ss_pred HHHHHHhHhhHHHHHHHHHHHH
Q 027451 179 AVALRKQSEGFLFEYDRLLEEN 200 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~ 200 (223)
++-|+|.-.--++|.-+|-.|+
T Consensus 48 VDQlqKRn~~HQKEi~~Lrae~ 69 (167)
T 4gkw_A 48 VDQLQKRNVAHQKEIGKLRAEL 69 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 3333333333334444443333
No 47
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.81 E-value=23 Score=26.72 Aligned_cols=28 Identities=32% Similarity=0.322 Sum_probs=15.6
Q ss_pred hhHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 027451 176 ETNAVALRKQSEGFLFEYDRLLEENQNL 203 (223)
Q Consensus 176 ~~d~~aLKkQae~l~~EYDrL~~e~~~l 203 (223)
+.++..+|...+....||..|++=.-.|
T Consensus 90 E~eL~~~r~em~~ql~EYq~Ll~vKl~L 117 (131)
T 3tnu_A 90 EEQLAQLRCEMEQQNQEYKILLDVKTRL 117 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666443333
No 48
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=73.70 E-value=8.1 Score=22.05 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 027451 153 TLKLKLKDLESELETK 168 (223)
Q Consensus 153 ~l~~e~~~Lk~el~~~ 168 (223)
.+++|+..|++|+...
T Consensus 6 alkqeiaalkkeiaal 21 (33)
T 4dzn_A 6 ALKQEIAALKKEIAAL 21 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 49
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=73.31 E-value=44 Score=31.43 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=12.0
Q ss_pred HHHHHHHHHhHhhhccc
Q 027451 197 LEENQNLRNQLQSLDWR 213 (223)
Q Consensus 197 ~~e~~~l~~~l~~~~~~ 213 (223)
.+.|+.+|+||+..+..
T Consensus 175 ~~sY~~~QKQLeQv~a~ 191 (562)
T 3ghg_A 175 LKDYEDQQKQLEQVIAK 191 (562)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhhc
Confidence 35678888888866544
No 50
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=73.19 E-value=23 Score=25.40 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=24.3
Q ss_pred hhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 176 ETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 176 ~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
+..+..|++|++.+..+-.++.-|..+++..+..
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888888877777777777666665543
No 51
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=71.81 E-value=16 Score=32.92 Aligned_cols=49 Identities=18% Similarity=0.064 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 161 LESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 161 Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
.+....+.+.+..+++.+.+..+.+.+.+.+|-+|+.++.+++..++..
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 419 YEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 3333333444555566677777777777777777777777666655543
No 52
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=70.52 E-value=37 Score=26.63 Aligned_cols=28 Identities=4% Similarity=0.036 Sum_probs=23.0
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 180 VALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 180 ~aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
-.-+.|..+|.+.|-.++.+|+.+|..-
T Consensus 122 Rir~~q~~~L~~kf~~~m~~yq~~q~~y 149 (180)
T 1s94_A 122 RIRKTQYSTISRKFVEVMSDYNTTQIDY 149 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999887653
No 53
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=70.14 E-value=19 Score=26.28 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHH
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLL 197 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~ 197 (223)
+..|+++|++++...+ .+......||..+..|..|-++-.
T Consensus 52 L~~EI~~L~~eI~~LE----~iqs~aK~LRnKA~~L~~eLe~F~ 91 (96)
T 1t3j_A 52 LEEEIARLSKEIDQLE----KMQNNSKLLRNKAVQLESELENFS 91 (96)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344555555555222 233345555655555555555443
No 54
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=69.78 E-value=12 Score=27.22 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=4.4
Q ss_pred HHHHHHhHhhH
Q 027451 179 AVALRKQSEGF 189 (223)
Q Consensus 179 ~~aLKkQae~l 189 (223)
+.-|+.|++=.
T Consensus 42 i~vLk~Qv~IY 52 (94)
T 3jsv_C 42 VPVLKAQADIY 52 (94)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 55
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=69.47 E-value=31 Score=25.41 Aligned_cols=46 Identities=17% Similarity=0.259 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHH
Q 027451 151 MTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRL 196 (223)
Q Consensus 151 ~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL 196 (223)
++.++..+++++..+....++.+-.-.+++.+|.+...++.+++.|
T Consensus 32 VdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 32 VDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333333334566666555555555444
No 56
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=68.88 E-value=12 Score=25.58 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHH
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFE 192 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~E 192 (223)
.+++|+.++...+........+.+.|+.|...+..|
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555544444433333333444555554444443
No 57
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=68.47 E-value=18 Score=32.67 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHH
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFL 190 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~ 190 (223)
+.++++.|+.+.++.+.+++.++.+++.++.+...-+
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEE 44 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555444333
No 58
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=68.21 E-value=25 Score=27.24 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=7.6
Q ss_pred HHHHHhHhhHHHHHHHH
Q 027451 180 VALRKQSEGFLFEYDRL 196 (223)
Q Consensus 180 ~aLKkQae~l~~EYDrL 196 (223)
+.|++..+++..+|+.+
T Consensus 67 ~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 67 KDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444445333
No 59
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=67.25 E-value=44 Score=26.25 Aligned_cols=33 Identities=9% Similarity=0.212 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHhcccccc
Q 027451 102 LAFMIDRLHHYIRE--LRIRRKTMEAIKNQSRGFE 134 (223)
Q Consensus 102 L~lvI~R~~~li~~--l~~~~~~~~al~kQa~~~~ 134 (223)
|.+++-+++.+|.+ +-.++..++....++.+.+
T Consensus 6 LTlLlG~l~~l~G~~Sl~qL~nrla~~~am~~sqq 40 (158)
T 3tul_A 6 LTLLLGKLMTLLGDVSLSQLESRLAVWQAMIESQK 40 (158)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34556667777763 4456666666654444333
No 60
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=66.67 E-value=36 Score=25.07 Aligned_cols=56 Identities=11% Similarity=0.050 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
+.=+|+-||..+++.++.+.....+..--.+..+.+....+.|..+...++.++..
T Consensus 28 l~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 28 FMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888887777655555555555555555555566666666666666543
No 61
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=66.35 E-value=58 Score=27.37 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhH--hhHHHHHHHHH
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQS--EGFLFEYDRLL 197 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQa--e~l~~EYDrL~ 197 (223)
++..|++||...+.+...+|+.+..+|-|. |.+.-.++-+.
T Consensus 132 kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~ 174 (234)
T 3plt_A 132 KIPVLEQELVRAEAESLVAEAQLSNITREKLKAAYSYMFDSLR 174 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777666653 45555566653
No 62
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=65.83 E-value=53 Score=26.70 Aligned_cols=10 Identities=20% Similarity=0.444 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 027451 192 EYDRLLEENQ 201 (223)
Q Consensus 192 EYDrL~~e~~ 201 (223)
-||...+.+.
T Consensus 138 kln~aiEr~a 147 (189)
T 2v71_A 138 RLNQAIERNA 147 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 63
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=65.53 E-value=8.8 Score=32.76 Aligned_cols=22 Identities=23% Similarity=0.060 Sum_probs=9.6
Q ss_pred HHHhHhhHHHHHHHHHHHHHHH
Q 027451 182 LRKQSEGFLFEYDRLLEENQNL 203 (223)
Q Consensus 182 LKkQae~l~~EYDrL~~e~~~l 203 (223)
|+.+...+.+|..+|.+|.++|
T Consensus 73 L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 73 LMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444
No 64
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=65.52 E-value=41 Score=25.31 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHh
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSE 187 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae 187 (223)
+...+..|+.++.........|..+.+-|+.+.+
T Consensus 45 l~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 45 LKGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555444433333344444444444
No 65
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=65.13 E-value=21 Score=29.55 Aligned_cols=38 Identities=13% Similarity=0.250 Sum_probs=25.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHh
Q 027451 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSE 187 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae 187 (223)
+++.+.+++++|+.++++.+..+.++.+|.+.+|+.++
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~ 97 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTR 97 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777777777777777777777776554
No 66
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=64.93 E-value=27 Score=26.04 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhHh
Q 027451 187 EGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 187 e~l~~EYDrL~~e~~~l~~~l~ 208 (223)
|.++.|-++|.++...||.+++
T Consensus 86 Ekl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 86 EKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555543
No 67
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=64.84 E-value=38 Score=24.76 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=34.9
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHH----h------------hhHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 027451 143 EIKALEDQMTTLKLKLKDLESELETKSKEANA----A------------ETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (223)
Q Consensus 143 ~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~----~------------~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~ 206 (223)
+...+..+++++..|.++|..+++..+-++.. . ..+-.+.-.|. ...+-+.|..|++.|+..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~--~~~~~e~Lq~E~erLr~~ 90 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQR--LREDHSQLQAECERLRGL 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 34444555555555556666555555555544 1 11222222222 235566677777777777
Q ss_pred Hhhhcc
Q 027451 207 LQSLDW 212 (223)
Q Consensus 207 l~~~~~ 212 (223)
+...+.
T Consensus 91 v~~lEe 96 (100)
T 1go4_E 91 LRAMER 96 (100)
T ss_dssp HTTCC-
T ss_pred HHHHhc
Confidence 765443
No 68
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=64.44 E-value=26 Score=22.58 Aligned_cols=40 Identities=28% Similarity=0.376 Sum_probs=23.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhh
Q 027451 149 DQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEG 188 (223)
Q Consensus 149 ~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~ 188 (223)
.+++.++.|+..|+.||+.-...+.+-|.+-..||.=...
T Consensus 10 ~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~ 49 (54)
T 1deb_A 10 KQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQ 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHH
Confidence 3444556666666666666666666655555555554433
No 69
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=64.38 E-value=8.1 Score=31.47 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=25.5
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
+..|+.+.+.+++|+|||..|.++.+.+++
T Consensus 154 ~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 154 IAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567777888889999999999999888875
No 70
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=63.84 E-value=29 Score=24.71 Aligned_cols=57 Identities=14% Similarity=0.234 Sum_probs=31.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
+++.+.++..+|+.++.....+++ +.|-+..-+.-=.+..+|+.+.|=-+.|-..++
T Consensus 9 ~i~~L~~q~~~L~~ei~~~~a~L~--~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA 65 (85)
T 3viq_B 9 RVHLLEQQKEQLESSLQDALAKLK--NRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVA 65 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCS--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344444455555555554433321 112333334444556899999888887766665
No 71
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=63.31 E-value=20 Score=30.28 Aligned_cols=16 Identities=19% Similarity=0.578 Sum_probs=10.3
Q ss_pred HHHHHhHhhhcccccC
Q 027451 201 QNLRNQLQSLDWRLSH 216 (223)
Q Consensus 201 ~~l~~~l~~~~~~~~~ 216 (223)
.+|-..+....|.+..
T Consensus 193 ~qly~~vt~i~w~~~~ 208 (250)
T 2ve7_C 193 AQLYHQVSKIEWEYEC 208 (250)
T ss_dssp HHHHHHHHCCEECSCC
T ss_pred HHHHHHHhhceeeccc
Confidence 4566667777777754
No 72
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=62.63 E-value=28 Score=29.22 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHH
Q 027451 151 MTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEEN 200 (223)
Q Consensus 151 ~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~ 200 (223)
...+++++..|+..|+....|..+..+.++..+.|+..+..-||+++-|.
T Consensus 173 ~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (228)
T 3q0x_A 173 LSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLEV 222 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheee
Confidence 33455666777777777777777777888888888888888899887554
No 73
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=62.21 E-value=44 Score=24.48 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=22.3
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 183 RKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 183 KkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
-.++..|+.|-+||..||+.|..+.++
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888999999999999998766553
No 74
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=62.12 E-value=66 Score=29.14 Aligned_cols=49 Identities=16% Similarity=0.041 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~ 205 (223)
+.+++..++...+..+...+..+..|+.+.+.++...+.|......+..
T Consensus 85 ~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 85 KSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444444555444455555566777777777766666666555444443
No 75
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=62.10 E-value=21 Score=31.40 Aligned_cols=36 Identities=11% Similarity=-0.002 Sum_probs=18.3
Q ss_pred HHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 027451 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (223)
Q Consensus 171 el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~ 206 (223)
.+...+..+..|+.+.+.++...++|......++..
