Query 027452
Match_columns 223
No_of_seqs 222 out of 1171
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 10:07:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027452.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027452hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1594 Uncharacterized enzyme 100.0 5.6E-53 1.2E-57 331.7 21.6 212 8-222 70-296 (305)
2 cd09020 D-hex-6-P-epi_like D-h 100.0 1.4E-52 3E-57 346.3 23.6 210 8-221 45-269 (269)
3 cd09025 Aldose_epim_Slr1438 Al 100.0 1.3E-43 2.7E-48 293.4 20.2 199 8-221 49-271 (271)
4 COG0676 Uncharacterized enzyme 100.0 1.4E-42 3.1E-47 277.5 16.7 200 8-222 70-284 (287)
5 cd09024 Aldose_epim_lacX Aldos 100.0 7.3E-40 1.6E-44 273.2 22.2 204 10-222 41-288 (288)
6 cd09021 Aldose_epim_Ec_YphB al 100.0 5.1E-40 1.1E-44 272.3 20.9 200 8-221 35-273 (273)
7 PRK15172 putative aldose-1-epi 100.0 3.9E-35 8.5E-40 245.7 23.6 200 12-223 55-298 (300)
8 cd09022 Aldose_epim_Ec_YihR Al 100.0 3.6E-35 7.8E-40 244.6 21.8 200 13-220 37-284 (284)
9 cd01081 Aldose_epim aldose 1-e 100.0 4.2E-35 9E-40 243.5 21.4 202 8-218 37-283 (284)
10 PF01263 Aldose_epim: Aldose 1 100.0 2.4E-33 5.2E-38 235.0 16.0 205 12-221 70-300 (300)
11 COG2017 GalM Galactose mutarot 100.0 6.1E-32 1.3E-36 226.9 21.6 208 8-223 56-306 (308)
12 cd09019 galactose_mutarotase_l 100.0 2.8E-30 6.1E-35 218.9 21.1 185 28-222 92-326 (326)
13 PLN00194 aldose 1-epimerase; P 100.0 2E-28 4.4E-33 208.1 22.1 195 24-223 93-336 (337)
14 TIGR02636 galM_Leloir galactos 100.0 6.1E-28 1.3E-32 205.0 21.1 191 24-223 88-335 (335)
15 PRK11055 galM galactose-1-epim 99.9 7.4E-26 1.6E-30 192.3 22.0 190 24-222 94-339 (342)
16 PTZ00485 aldolase 1-epimerase; 99.9 1.7E-23 3.6E-28 178.8 22.4 190 28-222 107-368 (376)
17 cd09023 Aldose_epim_Ec_c4013 A 99.9 1.5E-21 3.2E-26 162.7 14.9 185 24-218 70-283 (284)
18 KOG1604 Predicted mutarotase [ 99.8 1.2E-17 2.6E-22 137.1 16.6 191 24-222 106-349 (353)
19 cd09269 deoxyribose_mutarotase 99.5 7.2E-13 1.6E-17 110.4 15.2 190 24-220 61-292 (293)
20 PF14486 DUF4432: Domain of un 99.2 4.6E-10 9.9E-15 94.2 11.7 187 24-222 85-302 (302)
21 PF14315 DUF4380: Domain of un 93.3 0.5 1.1E-05 39.2 7.9 55 33-98 87-143 (274)
22 COG0832 UreB Urea amidohydrola 90.6 0.43 9.4E-06 32.9 3.7 41 73-115 12-52 (106)
23 PF00699 Urease_beta: Urease b 89.7 0.42 9.1E-06 33.1 3.0 40 74-115 12-51 (100)
24 TIGR00192 urease_beta urease, 89.7 0.54 1.2E-05 32.6 3.6 40 74-115 13-52 (101)
25 cd00407 Urease_beta Urease bet 89.7 0.51 1.1E-05 32.7 3.5 40 74-115 13-52 (101)
26 PRK13203 ureB urease subunit b 89.4 0.56 1.2E-05 32.6 3.5 40 74-115 13-52 (102)
27 PRK13202 ureB urease subunit b 87.7 0.88 1.9E-05 31.7 3.6 40 74-115 13-53 (104)
28 PRK13201 ureB urease subunit b 86.7 0.98 2.1E-05 32.9 3.5 40 74-115 13-52 (136)
29 PRK13205 ureB urease subunit b 86.5 1 2.2E-05 33.6 3.5 40 74-115 13-52 (162)
30 PRK13204 ureB urease subunit b 85.6 1.2 2.6E-05 33.3 3.5 51 63-115 24-75 (159)
31 PRK13198 ureB urease subunit b 85.2 1.3 2.7E-05 33.1 3.5 51 63-115 29-80 (158)
32 PF09095 DUF1926: Domain of un 81.8 6.4 0.00014 32.8 6.9 54 33-97 123-176 (278)
33 PF05506 DUF756: Domain of unk 81.4 5.6 0.00012 26.8 5.4 39 64-104 5-43 (89)
34 PRK13192 bifunctional urease s 79.8 2.3 5E-05 33.4 3.3 51 63-115 110-161 (208)
35 PRK13986 urease subunit alpha; 77.9 2.7 5.8E-05 33.4 3.2 51 63-115 106-157 (225)
36 PRK05089 cytochrome C oxidase 76.3 15 0.00033 28.7 7.0 51 47-99 62-114 (188)
37 TIGR03593 yidC_nterm membrane 72.3 23 0.00051 30.5 8.0 63 33-107 144-210 (366)
38 PF04744 Monooxygenase_B: Mono 69.3 5.9 0.00013 34.1 3.5 28 71-98 255-282 (381)
39 TIGR03079 CH4_NH3mon_ox_B meth 69.2 6.8 0.00015 33.7 3.8 26 73-98 276-301 (399)
40 PF12690 BsuPI: Intracellular 68.3 8.2 0.00018 25.8 3.4 20 80-99 1-20 (82)
41 PF14849 YidC_periplas: YidC p 63.7 45 0.00097 27.2 7.7 58 32-97 68-131 (270)
42 COG2835 Uncharacterized conser 60.4 3.6 7.9E-05 25.7 0.5 13 8-20 37-49 (60)
43 PF04442 CtaG_Cox11: Cytochrom 59.8 22 0.00047 26.9 4.6 49 47-97 35-85 (152)
44 PF00207 A2M: Alpha-2-macroglo 58.2 29 0.00062 23.4 4.7 35 65-99 55-90 (92)
45 PRK01318 membrane protein inse 57.3 58 0.0013 29.8 7.8 43 47-97 126-170 (521)
46 PTZ00128 cytochrome c oxidase 55.7 1.1E+02 0.0023 24.9 8.1 52 47-100 106-159 (232)
47 PF06030 DUF916: Bacterial pro 44.5 81 0.0018 22.7 5.5 29 78-106 26-54 (121)
48 PF06165 Glyco_transf_36: Glyc 42.7 1.2E+02 0.0025 21.3 6.1 38 67-106 49-88 (110)
49 PLN02303 urease 41.5 29 0.00062 33.5 3.3 30 74-105 143-172 (837)
50 PRK11827 hypothetical protein; 41.1 9.8 0.00021 23.9 0.2 13 8-20 37-49 (60)
51 TIGR01451 B_ant_repeat conserv 39.9 42 0.00091 20.2 2.9 18 78-95 11-28 (53)
52 PF14310 Fn3-like: Fibronectin 39.7 41 0.00089 21.4 3.0 17 205-221 26-42 (71)
53 COG3175 COX11 Cytochrome oxida 39.3 88 0.0019 24.4 5.1 49 48-98 62-112 (195)
54 PF00553 CBM_2: Cellulose bind 39.1 83 0.0018 21.6 4.7 35 71-108 2-39 (101)
55 PF00345 PapD_N: Pili and flag 37.0 80 0.0017 22.3 4.5 27 74-100 9-35 (122)
56 PF01345 DUF11: Domain of unkn 35.6 52 0.0011 21.1 3.0 17 78-94 40-56 (76)
57 PF13629 T2SS-T3SS_pil_N: Pilu 33.8 1.3E+02 0.0028 19.2 5.1 46 141-186 14-61 (72)
58 PF07610 DUF1573: Protein of u 32.7 48 0.001 19.1 2.2 13 85-97 2-14 (45)
59 PF11611 DUF4352: Domain of un 32.7 60 0.0013 22.7 3.2 26 80-108 37-62 (123)
60 PF09624 DUF2393: Protein of u 32.5 1.1E+02 0.0023 22.6 4.7 32 64-95 46-78 (149)
61 PF00942 CBM_3: Cellulose bind 32.2 56 0.0012 21.7 2.8 32 78-109 12-44 (86)
62 PF03351 DOMON: DOMON domain; 31.4 1.5E+02 0.0033 20.6 5.2 35 69-103 4-38 (124)
63 PF06586 TraK: TraK protein; 30.9 1.3E+02 0.0029 24.0 5.3 34 64-97 170-204 (234)
64 PF14742 GDE_N_bis: N-terminal 29.3 2.7E+02 0.0059 21.6 9.1 37 64-101 77-113 (194)
65 PF10633 NPCBM_assoc: NPCBM-as 27.7 70 0.0015 20.6 2.7 17 206-222 44-60 (78)
66 PF02120 Flg_hook: Flagellar h 26.3 1.1E+02 0.0024 19.9 3.5 22 69-90 26-47 (85)
67 PF02883 Alpha_adaptinC2: Adap 25.6 1.9E+02 0.0041 20.0 4.8 37 69-108 12-50 (115)
68 PF06280 DUF1034: Fn3-like dom 24.6 1.6E+02 0.0036 20.3 4.3 25 78-102 7-31 (112)
69 smart00809 Alpha_adaptinC2 Ada 24.1 2.1E+02 0.0045 19.3 4.7 18 78-95 17-34 (104)
70 PF09299 Mu-transpos_C: Mu tra 24.0 1.2E+02 0.0025 18.7 3.1 26 165-198 34-61 (62)
71 cd06535 CIDE_N_CAD CIDE_N doma 23.8 32 0.00069 22.8 0.4 22 194-216 56-77 (77)
72 PRK15098 beta-D-glucoside gluc 23.3 61 0.0013 31.2 2.3 32 62-93 638-681 (765)
73 TIGR03067 Planc_TIGR03067 Plan 23.0 1.7E+02 0.0037 20.4 4.1 17 71-87 80-96 (107)
74 PF14874 PapD-like: Flagellar- 23.0 2.4E+02 0.0053 18.8 5.3 23 78-100 19-41 (102)
75 PF06205 GT36_AF: Glycosyltran 21.5 1.4E+02 0.003 20.1 3.2 16 206-221 68-83 (90)
76 TIGR03096 nitroso_cyanin nitro 21.4 3.4E+02 0.0074 20.0 6.2 21 82-102 70-90 (135)
77 cd01759 PLAT_PL PLAT/LH2 domai 21.2 2.3E+02 0.005 20.1 4.4 23 78-100 16-38 (113)
78 PF05753 TRAP_beta: Translocon 21.1 86 0.0019 24.3 2.4 21 74-94 33-53 (181)
79 PF14796 AP3B1_C: Clathrin-ada 21.0 2.1E+02 0.0045 21.4 4.3 11 77-87 65-75 (145)
80 PF10065 DUF2303: Uncharacteri 20.8 1.4E+02 0.0031 24.8 3.8 25 65-89 221-245 (276)
81 PF07705 CARDB: CARDB; InterP 20.0 1.2E+02 0.0025 20.1 2.7 17 78-94 18-34 (101)
82 TIGR03066 Gem_osc_para_1 Gemma 20.0 3E+02 0.0065 19.6 4.7 19 68-86 57-75 (111)
No 1
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-53 Score=331.75 Aligned_cols=212 Identities=38% Similarity=0.675 Sum_probs=191.8
Q ss_pred cccccccEEcCCCCC-CCCCCceeEeeCCcEEEeeecCC---CccEEEEEEecCccccccCCcceEEEEEEEEeCCcEEE
Q 027452 8 WDSGGVPHCFPQFGP-GPMQQHGFARNMDWSILDSENVE---GNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSIST 83 (223)
Q Consensus 8 ~~rgG~PvlfP~~g~-~~~~~HGf~r~~~w~v~~~~~~~---~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L~i 83 (223)
+||||+|+|||+||. |.+++|||||++.|+++...... ..+.|.|.|.+++++++.||+.|++++++.|.++.|+.
