BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027452
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HTA|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Orthorhombic Form
pdb|2HTA|B Chain B, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Orthorhombic Form
pdb|2HTB|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|B Chain B, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|C Chain C, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|D Chain D, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
Length = 309
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 102/218 (46%), Gaps = 28/218 (12%)
Query: 11 GGVPHCFPQFGPGPMQ---QHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMW--D 65
GGVP C+P FGP Q HGFARN+ W++ + ++T EL+ +R W D
Sbjct: 90 GGVPICWPWFGPAAQQGLPSHGFARNLPWALKAHNEDDNGVMLTFELQSSEATRKYWPHD 149
Query: 66 FSFQALFKVILNTKSISTELTITNTDNKPFSFSSALHTYFRAS-VTGASVKGLKGCKTLN 124
F+ A FKV K+ EL + F+ +SALH+YF + V GL G + ++
Sbjct: 150 FTLLARFKV---GKTCEIELEA----HGEFATTSALHSYFNVGDIANVKVSGL-GDRFID 201
Query: 125 KDPDPKNPMEGKEERDRVTFPGFVDCIYL--DAPSVVHLDNGLGDTITIRNTNWSDAVLW 182
K D K EG TFP D +YL +A SV+H D L TI + + + + V W
Sbjct: 202 KVNDAK---EGVLTDGIQTFPDRTDRVYLNPEACSVIH-DATLNRTIDVVHHHHLNVVGW 257
Query: 183 NPHMQMEAC--------YKDFVCVENAKIGKVQLEPEQ 212
NP + YK FVCVE Q E+
Sbjct: 258 NPGPALSVSMGDMPDDGYKTFVCVETVYATAPQQATEE 295
>pdb|2CIR|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase. Complex With
Glucose-6-Phosphate
pdb|2CIS|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase. Complex With
Tagatose-6-Phosphate
Length = 297
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 96/238 (40%), Gaps = 37/238 (15%)
Query: 11 GGVPHCFPQFGP-------GPMQQHGFARNMDWSILDSENVEGNPVITLELK---DGPYS 60
GG+P FP FG + QHG ARN W L + E P + LK P
Sbjct: 58 GGIPLVFPVFGKNSTDEHLSKLPQHGLARNSTWEFL-GQTKENPPTVQFGLKPEIANPEL 116
Query: 61 RAMWDFSFQALFKVILNTKSISTELTITNTDN-KPFSFSSALHTYFRAS-VTGASVKGLK 118
+W + + V L + + T + + NT + K F+ HTYFR + G V L
Sbjct: 117 TKLWPMDYLLILTVELGSDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLA 176
Query: 119 GCKT----LNKDPDPKNPMEGKEERDRVTFPGFVDCIY--LDAPSVVHLDNGLGDTITIR 172
G K L + K+P+ VTF D IY + A + + + T++
Sbjct: 177 GMKLYDQLLKESYVDKHPV--------VTFNQETDVIYQNVSAERAIQIVDKGVQIHTLK 228
Query: 173 NTNWSDAVLWNPHMQMEACYKDF---------VCVENAKIGK-VQLEPEQSWTAKQHL 220
N D V+WNP ++ DF +C+E + + L P + W A Q L
Sbjct: 229 RYNLPDTVVWNPWIEKSQGMADFEPKTGYQQMICIEPGHVHDFISLAPGKKWNAYQLL 286
>pdb|2CIQ|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase
Length = 297
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 96/238 (40%), Gaps = 37/238 (15%)
Query: 11 GGVPHCFPQFGP-------GPMQQHGFARNMDWSILDSENVEGNPVITLELK---DGPYS 60
GG+P FP FG + QHG ARN W L + E P + LK P
Sbjct: 58 GGIPLVFPVFGKNSTDEHLSKLPQHGLARNSTWEFL-GQTKENPPTVQFGLKPEIANPEL 116
Query: 61 RAMWDFSFQALFKVILNTKSISTELTITNTDN-KPFSFSSALHTYFRAS-VTGASVKGLK 118
+W + + V L + + T + + NT + K F+ HTYFR + G V L
Sbjct: 117 TKLWPMDYLLILTVELGSDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLA 176
Query: 119 GCKT----LNKDPDPKNPMEGKEERDRVTFPGFVDCIY--LDAPSVVHLDNGLGDTITIR 172