T Consensus 20 ~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 20 IGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445555555555555555555554444443
No 76
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=62.01 E-value=30 Score=24.05 Aligned_cols=42 Identities=14% Similarity=0.043 Sum_probs=25.4
Q ss_pred HHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhc
Q 027451 170 KEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLD 211 (223)
Q Consensus 170 ~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~ 211 (223)
..+.-.+..++.|-...-..+++-|+|......|.+++...+
T Consensus 21 ~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 21 TRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444445677777777777777777777777777765443
No 77
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=61.18 E-value=58 Score=25.59 Aligned_cols=14 Identities=21% Similarity=0.359 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 027451 159 KDLESELETKSKEA 172 (223)
Q Consensus 159 ~~Lk~el~~~~~el 172 (223)
.+|+.++...+.++
T Consensus 101 ~kLEk~id~lEd~L 114 (155)
T 2efr_A 101 TKLEKSIDDLEDEL 114 (155)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 78
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=60.42 E-value=20 Score=21.44 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027451 156 LKLKDLESELETKSKEA 172 (223)
Q Consensus 156 ~e~~~Lk~el~~~~~el 172 (223)
.|+++|-++|+.++.++
T Consensus 7 ~ENekLhk~ie~KdeeI 23 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEI 23 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46777888888777754
No 79
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=60.42 E-value=33 Score=27.93 Aligned_cols=36 Identities=22% Similarity=0.192 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHh
Q 027451 152 TTLKLKLKDLESELETKSKEANAAETNAVALRKQSE 187 (223)
Q Consensus 152 ~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae 187 (223)
+.+..|+..|..+++.++.|++.-+..++.++.|+.
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345556666666666666655444444555555553
No 80
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=60.31 E-value=49 Score=26.96 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=11.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027451 149 DQMTTLKLKLKDLESELETKSKEANAAET 177 (223)
Q Consensus 149 ~~~~~l~~e~~~Lk~el~~~~~el~~~~~ 177 (223)
-||..+.++++....|++..++++.++++
T Consensus 27 ~En~~L~~ql~~k~~ei~~L~~ql~sl~~ 55 (190)
T 4emc_A 27 NENFVLSEKLDTKATEIKQLQKQIDSLNA 55 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444433333334433333333333
No 81
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=60.11 E-value=34 Score=22.59 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=11.4
Q ss_pred HHHHHHHhHhhHHHHHHHH
Q 027451 178 NAVALRKQSEGFLFEYDRL 196 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL 196 (223)
+...|+.+++.|..|...|
T Consensus 38 ~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 38 KNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566666666666665544
No 82
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=59.93 E-value=42 Score=23.51 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=31.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027451 150 QMTTLKLKLKDLESELETKSKEANAAE------TNAVALRKQSEGFLFEYDRLLEENQNLR 204 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~el~~~~~el~~~~------~d~~aLKkQae~l~~EYDrL~~e~~~l~ 204 (223)
+++.+..+|++|+.++...+..+.... ..+..+-.+.+.+..+.+.+.+.-..|.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666666666665553321 2345566666666666666666555553
No 83
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=59.77 E-value=38 Score=30.61 Aligned_cols=10 Identities=20% Similarity=0.162 Sum_probs=3.7
Q ss_pred HHHHhHhhHH
Q 027451 181 ALRKQSEGFL 190 (223)
Q Consensus 181 aLKkQae~l~ 190 (223)
+|+.++..+.
T Consensus 68 ~l~~~~~~~~ 77 (421)
T 1ses_A 68 ALIARGKALG 77 (421)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 84
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=59.35 E-value=54 Score=24.61 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=11.4
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHH
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNL 203 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l 203 (223)
+..|..+...+..+-.+.+.||+.|
T Consensus 86 i~~lE~eL~~~r~em~~ql~EYq~L 110 (131)
T 3tnu_A 86 IGSVEEQLAQLRCEMEQQNQEYKIL 110 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444555443
No 85
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=59.07 E-value=13 Score=28.85 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHH
Q 027451 155 KLKLKDLESELETKSKEANAAETNAV 180 (223)
Q Consensus 155 ~~e~~~Lk~el~~~~~el~~~~~d~~ 180 (223)
.++++.|++.=...++++.+-.++..
T Consensus 45 qgKVDQlqKRn~~HQKEi~~Lrae~~ 70 (167)
T 4gkw_A 45 QGKVDQLQKRNVAHQKEIGKLRAELG 70 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHhccHHHHHHHHHHHHHH
Confidence 45566676665555555544433333
No 86
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=58.76 E-value=45 Score=23.50 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=12.8
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
...|..|......-.++|......|..++.
T Consensus 51 k~~L~~ql~eaEe~~~~L~~~K~eLE~~l~ 80 (89)
T 3bas_A 51 KNDLFGSMKQLEDKVEELLSKNYHLENEVA 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333444433333334444444444444443
No 87
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=58.71 E-value=14 Score=20.16 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=8.4
Q ss_pred HHhHHHHHHHHHHHHHHH
Q 027451 149 DQMTTLKLKLKDLESELE 166 (223)
Q Consensus 149 ~~~~~l~~e~~~Lk~el~ 166 (223)
++..+++.|+..|+.|.+
T Consensus 7 devgelkgevralkdevk 24 (27)
T 3v86_A 7 DEVGELKGEVRALKDEVK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHh
Confidence 344444455555554443
No 88
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=58.53 E-value=30 Score=31.33 Aligned_cols=44 Identities=14% Similarity=0.041 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHH
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLL 197 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~ 197 (223)
+.+|+.+++++.++.+.+.+..+.+++.++.|.-..+.+--+|-
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~ 51 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELH 51 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455544554444444444455666655444333333333
No 89
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=57.69 E-value=74 Score=29.53 Aligned_cols=13 Identities=15% Similarity=0.209 Sum_probs=4.8
Q ss_pred HHHHhHhhHHHHH
Q 027451 181 ALRKQSEGFLFEY 193 (223)
Q Consensus 181 aLKkQae~l~~EY 193 (223)
+|+.++..+..+-
T Consensus 120 ~l~~~~~~l~~~i 132 (501)
T 1wle_A 120 SLRARGREIRKQL 132 (501)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 90
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=57.59 E-value=71 Score=25.48 Aligned_cols=59 Identities=14% Similarity=0.144 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHH----HHHHHHhHhhh
Q 027451 152 TTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEE----NQNLRNQLQSL 210 (223)
Q Consensus 152 ~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e----~~~l~~~l~~~ 210 (223)
.++...+.-|..+++.....+.+++.+...|......+.+|+..+.-+ ...+|..++..
T Consensus 93 ~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE 155 (168)
T 3o0z_A 93 GDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQE 155 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 345556666666666666667777777788888888888888777633 34556555543
No 91
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=57.57 E-value=44 Score=23.03 Aligned_cols=12 Identities=42% Similarity=0.709 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 027451 158 LKDLESELETKS 169 (223)
Q Consensus 158 ~~~Lk~el~~~~ 169 (223)
++.|+.+|.+++
T Consensus 42 I~eLEk~L~ekd 53 (72)
T 3nmd_A 42 IDELELELDQKD 53 (72)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 92
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=57.46 E-value=39 Score=22.79 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHH
Q 027451 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRL 196 (223)
Q Consensus 156 ~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL 196 (223)
.++++|+........++..++.++.-|+.+...|+.|-+.+
T Consensus 35 ~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 35 SKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566666666666667667777777777777776666554
No 93
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=57.10 E-value=1.1e+02 Score=28.73 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=16.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH
Q 027451 94 TLMGASLFLAFMIDRLHHYIRE 115 (223)
Q Consensus 94 YIsGF~LFL~lvI~R~~~li~~ 115 (223)
.+.||..++. .|+.++.+|+.
T Consensus 398 ilegl~~a~~-~id~vI~iIr~ 418 (514)
T 2inr_A 398 IVEGLIKALS-ILDKVIELIRS 418 (514)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHc
Confidence 7899888775 77888888764
No 94
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=56.53 E-value=49 Score=23.28 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHH
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRL 196 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL 196 (223)
++.+++.+++..+..+.+.+.....|..+...+..|+..|
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L 54 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDL 54 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444445555544444444444
No 95
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=56.14 E-value=55 Score=23.69 Aligned_cols=34 Identities=26% Similarity=0.198 Sum_probs=25.3
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhccc
Q 027451 180 VALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWR 213 (223)
Q Consensus 180 ~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~ 213 (223)
.++..|.......-|.|..+..+++..|+..+.+
T Consensus 58 ~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 58 ASLEPQIAETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344566666677788888888999988887766
No 96
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=55.75 E-value=56 Score=23.71 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=4.9
Q ss_pred HHHhHhhHHHHH
Q 027451 182 LRKQSEGFLFEY 193 (223)
Q Consensus 182 LKkQae~l~~EY 193 (223)
|..+.+++.+.|
T Consensus 83 L~~eLe~F~~~y 94 (96)
T 1t3j_A 83 LESELENFSKQF 94 (96)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 334444444433
No 97
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=55.14 E-value=36 Score=21.37 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=14.5
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhc
Q 027451 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLD 211 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~ 211 (223)
.++.|+.....+..||..-. .+++..+...+
T Consensus 13 ~ld~LqTr~ArLlae~~ssq---~KlKqRit~lE 43 (46)
T 3swy_A 13 SLDTLQTRFARLLAEYNATQ---MKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 45555555554444443321 24445544443
No 98
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=54.51 E-value=43 Score=21.99 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=7.9
Q ss_pred HHHHHHhHhhHHHHHHHH
Q 027451 179 AVALRKQSEGFLFEYDRL 196 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL 196 (223)
...|+++++.|..|+..|
T Consensus 39 n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 39 KSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 99
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=54.48 E-value=51 Score=22.88 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=21.6
Q ss_pred hhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 027451 175 AETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (223)
Q Consensus 175 ~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~ 206 (223)
-+.++..+|...+....||..|++=.-.|.-.
T Consensus 38 lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~E 69 (84)
T 1gk4_A 38 LQDEIQNMKEEMARHLREYQDLLNVKMALDIE 69 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33456777788888888888887655444433
No 100
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=54.45 E-value=75 Score=24.80 Aligned_cols=60 Identities=15% Similarity=0.224 Sum_probs=30.4
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027451 146 ALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (223)
Q Consensus 146 ~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~ 205 (223)
...++++.+..++.++=+.++.+=+.+.....+.-.-+.|...|.+.|-.++.+|++.|.
T Consensus 46 ~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~~~r~~k~~~~~L~~~f~~~~~~fq~~Q~ 105 (196)
T 1fio_A 46 HLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQAQAENSRQRFLKLIQDYRIVDS 105 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555444444443344332222234455666666666666666665543
No 101
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=53.42 E-value=30 Score=32.14 Aligned_cols=21 Identities=14% Similarity=0.139 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027451 106 IDRLHHYIRELRIRRKTMEAI 126 (223)
Q Consensus 106 I~R~~~li~~l~~~~~~~~al 126 (223)
+.++..+=.+...++.+.+.+
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l 52 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEH 52 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444433333344433333
No 102
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=53.22 E-value=26 Score=28.06 Aligned_cols=30 Identities=30% Similarity=0.319 Sum_probs=19.8
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
+..+-+|....+++||++-++|.+....++
T Consensus 19 L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq 48 (170)
T 3l4q_C 19 LKVYHQQYQDKSREYDQLYEEYTRTSQELQ 48 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 344456666777888888888876554443
No 103
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=53.19 E-value=55 Score=22.86 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=22.2
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
+...++.+.+.+...|+.|.+....=+.+|
T Consensus 79 ~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L 108 (118)
T 3uul_A 79 EEFEIQEQMTLLNARWEALRVESMERQSRL 108 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999999998887765544444
No 104
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=53.16 E-value=55 Score=22.87 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=20.6
Q ss_pred hhHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027451 176 ETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (223)
Q Consensus 176 ~~d~~aLKkQae~l~~EYDrL~~e~~~l~~ 205 (223)
+.++..+|...+....||..|++=.-.|.-
T Consensus 41 E~el~~~r~e~~~ql~EYq~LlnvK~~Le~ 70 (86)
T 1x8y_A 41 EREMAEMRARMQQQLDEYQELLDIKLALDM 70 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 345677777788888888888765544433
No 105
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=52.96 E-value=25 Score=29.14 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=19.2
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
.++.+++|++.+...|-|+..|+++.+++.+
T Consensus 67 ~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~ 97 (213)
T 4ani_A 67 QIAELEAKLSEMEHRYLRLYADFENFRRRTR 97 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666666677777666665543
No 106
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=52.39 E-value=90 Score=25.08 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHhc
Q 027451 102 LAFMIDRLHHYIRE--LRIRRKTMEAIKNQ 129 (223)
Q Consensus 102 L~lvI~R~~~li~~--l~~~~~~~~al~kQ 129 (223)
|.++|-+++.++.+ +-+++..+++.+-|
T Consensus 54 LTLLLGnL~~IlG~~SlTqL~nrL~~wlsQ 83 (201)
T 3u0c_A 54 LTLLIGNLIQILGEKSLTALTNKITAWKSQ 83 (201)
T ss_dssp HHHHHHHHHHHHCSGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 56677788888764 33455555555544
No 107
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=52.28 E-value=64 Score=23.33 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q 027451 158 LKDLESELETKSKEANAAETNAVALRKQSEGF 189 (223)
Q Consensus 158 ~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l 189 (223)
+.-|+.+++--..+..+..+|.+-+....+.+
T Consensus 42 i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L 73 (94)
T 3jsv_C 42 VPVLKAQADIYKADFQAERHAREKLVEKKEYL 73 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44455555555555555445554444443333
No 108
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=52.11 E-value=53 Score=30.01 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=3.6
Q ss_pred HHHHhHhhHH
Q 027451 181 ALRKQSEGFL 190 (223)
Q Consensus 181 aLKkQae~l~ 190 (223)
.|+.++..+.