T Consensus 70 pIRGGIP~~FPQFG~~g~l~qHGFaRn~~W~v~~~p~~lp~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~~lrv~l~~g~Lt~ 149 (305)
T KOG1594|consen 70 PIRGGIPICFPQFGNFGSLPQHGFARNRFWEVENNPPPLPSLGKATVDLILKSSEDDLKIWPHSFELRLRVSLGDGELTL 149 (305)
T ss_pred cccCCcceEeeccCCCCcccccccccceeeEeccCCCCCCcCCceeEEEEecCChhhhhhCCcceEEEEEEEEcCCceEE
Confidence 799999999999998 99999999999999998765322 24789999999999999999999999999999999999
Q ss_pred EEEEEeCCCCcEEEeeeccceEEEeece-eEEecccCCeeecCCCCCCCCCCCccccceeecCCCcceEEeCCCCeEEE-
Q 027452 84 ELTITNTDNKPFSFSSALHTYFRASVTG-ASVKGLKGCKTLNKDPDPKNPMEGKEERDRVTFPGFVDCIYLDAPSVVHL- 161 (223)
Q Consensus 84 ~~~v~N~~~~~~p~~~g~HpyF~~~~~~-~~i~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~D~~y~~~~~~~~l- 161 (223)
+.+|+|++++|+-|++++|+||+++|++ ++++|+++++|+|++...... +++++.+.|++++|++|...+..+.|
T Consensus 150 ~~rV~Ntd~KpFsF~~alHtYf~vsdisevrveGL~tldylD~~~~~~~~---tE~~davTF~~e~DrvYl~tp~e~aI~ 226 (305)
T KOG1594|consen 150 TSRVRNTDSKPFSFSFALHTYFRVSDISEVRVEGLETLDYLDNLKNRERF---TEQRDAVTFNSEVDRVYLNTPTELAIF 226 (305)
T ss_pred EEEeecCCCCceEEEeEeeeeEeecccceEEEeccccccccccccchhhc---cccCceEeeccceeeEEecCCceEEEE
Confidence 9999999999999999999999999996 999999998888877654432 45678999999999999999888887
Q ss_pred eCCCCCeEEEEeCCCCcEEEeCCCCCC--------CCCCCceEEeccCceec-eEECCCCeEEEEEEEEe
Q 027452 162 DNGLGDTITIRNTNWSDAVLWNPHMQM--------EACYKDFVCVENAKIGK-VQLEPEQSWTAKQHLSI 222 (223)
Q Consensus 162 ~~~~~~~l~i~~~~~~~~vvwtp~~~~--------~~~~~~~vCiEP~~~~~-~~L~pGe~~~~~~~i~v 222 (223)
|...++++.|...++|+.||||||.++ +++|+.|+|||+..++. ++|+||++|++.+.+++
T Consensus 227 dh~~krti~l~k~g~pDaVVWNPW~kksk~maD~gde~Y~~mlCVe~a~v~~pI~L~PG~eW~g~q~Lsi 296 (305)
T KOG1594|consen 227 DHEKKRTIVLKKEGLPDAVVWNPWDKKSKTMADFGDEDYKHMLCVESAAVESPITLKPGEEWKGRQLLSI 296 (305)
T ss_pred EeccccEEEEeccCCCceEEeChhHhhhhhhhhccccccceeEEecccccCCceeecCCccceeEEEEEE
Confidence 888999999999999999999999865 67899999999999885 99999999999998765
No 2
>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.
Probab=100.00 E-value=1.4e-52 Score=346.29 Aligned_cols=210 Identities=40% Similarity=0.723 Sum_probs=182.7
Q ss_pred cccccccEEcCCCCC-C---CCCCceeEeeCCcEEEeeecCCCccEEEEEEecCccccccCCcceEEEEEEEEeCCcEEE
Q 027452 8 WDSGGVPHCFPQFGP-G---PMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSIST 83 (223)
Q Consensus 8 ~~rgG~PvlfP~~g~-~---~~~~HGf~r~~~w~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L~i 83 (223)
.||||+||||||||+ . ++++|||||++.|+|++.+.+++..+++|.+.+++.++++|||+|+++++|+|.+++|++
T Consensus 45 ~irgGiPvlfP~~g~~~~~~~~~~HGfaR~~~W~l~~~~~~~~~~~l~l~l~~~~~~~~~~P~~f~l~~~~~L~~~~L~~ 124 (269)
T cd09020 45 AIRGGIPVCWPWFGPHGPNADLPAHGFARTRLWELLEVSEDEDGVTVSLELDDTDETRAIWPHAFELRLTVTLGFDTLEL 124 (269)
T ss_pred cccCCCeEeeeccCCCCCCCCCCcceeeecCceEEeeeecCCCceEEEEEeCCChhhhhcCCCceEEEEEEEEcCCcEEE
Confidence 599999999999998 2 689999999999999987644446778888888888888999999999999999999999
Q ss_pred EEEEEeCCCCcEEEeeeccceEEEeece-eEEecccCCeeecCCCCCCCCCCCccccceeecCCCcceEEeCCCCeEEE-
Q 027452 84 ELTITNTDNKPFSFSSALHTYFRASVTG-ASVKGLKGCKTLNKDPDPKNPMEGKEERDRVTFPGFVDCIYLDAPSVVHL- 161 (223)
Q Consensus 84 ~~~v~N~~~~~~p~~~g~HpyF~~~~~~-~~i~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~D~~y~~~~~~~~l- 161 (223)
+++++|+|+++|||++|+||||+++++. +.|.++.+..|+|+....... ...+.+.+.+++|++|.+.++.+.|
T Consensus 125 ~l~v~N~g~~~~p~~~g~HpYf~v~d~~~~~v~gl~~~~y~d~~~~~~~~----~~~~~~~~~~~~Drvy~~~~~~~~i~ 200 (269)
T cd09020 125 ELTVTNTGDKPFSFTAALHTYFRVSDIEQVRVEGLEGATYLDKLTDQREK----VQGGAVTFDGEVDRVYLNTPAPLTID 200 (269)
T ss_pred EEEEECCCCCCeEehhccCeeEecCCccccEEeCCCCCceEEcCCCcccc----ccCCceEECCccceEEeCCCCCEEEE
Confidence 9999999999999999999999999876 999999887888876542221 2235678888999999988777888
Q ss_pred eCCCCCeEEEEeCCCCcEEEeCCCCCC--------CCCCCceEEeccCcee-ceEECCCCeEEEEEEEE
Q 027452 162 DNGLGDTITIRNTNWSDAVLWNPHMQM--------EACYKDFVCVENAKIG-KVQLEPEQSWTAKQHLS 221 (223)
Q Consensus 162 ~~~~~~~l~i~~~~~~~~vvwtp~~~~--------~~~~~~~vCiEP~~~~-~~~L~pGe~~~~~~~i~ 221 (223)
|+..+++|+|..++++++|||||+.++ +++|++||||||++.. .+.|+|||+++++++|+
T Consensus 201 d~~~~~~i~i~~~~~~~~VVWNP~~~~~~~~~d~~~~~~~~fvCvEp~~~~~~~~L~pG~~~~~~~~i~ 269 (269)
T cd09020 201 DPAWGRRIRIEKSGSPSAVVWNPWIEKAARMADFPDDGYRRMVCVEAANVADPVTLAPGESHTLSQTIS 269 (269)
T ss_pred cCCCCcEEEEEecCCCCEEEeCcchhhccccccCCccccceEEEECeeecCCCEEECCCCCEEEEEEEC
Confidence 888899999999999999999998742 4568999999999875 49999999999999884
No 3
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438. Proteins similar to Synechocystis Slr1438 are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=1.3e-43 Score=293.44 Aligned_cols=199 Identities=25% Similarity=0.428 Sum_probs=160.9
Q ss_pred cccccccEEcCCCCC---C---------CCCCceeEeeCCcEEEeeecCCCccEEEEEEecCccccccCCcceEEEEEEE
Q 027452 8 WDSGGVPHCFPQFGP---G---------PMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVI 75 (223)
Q Consensus 8 ~~rgG~PvlfP~~g~---~---------~~~~HGf~r~~~w~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~ 75 (223)
++|||+|+||||+|| + .+++|||+|+++|++++.+ +..+++|++.++++++++|||+|+++++|+
T Consensus 49 ~~~gG~p~l~P~~gri~~g~~~~~g~~~~lp~HGf~r~~~W~v~~~~---~~~~v~l~l~~~~~~~~~~P~~~~~~~~y~ 125 (271)
T cd09025 49 SVRGGIPILFPICGNLPDDGYPLAGQEYTLKQHGFARDLPWEVELLG---DGAGLTLTLRDNEATRAVYPFDFELELTYR 125 (271)
T ss_pred ccCCCCcEEECccCCCCCCeEEECCEEEeccCcccccCCCEEEEecC---CCcEEEEEEeCCHHHHhhCCceEEEEEEEE
Confidence 589999999999998 1 5799999999999998653 256899999888777789999999999999
Q ss_pred EeCCcEEEEEEEEeCCCCcEEEeeeccceEEEeece-eEEecccCCeeecCCCCCCCCCCCccccceeecCCCcceEEeC
Q 027452 76 LNTKSISTELTITNTDNKPFSFSSALHTYFRASVTG-ASVKGLKGCKTLNKDPDPKNPMEGKEERDRVTFPGFVDCIYLD 154 (223)
Q Consensus 76 L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~~~~-~~i~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~D~~y~~ 154 (223)
|.+++|+++++++|+|+++|||++|+||||++++.. +.+.+.. ..+.|.......+. ..+......++|++|..
T Consensus 126 L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF~~~~~~~~~l~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~D~~y~~ 200 (271)
T cd09025 126 LAGNTLEIAQRVHNLGDQPMPFSFGFHPYFAVPDKAKLSLDLPP-TRCFDQKTDEEANT----PGQFDETEEGVDLLFRP 200 (271)
T ss_pred EeCCEEEEEEEEEECCCCcEEEEEecCceeeCCchhccEEEcCH-HHHhhhccCCccCC----cccccccccccchhhcc
Confidence 999999999999999999999999999999998755 6665542 34455443221111 11223345689999988
Q ss_pred CCCeEEE-eCCCCCeEEEEeC-CCCcEEEeCCCCCCCCCCCceEEeccCc-----e----eceEECCCCeEEEEEEEE
Q 027452 155 APSVVHL-DNGLGDTITIRNT-NWSDAVLWNPHMQMEACYKDFVCVENAK-----I----GKVQLEPEQSWTAKQHLS 221 (223)
Q Consensus 155 ~~~~~~l-~~~~~~~l~i~~~-~~~~~vvwtp~~~~~~~~~~~vCiEP~~-----~----~~~~L~pGe~~~~~~~i~ 221 (223)
++ .++| ++..+++|.|..+ +++++|||||.. ++|||||||+ + +.++|+|||+++++++|.
T Consensus 201 ~~-~~~l~~~~~~~~i~l~~~~~~~~~vvw~p~~------~~~vCvEp~t~~~nA~n~~~~~~~L~PGe~~~~~~~i~ 271 (271)
T cd09025 201 LG-PASLTDGARGLKITLDHDEPFSNLVVWTDKG------KDFVCLEPWTGPRNALNTGERLLLLPPGETEEASVRIQ 271 (271)
T ss_pred CC-ceEEEecCCCEEEEEecCCCcceEEEecCCC------CcEEEEecCCCCccccCcCCccEEECCCCEEEEEEEEC
Confidence 75 6888 8777899999987 589999999974 7899999985 2 238999999999999873
No 4
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-42 Score=277.45 Aligned_cols=200 Identities=31% Similarity=0.560 Sum_probs=166.7
Q ss_pred cccccccEEcCCCCC---CCCCCceeEeeCCcEEEeeecCCCccEEEEEEecCccccccCCcceEEEEEEEEeCCcEEEE
Q 027452 8 WDSGGVPHCFPQFGP---GPMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSISTE 84 (223)
Q Consensus 8 ~~rgG~PvlfP~~g~---~~~~~HGf~r~~~w~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L~i~ 84 (223)
.||||+||||||||+ +++|+|||||+++|++.++.+++++..++|.|..+++ |+.|++++++++ +++|+++
T Consensus 70 aIRGGIPICwPWFG~~~~~~~PaHG~AR~~~W~l~~~~~~~~~v~v~f~L~~~~~-----p~~~~lr~~~~~-g~~le~~ 143 (287)
T COG0676 70 AIRGGIPICWPWFGPLAQQGLPAHGFARNRPWKLLEHDEDEDGVRVTFGLDLEDE-----PHDFTLRLTFRF-GETLELE 143 (287)
T ss_pred cccCCCcEEEeccCccCCCCCCccchhhcCceeeeehhcccCceEEEEEeCCCcc-----ccceEEEEEeec-cceEEEE
Confidence 599999999999999 3589999999999999999877777788888877653 999999999999 5889999
Q ss_pred EEEEeCCCCcEEEeeeccceEEEeece-eEEecccCCeeecCCCCCCCCCCCccccceeecCCCcceEEeCCCCeEEE-e
Q 027452 85 LTITNTDNKPFSFSSALHTYFRASVTG-ASVKGLKGCKTLNKDPDPKNPMEGKEERDRVTFPGFVDCIYLDAPSVVHL-D 162 (223)
Q Consensus 85 ~~v~N~~~~~~p~~~g~HpyF~~~~~~-~~i~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~D~~y~~~~~~~~l-~ 162 (223)
++..|..+ |+.++||||+++|++ +.|.|+.+.. +++.......+ ...+...++++.|++|+.......| |
T Consensus 144 l~~~~~~s----~~~AlHtYF~VgDi~qv~V~GL~~~~-~~~~~~~~~~v---~~~g~~~~~~~~DriY~~~~~~~~I~D 215 (287)
T COG0676 144 LESYGEES----FQAALHTYFRVGDIEQVEVSGLGGVC-IDKVLNAEEEV---TQHGIVTFPGETDRIYLNPEPCSVIVD 215 (287)
T ss_pred EEecChhH----HHHhhcceEEecchhheEeccCCcee-hhhhhhceeec---cCCCceeeCCCccEEEEcCCCceEEec
Confidence 99988776 999999999999998 9999998754 45444322211 1234578899999999998777888 9
Q ss_pred CCCCCeEEEEeCCCCcEEEeCCCCCC--------CCCCCceEEeccCceec--eEECCCCeEEEEEEEEe
Q 027452 163 NGLGDTITIRNTNWSDAVLWNPHMQM--------EACYKDFVCVENAKIGK--VQLEPEQSWTAKQHLSI 222 (223)
Q Consensus 163 ~~~~~~l~i~~~~~~~~vvwtp~~~~--------~~~~~~~vCiEP~~~~~--~~L~pGe~~~~~~~i~v 222 (223)
+...|+|++...+.+.+|||||+.++ +++|+.||||||+..+. ..++|+ ..+..++|++
T Consensus 216 ~~~~R~I~l~~~~~~~~VvWNP~~~~s~~M~d~~d~gyq~mlCvEta~~~~~l~~~~~~-~~~l~~~i~~ 284 (287)
T COG0676 216 PALNRIITLEHQGHSSTVVWNPGHAKSSSMADMPDDGYQTMLCVETARVGPDLKVGEPG-PVRLALKISV 284 (287)
T ss_pred CcceEEEEEEecCCCCeEEECCCccccccccccccccceEEEEEeecccCcchhhcCCc-ceeeeeeeec
Confidence 98899999999999999999999754 45899999999998753 677777 6667777765
No 5
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX. Proteins similar to Lactococcus lactis lacX are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=7.3e-40 Score=273.24 Aligned_cols=204 Identities=23% Similarity=0.358 Sum_probs=154.5
Q ss_pred cccccEEcCCCCC---C---------CCCCceeEeeCCcEEEeeecCCCccEEEEEEecCccccccCCcceEEEEEEEEe
Q 027452 10 SGGVPHCFPQFGP---G---------PMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILN 77 (223)
Q Consensus 10 rgG~PvlfP~~g~---~---------~~~~HGf~r~~~w~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~ 77 (223)
.|++|+||||+|| + .+++|||+|++.|++.+.+ +++++|++.++++++.+|||+|+++++|+|+
T Consensus 41 ~~~~p~l~P~~gri~~g~~~~~g~~~~l~~HGf~r~~~w~v~~~~----~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~ 116 (288)
T cd09024 41 GRHAPILFPIVGRLKDDTYTIDGKTYPMPQHGFARDMEFEVVEQS----DDSVTFELTDNEETLKVYPFDFELRVTYTLE 116 (288)
T ss_pred CCCCCEEEeeccCCCCCeEEECCEEeeccCCCCcccCceEEEEcc----CCEEEEEEccCcchhhcCCeEEEEEEEEEEe
Confidence 5678999999999 2 5899999999999998876 6789999988877778999999999999999
Q ss_pred CCcEEEEEEEEeCCCCcEEEeeeccceEEEeec--------eeEEecccCCee--ecCCC-CCCCCCCCccccceeecCC
Q 027452 78 TKSISTELTITNTDNKPFSFSSALHTYFRASVT--------GASVKGLKGCKT--LNKDP-DPKNPMEGKEERDRVTFPG 146 (223)
Q Consensus 78 ~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~~~--------~~~i~~~~~~~~--~d~~~-~~~~~~~~~~~~~~~~~~~ 146 (223)
+++|+++++++|.++++|||++|+||||++++. .++++....... .|... .+.+..+.......+.+..