G K L + K+P+ VTF D IY + A + + + T++
Sbjct: 177 GMKLYDQLLKESYVDKHPV--------VTFNQETDVIYQNVSAERAIQIVDKGVQIHTLK 228
Query: 173 NTNWSDAVLWNPHMQMEACYKDF---------VCVENAKIGK-VQLEPEQSWTAKQHL 220
N D V+WNP ++ DF +C+E + + L P + W A Q L
Sbjct: 229 RYNLPDTVVWNPWIEKSQGMADFEPKTGYQQMICIEPGHVHDFISLAPGKKWNAYQLL 286
>pdb|1JOV|A Chain A, Crystal Structure Analysis Of Hi1317
Length = 270
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 90/215 (41%), Gaps = 55/215 (25%)
Query: 11 GGVPHCFPQFGPGPMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQA 70
GGVP C+P FG HG AR W + Y ++ +
Sbjct: 71 GGVPICYPWFGGVKQPAHGTARIRLWQL------------------SHYYISVHKVRLE- 111
Query: 71 LFKVILNTKSISTELTITNTDNKPFSFS--------SALHTYFR-ASVTGASVKGL-KGC 120
F++ + I ++++ TD +F+ +ALHTYF + V+GL + C
Sbjct: 112 -FELFSDLNIIEAKVSMVFTDKCHLTFTHYGEESAQAALHTYFNIGDINQVEVQGLPETC 170
Query: 121 -KTLNKD----PDPKNPMEGKEERDRVTFPGFVDCIYLDAPSVVH--LDNGLGDTITIRN 173
+LN+ P P++ E VDCIY A ++ + LD TI + +
Sbjct: 171 FNSLNQQQENVPSPRHISEN------------VDCIY-SAENMQNQILDKSFNRTIALHH 217
Query: 174 TNWSDAVLWNP-HMQM----EACYKDFVCVENAKI 203
N S VLWNP H + E Y+ +C+E A+I
Sbjct: 218 HNASQFVLWNPWHKKTSGMSETGYQKMLCLETARI 252
>pdb|3K25|A Chain A, Crystal Structure Of Slr1438 Protein From Synechocystis
Sp. Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr112
pdb|3K25|B Chain B, Crystal Structure Of Slr1438 Protein From Synechocystis
Sp. Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr112
Length = 289
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 13/107 (12%)
Query: 11 GGVPHCFPQFGPGP------------MQQHGFARNMDWSILDSENVEGNPVITLELKDGP 58
GG+P FP G P ++QHGFAR++ W ++ + + N + L L
Sbjct: 62 GGIPILFPICGNLPQDQFNHAGKSYRLKQHGFARDLPWEVI-GQQTQDNARLDLRLSHND 120
Query: 59 YSRAMWDFSFQALFKVILNTKSISTELTITNTDNKPFSFSSALHTYF 105
+ + F+F+ +F L S+ E I N ++ FS H YF
Sbjct: 121 ATLEAFPFAFELVFSYQLQGHSLRIEQRIANLGDQRXPFSLGFHPYF 167
>pdb|3Q1N|A Chain A, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Lsei_2598) From Lactobacillus Casei Atcc 334 At 1.61 A
Resolution
Length = 294
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 64/171 (37%), Gaps = 24/171 (14%)
Query: 24 PMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSIST 83
P QHGFAR+ D+ + D + + +T + + F + L +S
Sbjct: 69 PXSQHGFARDYDFDVSD----KSDSAVTFTQHQNAETLKKFPFEYTLAVTYXLTDGGLSV 124
Query: 84 ELTITNTDNKPFSFSSALHTYFRASVTGASVKGLKGCKTLNKDPDPKNPMEGKEERDRVT 143
T+TN D+K F+ H F GLK + + P+ +R +
Sbjct: 125 HYTVTNDDSKSXPFALGFHPAFNV--------GLKADGSFDDYDLTVEPLNSPLQRFGIG 176
Query: 144 FPGFVDCIYLDAPS-------VVH--LDNGLGDTITIRNTNWSDAVLWNPH 185
F + D P + H LD GL + + N+ + A L +PH
Sbjct: 177 PVPFRNGDVEDIPGAEGNRLPLTHDLLDGGL---VILANSEIAKATLASPH 224
>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical
Protein Kinase C-Iota
Length = 364
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 5 YLHWDSGGVPHCFPQFGPGPMQQHGFARNMDWSILDSENV 44
+L+ D C PQ G +Q H F RN+DW +++ + V
Sbjct: 264 FLNKDPKERLGCLPQTGFADIQGHPFFRNVDWDMMEQKQV 303
>pdb|3DCD|A Chain A, X-Ray Structure Of The Galactose Mutarotase Related Enzyme
Q5fkd7 From Lactobacillus Acidophilus At The Resolution
1.9a. Northeast Structural Genomics Consortium Target
Lar33.