T Consensus 73 ~l~~~~~~~~ 82 (455)
T 2dq0_A 73 ELLAKSREIV 82 (455)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 109
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=51.99 E-value=38 Score=24.00 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 027451 157 KLKDLESELETKSKE 171 (223)
Q Consensus 157 e~~~Lk~el~~~~~e 171 (223)
|+++|..+++.++.+
T Consensus 39 EN~~Lh~~ie~~~eE 53 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSE 53 (83)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555544443
No 110
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=51.64 E-value=39 Score=26.28 Aligned_cols=57 Identities=25% Similarity=0.360 Sum_probs=27.4
Q ss_pred HHhHHHhHHHHHHHHH-----HHHHHHHHHHHHHHhhhHHHHHHHhHhhH--------HHHHHHHHHHHH
Q 027451 145 KALEDQMTTLKLKLKD-----LESELETKSKEANAAETNAVALRKQSEGF--------LFEYDRLLEENQ 201 (223)
Q Consensus 145 ~~~~~~~~~l~~e~~~-----Lk~el~~~~~el~~~~~d~~aLKkQae~l--------~~EYDrL~~e~~ 201 (223)
..+.+.++.++++|-. ...+++...+++..+.++++.|+.-.... ++|-+..++|-+
T Consensus 31 DDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~VceEQq 100 (141)
T 3okq_A 31 DDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCEEQQ 100 (141)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 3444555555544421 23344444445555555555544433332 456666666654
No 111
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=51.40 E-value=36 Score=23.43 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=16.9
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
+..|+.+.+.+..+.++|..++..|+.++.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555556666666666666654
No 112
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=50.89 E-value=1.1e+02 Score=25.65 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhHhhHHHH
Q 027451 163 SELETKSKEANAAETNAVALRKQSEGFLFE 192 (223)
Q Consensus 163 ~el~~~~~el~~~~~d~~aLKkQae~l~~E 192 (223)
..+...+.|+.++|++...-..|..|..++
T Consensus 131 ~kl~~LeqELvraEae~lvaEAqL~n~kR~ 160 (234)
T 3plt_A 131 TKIPVLEQELVRAEAESLVAEAQLSNITRE 160 (234)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHhHHH
Confidence 345566667777777666666666666553
No 113
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=50.71 E-value=75 Score=23.68 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=12.0
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHH
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNL 203 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l 203 (223)
+..|..+...+..+-.+.+.||+.|
T Consensus 84 i~~lE~eL~~~r~e~~~ql~EYq~L 108 (129)
T 3tnu_B 84 LAELEEALQKAKQDMARLLREYQEL 108 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555544
No 114
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=50.58 E-value=78 Score=29.35 Aligned_cols=15 Identities=13% Similarity=0.222 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 027451 113 IRELRIRRKTMEAIK 127 (223)
Q Consensus 113 i~~l~~~~~~~~al~ 127 (223)
+.++..+-+...+++
T Consensus 32 ~~~~~~ld~~~r~~~ 46 (485)
T 3qne_A 32 VDEIIAEYKEWVKLR 46 (485)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 115
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=50.24 E-value=59 Score=22.31 Aligned_cols=40 Identities=30% Similarity=0.340 Sum_probs=18.1
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHH-------HHhHhhhcccccCCC
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNL-------RNQLQSLDWRLSHSG 218 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l-------~~~l~~~~~~~~~~~ 218 (223)
+..+|...+....||..|++=.-.| ++-|+..+.|++-+.
T Consensus 21 L~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLEGEe~Rl~~~~ 67 (74)
T 2xv5_A 21 MAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERLRLSP 67 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCC
Confidence 4555666666777777766554333 344555566665543
No 116
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=50.14 E-value=51 Score=27.00 Aligned_cols=39 Identities=15% Similarity=0.354 Sum_probs=29.8
Q ss_pred HHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 171 el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
.++.|+.=...||+..+.|..|+..+.++...++.++..
T Consensus 25 rL~~a~rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~ 63 (217)
T 3aon_A 25 QLTTATRGHKLLKDKQDELMRQFILLIRKNNELRQAIEK 63 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455567888888889999988888888888777654
No 117
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=50.04 E-value=41 Score=30.26 Aligned_cols=11 Identities=36% Similarity=0.441 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 027451 156 LKLKDLESELE 166 (223)
Q Consensus 156 ~e~~~Lk~el~ 166 (223)
+++++++.+++
T Consensus 24 ~~~~~~~~~~~ 34 (403)
T 4etp_A 24 EKIKDTELGMK 34 (403)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 118
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=49.53 E-value=62 Score=29.19 Aligned_cols=11 Identities=27% Similarity=0.244 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 027451 157 KLKDLESELET 167 (223)
Q Consensus 157 e~~~Lk~el~~ 167 (223)
++++++.+++.
T Consensus 72 ~~~~~~~~~~~ 82 (421)
T 1ses_A 72 RGKALGEEAKR 82 (421)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33334433333
No 119
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=49.41 E-value=72 Score=29.59 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027451 107 DRLHHYIRELRIRRKTMEAI 126 (223)
Q Consensus 107 ~R~~~li~~l~~~~~~~~al 126 (223)
..+..+=.+...++.+.+.+
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l 89 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSL 89 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 120
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=49.21 E-value=55 Score=23.12 Aligned_cols=28 Identities=32% Similarity=0.272 Sum_probs=15.5
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027451 178 NAVALRKQSEGFLFEYDRLLEENQNLRN 205 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~~~l~~ 205 (223)
+.+.|.++.+.++.|-..+..+++.|+.
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555543
No 121
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=48.27 E-value=57 Score=26.20 Aligned_cols=56 Identities=23% Similarity=0.311 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHhHhhHHHHH-HHHHHHHHHHHHhHhh
Q 027451 154 LKLKLKDLESELETKSKEANA-AETNAVALRKQSEGFLFEY-DRLLEENQNLRNQLQS 209 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~-~~~d~~aLKkQae~l~~EY-DrL~~e~~~l~~~l~~ 209 (223)
+.+++++|+..|+-...+++. ...+++.++.+..-...+| .++....+.++.++..
T Consensus 104 l~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr~kl~~~~eeLr~~l~P 161 (191)
T 1nfn_A 104 LGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAV 161 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHH
Confidence 455677777777777666644 3567889999998888888 5666666778888763
No 122
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=47.97 E-value=92 Score=23.89 Aligned_cols=12 Identities=17% Similarity=0.133 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 027451 115 ELRIRRKTMEAI 126 (223)
Q Consensus 115 ~l~~~~~~~~al 126 (223)
+.-.++...+.+
T Consensus 30 eN~~Lk~e~e~l 41 (155)
T 2oto_A 30 ENKDLKARLENA 41 (155)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344433333
No 123
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=47.37 E-value=57 Score=21.35 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=15.6
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
++.|.++-..|..+.+.|.+|.+.|+..+
T Consensus 32 v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 32 TDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555443
No 124
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=47.08 E-value=76 Score=22.67 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=11.8
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHH
Q 027451 178 NAVALRKQSEGFLFEYDRLLEEN 200 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~ 200 (223)
.++.|.+|.+.+.++++.+....
T Consensus 85 ~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 85 RLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555554433
No 125
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=46.72 E-value=90 Score=23.45 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHH
Q 027451 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQ 201 (223)
Q Consensus 158 ~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~ 201 (223)
..+++.++..+..++... .+...-|+|..++-+.|-.+..+.+
T Consensus 46 ~~~l~~~i~er~~~i~~~-~~~~~yk~~y~~l~k~Y~~~~keLd 88 (119)
T 3etw_A 46 NEQVYNELSQRAQRLQAE-ANTRFYKSQYQELASKYEDALKKLE 88 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHHHHHHHHH
Confidence 355666666665555432 2334455555555555544444443
No 126
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=46.62 E-value=55 Score=20.94 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=16.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q 027451 150 QMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l 189 (223)
++..+.+.+++|-.-|+ .|...+..|+.|.+.+
T Consensus 17 ~l~~L~~rN~rL~~~L~-------~AR~el~~Lkeele~L 49 (51)
T 3m91_A 17 RIDSLAARNSKLMETLK-------EARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 33334444444444333 3444566666666544
No 127
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=46.59 E-value=68 Score=21.99 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=13.7
Q ss_pred HHHHHHHhHhhHHHHHHHHHH
Q 027451 178 NAVALRKQSEGFLFEYDRLLE 198 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~ 198 (223)
++-.+|-+.+.=-..|-+|++
T Consensus 37 ~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 37 ELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345666666665677888875
No 128
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=46.57 E-value=37 Score=31.05 Aligned_cols=6 Identities=17% Similarity=0.368 Sum_probs=2.1
Q ss_pred HHHHHH
Q 027451 107 DRLHHY 112 (223)
Q Consensus 107 ~R~~~l 112 (223)
.++..+
T Consensus 31 ~~~~~l 36 (455)
T 2dq0_A 31 DEILKL 36 (455)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 129
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=46.55 E-value=72 Score=22.27 Aligned_cols=60 Identities=23% Similarity=0.283 Sum_probs=37.9
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHH
Q 027451 143 EIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQN 202 (223)
Q Consensus 143 ~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~ 202 (223)
..++....|..+.+.|..|+..++....+-...+.++..+-.+..+=--|-..|-+...+
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 445555667778888888888888777666666666666666665554444444333333
No 130
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=46.09 E-value=55 Score=20.84 Aligned_cols=29 Identities=7% Similarity=0.171 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQ 185 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQ 185 (223)
+.+.++..+....++++++..++..++.|
T Consensus 27 ~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 27 EFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444
No 131
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*
Probab=46.03 E-value=63 Score=26.60 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=32.6
Q ss_pred HHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 170 KEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 170 ~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
+.|+.|+.=...||+..+.|..|+..+.++...++.++..
T Consensus 16 ~rL~~a~rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~ 55 (223)
T 3a5c_G 16 GQLRLAQKGVDLLKKKRDALVAEFFGLVREAMEARKALDQ 55 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555568999999999999999999999999888764
No 132
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=45.97 E-value=33 Score=25.10 Aligned_cols=31 Identities=39% Similarity=0.343 Sum_probs=18.5
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
+..+++.++.|..|=|+|.++.+.|.-++..
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556666666666666666665543
No 133
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=45.77 E-value=69 Score=21.85 Aligned_cols=6 Identities=17% Similarity=0.401 Sum_probs=2.3
Q ss_pred HHHhHh
Q 027451 203 LRNQLQ 208 (223)
Q Consensus 203 l~~~l~ 208 (223)
+|....