T Consensus 117 ~~~L~i~~~v~N~~~~~~p~~~g~HpYF~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 196 (288)
T cd09024 117 GNTLKVTYEVKNPDDKTMPFSIGGHPAFNCPLDEGEKFEDYYLEFEPKEELERIPLVGPLGLLGEKKPLLLNEGTLPLTH 196 (288)
T ss_pred CCEEEEEEEEEcCCCCceEEEEeCCceEECCCCCCCcccceEEEECCcccceEEecCCccccccccccccCCCCeecCCH
Confidence 999999999999999999999999999999742 266665211111 23222 2222111011123344443
Q ss_pred --CcceE--EeCCC-CeEEE-eCCCCCeEEEEeCCCCcEEEeCCCCCCCCCCCceEEeccCce---------------ec
Q 027452 147 --FVDCI--YLDAP-SVVHL-DNGLGDTITIRNTNWSDAVLWNPHMQMEACYKDFVCVENAKI---------------GK 205 (223)
Q Consensus 147 --~~D~~--y~~~~-~~~~l-~~~~~~~l~i~~~~~~~~vvwtp~~~~~~~~~~~vCiEP~~~---------------~~ 205 (223)
..|++ |..++ +.+.| ++..++.|+|..+++++++||+|.. .++|||||||+. +.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~~~~~~l~vwt~~~-----~~~~iciEP~t~~~da~~~~~~~~~~~gl 271 (288)
T cd09024 197 DLFDDDALIFDNLKSREVTLKSKKTGHGVTVDFDDFPYLGIWSKPN-----GAPFVCIEPWYGLADSVGFDGDLEDKEGI 271 (288)
T ss_pred HHhcCCEEEEcCCCccEEEEEcCCCCCEEEEEeCCCCEEEEeCCCC-----CCCEEEEcCCCCCCCcCCCCccccccCCC
Confidence 22343 33433 67888 7777889999998899999999872 178999999971 23
Q ss_pred eEECCCCeEEEEEEEEe
Q 027452 206 VQLEPEQSWTAKQHLSI 222 (223)
Q Consensus 206 ~~L~pGe~~~~~~~i~v 222 (223)
++|+|||+++.+++|++
T Consensus 272 ~~L~PGe~~~~~~~i~~ 288 (288)
T cd09024 272 NKLEPGESFEASYSITI 288 (288)
T ss_pred EEeCCCCEEEEEEEEEC
Confidence 89999999999999975
No 6
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB. Proteins similar to Escherichia coli YphB are uncharacterized members of the aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=5.1e-40 Score=272.34 Aligned_cols=200 Identities=18% Similarity=0.252 Sum_probs=155.8
Q ss_pred cccccccEEcCCCCC---C------------------CCCCceeEeeCCcEEEeeecCCCccEEEEEEecCccccccCCc
Q 027452 8 WDSGGVPHCFPQFGP---G------------------PMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDF 66 (223)
Q Consensus 8 ~~rgG~PvlfP~~g~---~------------------~~~~HGf~r~~~w~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~ 66 (223)
|.|+|+|+|||+.|| + ++++|||||++.|+|++.+ +++++|++...+++ +||
T Consensus 35 ~~~~~~p~LfP~~gRi~~~~~~~~g~~y~l~~n~~~~~~~~HG~ar~~~w~v~~~~----~~~v~l~l~~~~~~---~P~ 107 (273)
T cd09021 35 ALAMACFPLVPFSNRIRGGRFLFAGREVALPPNTADEPHPLHGDGWRRPWQVVAAS----ADSAELQLDHEADD---PPW 107 (273)
T ss_pred cccccCceEeccCCcccCCcEeECCEEEecCCCCCCCccCcccchhcCceEEEecc----CCeEEEEEecCCCC---CCE
Confidence 789999999999998 1 2489999999999998776 56889988876554 399
Q ss_pred ceEEEEEEEEeCCcEEEEEEEEeCCCCcEEEeeeccceEEEeece-eEEecccCCeeecCCCCCCCCCCCcc---cccee
Q 027452 67 SFQALFKVILNTKSISTELTITNTDNKPFSFSSALHTYFRASVTG-ASVKGLKGCKTLNKDPDPKNPMEGKE---ERDRV 142 (223)
Q Consensus 67 ~f~l~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~~~~-~~i~~~~~~~~~d~~~~~~~~~~~~~---~~~~~ 142 (223)
+|+++++|+|.+++|+++++++|.++++|||++|+||||++++.. +++++.... .+|....+++...... .....
T Consensus 108 ~~~~~~~y~L~~~~L~i~~~~~N~~~~~~~~~~g~H~YF~~~~~~~l~v~~~~~~-~~d~~~lp~~~~~~~~~~df~~~~ 186 (273)
T cd09021 108 AYRAEQRFHLAGDGLSITLSVTNRGDRPMPAGLGFHPYFPRTPDTRLQADADGVW-LEDEDHLPTGLRPHPPDWDFSQPR 186 (273)
T ss_pred eEEEEEEEEEcCCCEEEEEEEEECCCCCceeeeecCccEecCCCCEEEEecceEE-ecCCCcCCCcccCCCcchhhcCCC
Confidence 999999999999999999999999999999999999999998644 888875321 1232222333211000 01112
Q ss_pred ec-CCCcceEEeCCCCeEEE-eCCCCCeEEEEeCC-CCcEEEeCCCCCCCCCCCceEEeccCce-----------eceEE
Q 027452 143 TF-PGFVDCIYLDAPSVVHL-DNGLGDTITIRNTN-WSDAVLWNPHMQMEACYKDFVCVENAKI-----------GKVQL 208 (223)
Q Consensus 143 ~~-~~~~D~~y~~~~~~~~l-~~~~~~~l~i~~~~-~~~~vvwtp~~~~~~~~~~~vCiEP~~~-----------~~~~L 208 (223)
.+ ...+|++|......+.+ ++.++++|+|.+++ +|++|||||+. ++|||||||+. +.++|
T Consensus 187 ~l~~~~~D~~f~~~~~~~~l~~~~~~~~i~v~~~~~~~~~vvwtp~~------~~~vCvEP~~~~~da~~~~~~~~~~~L 260 (273)
T cd09021 187 PLPDRWIDNCFTGWDGAALIWPPERGLALTIEADAPFSHLVVYRPPG------EDFFCLEPVSHAPDAHHGPGDPGLRVL 260 (273)
T ss_pred cCCcccccccccCCCcceEEecCCCCcEEEEecCCCCCEEEEEcCCC------CCeEEEccccCCCCccCCcCCCCcEEe
Confidence 22 24799999876566778 88788999999997 99999999973 78999999961 12899
Q ss_pred CCCCeEEEEEEEE
Q 027452 209 EPEQSWTAKQHLS 221 (223)
Q Consensus 209 ~pGe~~~~~~~i~ 221 (223)
+|||+++.+++|+
T Consensus 261 ~pge~~~~~~~i~ 273 (273)
T cd09021 261 APGESLSLSMRIT 273 (273)
T ss_pred CCCCcEEEEEEEC
Confidence 9999999999874
No 7
>PRK15172 putative aldose-1-epimerase; Provisional
Probab=100.00 E-value=3.9e-35 Score=245.74 Aligned_cols=200 Identities=14% Similarity=0.171 Sum_probs=153.7
Q ss_pred cccEEcCCCCC---C------------------CCCCceeEeeCCcEEEeeecCCCccEEEEEEecCccccccCCcceEE
Q 027452 12 GVPHCFPQFGP---G------------------PMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQA 70 (223)
Q Consensus 12 G~PvlfP~~g~---~------------------~~~~HGf~r~~~w~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l 70 (223)
+.++|||+.|| | ++++||+++.+.|+|.+.. +++++|++.+.+ . .+|||+|++
T Consensus 55 ~g~~L~P~anRI~~g~f~~~G~~y~L~~N~~~~~~~lHG~~~~~~W~v~~~~----~~~v~l~~~~~~-~-~gyP~~~~~ 128 (300)
T PRK15172 55 LGKVLIPWPNRIANGCYRYQGQEYQLPINEHVSKAAIHGLLAWRDWQISELT----ATSVTLTAFLPP-S-YGYPFMLAS 128 (300)
T ss_pred cccEecccCCeecCCEEEECCEEEECCCCCCCCCcccCCCccCceEEEEEec----CCEEEEEEEcCC-C-CCCCEEEEE
Confidence 44799999998 1 2459999999999998766 568999987754 3 679999999
Q ss_pred EEEEEEe-CCcEEEEEEEEeCCCCcEEEeeeccceEEEee--c---eeEEecccCCeeecCCCCCCCCC--CCc--cccc
Q 027452 71 LFKVILN-TKSISTELTITNTDNKPFSFSSALHTYFRASV--T---GASVKGLKGCKTLNKDPDPKNPM--EGK--EERD 140 (223)
Q Consensus 71 ~~~y~L~-~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~~--~---~~~i~~~~~~~~~d~~~~~~~~~--~~~--~~~~ 140 (223)
+++|+|+ +++|+|+++++|.++++|||++|+||||+++. + .+++++..... .|....|++.. .+. +...