pdb|3DCD|B Chain B, X-Ray Structure Of The Galactose Mutarotase Related Enzyme
Q5fkd7 From Lactobacillus Acidophilus At The Resolution
1.9a. Northeast Structural Genomics Consortium Target
Lar33
Length = 307
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 25 MQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSISTE 84
+ QHGFARN D+ + EN IT LKD +R ++ F F+ L +
Sbjct: 70 LGQHGFARNADFEV---EN-HTKESITFLLKDNEETRKVYPFKFEFRVNYNLXNNLLEEN 125
Query: 85 LTITNTDNKPFSFSSALHTYF 105
++ N ++ F H F
Sbjct: 126 FSVVNKSDETXIFGVGGHPGF 146
>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|B Chain B, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|C Chain C, A Novel Small Molecule Apkc Inhibitor
Length = 349
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 16 CFPQFGPGPMQQHGFARNMDWSILDSENV 44
C PQ G +Q H F RN+DW +++ + V
Sbjct: 260 CHPQTGFADIQGHPFFRNVDWDMMEQKQV 288
>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From
Par-3
Length = 396
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 16 CFPQFGPGPMQQHGFARNMDWSILDSENV 44
C PQ G +Q H F RN+DW +++ + V
Sbjct: 307 CHPQTGFADIQGHPFFRNVDWDMMEQKQV 335
>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8W|B Chain B, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|B Chain B, Crystal Structure Of Pkciota Kinase Domain
Length = 345
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 16 CFPQFGPGPMQQHGFARNMDWSILDSENV 44
C PQ G +Q H F RN+DW +++ + V
Sbjct: 264 CHPQTGFADIQGHPFFRNVDWDMMEQKQV 292
>pdb|2KLT|A Chain A, Second Ca2+ Binding Domain Of Ncx1.3
Length = 163
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 115 KGLKGCKTLNKDPDPKNPMEGKEERDR 141
+G+KG T+ ++ D K P+ KEE +R
Sbjct: 106 RGMKGGFTITEEYDDKQPLTSKEEEER 132
>pdb|4EIS|B Chain B, Structural Basis For Substrate Targeting And Catalysis By
Fungal Polysaccharide Monooxygenases (Pmo-3)
Length = 225
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 148 VDCIYLDAPSVVHLDNGLGDTITIRNTNWSDA 179
+ C AP+ +H G T+T+R T W D+
Sbjct: 50 IQCNADSAPAKLHASAAAGSTVTLRWTIWPDS 81
>pdb|4EIS|A Chain A, Structural Basis For Substrate Targeting And Catalysis By
Fungal Polysaccharide Monooxygenases (Pmo-3)
Length = 225
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 148 VDCIYLDAPSVVHLDNGLGDTITIRNTNWSDA 179
+ C AP+ +H G T+T+R T W D+
Sbjct: 50 IQCNADSAPAKLHASAAAGSTVTLRWTIWPDS 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,616,028
Number of Sequences: 62578
Number of extensions: 322204
Number of successful extensions: 656
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 636
Number of HSP's gapped (non-prelim): 17
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)