T Consensus 50 ~q~s~~ 55 (74)
T 2q6q_A 50 LQIKIS 55 (74)
T ss_dssp HHHHHH
T ss_pred hhhhhH
Confidence 333333
No 134
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=45.42 E-value=16 Score=22.28 Aligned_cols=17 Identities=35% Similarity=0.684 Sum_probs=15.4
Q ss_pred HHHHhHHHHHHHHHHHH
Q 027451 93 ATLMGASLFLAFMIDRL 109 (223)
Q Consensus 93 ~YIsGF~LFL~lvI~R~ 109 (223)
+=+-|-+||.+++|+|+
T Consensus 21 aGiIG~IllI~y~I~rl 37 (40)
T 1afo_A 21 AGVIGTILLISYGIRRL 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47889999999999997
No 135
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=45.39 E-value=75 Score=22.13 Aligned_cols=9 Identities=33% Similarity=0.276 Sum_probs=3.9
Q ss_pred HHHHHHHhH
Q 027451 178 NAVALRKQS 186 (223)
Q Consensus 178 d~~aLKkQa 186 (223)
.+..|..+.
T Consensus 37 ~i~~le~~l 45 (89)
T 2lw1_A 37 KLEALQTQV 45 (89)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444444
No 136
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=45.07 E-value=61 Score=20.98 Aligned_cols=14 Identities=14% Similarity=-0.057 Sum_probs=5.4
Q ss_pred HHHHHhHhhHHHHH
Q 027451 180 VALRKQSEGFLFEY 193 (223)
Q Consensus 180 ~aLKkQae~l~~EY 193 (223)
..|++++..|..|.
T Consensus 39 ~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 39 GQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334333333333
No 137
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=44.89 E-value=51 Score=22.81 Aligned_cols=13 Identities=23% Similarity=0.279 Sum_probs=7.0
Q ss_pred HHHHHHHHHhccc
Q 027451 119 RRKTMEAIKNQSR 131 (223)
Q Consensus 119 ~~~~~~al~kQa~ 131 (223)
+.....++....-
T Consensus 16 lk~~f~~Lr~~vP 28 (80)
T 1nlw_A 16 LRLSLEKLKGLVP 28 (80)
T ss_dssp HHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHcC
Confidence 4455566665544
No 138
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=44.52 E-value=88 Score=22.70 Aligned_cols=17 Identities=29% Similarity=0.219 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhHh
Q 027451 192 EYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 192 EYDrL~~e~~~l~~~l~ 208 (223)
+...+-..+.+|+.++.
T Consensus 77 e~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 77 EKYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34455555566666664
No 139
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=43.41 E-value=65 Score=20.84 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=10.1
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHH
Q 027451 180 VALRKQSEGFLFEYDRLLEENQNLR 204 (223)
Q Consensus 180 ~aLKkQae~l~~EYDrL~~e~~~l~ 204 (223)
+.|.++-..|..+...|.+|...|+
T Consensus 32 ~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 32 EDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433
No 140
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=43.24 E-value=91 Score=22.51 Aligned_cols=50 Identities=14% Similarity=0.302 Sum_probs=36.2
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 154 LKLKLK-DLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 154 l~~e~~-~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
++..++ .|...+....+++. ++..| .|-+-|.++|-.+..+++.++.+-.
T Consensus 38 LR~~l~~~l~~~~~~L~k~~~----~l~~l-~qkeRL~~dF~~l~~~fQ~~qr~y~ 88 (97)
T 1hs7_A 38 LRYKIETELIPNCTSVRDKIE----SNILI-HQNGKLSADFKNLKTKYQSLQQSYN 88 (97)
T ss_dssp HHHHHHHTHHHHHHHHHHHHH----HSTHH-HHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----Hhccc-chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 566677 77777776666654 45555 4888888899888888888876654
No 141
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=42.75 E-value=17 Score=24.21 Aligned_cols=23 Identities=22% Similarity=0.557 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhc
Q 027451 189 FLFEYDRLLEENQNLRNQLQSLD 211 (223)
Q Consensus 189 l~~EYDrL~~e~~~l~~~l~~~~ 211 (223)
.+.|-|+|.-+|+++.......+
T Consensus 34 ~SQeLD~LIn~Y~k~~~~~~~~~ 56 (62)
T 2bzb_A 34 FSRDLDKLINKFMNVKDKVHKLE 56 (62)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCCS
T ss_pred HHHHHHHHHHHHHHHhcccchhh
Confidence 46677888888877665444433
No 142
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=42.48 E-value=83 Score=21.81 Aligned_cols=30 Identities=10% Similarity=0.114 Sum_probs=22.0
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 178 NAVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
+...++.+.+.+...|+.|......=+..|
T Consensus 79 ~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L 108 (119)
T 3uun_A 79 EETEVQEQMNLLNSRWECLRVASMEKQSNL 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888999999998887765544444
No 143
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=42.21 E-value=60 Score=23.97 Aligned_cols=15 Identities=7% Similarity=0.036 Sum_probs=9.3
Q ss_pred HHHHHHHhHhhHHHH
Q 027451 178 NAVALRKQSEGFLFE 192 (223)
Q Consensus 178 d~~aLKkQae~l~~E 192 (223)
++..||.+++++.+|
T Consensus 26 ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 26 EIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666666665
No 144
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=41.78 E-value=27 Score=22.67 Aligned_cols=17 Identities=18% Similarity=0.550 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHhHh
Q 027451 192 EYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 192 EYDrL~~e~~~l~~~l~ 208 (223)
+|.++.+|+..|+++++
T Consensus 35 ~~~~l~~e~~~L~~~~~ 51 (57)
T 2wuj_A 35 DYEIVLRKKTELEAKVN 51 (57)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 145
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=41.42 E-value=38 Score=23.25 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALR 183 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLK 183 (223)
+..+++.+..|.++....+++++.+...++
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555544555544
No 146
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=41.26 E-value=80 Score=21.27 Aligned_cols=27 Identities=26% Similarity=0.217 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhcccc
Q 027451 188 GFLFEYDRLLEENQNLRNQLQSLDWRL 214 (223)
Q Consensus 188 ~l~~EYDrL~~e~~~l~~~l~~~~~~~ 214 (223)
-+++-+|.+.+|++++.+++++..-++
T Consensus 36 KL~Rk~DKl~~ele~l~~~l~~~~~~~ 62 (65)
T 3sja_C 36 KNNRKLDSLDKEINNLKDEIQSENHHH 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 466778889999999888888765544
No 147
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=41.21 E-value=47 Score=22.98 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=9.3
Q ss_pred HHHHHHHhHhhHHHHHH
Q 027451 178 NAVALRKQSEGFLFEYD 194 (223)
Q Consensus 178 d~~aLKkQae~l~~EYD 194 (223)
.++.|+.....|..||.
T Consensus 15 sld~LQTrfARLLaEy~ 31 (74)
T 3swf_A 15 SVDLLQTRFARILAEYE 31 (74)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555554
No 148
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.92 E-value=37 Score=30.78 Aligned_cols=28 Identities=14% Similarity=0.207 Sum_probs=21.9
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027451 178 NAVALRKQSEGFLFEYDRLLEENQNLRN 205 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~~~l~~ 205 (223)
+.+-++.|...+++||.++.+|...+|.
T Consensus 64 e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 64 QEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4567888888889999888888776654
No 149
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=40.61 E-value=1.1e+02 Score=22.62 Aligned_cols=64 Identities=14% Similarity=0.237 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q 027451 119 RRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGF 189 (223)
Q Consensus 119 ~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l 189 (223)
++...+.+++|...++. +...+.-++......+++++...+.--..-..+|+++.+|||..+..
T Consensus 18 ye~~I~~LR~qid~~~~-------e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~ 81 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTN-------DKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNA 81 (119)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHH
Confidence 56677778888765543 22333334444555566666555544444566788999999988764
No 150
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=40.59 E-value=1.6e+02 Score=27.34 Aligned_cols=90 Identities=13% Similarity=0.119 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhcccccccccccch----HHHHHhHHHhHHHHHHHHH----HHHHHHHHHHHHHHhhhHHHHHHHh
Q 027451 114 RELRIRRKTMEAIKNQSRGFEDGKAASS----EEIKALEDQMTTLKLKLKD----LESELETKSKEANAAETNAVALRKQ 185 (223)
Q Consensus 114 ~~l~~~~~~~~al~kQa~~~~~~~~~~~----~~~~~~~~~~~~l~~e~~~----Lk~el~~~~~el~~~~~d~~aLKkQ 185 (223)
.+|+.++++++..++-.+.+..+.++.- .+..+...|++..++..++ .+.++++=+++|.+-+++. ..
T Consensus 9 ~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~----Ae 84 (497)
T 3iox_A 9 AKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDL----AD 84 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 4556666666555543332322211111 1112233344444433333 3333444455665544442 22
Q ss_pred HhhHHHHHHHHHHHHHHHHHhH
Q 027451 186 SEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 186 ae~l~~EYDrL~~e~~~l~~~l 207 (223)
.+.-.++|+.=..++++...++
T Consensus 85 Y~~kl~aYe~~~~~~~k~lae~ 106 (497)
T 3iox_A 85 YPVKLKAYEDEQTSIKAALAEL 106 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555455555444433
No 151
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=40.41 E-value=94 Score=21.83 Aligned_cols=8 Identities=13% Similarity=0.198 Sum_probs=3.0
Q ss_pred HHHHHHhH
Q 027451 179 AVALRKQS 186 (223)
Q Consensus 179 ~~aLKkQa 186 (223)
++.++++.
T Consensus 61 ~~~l~~~~ 68 (81)
T 1wt6_A 61 VRQLQERM 68 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 152
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=40.21 E-value=75 Score=20.68 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=9.5
Q ss_pred HhHHHhHHHHHHHHHHHHHHH
Q 027451 146 ALEDQMTTLKLKLKDLESELE 166 (223)
Q Consensus 146 ~~~~~~~~l~~e~~~Lk~el~ 166 (223)
++.|++..+.+|.++|++-++
T Consensus 14 aLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 153
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=40.09 E-value=2.6e+02 Score=27.16 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=16.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Q 027451 94 TLMGASLFLAFMIDRLHHYIREL 116 (223)
Q Consensus 94 YIsGF~LFL~lvI~R~~~li~~l 116 (223)
.+.|+..++. .|+.++.+|+.-
T Consensus 581 ilegl~~a~~-~iD~vI~iIr~s 602 (692)
T 2xcs_B 581 ILEGLRIALD-HIDEIISTIRES 602 (692)
T ss_dssp HHHHHHHHHH-THHHHHHHHHTC
T ss_pred HHhhHHHHHH-hHHHHHHHHHhC
Confidence 8889876665 678888887653
No 154
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=39.85 E-value=91 Score=21.54 Aligned_cols=7 Identities=43% Similarity=0.752 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 027451 191 FEYDRLL 197 (223)
Q Consensus 191 ~EYDrL~ 197 (223)
..|.+|+
T Consensus 71 atYRkLL 77 (84)
T 1gk4_A 71 ATYRKLL 77 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344443
No 155
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=39.54 E-value=1e+02 Score=26.46 Aligned_cols=47 Identities=11% Similarity=0.174 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHh-HhhHHHHHHHHHHHHHHH
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQ-SEGFLFEYDRLLEENQNL 203 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQ-ae~l~~EYDrL~~e~~~l 203 (223)
.+++++.++++.+.++...++++..+.++ .+.+..-|+.+..+.+..
T Consensus 227 ~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~ 274 (357)
T 3rrk_A 227 AAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVARY 274 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666677777777 777887888777666543
No 156
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=39.33 E-value=40 Score=21.39 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=16.4
Q ss_pred HHHHHHHhHhhHHHHHHHHH
Q 027451 178 NAVALRKQSEGFLFEYDRLL 197 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~ 197 (223)
++.+|..=.+.|+.||+++.
T Consensus 28 EV~~L~~NL~EL~~E~~~~~ 47 (48)
T 3v1a_A 28 EVRTLQENLHQLMHEYFQQS 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 57888888888889998864
No 157
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=38.85 E-value=79 Score=20.51 Aligned_cols=6 Identities=17% Similarity=0.307 Sum_probs=2.1
Q ss_pred HHHhHh
Q 027451 182 LRKQSE 187 (223)
Q Consensus 182 LKkQae 187 (223)
|+.++.