T Consensus 129 ~v~y~L~~~~~L~i~~~~~n~~~~~~P~~~g~HpYFnl~~~~~~~~~L~~~a~~~~~-~d~~~iPtg~~~~~~~~~df~~ 207 (300)
T PRK15172 129 QVIYSLDAATGLSVEIASQNIGDVPAPYGVGIHPYLTCNLTSVDEYLLQLPANQVLA-VDEHANPTTLHHVDELDLDFSQ 207 (300)
T ss_pred EEEEEEccCCeEEEEEEEEECCCCceeeEEecCceEecCCCChhceEEEEeCCeEEe-cCCCcCCCccccCCCCCcCCCC
Confidence 9999998 47999999999999999999999999999863 2 27777643222 45555566522 111 0111
Q ss_pred eeecC-CCcceEEeCCCC--eEEE-eCCCCCeEEEEeCCCCcEEEeCCCCCCCCCCCceEEeccCce---------eceE
Q 027452 141 RVTFP-GFVDCIYLDAPS--VVHL-DNGLGDTITIRNTNWSDAVLWNPHMQMEACYKDFVCVENAKI---------GKVQ 207 (223)
Q Consensus 141 ~~~~~-~~~D~~y~~~~~--~~~l-~~~~~~~l~i~~~~~~~~vvwtp~~~~~~~~~~~vCiEP~~~---------~~~~ 207 (223)
...+. .++|++|..+.+ .++| ++.++++|++.++ .+++||||+... .+++||||||+. +.++
T Consensus 208 ~~~l~~~~~D~~f~~~~~~~~~~l~~~~~g~~l~~~~~-~~~~~vyt~~~~----~~~~~ciEp~t~p~dA~n~~~g~~~ 282 (300)
T PRK15172 208 AKKIAATKIDHTFKTANDLWEVRITHPQQALSVSLCSD-QPWLQIYSGEKL----QRQGLAVEPMSCPPNAFNSGIDLLL 282 (300)
T ss_pred CeECCCCCccCEEEcCCCceEEEEEeCCCCeEEEEEcC-CCEEEEECCCCC----CCCEEEEeCCCCCCCCCCCCCCCEE
Confidence 12232 379999988754 6888 8888999999985 799999998631 168999999983 2389
Q ss_pred ECCCCeEEEEEEEEeC
Q 027452 208 LEPEQSWTAKQHLSIN 223 (223)
Q Consensus 208 L~pGe~~~~~~~i~v~ 223 (223)
|+|||+++.+++|+.+
T Consensus 283 L~pge~~~~~~~i~~~ 298 (300)
T PRK15172 283 LEPGKTHRLFFNIGGQ 298 (300)
T ss_pred ECCCCEEEEEEEEEEE
Confidence 9999999999999753
No 8
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR. Proteins similar to Escherichia coli YihR are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=3.6e-35 Score=244.60 Aligned_cols=200 Identities=16% Similarity=0.226 Sum_probs=147.9
Q ss_pred ccEEcCCCCC---C------------------CCCCceeEeeCCcEEEeeecCCCccEEEEEEecCccccccCCcceEEE
Q 027452 13 VPHCFPQFGP---G------------------PMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQAL 71 (223)
Q Consensus 13 ~PvlfP~~g~---~------------------~~~~HGf~r~~~w~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~ 71 (223)
.|+|||+.|| | ++++||++|.+.|++++.+ +++++|++.+.. .++|||+|+++
T Consensus 37 g~~l~p~~nRi~~g~~~~~G~~y~l~~N~~~~~~~~HG~~~~~~w~v~~~~----~~~v~l~l~~~~--~~~yP~~~~~~ 110 (284)
T cd09022 37 GQVLAPWPNRIADGRYTFDGVEHQLPITEPERGNAIHGLVRWADWQLVEHT----DSSVTLRTRIPP--QPGYPFTLELT 110 (284)
T ss_pred ccEEeeeCCcccCCEEEECCEEEEccCcCCCCCCCCcCCeecceEEEeecc----CCeEEEEEEeCC--ccCCCceEEEE
Confidence 3799999998 1 2349999999999998765 567899988752 46899999999
Q ss_pred EEEEEeCCcEEEEEEEEeCCCCcEEEeeeccceEEEeec--e---eEEecccCCeeecCCCCCCCCCCC--c--ccccee
Q 027452 72 FKVILNTKSISTELTITNTDNKPFSFSSALHTYFRASVT--G---ASVKGLKGCKTLNKDPDPKNPMEG--K--EERDRV 142 (223)
Q Consensus 72 ~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~~~--~---~~i~~~~~~~~~d~~~~~~~~~~~--~--~~~~~~ 142 (223)
++|+|++++|+|+++++|.++++|||++|+||||++++. . +++++..... .|....|++..+. . ......
T Consensus 111 ~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~l~~~~~~~~~L~~~a~~~~~-~d~~~lptg~~~~~~~~~df~~~~ 189 (284)
T cd09022 111 VTYELDDDGLTVTLTATNVGDEPAPFGVGFHPYLSAGGAPLDECTLTLPADTWLP-VDERLLPTGTEPVAGTPYDFRTGR 189 (284)
T ss_pred EEEEEcCCcEEEEEEEEeCCCCCeEeeeEecceEecCCCCcccEEEEEECceEEe-cCCccCCCcCcCCCCCCccCcCCc
Confidence 999999999999999999999999999999999999753 2 7776543222 3444445442211 0 001111
Q ss_pred ecC-CCcceEEeCCC------CeEEE-eCCCCCeEEEEeC-CCCcEEEeCCCCCCCCCCCceEEeccCce---------e
Q 027452 143 TFP-GFVDCIYLDAP------SVVHL-DNGLGDTITIRNT-NWSDAVLWNPHMQMEACYKDFVCVENAKI---------G 204 (223)
Q Consensus 143 ~~~-~~~D~~y~~~~------~~~~l-~~~~~~~l~i~~~-~~~~~vvwtp~~~~~~~~~~~vCiEP~~~---------~ 204 (223)
.+. .++|++|.... ..++| ++.+ ++|+|.++ ++|+++||++........+++||||||+. +
T Consensus 190 ~l~~~~~D~~f~~~~~~~~~~~~~~l~~~~~-~~l~l~~~~~~~~~~vyt~~~~~~~~~~~~iclEP~~~~~da~n~~~~ 268 (284)
T cd09022 190 RLGGTALDTAFTDLTRDADGRARARLTGPDG-RGVELWADESFPWVQVFTADTLPPPGRRRGLAVEPMTCPPNAFNSGTD 268 (284)
T ss_pred cccCccccccccccccCCCCcEEEEEECCCC-CEEEEEECCCCCEEEEECCCCCCCCCCCCEEEEccCCCCCCcCcCCCC
Confidence 222 27899987542 26788 7765 89999996 78999999986311111268999999973 2
Q ss_pred ceEECCCCeEEEEEEE
Q 027452 205 KVQLEPEQSWTAKQHL 220 (223)
Q Consensus 205 ~~~L~pGe~~~~~~~i 220 (223)
.++|+|||+++.+++|
T Consensus 269 ~~~L~pge~~~~~~~i 284 (284)
T cd09022 269 LIVLAPGETHTASWGI 284 (284)
T ss_pred cEEECCCCEEEEEEeC
Confidence 3899999999988875
No 9
>cd01081 Aldose_epim aldose 1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism; they catalyze the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=4.2e-35 Score=243.52 Aligned_cols=202 Identities=19% Similarity=0.256 Sum_probs=151.6
Q ss_pred cccccccEEcCCCCC--C-----------------CCCCceeEeeCCcEEEeeecCCCccEEEEEEecCccccccCCcce
Q 027452 8 WDSGGVPHCFPQFGP--G-----------------PMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSF 68 (223)
Q Consensus 8 ~~rgG~PvlfP~~g~--~-----------------~~~~HGf~r~~~w~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f 68 (223)
..++|.|+|||++|| + ++++|||+|+++|+++..+. ++++|+|+++..+++. +|||+|
T Consensus 37 ~~~~~~~~l~P~~gri~~g~~~~~g~~~~~~~~~~~~~lHG~~~~~~w~v~~~~~--~~~~v~l~~~~~~~~~-~~P~~~ 113 (284)
T cd01081 37 PTGGGGAILFPFANRISDGRYTFDGKQYPLNEDEGGNAIHGFVRNLPWRVVATDE--EEASVTLSYDLNDGPG-GYPFPL 113 (284)
T ss_pred CCCCcceEecCcCCcccCCEEeECCEEecCCCCCCCccccCCeecCcEEEEEecc--CCcEEEEEEEeCCCCC-CCCEEE
Confidence 368899999999998 1 57999999999999987642 2568999998877665 899999
Q ss_pred EEEEEEEEeCCcEEEEEEEEeCCCCcEEEeeeccceEEEeec--e---eEEecccCCeeecCCCCCCCCCCCc---cccc
Q 027452 69 QALFKVILNTKSISTELTITNTDNKPFSFSSALHTYFRASVT--G---ASVKGLKGCKTLNKDPDPKNPMEGK---EERD 140 (223)
Q Consensus 69 ~l~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~~~--~---~~i~~~~~~~~~d~~~~~~~~~~~~---~~~~ 140 (223)
+++++|+|.+++|+|+++|+|+++++|||++|+||||++++. . +.+.+. .....|....+++..... ....
T Consensus 114 ~l~~ty~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (284)
T cd01081 114 ELTVTYTLDADTLTITFTVTNLGDEPMPFGLGWHPYFGLPGVAIEDLRLRVPAS-KVLPLDDLLPPTGELEVPGEEDFRL 192 (284)
T ss_pred EEEEEEEEeCCeEEEEEEEEeCCCCCcceeeecCceEecCCCcccceEEEecCC-EEEecCCccCCCCccCCcccccccC
Confidence 999999999999999999999999999999999999999864 2 555541 111123333333321100 0111
Q ss_pred eeec-CCCcceEEeCCC-----CeEEE-eCCCCCeEEEEeCCCCcEEEeCCCCCCCCCCCceEEeccCce----------
Q 027452 141 RVTF-PGFVDCIYLDAP-----SVVHL-DNGLGDTITIRNTNWSDAVLWNPHMQMEACYKDFVCVENAKI---------- 203 (223)
Q Consensus 141 ~~~~-~~~~D~~y~~~~-----~~~~l-~~~~~~~l~i~~~~~~~~vvwtp~~~~~~~~~~~vCiEP~~~---------- 203 (223)
...+ ...+|++|.... ..++| ++.+++.|++.++. |++|||+|+. ..++|||||||+.
T Consensus 193 ~~~~~~~~~D~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~~v~t~~~----~~~~~~ciEP~t~~~da~~~~~~ 267 (284)
T cd01081 193 GRPLGGGELDDCFLLLGNDAGTAEARLEDPDSRISVEFETGW-PFWQVYTGDG----GRRGSVAIEPMTSAPDAFFNNNG 267 (284)
T ss_pred CcCcCCcccccccccCcCCCCeeEEEEECCCCeEEEEEeCCC-CEEEEECCCC----CcCCEEEEccccCCCCCCCCCCC
Confidence 2223 347898887543 26788 88778888888875 9999999873 1268999999973
Q ss_pred eceEEC-CCCeEEEEE
Q 027452 204 GKVQLE-PEQSWTAKQ 218 (223)
Q Consensus 204 ~~~~L~-pGe~~~~~~ 218 (223)
+.++|+ |||+.+.++
T Consensus 268 ~~~~L~~pge~~~~~~ 283 (284)
T cd01081 268 GLITLKPPGETRTFSI 283 (284)
T ss_pred ceEEeCCCCceEEEEe
Confidence 238999 999988765
No 10
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5.1.3.3 from EC) (mutarotase) is the enzyme responsible for the anomeric interconversion of D-glucose and other aldoses between their alpha- and beta-forms. The sequence of mutarotase from two bacteria, Acinetobacter calcoaceticus and Streptococcus thermophilus is available []. It has also been shown that, on the basis of extensive sequence similarities, a mutarotase domain seems to be present in the C-terminal half of the fungal GAL10 protein which encodes, in the N-terminal part, UDP-glucose 4-epimerase.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process; PDB: 1YGA_A 3DCD_A 2CIQ_A 2CIS_A 2CIR_A 2HTB_C 2HTA_B 3Q1N_A 1NSZ_B 1NSR_B ....
Probab=100.00 E-value=2.4e-33 Score=235.02 Aligned_cols=205 Identities=21% Similarity=0.388 Sum_probs=140.8
Q ss_pred cccEEcCCCCCCCCCCceeEeeCCcEEEeeecCCCccEEEEEEecCccccccCCcceEEEEEEEEeCCc-EEEEEEEEeC
Q 027452 12 GVPHCFPQFGPGPMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKS-ISTELTITNT 90 (223)
Q Consensus 12 G~PvlfP~~g~~~~~~HGf~r~~~w~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~-L~i~~~v~N~ 90 (223)
|.+++||+++..++++|||+|++.|+|++.++ +++++|++..+.++..+|||+|+++++|+|++++ |+|+++|+|.
T Consensus 70 g~~~~l~~~~~~~~~~HG~~~~~~w~v~~~~~---~~~~~~~~~~~~~~~~~yP~~~~l~~~y~L~~~~~L~i~~~v~n~ 146 (300)
T PF01263_consen 70 GKPYCLPWNGPYPNPIHGFARNKPWEVEEQSE---DDSVSFTLVSDPDGEEGYPFDFRLRITYTLDENGKLTITYEVTND 146 (300)
T ss_dssp TEEEEBSSSBTTTBEETBSGGGSB-EEEEEEE---TTEEEEEEEEEETTHHHSSSEEEEEEEEEEETTEEEEEEEEEEES
T ss_pred CEEEEeeeccCCCcCCCCCcccccEEEEEecc---cceEEEEEEecCccceeeccceeeEEEEEECCCCeEEEEEEEEec
Confidence 55556665554478999999999999999872 2677777777333336799999999999999999 9999999999
Q ss_pred CCCcEEEeeeccceEEEe----ece-eEEecccCCeeecCCCCCCCC---CCCcc----ccceeecCC-CcceEEeCCC-
Q 027452 91 DNKPFSFSSALHTYFRAS----VTG-ASVKGLKGCKTLNKDPDPKNP---MEGKE----ERDRVTFPG-FVDCIYLDAP- 156 (223)
Q Consensus 91 ~~~~~p~~~g~HpyF~~~----~~~-~~i~~~~~~~~~d~~~~~~~~---~~~~~----~~~~~~~~~-~~D~~y~~~~- 156 (223)
+ ++|||++|+||||+++ +.. +++++..... .++...|++. +.... ....+.... .+|++|....