T Consensus 41 L~~~v~ 46 (62)
T 1jnm_A 41 LASTAN 46 (62)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 158
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=38.67 E-value=1.1e+02 Score=21.94 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=21.0
Q ss_pred hhhHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027451 175 AETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (223)
Q Consensus 175 ~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~ 205 (223)
-+.++..+|...+....||..|++=.-.|.-
T Consensus 49 lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~ 79 (95)
T 3mov_A 49 KEREMAEIRDQMQQQLNDYEQLLDVKLALDM 79 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777888888888888765544433
No 159
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=38.38 E-value=17 Score=20.96 Aligned_cols=14 Identities=7% Similarity=0.028 Sum_probs=11.7
Q ss_pred HHHHhHHHHHHhhh
Q 027451 55 MLISSVYNIMMIQK 68 (223)
Q Consensus 55 lF~Dai~~~~k~~~ 68 (223)
-|.|+++|++.+-.
T Consensus 9 aFadA~~RaRQIaA 22 (31)
T 2kxh_B 9 AFKDALQRARQIAA 22 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 38999999988854
No 160
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=37.00 E-value=1.3e+02 Score=22.57 Aligned_cols=43 Identities=19% Similarity=0.306 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHH
Q 027451 159 KDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQN 202 (223)
Q Consensus 159 ~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~ 202 (223)
.+++.++.++..++.. ..+..--|.|..+|.+.|+.+..+.++
T Consensus 47 ~~m~~~i~ek~~~i~~-~~~~~~yK~eY~~L~KkYk~~~~~Ld~ 89 (119)
T 2avr_X 47 EQVYNELSQRAQRLQA-EANTRFYKSQYQELASKYEDALKKLEA 89 (119)
T ss_dssp HHHHHHHHHHHHHHHH-HTTSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666665555433 233445666766776766666555543
No 161
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=36.85 E-value=84 Score=22.01 Aligned_cols=30 Identities=17% Similarity=0.380 Sum_probs=15.2
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
+..|+.+...+..+-+.|..+++.|+.+++
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555555555554
No 162
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=36.01 E-value=80 Score=19.77 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=23.2
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
++-|..-.+.++.-|-||+.||+..|.++.
T Consensus 7 v~~Le~~ld~LqTr~ArLlae~~ssq~KlK 36 (46)
T 3swy_A 7 VEQLGSSLDTLQTRFARLLAEYNATQMKMK 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888888888888888877764
No 163
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=35.88 E-value=2e+02 Score=24.32 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=6.5
Q ss_pred HHHHHHHhHhhHHHHH
Q 027451 178 NAVALRKQSEGFLFEY 193 (223)
Q Consensus 178 d~~aLKkQae~l~~EY 193 (223)
+.+.++.+..-...++
T Consensus 67 ~~eelr~kL~p~~~el 82 (273)
T 3s84_A 67 QAEQLRRQLTPYAQRM 82 (273)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444444444433333
No 164
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=35.85 E-value=2e+02 Score=26.49 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 027451 106 IDRLHHYIRELRIRRKTMEAIKN 128 (223)
Q Consensus 106 I~R~~~li~~l~~~~~~~~al~k 128 (223)
+.++..+=.+-..++.+.+.++.
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~ 58 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKK 58 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554444444444444444443
No 165
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=35.79 E-value=2e+02 Score=24.31 Aligned_cols=6 Identities=17% Similarity=0.274 Sum_probs=2.2
Q ss_pred HHHHhH
Q 027451 202 NLRNQL 207 (223)
Q Consensus 202 ~l~~~l 207 (223)
.++.++
T Consensus 147 ~a~~~l 152 (369)
T 4dk0_A 147 TAETNL 152 (369)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 333333
No 166
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=35.52 E-value=1.2e+02 Score=28.31 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=15.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 027451 94 TLMGASLFLAFMIDRLHHYIR 114 (223)
Q Consensus 94 YIsGF~LFL~lvI~R~~~li~ 114 (223)
.+.||..++. .|+.++.+|+
T Consensus 374 ilegl~~a~~-~id~vI~iIr 393 (496)
T 2nov_A 374 IVEGLIRVIS-ILDEVIALIR 393 (496)
T ss_dssp HHHHHHHHHH-SHHHHHHHHT
T ss_pred HHHHHHHHHH-HHhhHHHHHH
Confidence 7889887764 6788887764
No 167
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=35.36 E-value=38 Score=28.49 Aligned_cols=15 Identities=27% Similarity=0.224 Sum_probs=3.9
Q ss_pred HHHHHHHHHHHHHHH
Q 027451 157 KLKDLESELETKSKE 171 (223)
Q Consensus 157 e~~~Lk~el~~~~~e 171 (223)
++++++.+|++++.+
T Consensus 163 En~~le~~Ie~Lk~e 177 (250)
T 2ve7_C 163 AHQEALMKLERLEKE 177 (250)
T ss_dssp HHHHHHHSCC-----
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444433333
No 168
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=35.16 E-value=94 Score=25.58 Aligned_cols=22 Identities=14% Similarity=0.040 Sum_probs=12.4
Q ss_pred HHHHHHhHhhHHHHHHHHHHHH
Q 027451 179 AVALRKQSEGFLFEYDRLLEEN 200 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~ 200 (223)
+..|-.++..+..-++||..+.
T Consensus 141 LkeLae~~q~la~vi~~l~~~~ 162 (209)
T 2wvr_A 141 LAEVAEHVQYMAELIERLNGEP 162 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 4455556666666677776554
No 169
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=35.09 E-value=96 Score=21.01 Aligned_cols=26 Identities=27% Similarity=0.148 Sum_probs=10.4
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHh
Q 027451 181 ALRKQSEGFLFEYDRLLEENQNLRNQ 206 (223)
Q Consensus 181 aLKkQae~l~~EYDrL~~e~~~l~~~ 206 (223)
.|..|+..+..+.+.+..|++.|+.+
T Consensus 33 ~LE~~v~~le~~~~~l~~en~~Lr~~ 58 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLENDQLRQK 58 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444333
No 170
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=35.06 E-value=2.7e+02 Score=25.59 Aligned_cols=13 Identities=38% Similarity=0.442 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 027451 193 YDRLLEENQNLRN 205 (223)
Q Consensus 193 YDrL~~e~~~l~~ 205 (223)
.+.+..+.++|..
T Consensus 177 ~~~l~~ki~~l~~ 189 (464)
T 1m1j_B 177 IDSLHKKIQKLEN 189 (464)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444433
No 171
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=34.95 E-value=1.2e+02 Score=21.29 Aligned_cols=24 Identities=8% Similarity=0.201 Sum_probs=9.8
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 184 KQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 184 kQae~l~~EYDrL~~e~~~l~~~l 207 (223)
+..+.+.+.++.+.++.++++..+
T Consensus 79 ~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444443
No 172
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=34.86 E-value=1.3e+02 Score=21.71 Aligned_cols=27 Identities=7% Similarity=0.117 Sum_probs=21.2
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 027451 180 VALRKQSEGFLFEYDRLLEENQNLRNQ 206 (223)
Q Consensus 180 ~aLKkQae~l~~EYDrL~~e~~~l~~~ 206 (223)
-.-+.|..+|.+-|-.++.+|+..+..
T Consensus 91 Rir~~q~~~L~~kf~e~m~~y~~~q~~ 117 (127)
T 1ez3_A 91 RIRKTQHSTLSRKFVEVMSEYNATQSD 117 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888888888888888876543
No 173
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=34.76 E-value=1.2e+02 Score=21.46 Aligned_cols=31 Identities=16% Similarity=0.007 Sum_probs=25.0
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHHhHhhhccc
Q 027451 183 RKQSEGFLFEYDRLLEENQNLRNQLQSLDWR 213 (223)
Q Consensus 183 KkQae~l~~EYDrL~~e~~~l~~~l~~~~~~ 213 (223)
|+|.+....|.--.....+.|+.+++..+.+
T Consensus 55 kk~~~~V~~eL~~sn~kl~~L~~eL~eL~a~ 85 (86)
T 1cxz_B 55 GRSLGPVELLLRGSSRRLDLLHQQLQELHAH 85 (86)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7888888888888888888888888876654
No 174
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=34.40 E-value=1.3e+02 Score=21.66 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027451 154 LKLKLKDLESELETKSKE 171 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~e 171 (223)
++.++++|..||+...+.
T Consensus 54 L~Rk~DKl~~ele~l~~~ 71 (93)
T 3sjb_C 54 NNRKLDSLDKEINNLKDE 71 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555544444433
No 175
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=34.29 E-value=54 Score=22.50 Aligned_cols=16 Identities=19% Similarity=0.125 Sum_probs=6.6
Q ss_pred HHHhHhhHHHHHHHHH
Q 027451 182 LRKQSEGFLFEYDRLL 197 (223)
Q Consensus 182 LKkQae~l~~EYDrL~ 197 (223)
|-.|.+..+.+|-++.
T Consensus 16 l~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 16 LNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444443
No 176
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=34.13 E-value=61 Score=22.99 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=12.7
Q ss_pred HHHHHHHhHhhHHHHHHHHH
Q 027451 178 NAVALRKQSEGFLFEYDRLL 197 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~ 197 (223)
+.+.|+.|++.|.+|.+.|-
T Consensus 51 EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 51 ENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666677766666666554
No 177
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=33.82 E-value=93 Score=19.87 Aligned_cols=11 Identities=9% Similarity=0.090 Sum_probs=4.3
Q ss_pred HHHHHhHhhHH
Q 027451 180 VALRKQSEGFL 190 (223)
Q Consensus 180 ~aLKkQae~l~ 190 (223)
..|+.|.+.++
T Consensus 39 ~~L~~~~~~L~ 49 (55)
T 1dh3_A 39 KTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444433333
No 178
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=33.76 E-value=1.2e+02 Score=21.16 Aligned_cols=17 Identities=12% Similarity=0.251 Sum_probs=7.5
Q ss_pred HHHHHHHhHhhHHHHHH
Q 027451 178 NAVALRKQSEGFLFEYD 194 (223)
Q Consensus 178 d~~aLKkQae~l~~EYD 194 (223)
+++.++++-..+-.+-|
T Consensus 49 ~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 49 QLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555554444433333
No 179
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=33.57 E-value=97 Score=25.50 Aligned_cols=22 Identities=36% Similarity=0.258 Sum_probs=8.8
Q ss_pred HHHHHhHhhHHHHHHHHHHHHH
Q 027451 180 VALRKQSEGFLFEYDRLLEENQ 201 (223)
Q Consensus 180 ~aLKkQae~l~~EYDrL~~e~~ 201 (223)
+.|.++.+.++.|-.+|.+|+.
T Consensus 118 ~~Lh~~ie~l~eEi~~LkeEn~ 139 (209)
T 2wvr_A 118 EKLHKEIEQKDNEIARLKKENK 139 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433333
No 180
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=33.55 E-value=51 Score=27.14 Aligned_cols=11 Identities=9% Similarity=-0.148 Sum_probs=4.3
Q ss_pred HHHHHHhHhhH
Q 027451 179 AVALRKQSEGF 189 (223)
Q Consensus 179 ~~aLKkQae~l 189 (223)
..-|++|.|.+
T Consensus 155 ~~~l~~qlE~~ 165 (213)
T 1ik9_A 155 WNDVQGRFEKA 165 (213)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344443333
No 181
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=33.33 E-value=91 Score=19.61 Aligned_cols=8 Identities=25% Similarity=0.380 Sum_probs=2.8
Q ss_pred HHHhHhhH
Q 027451 182 LRKQSEGF 189 (223)
Q Consensus 182 LKkQae~l 189 (223)
|.|...|+
T Consensus 43 lekdianl 50 (56)
T 3he4_A 43 LEKDIANL 50 (56)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 182
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=33.21 E-value=1.5e+02 Score=22.02 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=8.1
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHHhHhhhccccc
Q 027451 183 RKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLS 215 (223)
Q Consensus 183 KkQae~l~~EYDrL~~e~~~l~~~l~~~~~~~~ 215 (223)
..|...|...=.+++.+..+|+...+..-.|||
T Consensus 76 q~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk~~ 108 (112)
T 1x79_B 76 QEQMAVLMQSREQVSEELVRLQKDNDSLQGKHS 108 (112)
T ss_dssp HHHHHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh
Confidence 344444444444555555555555554444444
No 183
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=33.09 E-value=88 Score=28.16 Aligned_cols=9 Identities=33% Similarity=0.822 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 027451 158 LKDLESELE 166 (223)
Q Consensus 158 ~~~Lk~el~ 166 (223)
++.++.+++
T Consensus 77 ~~~~~~~~~ 85 (425)
T 2dq3_A 77 VKELKEEID 85 (425)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 184
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=33.01 E-value=1.3e+02 Score=23.58 Aligned_cols=55 Identities=24% Similarity=0.346 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHhHhhHHHHH-HHHHHHHHHHHHhHh
Q 027451 154 LKLKLKDLESELETKSKEANAA-ETNAVALRKQSEGFLFEY-DRLLEENQNLRNQLQ 208 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~-~~d~~aLKkQae~l~~EY-DrL~~e~~~l~~~l~ 208 (223)
+..++++++..++-.-.+++.. ..+.+.+|.+.+-...+| .++..+-+.|+.++.