T Consensus 147 ~-~~~p~~~g~HpyF~l~~~~~~~~~~~~~~~~~~~-~~~~~lptg~~~~~~~~~~d~~~~~~i~~~~~~~D~~f~~~~~ 224 (300)
T PF01263_consen 147 G-KPMPFNLGFHPYFNLPGEDIDDHQLQVPADEYLE-LDERLLPTGELAPVKGTPFDFRQGRPIGDDIPGLDHCFVLDPP 224 (300)
T ss_dssp S-SEEEEBEEEEEEEETTCTSGTTGEEEEEEEEEEE-EETTSSEEEEEEETTTCETCGSSSEEECSSCTCEEEEEEESSS
T ss_pred C-ccEEeeccccceEEcCCcceeeeEEEeccceeee-cccccCCceeeecccCCccccccCeeecccccccceEEEcCCC
Confidence 9 9999999999999999 222 7777644333 4444444432 11111 111222222 6899998865
Q ss_pred CeEEE-eCCCCCeEEEEeC-CCCcEEEeCCCCCCCCCCCceEEeccCc-------ee--ceEECCCCeEEEEEEEE
Q 027452 157 SVVHL-DNGLGDTITIRNT-NWSDAVLWNPHMQMEACYKDFVCVENAK-------IG--KVQLEPEQSWTAKQHLS 221 (223)
Q Consensus 157 ~~~~l-~~~~~~~l~i~~~-~~~~~vvwtp~~~~~~~~~~~vCiEP~~-------~~--~~~L~pGe~~~~~~~i~ 221 (223)
....+ ....++++.|... ++|++|||||+.+........+|+||+. .+ .++|+|||+++.+++|+
T Consensus 225 ~~~~~~~~~~~~~i~l~~~~~~p~~~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGe~~~~~~~~~ 300 (300)
T PF01263_consen 225 GRPVIRLRSPGSGISLEFSTSFPWLVVWTPGFDPKYICIEPIAIEPDFVPDEANNPGKGLIVLAPGESYSFSTRYT 300 (300)
T ss_dssp SEEEEEEETTTEEEEEEEEESSSEEEEEEETTSSTEETTCEEECEEESECECCCECCHEGEEEETTSEEEEEEEEE
T ss_pred ccEEEEeecccceEEEEecCCCCcEEEECCCCcccccCCcccccCCCeeecccccCCCCCEEECCCCEEEEEEEEC
Confidence 44444 4445666666654 6899999999763100001234444443 22 49999999999999985
No 11
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.1e-32 Score=226.87 Aligned_cols=208 Identities=21% Similarity=0.321 Sum_probs=147.3
Q ss_pred cccc-cccEEcCCCCC---C----------------CCCCceeEeeCCcEEEeeecCCCccEEEEEEecCccccccCCcc
Q 027452 8 WDSG-GVPHCFPQFGP---G----------------PMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFS 67 (223)
Q Consensus 8 ~~rg-G~PvlfP~~g~---~----------------~~~~HGf~r~~~w~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~ 67 (223)
|.++ +.++|+|+.|| | ++++||+++..+|+|.+.+..++ ..++|.+.+.+ .+|||+
T Consensus 56 ~~~~~~ga~l~p~anRI~~g~f~~~G~~y~L~~N~~~~~lHG~~~~~~~~v~~~~~~~~-~~~~l~~~~~~---~gyP~~ 131 (308)
T COG2017 56 ATRGYGGAILGPYANRISNGRFTLDGKTYQLPPNEGGNALHGGARDFDWQVWEAEEDDN-AEFSLVLRDGE---DGYPGN 131 (308)
T ss_pred cccccccceecCccCcccCCEEEECCEEEEeCCCCCCccccCCccCCCeeEEEEEeccC-CEEEEEecccC---CCCCce
Confidence 5677 88999999998 1 35699999999999998873322 25555555444 459999
Q ss_pred eEEEEEEEEeCCcEEEEEEEEeCCCCcEEEeeeccceEEEeec-----eeEEecccCCeeecCCCCCCCCCC--Cccccc
Q 027452 68 FQALFKVILNTKSISTELTITNTDNKPFSFSSALHTYFRASVT-----GASVKGLKGCKTLNKDPDPKNPME--GKEERD 140 (223)
Q Consensus 68 f~l~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~~~-----~~~i~~~~~~~~~d~~~~~~~~~~--~~~~~~ 140 (223)
|+++++|+|++++|+|+++++|.++++|||++|+||||++++. .+...........+..+.|++.++ ......
T Consensus 132 l~~~vtY~L~~~~L~v~~~~~n~~~~~~p~~~g~HpYFnl~~~~~~~~~~~~~~~~~l~~~~~~~ip~~~~~~~~~~~~~ 211 (308)
T COG2017 132 LEATVTYTLNEDGLTVTYEVTNDGDEPTPFNLGNHPYFNLPGDGRLEHILAIASDYYLPVDDEEPIPTGDIKREPKPLED 211 (308)
T ss_pred EEEEEEEEEcCCCEEEEEEEEeCCCCcceecccccceEecCCCCCcccEEEecCCceEEcccCCCCCccccccccccccc
Confidence 9999999999888999999999999999999999999999853 122222111121222555554321 000011
Q ss_pred eeecCCCcceEEeCC-----CCeEEE-eCCCCCeEEEEeCCCCcEEEeCCCCCCCCCCCceEEeccCc-e-------e--
Q 027452 141 RVTFPGFVDCIYLDA-----PSVVHL-DNGLGDTITIRNTNWSDAVLWNPHMQMEACYKDFVCVENAK-I-------G-- 204 (223)
Q Consensus 141 ~~~~~~~~D~~y~~~-----~~~~~l-~~~~~~~l~i~~~~~~~~vvwtp~~~~~~~~~~~vCiEP~~-~-------~-- 204 (223)
.+.....+|+.|... ...+.| ++.++++|+|.++ .|.++||+.... ..++++|||||+ . +
T Consensus 212 ~~~~~~~~d~~f~~~~~~~~~~~a~l~~~~~~~~l~v~t~-~p~~~~yt~~~~---~~~~~~clEp~~~~pdA~n~~~~~ 287 (308)
T COG2017 212 DFAADDPYDHAFLLNGARGLKPAARLYDPDSGLSLEVETD-EPFVQLYTGNFL---AGRDGLCLEPQSGLPDAFNHPGFG 287 (308)
T ss_pred ccccccccccceeeccccCCcceEEEEcCCCCeEEEEEeC-CCeEEEEeCCCC---CcCCeEEeeeccCCCCcCCCCCcc
Confidence 111111258777543 247888 8989999999996 777777775321 026899999998 2 1
Q ss_pred ceEECCCCeEEEEEEEEeC
Q 027452 205 KVQLEPEQSWTAKQHLSIN 223 (223)
Q Consensus 205 ~~~L~pGe~~~~~~~i~v~ 223 (223)
...|+|||+++..++|+++
T Consensus 288 ~~~L~pGe~~~~~~~~~~~ 306 (308)
T COG2017 288 LIVLEPGETYSAETRFRFE 306 (308)
T ss_pred cceeCCCCEEEEEEEEEEe
Confidence 3779999999999999873
No 12
>cd09019 galactose_mutarotase_like galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.
Probab=99.97 E-value=2.8e-30 Score=218.94 Aligned_cols=185 Identities=14% Similarity=0.229 Sum_probs=135.8
Q ss_pred ceeEeeCCcEEEeeecCCCccEEEEEEecCccccccCCcceEEEEEEEEeC-CcEEEEEEEEeCCCCcEEEeeeccceEE
Q 027452 28 HGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNT-KSISTELTITNTDNKPFSFSSALHTYFR 106 (223)
Q Consensus 28 HGf~r~~~w~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~-~~L~i~~~v~N~~~~~~p~~~g~HpyF~ 106 (223)
|||++ +.|++...+ +++|+|++.+.+. ..+|||+|+++++|+|++ ++|+|+++++| +++|||++|+||||+
T Consensus 92 ~G~~~-~~w~~~~~~----~~~v~l~~~~~~~-~~gyP~~~~~~v~y~L~~~~~L~i~~~~~~--~~~~p~~~g~HpyFn 163 (326)
T cd09019 92 KGFDK-RVWDVEEVE----ENSVTFSLVSPDG-EEGFPGNLTVTVTYTLTDDNELTIEYEATT--DKPTPVNLTNHSYFN 163 (326)
T ss_pred ccccC-cEEeEEecc----CCEEEEEEECCcc-cCCCCeEEEEEEEEEECCCCEEEEEEEEEe--CCCeEecccceeeEe
Confidence 55566 499998876 7789999988744 589999999999999997 89999999997 599999999999999
Q ss_pred Eee-----ce---eEEecccCCeeecCCCCCCCCC---CCc--cccc--ee---------ec-CCCcceEEeC--C----
Q 027452 107 ASV-----TG---ASVKGLKGCKTLNKDPDPKNPM---EGK--EERD--RV---------TF-PGFVDCIYLD--A---- 155 (223)
Q Consensus 107 ~~~-----~~---~~i~~~~~~~~~d~~~~~~~~~---~~~--~~~~--~~---------~~-~~~~D~~y~~--~---- 155 (223)
+++ +. +++++..... +|....|++.+ ... +... .+ .. ..++|++|.. +
T Consensus 164 l~~~~~~~~~~~~L~~~a~~~~~-~d~~~iPtG~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~~~~D~~f~l~~~~~~~ 242 (326)
T cd09019 164 LAGEGSGDILDHELQINADRYLP-VDEELIPTGEILPVAGTPFDFRKPKPIGRIDLDDEQLKLGGGYDHNFVLDKGGGKL 242 (326)
T ss_pred cCCCCCCCccceEEEEecCcEEe-eCCCCCcCCCceecCCCCccccCccCccccccchhhcccCCCcceEEEECCCCCcc
Confidence 983 22 7777643222 45555566521 111 0000 00 11 2479999973 2
Q ss_pred CCeEEE-eCCCCCeEEEEeCCCCcEEEeCCCCCCC--------CCCCceEEeccCce---------eceEECCCCeEEEE
Q 027452 156 PSVVHL-DNGLGDTITIRNTNWSDAVLWNPHMQME--------ACYKDFVCVENAKI---------GKVQLEPEQSWTAK 217 (223)
Q Consensus 156 ~~~~~l-~~~~~~~l~i~~~~~~~~vvwtp~~~~~--------~~~~~~vCiEP~~~---------~~~~L~pGe~~~~~ 217 (223)
...++| ++.++++|++.++ .|++||||+..... ...+.+||||||+. +.++|+|||+++..
T Consensus 243 ~~~a~l~~~~sg~~l~v~t~-~p~~~vyT~~~~~~~~~~~~~~~~~~~~iclEpq~~pdA~n~~~~g~~~L~pge~~~~~ 321 (326)
T cd09019 243 RPAARLTSPESGRKLEVYTT-QPGVQFYTGNFLDGTPGGGGKVYGKRSGFCLETQHFPDAPNHPNFPSIILRPGETYRHT 321 (326)
T ss_pred ceeEEEEcCCCCcEEEEecC-CCEEEEEeCCCCCcccCCCCcEeCCCCEEEEeccCCCCcccccCCCCeEECCCCEEEEE
Confidence 135788 8888999999885 89999999863210 12367899999973 23899999999999
Q ss_pred EEEEe
Q 027452 218 QHLSI 222 (223)
Q Consensus 218 ~~i~v 222 (223)
+++++
T Consensus 322 ~~y~f 326 (326)
T cd09019 322 TVYRF 326 (326)
T ss_pred EEEEC
Confidence 98864
No 13
>PLN00194 aldose 1-epimerase; Provisional
Probab=99.97 E-value=2e-28 Score=208.06 Aligned_cols=195 Identities=14% Similarity=0.206 Sum_probs=140.0
Q ss_pred CCCCceeEe---eCCcEEEeeecCCCccEEEEEEecCccccccCCcceEEEEEEEEe-CCcEEEEEEEEeCCCCcEEEee
Q 027452 24 PMQQHGFAR---NMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILN-TKSISTELTITNTDNKPFSFSS 99 (223)
Q Consensus 24 ~~~~HGf~r---~~~w~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~-~~~L~i~~~v~N~~~~~~p~~~ 99 (223)
++.+||+.+ .+.|+|+..+ +++.++|+|++.+.+. ..+|||+|+++++|+|+ +++|+|+++++|. +++|||++
T Consensus 93 ~~~lHGg~~G~~~~~w~v~~~~-~~~~~~v~~~l~~~~~-~~gyP~~~~~~v~Y~L~~~~~L~i~~~~~n~-~~~~p~~~ 169 (337)
T PLN00194 93 PNSLHGGPKGFSKVVWEVAKYK-KGEKPSITFKYHSFDG-EEGFPGDLSVTVTYTLLSSNTLRLDMEAKPL-NKATPVNL 169 (337)
T ss_pred CcccCCCCcccCceEEeEEEec-cCCCcEEEEEEECCCc-CCCCCEEEEEEEEEEECCCCeEEEEEEEEEC-CCCeEEEc
Confidence 356797543 4899998765 2234789999988644 47899999999999998 4899999999999 99999999
Q ss_pred eccceEEEee-----c---eeEEecccCCeeecCCCCCCCC---CCCc--cccceeec-------CCCcceEEeCC----
Q 027452 100 ALHTYFRASV-----T---GASVKGLKGCKTLNKDPDPKNP---MEGK--EERDRVTF-------PGFVDCIYLDA---- 155 (223)
Q Consensus 100 g~HpyF~~~~-----~---~~~i~~~~~~~~~d~~~~~~~~---~~~~--~~~~~~~~-------~~~~D~~y~~~---- 155 (223)
|+||||++++ + .+++++..... +|...+|++. ++.+ .-.....+ ..++|++|...