T Consensus 104 L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~eeL~~~~~~~~eeLr~kL~ 160 (165)
T 1gs9_A 104 LGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLA 160 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 3345556666666555555332 446677777777777776 456566677888776
No 185
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=32.81 E-value=3e+02 Score=25.39 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=17.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Q 027451 94 TLMGASLFLAFMIDRLHHYIREL 116 (223)
Q Consensus 94 YIsGF~LFL~lvI~R~~~li~~l 116 (223)
.+-|+...+ ..|+.++.+|+.-
T Consensus 360 ilegl~~a~-~~iD~vI~iIr~s 381 (470)
T 3ilw_A 360 ILRGLVKAL-DALDEVIALIRAS 381 (470)
T ss_dssp HHHHHHHHH-HTHHHHHHHHHHC
T ss_pred HHHHHHHHH-HHHHHHHHHHHhC
Confidence 688877775 5788888888764
No 186
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=32.79 E-value=1.1e+02 Score=27.24 Aligned_cols=11 Identities=18% Similarity=0.087 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 027451 106 IDRLHHYIREL 116 (223)
Q Consensus 106 I~R~~~li~~l 116 (223)
-.++-.+|.+.
T Consensus 379 ~~~i~~~l~~~ 389 (471)
T 3mq9_A 379 QTRITAARDGL 389 (471)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 33444444443
No 187
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=32.76 E-value=60 Score=21.65 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 027451 189 FLFEYDRLLEENQNLRNQ 206 (223)
Q Consensus 189 l~~EYDrL~~e~~~l~~~ 206 (223)
.+.|-|+|.-+|.++...
T Consensus 34 ~SQeLD~LIn~Y~k~~~~ 51 (64)
T 2c0s_A 34 FSQELDRLLNLLIELKTK 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 356778888888776543
No 188
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=32.73 E-value=62 Score=23.17 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhh
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQSEG 188 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~ 188 (223)
++..|..+++....|......+++++|...+.
T Consensus 56 e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 56 EKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344555544433
No 189
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=32.68 E-value=1e+02 Score=21.71 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 027451 157 KLKDLESELETKSKE 171 (223)
Q Consensus 157 e~~~Lk~el~~~~~e 171 (223)
|+++|..+++.++.+
T Consensus 47 EN~~Lh~~ie~l~eE 61 (83)
T 1uii_A 47 ENEKLHKEIEQKDNE 61 (83)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555443
No 190
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=32.16 E-value=1.4e+02 Score=21.24 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=12.1
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 180 VALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 180 ~aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
+.+.+..+.+.+.++.+.++.++++..+
T Consensus 80 e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 80 ETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 191
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=32.01 E-value=3.2e+02 Score=25.55 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHH
Q 027451 158 LKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQN 202 (223)
Q Consensus 158 ~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~ 202 (223)
++..+.+++....||..|+.+++.......-..+-|+.+.-+.+.
T Consensus 316 ~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~ 360 (551)
T 2b5u_A 316 VEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDA 360 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 345555566666666666667777776655566777765555443
No 192
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=31.57 E-value=1e+02 Score=24.85 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHH----HHHHHhhhHHHHHHHhHh
Q 027451 157 KLKDLESELETKS----KEANAAETNAVALRKQSE 187 (223)
Q Consensus 157 e~~~Lk~el~~~~----~el~~~~~d~~aLKkQae 187 (223)
++++|+.++++.+ ..+.++.+|.+.+|+..+
T Consensus 43 ~~~~l~~~l~e~~~~~~d~~lR~~Ae~eN~rkR~~ 77 (197)
T 1dkg_A 43 KVANLEAQLAEAQTRERDGILRVKAEMENLRRRTE 77 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433 245555566666665443
No 193
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=30.79 E-value=98 Score=26.25 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=10.5
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHH
Q 027451 146 ALEDQMTTLKLKLKDLESELETKSK 170 (223)
Q Consensus 146 ~~~~~~~~l~~e~~~Lk~el~~~~~ 170 (223)
.+..++..+.+++++|+.+++...+
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~ 82 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQ 82 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444333
No 194
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=30.59 E-value=2.5e+02 Score=25.32 Aligned_cols=42 Identities=14% Similarity=0.106 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHH
Q 027451 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLL 197 (223)
Q Consensus 156 ~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~ 197 (223)
+++++++...++...++..++++....-..++....+|.+.+
T Consensus 185 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~~~~ 226 (486)
T 3haj_A 185 EQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENM 226 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666655666665555555445555555555433
No 195
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=29.62 E-value=1.4e+02 Score=20.47 Aligned_cols=51 Identities=27% Similarity=0.374 Sum_probs=29.8
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHH
Q 027451 146 ALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRL 196 (223)
Q Consensus 146 ~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL 196 (223)
+....|..+.+.|..|+..++....+-...+.++..+-.+..+=--|-..|
T Consensus 11 ~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~el 61 (72)
T 3cve_A 11 EVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTEL 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344455566777777777777776655555555655555555543333333
No 196
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=29.20 E-value=58 Score=28.22 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=10.3
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHH
Q 027451 144 IKALEDQMTTLKLKLKDLESELE 166 (223)
Q Consensus 144 ~~~~~~~~~~l~~e~~~Lk~el~ 166 (223)
.+.+.++++.+.+|+++|+++.+
T Consensus 187 ie~L~~~~~~L~eEi~~Le~~~e 209 (315)
T 2ve7_A 187 LESLEAKNRALNEQIARLEQERS 209 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 197
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=29.13 E-value=97 Score=27.14 Aligned_cols=19 Identities=21% Similarity=0.085 Sum_probs=10.5
Q ss_pred hhHHHHHHHhHhhHHHHHH
Q 027451 176 ETNAVALRKQSEGFLFEYD 194 (223)
Q Consensus 176 ~~d~~aLKkQae~l~~EYD 194 (223)
..+++.|++|.+.++++|+
T Consensus 175 ~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 175 GADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp TCCHHHHHHHHHHHTGGGC
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 3455555665555555554
No 198
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=29.10 E-value=71 Score=17.45 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027451 154 LKLKLKDLESELETKSKE 171 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~e 171 (223)
++++...|++|+...+-|
T Consensus 5 lkqknarlkqeiaaleye 22 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYE 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 444555566655554443
No 199
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=29.06 E-value=1.5e+02 Score=25.53 Aligned_cols=56 Identities=23% Similarity=0.311 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHhHhhHHHHH-HHHHHHHHHHHHhHhh
Q 027451 154 LKLKLKDLESELETKSKEANA-AETNAVALRKQSEGFLFEY-DRLLEENQNLRNQLQS 209 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~-~~~d~~aLKkQae~l~~EY-DrL~~e~~~l~~~l~~ 209 (223)
+..++++++.+++-...++.. ...+++.++.+..-...|| +++...-+.|+.++..
T Consensus 112 L~~dlEelR~~L~Py~~el~~~l~~~~eelr~kL~Py~~EL~~~~~~~~eeLr~~L~p 169 (307)
T 2l7b_A 112 LGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAV 169 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 445566666666666655533 3557888888888888887 5555566678888764
No 200
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=29.06 E-value=2.4e+02 Score=23.09 Aligned_cols=94 Identities=11% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 027451 105 MIDRLHHYIRELRIRRKTMEAIKNQSRGFEDGKAASSEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRK 184 (223)
Q Consensus 105 vI~R~~~li~~l~~~~~~~~al~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKk 184 (223)
.-..+......+.+.+..++..-++++.+.. ...........-..++++++..+..+..++.+|+++-..--.
T Consensus 121 ~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~-------~~~~a~~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~ 193 (301)
T 2efk_A 121 AQQQLENGFKQLENSKRKFERDCREAEKAAQ-------TAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQ 193 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHhhH-HHHHHHHHHH-HHHHHH
Q 027451 185 QSEGF-LFEYDRLLEE-NQNLRN 205 (223)
Q Consensus 185 Qae~l-~~EYDrL~~e-~~~l~~ 205 (223)
.++.. ...|...+.+ .+.+|.
T Consensus 194 ~~n~~~~~~~~~~~p~~~~~lQ~ 216 (301)
T 2efk_A 194 RFNRDQAHFYFSQMPQIFDKLQD 216 (301)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 201
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=28.42 E-value=85 Score=28.27 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=12.3
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHH
Q 027451 178 NAVALRKQSEGFLFEYDRLLEENQN 202 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~e~~~ 202 (223)
+...++++.+.+..+...+.++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 76 RVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444433
No 202
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=28.17 E-value=51 Score=25.31 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=8.9
Q ss_pred HHHHHHHhHhhHHHHHHHH
Q 027451 178 NAVALRKQSEGFLFEYDRL 196 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL 196 (223)
+++++++|.+.++.+++.+
T Consensus 16 ~L~~l~~ql~~l~~~l~~l 34 (147)
T 2rjz_A 16 NLEAYKAQMKEMEESFGAL 34 (147)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444455544444444443
No 203
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=28.11 E-value=1.2e+02 Score=20.91 Aligned_cols=24 Identities=13% Similarity=0.279 Sum_probs=12.4
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHH
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQN 202 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~ 202 (223)
++-|..-.+.++.-|-||+.||+.
T Consensus 9 v~~LE~sld~LQTrfARLLaEy~s 32 (74)
T 3swf_A 9 VTRMESSVDLLQTRFARILAEYES 32 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555543
No 204
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=28.04 E-value=1.9e+02 Score=21.59 Aligned_cols=10 Identities=30% Similarity=0.418 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 027451 191 FEYDRLLEEN 200 (223)
Q Consensus 191 ~EYDrL~~e~ 200 (223)
+.||.++.|.
T Consensus 75 ~KYD~~lqe~ 84 (115)
T 3vem_A 75 AEFRRKFHEV 84 (115)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 205
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=28.04 E-value=44 Score=27.80 Aligned_cols=24 Identities=8% Similarity=0.090 Sum_probs=10.6
Q ss_pred HHHHhHHHHHH-HHHHHHHHHHHHH
Q 027451 93 ATLMGASLFLA-FMIDRLHHYIREL 116 (223)
Q Consensus 93 ~YIsGF~LFL~-lvI~R~~~li~~l 116 (223)
.|+.+|+++.+ ++++=..++|.+.
T Consensus 214 ~~f~~~~~i~~~~~lnl~~aii~~~ 238 (285)
T 3rvy_A 214 VFFIPFIFVVTFVMINLVVAICVDA 238 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555443 2334444444443
No 206
>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein; HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP: e.57.1.1
Probab=27.79 E-value=80 Score=28.49 Aligned_cols=43 Identities=7% Similarity=0.066 Sum_probs=31.2
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhcccccCCCCCC
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDWRLSHSGSKK 221 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~~~~~~~~~~ 221 (223)
++.+.++...+..++--...+|++++.+++..+||-++|=+-|
T Consensus 131 v~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~~~RK~~GnL~~r 173 (392)
T 1u7l_A 131 ITLISNESSQLDADVRATYANYNSAKTNLAAAERKKTGDLSVR 173 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeee
Confidence 4555666666666666677888888888988888887775544
No 207
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=27.75 E-value=2.4e+02 Score=25.99 Aligned_cols=6 Identities=17% Similarity=0.224 Sum_probs=2.2
Q ss_pred HHHHHH
Q 027451 117 RIRRKT 122 (223)
Q Consensus 117 ~~~~~~ 122 (223)
-.+++.