T Consensus 170 g~HpYFnL~~~~~~~i~~~~L~i~a~~~~~-~d~~~iPtG~~~~v~~t~~Df~~~~~l~~~~~~~~~g~Dh~f~l~~~~~ 248 (337)
T PLN00194 170 AQHTYWNLAGHNSGDILSHKIQIFGSHITP-VDENLIPTGEILPVKGTPFDFTTPKKIGSRINELPKGYDHNYVLDGEEK 248 (337)
T ss_pred cccceEEcCCCCCCCcCCeEEEEecCCEEE-eCCCcCcCCceeeCCCCCcccCCCcCcchhhccccCCcceEEEECCCCc
Confidence 9999999974 2 27777643222 4555556652 2111 00111111 13799999732
Q ss_pred ---CCeEEE-eCCCCCeEEEEeCCCCcEEEeCCCCCC------CC--CCCceEEeccCce---------eceEECCCCeE
Q 027452 156 ---PSVVHL-DNGLGDTITIRNTNWSDAVLWNPHMQM------EA--CYKDFVCVENAKI---------GKVQLEPEQSW 214 (223)
Q Consensus 156 ---~~~~~l-~~~~~~~l~i~~~~~~~~vvwtp~~~~------~~--~~~~~vCiEP~~~---------~~~~L~pGe~~ 214 (223)
...++| ++.++++|+|.++ .|.+||||+.... .. ..+.+||||||.. +.++|+|||.+
T Consensus 249 ~~~~~~a~l~~~~sg~~l~v~t~-~p~v~vyT~n~~~~~~~~~~~~~~~~~~i~lEpq~~pda~n~~~~~~~~L~pge~~ 327 (337)
T PLN00194 249 EGLKKAAKVKDPKSGRVLELWTN-APGMQFYTSNYVNGVKGKGGAVYGKHAGLCLETQGFPDAVNQPNFPSVVVNPGEKY 327 (337)
T ss_pred ccceeeEEEEcCCCCCEEEEEeC-CCEEEEECCCCCCCccCCCCCEeCCCCEEEEeccCCCCcccCCCCCCeEECCCCEE
Confidence 125788 8888999999996 7999999976311 00 1246999999973 23899999999
Q ss_pred EEEEEEEeC
Q 027452 215 TAKQHLSIN 223 (223)
Q Consensus 215 ~~~~~i~v~ 223 (223)
...++++++
T Consensus 328 ~~~t~y~f~ 336 (337)
T PLN00194 328 KHTMLFEFS 336 (337)
T ss_pred EEEEEEEEe
Confidence 999988763
No 14
>TIGR02636 galM_Leloir galactose mutarotase. Members of this protein family act as galactose mutarotase (D-galactose 1-epimerase) and participate in the Leloir pathway for galactose/glucose interconversion. All members of the seed alignment for this model are found in gene clusters with other enzymes of the Leloir pathway. This enzyme family belongs to the aldose 1-epimerase family, described by pfam model pfam01263. However, the enzyme described as aldose 1-epimerase itself (EC 5.1.3.3) is called broadly specific for D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose. The restricted genome context for genes in this family suggests members should act primarily on D-galactose.
Probab=99.96 E-value=6.1e-28 Score=205.04 Aligned_cols=191 Identities=14% Similarity=0.161 Sum_probs=139.9
Q ss_pred CCCCceeE---eeCCcEEEe-eecCCCccEEEEEEecCccccccCCcceEEEEEEEEe-CCcEEEEEEEEeCCCCcEEEe
Q 027452 24 PMQQHGFA---RNMDWSILD-SENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILN-TKSISTELTITNTDNKPFSFS 98 (223)
Q Consensus 24 ~~~~HGf~---r~~~w~v~~-~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~-~~~L~i~~~v~N~~~~~~p~~ 98 (223)
.+.+||+. +.+.|+++. .+ .++|+|++.+.+. ..+||++++++++|+|+ +++|+|+++++ ++++|||+
T Consensus 88 ~n~lHGg~~G~~~~~W~v~~~~~----~~~v~l~~~~~~~-~~gyPg~l~~~vtY~L~~~~~L~i~~~a~--~d~~tp~n 160 (335)
T TIGR02636 88 GNCLHGGPEGFDKRRWNIEELQE----EVQVKFSLESPDG-DQGFPGNLTVSVTYTLTDDNELTIEYEAT--TDKATPFN 160 (335)
T ss_pred CcccCCCCccccccEEeEeeecC----CCEEEEEEECCCc-CCCCCeEEEEEEEEEECCCCEEEEEEEEE--ECCceEEe
Confidence 46799998 778999976 44 5689999988655 47899999999999995 68899999997 89999999
Q ss_pred eeccceEEEeec------e---eEEecccCCeeecCCCCCCCC---CCCc---c-c----cce------eecCCCcceEE
Q 027452 99 SALHTYFRASVT------G---ASVKGLKGCKTLNKDPDPKNP---MEGK---E-E----RDR------VTFPGFVDCIY 152 (223)
Q Consensus 99 ~g~HpyF~~~~~------~---~~i~~~~~~~~~d~~~~~~~~---~~~~---~-~----~~~------~~~~~~~D~~y 152 (223)
+|+|||||+++. . +++++..... +|....|++. +.++ . . .+. .....++|++|
T Consensus 161 lt~H~YFnL~g~~~~~~i~~~~L~i~a~~~~~-~d~~~iPtG~~~~v~~t~~Dfr~~~~l~~~~~~~~~~~~~~g~D~~f 239 (335)
T TIGR02636 161 LTNHVYFNLDGADAGSDVLSHELQLNADRYLP-LDEEGIPLGQLKPVDGTSFDFRKEKAIGQDFLANDQQQLAKGYDHAF 239 (335)
T ss_pred ccccceEEcCCCCCCCChhceEEEEECCcEEE-eCCCcCcCCceecCCCCccccCCCcCcCcccccccccccCCCcceEE
Confidence 999999999752 1 7777644333 4555556652 2111 0 0 000 11112799999
Q ss_pred eCC------CCeEEE-eCCCCCeEEEEeCCCCcEEEeCCCCCC-----C---CCCCceEEeccCce---------ece--
Q 027452 153 LDA------PSVVHL-DNGLGDTITIRNTNWSDAVLWNPHMQM-----E---ACYKDFVCVENAKI---------GKV-- 206 (223)
Q Consensus 153 ~~~------~~~~~l-~~~~~~~l~i~~~~~~~~vvwtp~~~~-----~---~~~~~~vCiEP~~~---------~~~-- 206 (223)
+.. ...++| ++.++++|+|.++ .|.+||||+..-. + ...+..||||||+. +.+
T Consensus 240 ~l~~~~~~~~~~a~l~~~~sg~~l~v~t~-~p~~~vyT~~~~~~~~~~~g~~~~~~~gialE~q~~pd~~n~~~~~~~~~ 318 (335)
T TIGR02636 240 LLNGERLDGKPAAILTSPDEDLSLEVFTT-QPALQIYTGNFLAGTPNRGGKKYVDHAGLALETQFLPDSPNHPEWGDISC 318 (335)
T ss_pred EECCCCCCCceeEEEEcCCCCcEEEEecC-CCEEEEecCCCcCCccCCCCcEeCCCcEEEEecccCCCcccccCCCCCce
Confidence 742 125788 8889999999995 8999999975311 0 11256899999984 223
Q ss_pred EECCCCeEEEEEEEEeC
Q 027452 207 QLEPEQSWTAKQHLSIN 223 (223)
Q Consensus 207 ~L~pGe~~~~~~~i~v~ 223 (223)
+|+|||+++..+.++++
T Consensus 319 ~L~pge~~~~~t~y~f~ 335 (335)
T TIGR02636 319 ILSPGQEYQHQTRYQFI 335 (335)
T ss_pred EECCCCEEEEEEEEEEC
Confidence 59999999999998864
No 15
>PRK11055 galM galactose-1-epimerase; Provisional
Probab=99.95 E-value=7.4e-26 Score=192.32 Aligned_cols=190 Identities=14% Similarity=0.154 Sum_probs=136.8
Q ss_pred CCCCceeE---eeCCcEEEeeecCCCccEEEEEEecCccccccCCcceEEEEEEEEeC-CcEEEEEEEEeCCCCcEEEee
Q 027452 24 PMQQHGFA---RNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNT-KSISTELTITNTDNKPFSFSS 99 (223)
Q Consensus 24 ~~~~HGf~---r~~~w~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~-~~L~i~~~v~N~~~~~~p~~~ 99 (223)
.+.+||.. +.+.|+++..+ .++|+|++.+.+. ..+|||+++++++|+|++ ++|+|+++++ +++++|+++
T Consensus 94 ~n~lHGg~~G~~~~~W~v~~~~----~~~v~l~~~~~~g-~~GyPg~l~~~vtY~L~~~~~l~i~~~a~--~d~~tp~nl 166 (342)
T PRK11055 94 GNQLHGGPEGFDKRRWQIVNQN----DRQVTFSLSSPDG-DQGFPGNLGATVTYRLTDDNRVSITYRAT--VDKPCPVNL 166 (342)
T ss_pred CcccCCCCcccCCcEEEEEEcc----CCEEEEEEECCCc-CCCCCeEEEEEEEEEEcCCCeEEEEEEEE--cCCCeEEec
Confidence 56799985 46789997765 5689999988754 378999999999999985 5788888886 799999999
Q ss_pred eccceEEEee------c---eeEEecccCCeeecCCCCCCCC---CCCcc----c----ccee------ecCCCcceEEe
Q 027452 100 ALHTYFRASV------T---GASVKGLKGCKTLNKDPDPKNP---MEGKE----E----RDRV------TFPGFVDCIYL 153 (223)
Q Consensus 100 g~HpyF~~~~------~---~~~i~~~~~~~~~d~~~~~~~~---~~~~~----~----~~~~------~~~~~~D~~y~ 153 (223)
|+|||||+++ + .++|++..... +|...+|++. ++++. . .+.+ ....++|++|+
T Consensus 167 t~H~YFnL~g~~~~~~i~~h~L~i~a~~~~~-~d~~~iPTG~~~~v~~t~~DFr~~~~l~~~~~~~~~~~~~~g~D~~fv 245 (342)
T PRK11055 167 TNHAYFNLDGAEEGSDVRNHKLQINADEYLP-VDEGGIPNGGLKSVAGTSFDFRQPKTIAQDFLADDDQQKVKGYDHAFL 245 (342)
T ss_pred cccceEECCCCCCCCCccceEEEEecCCEEE-ECcccCccCcEeccCCCcccccCCcCcCcccccchhcccCCCcceEEE
Confidence 9999999975 2 17777643322 4655666652 22210 0 1100 01137999996
Q ss_pred CCC------CeEEE-eCCCCCeEEEEeCCCCcEEEeCCCCCC------C--CCCCceEEeccCce---------e--ceE
Q 027452 154 DAP------SVVHL-DNGLGDTITIRNTNWSDAVLWNPHMQM------E--ACYKDFVCVENAKI---------G--KVQ 207 (223)
Q Consensus 154 ~~~------~~~~l-~~~~~~~l~i~~~~~~~~vvwtp~~~~------~--~~~~~~vCiEP~~~---------~--~~~ 207 (223)
... ..+.| ++.++++|+|.++ .|.+||||+..-. . ...+..||||||.. + .++
T Consensus 246 l~~~~~~~~~~a~l~~~~sg~~l~v~t~-~p~lqvYT~n~~~~~~~~~g~~~~~~~gialE~q~~Pda~n~~~f~~~~~~ 324 (342)
T PRK11055 246 LQAKGDGKKPAAHLWSPDEKLQMKVYTT-APALQFYSGNFLAGTPSRGGGPYADYAGLALESQFLPDSPNHPEWPQPDCI 324 (342)
T ss_pred ECCCCcccceeEEEEcCCCCeEEEEEcC-CCEEEEecCCccCCccCCCCcEeCCCceEEEEcccCCCcccccCCCCCCeE
Confidence 421 24677 8888999999985 8999999975311 0 01246899999962 3 479
Q ss_pred ECCCCeEEEEEEEEe
Q 027452 208 LEPEQSWTAKQHLSI 222 (223)
Q Consensus 208 L~pGe~~~~~~~i~v 222 (223)
|+|||.++..+.+++
T Consensus 325 L~pg~~y~~~t~y~f 339 (342)
T PRK11055 325 LKPGEEYRSLTEYQF 339 (342)
T ss_pred ECCCCEEEEEEEEEE
Confidence 999999998888775
No 16
>PTZ00485 aldolase 1-epimerase; Provisional
Probab=99.92 E-value=1.7e-23 Score=178.84 Aligned_cols=190 Identities=8% Similarity=0.039 Sum_probs=134.2
Q ss_pred ceeEeeCCcEEEeeecCCCccEEEEEEecCccccccCCcceEEEEEEEEe---CCcEEEE---EEEEeCCCCcEEEeeec
Q 027452 28 HGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILN---TKSISTE---LTITNTDNKPFSFSSAL 101 (223)
Q Consensus 28 HGf~r~~~w~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~---~~~L~i~---~~v~N~~~~~~p~~~g~ 101 (223)
+||.+ +.|++.... +.+..+|+|++.+.+. ..+||++++++++|+|+ +++|+|+ ++++|.+++++|+++++
T Consensus 107 ~gf~~-~~W~v~~~~-~~~~~~V~f~~~~~dg-~~GfPG~l~v~vtYtL~~~~~~~L~i~y~a~~~~n~~d~~Tp~nltn 183 (376)
T PTZ00485 107 DAYHK-KHWGMKLIE-TANVIGVRFNYTSPHM-ENGFPGELVSKVTYSIERSKPNVLKTIYDSYIPETSPADATPVNIFN 183 (376)
T ss_pred Cccce-eeeeEEEec-cCCCcEEEEEEECCCc-CCCCCEEEEEEEEEEEecCCCCEEEEEEEEEeccccCCccceeeecc
Confidence 36665 899986432 2224589999988644 48999999999999996 5889999 78899999999999999
Q ss_pred cceEEEee-----------------ce---eEEecccCCeeecCCCCCCCC---CCCc-----c---ccceee----c--
Q 027452 102 HTYFRASV-----------------TG---ASVKGLKGCKTLNKDPDPKNP---MEGK-----E---ERDRVT----F-- 144 (223)
Q Consensus 102 HpyF~~~~-----------------~~---~~i~~~~~~~~~d~~~~~~~~---~~~~-----~---~~~~~~----~-- 144 (223)
|+|||+++ +. |+|++..-.. +|...+|++. +.++ + -++.+. .
T Consensus 184 H~YFNL~g~~~~~~~~~~~~~~~~~i~~h~L~i~a~~~l~-~de~~IPTG~i~~v~~t~fDfr~~~~ig~~~~~~~~~~~ 262 (376)
T PTZ00485 184 HAYWNLNGIPERNGKKNAVWVQPESVRNHWLRVPASRVAE-ADRMAIPTGEFLSVEGTGLDFRQGRVIGDCIDDVALLDR 262 (376)
T ss_pred ceeEEcCCCccccccccccccCCCcccceEEEEecCcEEE-eCcccCccCceeccCCCCccCcCCcccchhhhhhhhhcc
Confidence 99999964 21 7777643222 5666667663 2211 0 011111 1
Q ss_pred -CCCcceEEeCCC-------CeEEE-eCCCCCeEEEEeCCCCcEEEeCCCCCC-------CC--CCCceEEeccCce---
Q 027452 145 -PGFVDCIYLDAP-------SVVHL-DNGLGDTITIRNTNWSDAVLWNPHMQM-------EA--CYKDFVCVENAKI--- 203 (223)
Q Consensus 145 -~~~~D~~y~~~~-------~~~~l-~~~~~~~l~i~~~~~~~~vvwtp~~~~-------~~--~~~~~vCiEP~~~--- 203 (223)
.+++|++|+... ..+.| ++.+|++|+|.++ .|.+||||.+... .. .....||||||.+
T Consensus 263 ~~~G~Dh~fvl~~~~~~~~~~~a~l~~p~sg~~l~v~T~-~P~~qiYT~n~l~~~~~~~~g~~~~~~~giclE~Q~~PDa 341 (376)
T PTZ00485 263 DPCGYDHPLAIDGWEKGKLMLHAEAKSPVTNICMKVYST-FPCMWVYTANNKPLPASGGPGQRYARWTGMGLEPQYFPDV 341 (376)
T ss_pred cCCCCCcceEECCCCCccccEEEEEEcCCCCCEEEEEEC-CCEEEEECCCCCCccccCCCCcCcCCCCEEEEeccCCCCc
Confidence 147999996521 14678 8999999999995 9999999975321 11 1235799999973
Q ss_pred -------eceEECCCCe-EEEEEEEEe
Q 027452 204 -------GKVQLEPEQS-WTAKQHLSI 222 (223)
Q Consensus 204 -------~~~~L~pGe~-~~~~~~i~v 222 (223)
+.++|+|||. +..++.+++
T Consensus 342 ~n~~~~fp~~vl~pge~~~~~~t~y~f 368 (376)
T PTZ00485 342 ANHYPKYPSCIVRRGERRFTETILNEF 368 (376)
T ss_pred ccccCCCCCeEECCCCeEEEEEEEEEE
Confidence 2379999999 776666654
No 17
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013. Proteins, similar to Escherichia coli c4013, are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.88 E-value=1.5e-21 Score=162.68 Aligned_cols=185 Identities=16% Similarity=0.165 Sum_probs=123.1
Q ss_pred CCCCceeEeeCCcEEEeeecC-CCccEEEEEEecCccccccCCcceEEEEEEEEeCCcEEEEEEEEeCCCCcEEEeeecc
Q 027452 24 PMQQHGFARNMDWSILDSENV-EGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSISTELTITNTDNKPFSFSSALH 102 (223)
Q Consensus 24 ~~~~HGf~r~~~w~v~~~~~~-~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~H 102 (223)
.+++||.+++.+|+++..+.+ ++...|+++....+....+|||.++.+++|+|.+++|+++.+|+|.|+++||+++++|
T Consensus 70 ~~~lHG~~~~~p~~~~~~~~~~~~~~~v~l~~~~~~~~~~g~~~~l~~~i~~~l~~~~l~i~~~VtN~g~~~~P~~~~~H 149 (284)
T cd09023 70 EYPLHGRISNTPAELVGVEEDEEGDYEIEVSGEVREAALFGENLRLERTIETDLGSNEIRLEDRVTNEGFRPTPHMLLYH 149 (284)
T ss_pred cccCcccccCCCcceEEEEeccCCCeEEEEEEEEEEeeeecCceEEEEEEEEecCCceEEEEEEEEeCCCCCCcceEEee
Confidence 689999999999999887642 2344566666554434467999999999999999999999999999999999999999
Q ss_pred ceEEEe----eceeEEecccCCeeecCCCCCCCCCCCccccceeec--CCCcceEEeC-----C--CCeEEE-eCCCCCe
Q 027452 103 TYFRAS----VTGASVKGLKGCKTLNKDPDPKNPMEGKEERDRVTF--PGFVDCIYLD-----A--PSVVHL-DNGLGDT 168 (223)
Q Consensus 103 pyF~~~----~~~~~i~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~~D~~y~~-----~--~~~~~l-~~~~~~~ 168 (223)
|||..+ +.++.++...... .|.... .+. ..-..+.- ....+.+|.. . ...+.| ++..+..
T Consensus 150 ~n~~~p~l~~~~~l~~p~~~~~p-~~~~~~-~~~----~~~~~~~~p~~~~~e~v~~~~~~~d~~g~~~~~l~~~~~g~~ 223 (284)
T cd09023 150 VNFGYPLLDEGARLEIPSKEVTP-RDAHAA-EGL----ASWNTYLAPTPGFAEQVYFHEPAADEDGRAPAALVNPRLGLG 223 (284)
T ss_pred EEcCCcccCCCCEEEeccccccc-CChhhc-ccc----cccccccCCCCCCccEEEEEeccccCCCceeEEEEcCCCCcE
Confidence 999875 2335554321111 111100 000 00000000 1112233321 1 235777 7777777
Q ss_pred EEEEeC--CCCcEEEeCCCCCCCCCCCceEEeccCce-----------e-ceEECCCCeEEEEE
Q 027452 169 ITIRNT--NWSDAVLWNPHMQMEACYKDFVCVENAKI-----------G-KVQLEPEQSWTAKQ 218 (223)
Q Consensus 169 l~i~~~--~~~~~vvwtp~~~~~~~~~~~vCiEP~~~-----------~-~~~L~pGe~~~~~~ 218 (223)
+.+..+ .+|++++|+.... .+..+||||++. + .+.|+|||++++++
T Consensus 224 ~~l~~~~~~~p~~~~W~~~~~----~~y~lalEP~T~~p~~~~~~~~~g~l~~L~PGEs~~~~l 283 (284)
T cd09023 224 VEVRFDTDTLPYLTQWKNTGA----GAYVLGLEPATNFPNGRAFEREQGELPTLAPGESRSYRL 283 (284)
T ss_pred EEEEEehhhCCHHHHHhccCC----CccEEEEccccCCCcchHHHHHCCCcceECCCCeEEEee
Confidence 888876 5999999996531 144677999972 2 29999999998764
No 18
>KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism]
Probab=99.78 E-value=1.2e-17 Score=137.06 Aligned_cols=191 Identities=17% Similarity=0.253 Sum_probs=135.5
Q ss_pred CCCCce----eEeeCCcEEEeeecCCCccEEEEEEecCccccccCCcceEEEEEEEEe-CCcEEEEEEEEeCCCCcEEEe
Q 027452 24 PMQQHG----FARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILN-TKSISTELTITNTDNKPFSFS 98 (223)
Q Consensus 24 ~~~~HG----f~r~~~w~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~-~~~L~i~~~v~N~~~~~~p~~ 98 (223)
++.+|| |.+ ..|++..... ...++|+..+++ ..++||++.++.++|+|. ++.|.+.+..+=. +++.|++
T Consensus 106 ~n~lHgg~~gf~~-~~w~v~~~~~---~~~i~f~~~s~d-g~eg~PG~l~V~vtYtLn~~n~l~i~~~A~~~-~~~TPiN 179 (353)
T KOG1604|consen 106 KNTLHGGIKGFDK-VIWEVVKHQP---DGVIVFSHLSPD-GDEGFPGDLKVTVTYTLNVANRLLIMMEATAL-DKATPIN 179 (353)
T ss_pred CccccCCcccccc-eEEEEEEecC---CCEEEEEEECCC-CCCCCCccEEEEEEEEEccCCeeeeeehhhcc-CCCccee
Confidence 556666 555 7899998761 222588888754 457899999999999998 5889999988633 8999999
Q ss_pred eeccceEEEee-----ce---eEEecccCCeeecCCCCCCCCCC---Cc--------cccce-eecC--CCcceEEeCC-
Q 027452 99 SALHTYFRASV-----TG---ASVKGLKGCKTLNKDPDPKNPME---GK--------EERDR-VTFP--GFVDCIYLDA- 155 (223)
Q Consensus 99 ~g~HpyF~~~~-----~~---~~i~~~~~~~~~d~~~~~~~~~~---~~--------~~~~~-~~~~--~~~D~~y~~~- 155 (223)
+++|+|||+.+ +. ++|.+....+ .|...+|++.+. ++ .-++. -.+. .+.|..|...
T Consensus 180 LtnHsYfNL~g~~s~~I~~heI~i~a~~~~e-vd~~~iPTG~I~~v~~t~fD~r~p~~lgd~~~~~~~i~g~d~n~~~~~ 258 (353)
T KOG1604|consen 180 LTNHSYFNLAGHNSGGIEGHEIQIEASKITE-VDDTLIPTGEITPVKGTTFDFRKPTVLGDRIKQFECIVGYDINYVLDG 258 (353)
T ss_pred eccceeEeccCCCCCCccceEEEEeecccEe-cCCccccccceEeccCccccccCCeeccccccccccccCCCcceEEcc
Confidence 99999999974 22 7777755444 466667777531 11 01111 1233 4677777532
Q ss_pred --C-----CeEEE-eCCCCCeEEEEeCCCCcEEEeCCCC------CCCC--CCCceEEeccCce---------eceEECC
Q 027452 156 --P-----SVVHL-DNGLGDTITIRNTNWSDAVLWNPHM------QMEA--CYKDFVCVENAKI---------GKVQLEP 210 (223)
Q Consensus 156 --~-----~~~~l-~~~~~~~l~i~~~~~~~~vvwtp~~------~~~~--~~~~~vCiEP~~~---------~~~~L~p 210 (223)
+ ..+.+ ++.++|.++|.+ +.|.+++||.+- .... ....++|+|++.+ ..+.|+|
T Consensus 259 ~~~~~~l~~v~k~~hp~Sgr~lEv~T-nqPgvqfYTgn~~~~~~gk~g~~y~k~g~~cletq~~pda~n~~~fp~v~l~p 337 (353)
T KOG1604|consen 259 SVPPNKLRKVAKAVHPKSGRKLEVST-NQPGVQFYTGNFLPDIKGKKGAVYPKHGGLCLETQYFPDAVNHPNFPSVILRP 337 (353)
T ss_pred CCCCcccEEEEEEEcCccCcEEEEEe-CCCcEEEEeccccccccCCCceEeeccceEEeecccCccccccCCCCceEecC
Confidence 1 25677 899999999999 499999999522 1111 1246899999874 2499999
Q ss_pred CCeEEEEEEEEe
Q 027452 211 EQSWTAKQHLSI 222 (223)
Q Consensus 211 Ge~~~~~~~i~v 222 (223)
||++...+.+++
T Consensus 338 GE~Y~h~~~y~F 349 (353)
T KOG1604|consen 338 GETYTHETVYKF 349 (353)
T ss_pred CCeeeeEEEEEE
Confidence 999999888765
No 19
>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like. Salmonella enterica serovar Typhi DeoM (earlier named as DeoX) is a mutarotase with high specificity for deoxyribose. It is encoded by one of four genes beonging to the deoK operon. This operon has also been found in Escherichia coli where it is more common in pathogenic than in commensal strains and is associated with pathogenicity. It has been found on a pathogenicity island from a human blood isolate AL863 and confers the ability to use deoxyribose as a carbon source; deoxyribose is not fermented by non-pathogenic E.coli K-12. Proteins in this family are members of the aldose-1-epimerase superfamily. Aldose 1-epimerases, or mutarotases, are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechani
Probab=99.51 E-value=7.2e-13 Score=110.38 Aligned_cols=190 Identities=12% Similarity=0.085 Sum_probs=108.4
Q ss_pred CCCCceeEeeCCcEEEeeec--CCCccEEEEEEecCccccccCCcceEEEEEEEEeC--CcEEEEEEEEeCCCCcEEEee
Q 027452 24 PMQQHGFARNMDWSILDSEN--VEGNPVITLELKDGPYSRAMWDFSFQALFKVILNT--KSISTELTITNTDNKPFSFSS 99 (223)
Q Consensus 24 ~~~~HGf~r~~~w~v~~~~~--~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~--~~L~i~~~v~N~~~~~~p~~~ 99 (223)
.+++||-..+.+|+...... ++++..++++-... ...+||++|+++.+|+|.. +.|+|+++|+|.++.|||+.+
T Consensus 61 ~~~LHG~~~~~p~~~~w~~~~~d~~~~~l~l~g~~~--~~~~fg~~y~a~~~i~L~~g~~~l~i~~~VtN~g~~p~p~~~ 138 (293)
T cd09269 61 THPLHGEFPCAPMDEAWLEVGEDASGDYLALTGEYE--YVQGFGHHYLAQPSVTLRAGSALFDIGMDVTNLSAQPMPLMY 138 (293)
T ss_pred ccCCcCCcCCCCccceEEEEEecCCCCEEEEEEEEE--eeeccCccEEEEEEEEEeCCCCEEEEEEEEEECCCCCChhhE
Confidence 68999996656655442221 22234455544332 2257999999999999985 889999999999999999999
Q ss_pred eccceEEEe-eceeEEecccC-CeeecCCC---CCCCCCCC-----ccccc---eeecCCCc--ceEEeC-C----C--C
Q 027452 100 ALHTYFRAS-VTGASVKGLKG-CKTLNKDP---DPKNPMEG-----KEERD---RVTFPGFV--DCIYLD-A----P--S 157 (223)
Q Consensus 100 g~HpyF~~~-~~~~~i~~~~~-~~~~d~~~---~~~~~~~~-----~~~~~---~~~~~~~~--D~~y~~-~----~--~ 157 (223)
++||+|... +..+..+-... ......++ .|+..++. ..... .+...... ..+|.. . . .