T Consensus 54 ~~l~~~ 59 (484)
T 3lss_A 54 EASKKL 59 (484)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 208
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=27.59 E-value=2.7e+02 Score=23.34 Aligned_cols=41 Identities=7% Similarity=0.029 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHH
Q 027451 156 LKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRL 196 (223)
Q Consensus 156 ~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL 196 (223)
+++++++..++....+..+|+++...--..++....+|...
T Consensus 183 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~ 223 (337)
T 2x3v_A 183 EQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQYMEG 223 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34566666666666666666665555445555555555543
No 209
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=27.46 E-value=1.5e+02 Score=26.84 Aligned_cols=27 Identities=26% Similarity=0.064 Sum_probs=12.8
Q ss_pred HHHHHHhHhhHHH------HHHHHHHHHHHHHH
Q 027451 179 AVALRKQSEGFLF------EYDRLLEENQNLRN 205 (223)
Q Consensus 179 ~~aLKkQae~l~~------EYDrL~~e~~~l~~ 205 (223)
++.+..|...+.+ |++.|.+++..+++
T Consensus 209 l~~l~~ql~ei~~~~l~~~E~e~L~~~~~~L~~ 241 (517)
T 4ad8_A 209 IDLLAFQVQEISEVSPDPGEEEGLNTELSRLSN 241 (517)
T ss_dssp HHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 4444444444444 45555544444433
No 210
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=27.45 E-value=1.8e+02 Score=24.81 Aligned_cols=12 Identities=17% Similarity=0.119 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHH
Q 027451 193 YDRLLEENQNLR 204 (223)
Q Consensus 193 YDrL~~e~~~l~ 204 (223)
|+.+++||++++
T Consensus 142 Y~~r~ee~ekak 153 (279)
T 3qwe_A 142 YVQRSEDLRARS 153 (279)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 666666665543
No 211
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=27.33 E-value=1.2e+02 Score=19.31 Aligned_cols=7 Identities=14% Similarity=0.060 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 027451 156 LKLKDLE 162 (223)
Q Consensus 156 ~e~~~Lk 162 (223)
.+|..|+
T Consensus 18 ~kVdqLs 24 (52)
T 1jcd_A 18 AKADQAS 24 (52)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 212
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=27.07 E-value=1.9e+02 Score=21.39 Aligned_cols=42 Identities=10% Similarity=0.177 Sum_probs=31.9
Q ss_pred HHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhcc
Q 027451 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQSLDW 212 (223)
Q Consensus 171 el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~ 212 (223)
.++-.+..++....+...+..+...+-++.+.|++++...+.
T Consensus 84 ~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 84 KVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445577888888888888888888888888888876544
No 213
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=26.35 E-value=1.9e+02 Score=21.19 Aligned_cols=11 Identities=27% Similarity=0.444 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 027451 156 LKLKDLESELE 166 (223)
Q Consensus 156 ~e~~~Lk~el~ 166 (223)
.++.+|+.++.
T Consensus 18 ~ei~~L~~ei~ 28 (106)
T 4e61_A 18 ETIGSLNEEIE 28 (106)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 214
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=26.32 E-value=1.7e+02 Score=20.41 Aligned_cols=20 Identities=10% Similarity=0.233 Sum_probs=9.8
Q ss_pred HHHHHHHhHhhHHHHHHHHH
Q 027451 178 NAVALRKQSEGFLFEYDRLL 197 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~ 197 (223)
.++.|.+|.+.++++.+.+.
T Consensus 80 ~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 80 REKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554443
No 215
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=26.29 E-value=80 Score=24.61 Aligned_cols=81 Identities=22% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHhHHHhHHHHHHH------------HHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 142 EEIKALEDQMTTLKLKL------------KDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 142 ~~~~~~~~~~~~l~~e~------------~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
.+...+..+........ ..+...++.....++..++++..++...+.+..|...|.++++.+...-+.
T Consensus 40 ~e~~kl~~e~~i~eas~~~~~~~~le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqg 119 (146)
T 2xnx_M 40 LEEKKKALELAIDQASQDYNRANVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQS 119 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTHHHHTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC------
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred hcccccCCCCCCC
Q 027451 210 LDWRLSHSGSKKD 222 (223)
Q Consensus 210 ~~~~~~~~~~~~~ 222 (223)
..|-+--|-.-|.
T Consensus 120 LrRDLeASReAKK 132 (146)
T 2xnx_M 120 LRRDLDASREAKK 132 (146)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
No 216
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=26.20 E-value=1.6e+02 Score=20.46 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027451 156 LKLKDLESELETKSKEA 172 (223)
Q Consensus 156 ~e~~~Lk~el~~~~~el 172 (223)
+|+++|-.+++.++.++
T Consensus 34 ~EN~~Lh~~ie~~~eEi 50 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEI 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35666666666666543
No 217
>3arc_F Cytochrome B559 subunit beta; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_F* 3a0b_F* 3a0h_F* 1w5c_F* 3kzi_F* 3bz1_F* 1s5l_F* 2axt_F* 3bz2_F* 3prq_F* 3prr_F*
Probab=25.37 E-value=53 Score=20.22 Aligned_cols=15 Identities=13% Similarity=0.042 Sum_probs=10.2
Q ss_pred chh-HHHHHHHHHHHH
Q 027451 22 KTP-LRKLLIMSLDRV 36 (223)
Q Consensus 22 PlP-~R~~~~~~l~~~ 36 (223)
|++ +||..+..+..+
T Consensus 13 PIfTvRWlAvH~lavP 28 (44)
T 3arc_F 13 PIFTVRWVAVHTLAVP 28 (44)
T ss_dssp CSSCHHHHHHHHHHHH
T ss_pred ceeeeehhhhhccccc
Confidence 543 999977766644
No 218
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=25.35 E-value=1.3e+02 Score=24.52 Aligned_cols=29 Identities=28% Similarity=0.300 Sum_probs=21.2
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 180 VALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 180 ~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
...|+|.+..|+|| =|.+.....|++|..
T Consensus 222 ~~v~~~~~k~Qrey-~LrEQlk~IqkELGe 250 (252)
T 3ljc_A 222 NRVKKQMEKSQREY-YLNEQMKAIQKELGE 250 (252)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhCC
Confidence 46788899999998 355556667887754
No 219
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=25.32 E-value=1.5e+02 Score=23.26 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHH-HHhhhHHHHHHHhHhhHH
Q 027451 158 LKDLESELETKSKEA-NAAETNAVALRKQSEGFL 190 (223)
Q Consensus 158 ~~~Lk~el~~~~~el-~~~~~d~~aLKkQae~l~ 190 (223)
++.|+..++--..++ .+++.++++|+.|..-..
T Consensus 113 ~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~p~~ 146 (185)
T 3r2p_A 113 MELYRQKVEPLRAELQEGARQKLHELQEKLSPLG 146 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444444333333 233345555555544443
No 220
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=25.28 E-value=1.9e+02 Score=25.97 Aligned_cols=10 Identities=30% Similarity=0.235 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 027451 157 KLKDLESELE 166 (223)
Q Consensus 157 e~~~Lk~el~ 166 (223)
++++++.+++
T Consensus 25 ~~~~~~~~~~ 34 (412)
T 3u06_A 25 CNEQQAAELE 34 (412)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 221
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=25.27 E-value=2.5e+02 Score=22.17 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHhh
Q 027451 155 KLKLKDLESELETKSKEANAA----ETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 155 ~~e~~~Lk~el~~~~~el~~~----~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~~ 209 (223)
..+...|..++..+..++... .-|-++++++++....--..+.++.-+.+.++..
T Consensus 84 r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~K 142 (175)
T 3lay_A 84 YTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQ 142 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555544332 2244555555555554455555565566666643
No 222
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=25.16 E-value=2.1e+02 Score=21.14 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=8.9
Q ss_pred HhHHHhHHHHHHHHHHHHHH
Q 027451 146 ALEDQMTTLKLKLKDLESEL 165 (223)
Q Consensus 146 ~~~~~~~~l~~e~~~Lk~el 165 (223)
.+.++++.+....+.|+..|
T Consensus 39 ~Lq~El~~lr~~~~~l~~~i 58 (111)
T 2v66_B 39 VLEDDLSQTRAIKEQLHKYV 58 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 223
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=24.98 E-value=1.3e+02 Score=18.64 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=12.5
Q ss_pred HHHHHHHhHhhHHHHHHHHHH
Q 027451 178 NAVALRKQSEGFLFEYDRLLE 198 (223)
Q Consensus 178 d~~aLKkQae~l~~EYDrL~~ 198 (223)
|-..|.|=..|+..|.-||-.
T Consensus 25 deqnlekiianlrdeiarlen 45 (52)
T 3he5_B 25 DEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHH
Confidence 445666666666666666543
No 224
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=24.72 E-value=2.8e+02 Score=22.40 Aligned_cols=33 Identities=6% Similarity=-0.168 Sum_probs=13.5
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHhHhhhcc
Q 027451 180 VALRKQSEGFLFEYDRLLEENQNLRNQLQSLDW 212 (223)
Q Consensus 180 ~aLKkQae~l~~EYDrL~~e~~~l~~~l~~~~~ 212 (223)
+..+.+.+..+.++.....+.+.++.+++....
T Consensus 101 ~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I 133 (277)
T 2f1m_A 101 DQALADAQQANAAVTAAKAAVETARINLAYTKV 133 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEE
Confidence 333333333333444443444444444443333
No 225
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=24.64 E-value=2e+02 Score=20.86 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHH
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRL 196 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL 196 (223)
.+...+.++.+--+|.+.+++..++|-...=.++.|.-|+
T Consensus 63 RlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~ 102 (114)
T 2xzr_A 63 RLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARI 102 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3444455555555566666666666655555555555554
No 226
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.61 E-value=2.5e+02 Score=21.89 Aligned_cols=24 Identities=4% Similarity=-0.011 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Q 027451 108 RLHHYIRELRIRRKTMEAIKNQSR 131 (223)
Q Consensus 108 R~~~li~~l~~~~~~~~al~kQa~ 131 (223)
.++.-|.....+++++....++.+
T Consensus 7 KLI~Ain~qs~LeD~L~~~R~el~ 30 (154)
T 2ocy_A 7 QLIESVDKQSHLEEQLNKSLKTIA 30 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHH
Confidence 455566666666666666665543
No 227
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=24.34 E-value=3e+02 Score=22.77 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNL 203 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l 203 (223)
+......+|.++..++.++...+.+..++.+|.+.-...--.+.+-|.++
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~ 218 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKH 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45678899999999999999999999999999988877777777777664
No 228
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=24.22 E-value=1.5e+02 Score=19.22 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=16.1
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHH
Q 027451 145 KALEDQMTTLKLKLKDLESELETKSK 170 (223)
Q Consensus 145 ~~~~~~~~~l~~e~~~Lk~el~~~~~ 170 (223)
+++.|.+=.++.++..|+++.+...+
T Consensus 6 KSlVDtVYaLkDqV~eL~qe~k~m~k 31 (56)
T 2w6b_A 6 KSLVDTVYALKDEVQELRQDNKKMKK 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777777766665554
No 229
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=24.20 E-value=1.3e+02 Score=21.02 Aligned_cols=13 Identities=23% Similarity=0.458 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 027451 154 LKLKLKDLESELE 166 (223)
Q Consensus 154 l~~e~~~Lk~el~ 166 (223)
|-++++.++.++.
T Consensus 39 Lh~~ie~~~eEi~ 51 (79)
T 2zxx_A 39 LHKEIEQKDSEIA 51 (79)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 230
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=23.97 E-value=4.2e+02 Score=24.72 Aligned_cols=66 Identities=12% Similarity=0.098 Sum_probs=0.0
Q ss_pred hHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 027451 141 SEEIKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQ 206 (223)
Q Consensus 141 ~~~~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~ 206 (223)
.++.+..++.-.....+-+.|.+.+.....|+.+++.++.++..|..+...|-....+..+.+++.
T Consensus 334 ~~~ve~~Kki~naevae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~ke 399 (602)
T 1cii_A 334 TEDVEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKE 399 (602)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 231
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=23.95 E-value=1.4e+02 Score=18.90 Aligned_cols=10 Identities=30% Similarity=0.385 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 027451 156 LKLKDLESEL 165 (223)
Q Consensus 156 ~e~~~Lk~el 165 (223)
+++.+|+.++
T Consensus 37 ~el~~Lkeel 46 (51)
T 3m91_A 37 QQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444333
No 232
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=23.83 E-value=2.1e+02 Score=20.83 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 027451 105 MIDRLHHYIRELRIRRKTMEAIKN 128 (223)
Q Consensus 105 vI~R~~~li~~l~~~~~~~~al~k 128 (223)
-+.++..-+.+.....+.++.+.+
T Consensus 23 ~~~~l~~~i~e~~~~~e~l~~l~~ 46 (133)
T 1fxk_C 23 QMEAVRATISELEILEKTLSDIQG 46 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 344555555566666666665553
No 233
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=23.64 E-value=1.1e+02 Score=25.14 Aligned_cols=12 Identities=8% Similarity=0.003 Sum_probs=6.4
Q ss_pred HHHHHHhHhhHH
Q 027451 179 AVALRKQSEGFL 190 (223)
Q Consensus 179 ~~aLKkQae~l~ 190 (223)
+++||+|..+++
T Consensus 114 IEtlK~ql~nf~ 125 (294)
T 3caz_A 114 IEEIKKEYKETD 125 (294)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhH
Confidence 455555555554
No 234
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=23.61 E-value=1.5e+02 Score=19.38 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=14.0
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhH
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNLRNQL 207 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l~~~l 207 (223)
++.|..|++.|..+-+.|..+.+.|+.++
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555444
No 235
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=23.39 E-value=44 Score=28.05 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhHhh
Q 027451 192 EYDRLLEENQNLRNQLQS 209 (223)
Q Consensus 192 EYDrL~~e~~~l~~~l~~ 209 (223)
+++.+..|+++|++.+..
T Consensus 44 ~~~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 44 EVADLKKENKDLKESLDI 61 (255)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 344566677777766653
No 236
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Probab=23.22 E-value=45 Score=25.73 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHH
Q 027451 155 KLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLL 197 (223)
Q Consensus 155 ~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~ 197 (223)
+.++++|+..++.-+.. -.-.-||+.|++...+-||+-.
T Consensus 19 k~sVKKLE~RLkKYepg----SpPALALqqqIeKTK~RFdkYg 57 (154)
T 1qzv_F 19 KQALKKLQASLKLYADD----SAPALAIKATMEXXXXXXXXXX 57 (154)
T ss_pred HHHHHHHHHHHHcCCCC----ChHHHHHHHHHHHHhccccccc
Confidence 44555555555433221 1124579999999988887643
No 237
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=23.19 E-value=1.6e+02 Score=19.16 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 027451 153 TLKLKLKDLESELE 166 (223)
Q Consensus 153 ~l~~e~~~Lk~el~ 166 (223)
.+..++..|+.++.
T Consensus 34 ~L~~~N~~L~~~i~ 47 (63)
T 1ci6_A 34 ELEKKNEALKERAD 47 (63)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444333
No 238
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.12 E-value=1.3e+02 Score=27.08 Aligned_cols=30 Identities=17% Similarity=0.063 Sum_probs=17.2
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 179 AVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 179 ~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
++-|.-|-+-+..+...+..|+..+++++.
T Consensus 58 ~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~ 87 (428)
T 4b4t_K 58 YELLTLQEDYIKDEQRHLKRELKRAQEEVK 87 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555566666566555555554
No 239
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=22.76 E-value=1e+02 Score=16.68 Aligned_cols=12 Identities=33% Similarity=0.551 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 027451 156 LKLKDLESELET 167 (223)
Q Consensus 156 ~e~~~Lk~el~~ 167 (223)
+|+++|+..+..
T Consensus 8 keledlqerlrk 19 (27)
T 3twe_A 8 KELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 240
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=22.62 E-value=1.5e+02 Score=18.50 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 027451 160 DLESELETKSKEA 172 (223)
Q Consensus 160 ~Lk~el~~~~~el 172 (223)
+...|+.+.+.|+
T Consensus 19 E~RkElqK~K~EI 31 (45)
T 1use_A 19 EVKKELQKVKEEI 31 (45)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 241
>3vjf_A WA20; protein design, de novo protein, binary patterned design, FO bundle, rudimentary enzymatic activitie; 2.20A {Synthetic construct}
Probab=22.48 E-value=2e+02 Score=20.01 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHH
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEEN 200 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~ 200 (223)
-++..+.-+....+...+-+-++-.+-.|.|++-.||...+.-+
T Consensus 8 lvehikellqqlnknwhrhqgnlhdmnqqmeqlfqefqhfmqgn 51 (102)
T 3vjf_A 8 LVEHIKELLQQLNKNWHRHQGNLHDMNQQMEQLFQEFQHFMQGN 51 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHHhcC
Confidence 34445555566667888888899999999999999987665443
No 242
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=22.46 E-value=4.9e+02 Score=24.44 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 027451 188 GFLFEYDRLLEENQNLRNQ 206 (223)
Q Consensus 188 ~l~~EYDrL~~e~~~l~~~ 206 (223)
|++.+-+.|..|.+.|+++
T Consensus 564 g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 564 GFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344445555555555555
No 243
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=22.26 E-value=1.3e+02 Score=21.71 Aligned_cols=41 Identities=12% Similarity=0.206 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHH
Q 027451 157 KLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQ 201 (223)
Q Consensus 157 e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~ 201 (223)
++++|+.++..++.++. .+.-|+.|++=....|..=-...+
T Consensus 39 ~ideLKe~i~q~~~~~E----~i~vL~aQ~~iY~~DF~aERaaRE 79 (96)
T 3fx0_A 39 VIDKLKEEAEQHKIVME----TVPVLKAQADIYKADFQAERQARE 79 (96)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666655554332 478888998888777754433333
No 244
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=22.19 E-value=1.1e+02 Score=17.76 Aligned_cols=9 Identities=22% Similarity=0.361 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 027451 154 LKLKLKDLE 162 (223)
Q Consensus 154 l~~e~~~Lk 162 (223)
+..||..|+
T Consensus 19 Le~EV~RLk 27 (33)
T 3m48_A 19 LENEVARLK 27 (33)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 245
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.16 E-value=2.1e+02 Score=20.14 Aligned_cols=16 Identities=13% Similarity=0.142 Sum_probs=6.9
Q ss_pred HHHHHHhHhhHHHHHH
Q 027451 179 AVALRKQSEGFLFEYD 194 (223)
Q Consensus 179 ~~aLKkQae~l~~EYD 194 (223)
+..+..+.+.+..+|.
T Consensus 87 i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 87 KSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 246
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=22.12 E-value=2.9e+02 Score=24.24 Aligned_cols=18 Identities=17% Similarity=0.169 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027451 155 KLKLKDLESELETKSKEA 172 (223)
Q Consensus 155 ~~e~~~Lk~el~~~~~el 172 (223)
.+++++|++++++.+.++
T Consensus 253 ~~~~~~~~~~~~~~~~~~ 270 (426)
T 1lrz_A 253 NEERDILNKDLNKALKDI 270 (426)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444444444444333
No 247
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=22.08 E-value=2e+02 Score=19.71 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027451 154 LKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLR 204 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~ 204 (223)
...|+..|+..+.-+.+ |.+.|--..-+++-|-+=|.+..++++
T Consensus 30 Ke~eI~~L~e~i~lk~k-------d~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 30 KEQEIRRLKEVIALKNK-------NTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhcc-------cHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 34455566665555555 344444444455555555555555444
No 248
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=22.08 E-value=1.9e+02 Score=19.70 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Q 027451 160 DLESELETKSKEANAAETNAVALRK 184 (223)
Q Consensus 160 ~Lk~el~~~~~el~~~~~d~~aLKk 184 (223)
.++.|+...+-.+..+|.++.||+.
T Consensus 19 a~~~ev~t~~~~l~~~e~~vqaL~~ 43 (74)
T 1avy_A 19 SVRQEVNTAKGNISSLQGDVQALQE 43 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhheeeccccchhhhhhhhhHHHHh
Confidence 3333344444445555556777764
No 249
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=21.85 E-value=1.2e+02 Score=23.04 Aligned_cols=8 Identities=38% Similarity=0.272 Sum_probs=3.0
Q ss_pred HHHHHhHh
Q 027451 180 VALRKQSE 187 (223)
Q Consensus 180 ~aLKkQae 187 (223)
+.|+++.+
T Consensus 26 ~~l~~~l~ 33 (182)
T 3kqg_A 26 RALQGSLE 33 (182)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 250
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=21.61 E-value=1.8e+02 Score=19.19 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=23.9
Q ss_pred HHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHh
Q 027451 171 EANAAETNAVALRKQSEGFLFEYDRLLEENQNLRNQLQ 208 (223)
Q Consensus 171 el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~~l~ 208 (223)
.|..+|+.+.-|-|=-.+++.|..++..+.++||....
T Consensus 21 ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~ 58 (63)
T 2w6a_A 21 ALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENL 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhh
Confidence 45555556666666666677777666666666665543
No 251
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=21.17 E-value=73 Score=26.69 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=6.9
Q ss_pred HhHHHHHHHHHHHHHH
Q 027451 150 QMTTLKLKLKDLESEL 165 (223)
Q Consensus 150 ~~~~l~~e~~~Lk~el 165 (223)
||+.|++|+.+|+.++
T Consensus 27 eN~~Lk~e~~~l~~~~ 42 (255)
T 2j5u_A 27 ENQHLKERLEELAQLE 42 (255)
T ss_dssp TTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 252
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=21.00 E-value=2.5e+02 Score=20.58 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027451 154 LKLKLKDLESELETKSKEANAA 175 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el~~~ 175 (223)
+.+|+...+.+|.....+|+.|
T Consensus 40 LQ~Ei~~~E~QL~iArQKLkdA 61 (107)
T 2k48_A 40 LQENITAHEQQLVTARQKLKDA 61 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 253
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus}
Probab=20.89 E-value=2.8e+02 Score=24.63 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027451 154 LKLKLKDLESELETKSKEA 172 (223)
Q Consensus 154 l~~e~~~Lk~el~~~~~el 172 (223)
+..++.+|+..++..++++
T Consensus 292 l~~d~~~L~~~l~~~~~e~ 310 (402)
T 4eah_A 292 VLLDVKELGRGMELIRREC 310 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4455666666666555543
No 254
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=20.84 E-value=2.7e+02 Score=20.89 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=8.7
Q ss_pred HHHhHHHhHHHHHHHHHHH
Q 027451 144 IKALEDQMTTLKLKLKDLE 162 (223)
Q Consensus 144 ~~~~~~~~~~l~~e~~~Lk 162 (223)
.....+|++.+.++++.|+
T Consensus 38 i~qf~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 38 YAELEKEKATLEAEIARLR 56 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 255
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=20.23 E-value=3.5e+02 Score=21.95 Aligned_cols=62 Identities=15% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027451 144 IKALEDQMTTLKLKLKDLESELETKSKEANAAETNAVALRKQSEGFLFEYDRLLEENQNLRN 205 (223)
Q Consensus 144 ~~~~~~~~~~l~~e~~~Lk~el~~~~~el~~~~~d~~aLKkQae~l~~EYDrL~~e~~~l~~ 205 (223)
.+.+..=.....+..++.+.+.....+++..+..+++..|+...+..+|+++.....++...
T Consensus 104 ~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~~~~~ 165 (305)
T 2efl_A 104 IVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDA 165 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 256
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=20.18 E-value=4.1e+02 Score=22.70 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=15.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 027451 149 DQMTTLKLKLKDLESELETKSKEA 172 (223)
Q Consensus 149 ~~~~~l~~e~~~Lk~el~~~~~el 172 (223)
.+++.+.++++.|++|+++++++.
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~ 208 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQER 208 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777777665543
Done!