T Consensus 139 ~~H~nfg~~~garl~~p~~~~~~~~~~~~p~~v~p~~~w~~~~~~~~~~~~~~~~~~~P~~~~~E~V~~~~~~~~~~~~~ 218 (293)
T cd09269 139 MCHMNYAYVEGARIVQNLPDEAFVLRRSVPAHVKPTPAWLAYNEALVADPARGDVLDKPDLYDPEIVFFADDLGKYTGWA 218 (293)
T ss_pred ecccccCCCCCCEEEccCCcccceeeecccCccCCchhhccchHHHhhCchhhhhccCCCCCCccEEEEeecccccCCcE
Confidence 999999873 22222221100 01000010 01111100 00000 01101111 233321 1 1 3
Q ss_pred eEEE-eCCCCCeEEEEeC--CCCcEEEeCCCCCCCCCCCceEEe-ccCce-----------ec-eEECCCCeEEEEEEE
Q 027452 158 VVHL-DNGLGDTITIRNT--NWSDAVLWNPHMQMEACYKDFVCV-ENAKI-----------GK-VQLEPEQSWTAKQHL 220 (223)
Q Consensus 158 ~~~l-~~~~~~~l~i~~~--~~~~~vvwtp~~~~~~~~~~~vCi-EP~~~-----------~~-~~L~pGe~~~~~~~i 220 (223)
.+.| ++. +..+.++.+ .||++..|--... ...-..+ ||.+. |. +.|+|||++++++++
T Consensus 219 ~~~l~n~~-g~~~~~~f~~~~lP~~~~W~~~~~----~~~v~~~~~PaT~~p~g~~~ar~~G~l~~L~pGe~~~f~l~~ 292 (293)
T cd09269 219 HFMMVHPD-GDAFYTRFSTAEFPYATRWILYNG----DQQVAAFALPATCRPEGYLAAKEAGTLRTLAPGETRRFSVTT 292 (293)
T ss_pred EEEEECCC-CCEEEEEEchhhCChhheehhcCC----CcceEEEEccCCCCcCChHHHHHCCCcceeCCCCeEEEEEec
Confidence 5666 555 446777764 7999999973221 1234455 59872 33 899999999987754
No 20
>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A.
Probab=99.15 E-value=4.6e-10 Score=94.17 Aligned_cols=187 Identities=16% Similarity=0.131 Sum_probs=100.7
Q ss_pred CCCCceeEeeCCcEEEeeec-CCCccEEEEEEecCccccccCCcceEEEEEEEEe--CCcEEEEEEEEeCCCCcEEEeee
Q 027452 24 PMQQHGFARNMDWSILDSEN-VEGNPVITLELKDGPYSRAMWDFSFQALFKVILN--TKSISTELTITNTDNKPFSFSSA 100 (223)
Q Consensus 24 ~~~~HGf~r~~~w~v~~~~~-~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~--~~~L~i~~~v~N~~~~~~p~~~g 100 (223)
.+|+||-..+.+|+.+..+. +++...++++-.-.+. ..|=.+++++-++++. .+.++|..+|+|.+.++||+.+.
T Consensus 85 ~~~LHG~i~~~Pa~~v~~~~~~~~~~~i~v~G~v~~~--~~fg~~l~l~r~i~~~~g~~~i~i~d~VtN~~~~p~p~m~l 162 (302)
T PF14486_consen 85 TYPLHGRISNTPAEHVWLEIWDGDGYEIEVSGEVREA--AGFGENLRLERTIRLRAGSNTIRIEDRVTNLGFQPMPLMYL 162 (302)
T ss_dssp EE-TTBSGGGS--SEEEEEEESSTT--EEEEEEEEEE--ETTTEEEEEEEEEEE-TT-SEEEEEEEEEE-SSS-EEEEEE
T ss_pred cccccccccCCCcceEEEEEecCCCcEEEEEEEEEEE--EeccCcEEEEEEEEEECCCcEEEEEEEEEECCCCCchhHHh
Confidence 48999999999998666543 2223345554332222 3455667777777775 67899999999999999999999
Q ss_pred ccceEEEeec----eeEEecccCCeeecCCCCCCCCCCCccccceeec--CCCcceEEeC-----CCCe--EEE-eCCCC
Q 027452 101 LHTYFRASVT----GASVKGLKGCKTLNKDPDPKNPMEGKEERDRVTF--PGFVDCIYLD-----APSV--VHL-DNGLG 166 (223)
Q Consensus 101 ~HpyF~~~~~----~~~i~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~~D~~y~~-----~~~~--~~l-~~~~~ 166 (223)
.|.-|..+-+ ++..+......+.+........+ ..+.- .+.-+.+|.. ..+. +.| .+..+
T Consensus 163 yH~N~G~pll~eg~ri~~p~~~~~~~~~~a~~~~~~~------~~~~~P~~~~~E~Vy~~~~~~d~~G~~~~~l~n~~~g 236 (302)
T PF14486_consen 163 YHMNFGYPLLDEGARIVAPTKEVTPRDDRAAEGIADW------DRMPAPQPGFPEQVYFHDLLADEDGWAHAALVNPDGG 236 (302)
T ss_dssp EEEEE-TTT-STT-EEE--EEEEEESSGGGGGGSTTT------TB---S-TT---EEEEEEE---TTSEEEEEEE-SSSS
T ss_pred hhhccCccccCCCcEEEcCcccccCCchhhhcCCccc------eecCCCCCCCCcEEEEecccccCCCcEEEEEECCCCC
Confidence 9999887622 23333221111111000000000 00100 1122344431 1333 666 77777
Q ss_pred CeEEEEeC--CCCcEEEeCCCCCCCCCCCceEEeccCce-----------ec-eEECCCCeEEEEEEEEe
Q 027452 167 DTITIRNT--NWSDAVLWNPHMQMEACYKDFVCVENAKI-----------GK-VQLEPEQSWTAKQHLSI 222 (223)
Q Consensus 167 ~~l~i~~~--~~~~~vvwtp~~~~~~~~~~~vCiEP~~~-----------~~-~~L~pGe~~~~~~~i~v 222 (223)
..+.|+.+ .+|++..|-.... ...-++|||.+. |. ..|+|||+++++++++|
T Consensus 237 ~g~~v~f~~~~lP~~~~Wk~~~~----~~yv~gLEP~T~~p~g~~~~~~~G~l~~L~pge~~~~~l~~~v 302 (302)
T PF14486_consen 237 LGFEVRFDTSQLPYLTQWKNYGG----GEYVLGLEPATCRPEGRAAAREAGTLPMLAPGESREFSLEFGV 302 (302)
T ss_dssp -EEEEEEETTTS-EEEEEEEES-----T-EEEEEEEESS-SS-HHHHHHTT--EEE-TT-EEEEEEEEE-
T ss_pred cEEEEEEchHHCChhHhheeCCC----CEeEEEEecccCCCCCHHHHHhCCCcceECCCCeEEEEEEecC
Confidence 88887774 7999999975431 134689999972 33 89999999999999875
No 21
>PF14315 DUF4380: Domain of unknown function (DUF4380)
Probab=93.27 E-value=0.5 Score=39.22 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=38.8
Q ss_pred eCCcEEEeeecCCCccEEEEEEecCccccccCCcceEEEEEEEEeCCc--EEEEEEEEeCCCCcEEEe
Q 027452 33 NMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKS--ISTELTITNTDNKPFSFS 98 (223)
Q Consensus 33 ~~~w~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~--L~i~~~v~N~~~~~~p~~ 98 (223)
+.+|++.. . .+.|+|+-..++. ..++++.+++|.+++ ++++.+++|.++.+.+++
T Consensus 87 ~~p~~~~~-~----~~~v~L~s~~~~~------tgiq~~~~i~l~~~~~~i~v~~~i~N~~~~~~~~a 143 (274)
T PF14315_consen 87 NGPYEVEI-D----DDGVRLTSPPSPK------TGIQKERTITLDADRPSIEVTHRITNIGDWPVEWA 143 (274)
T ss_pred CCceeEEE-c----CCEEEEecCCCCc------cCcEEEEEEEECCCCCEEEEEEEEEeCCCCcceee
Confidence 35566654 2 5666665543322 257889999998655 999999999999987653
No 22
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=90.62 E-value=0.43 Score=32.92 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=28.8
Q ss_pred EEEEeCCcEEEEEEEEeCCCCcEEEeeeccceEEEeeceeEEe
Q 027452 73 KVILNTKSISTELTITNTDNKPFSFSSALHTYFRASVTGASVK 115 (223)
Q Consensus 73 ~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~~~~~~i~ 115 (223)
.++|.....+.+++|.|+||+ |++.|.|-.|.=.+..+.++
T Consensus 12 ~IelN~gr~~~~i~V~NtGDR--PIQVGSHfHF~EvN~aL~FD 52 (106)
T COG0832 12 DIELNAGRPTVTIEVANTGDR--PIQVGSHFHFFEVNRALSFD 52 (106)
T ss_pred cEEEeCCCcceEEEEeecCCC--ceEeecceeehhhCcceeec
Confidence 456777778899999999999 55667777774323235555
No 23
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=89.70 E-value=0.42 Score=33.05 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=25.3
Q ss_pred EEEeCCcEEEEEEEEeCCCCcEEEeeeccceEEEeeceeEEe
Q 027452 74 VILNTKSISTELTITNTDNKPFSFSSALHTYFRASVTGASVK 115 (223)
Q Consensus 74 y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~~~~~~i~ 115 (223)
+.|..+.=+++++|+|+||+ |++.|.|-.|.=.+..|.++
T Consensus 12 I~lN~gr~~~~l~V~N~GDR--PIQVGSH~HF~E~N~aL~FD 51 (100)
T PF00699_consen 12 IELNAGRERITLEVTNTGDR--PIQVGSHYHFFEVNPALEFD 51 (100)
T ss_dssp EETTTTSEEEEEEEEE-SSS---EEEETTS-GGGS-TTEES-
T ss_pred EEecCCCcEEEEEEEeCCCc--ceEEccccCHHHHhHHhhhh
Confidence 45666778999999999998 56678887774222226555
No 24
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=89.69 E-value=0.54 Score=32.58 Aligned_cols=40 Identities=13% Similarity=0.211 Sum_probs=28.6
Q ss_pred EEEeCCcEEEEEEEEeCCCCcEEEeeeccceEEEeeceeEEe
Q 027452 74 VILNTKSISTELTITNTDNKPFSFSSALHTYFRASVTGASVK 115 (223)
Q Consensus 74 y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~~~~~~i~ 115 (223)
+.|..+.=+++++|+|+||+ |++.|.|-.|-=.+..|.++
T Consensus 13 I~ln~gr~~~~l~V~NtGDR--PIQVGSHyHF~E~N~aL~FD 52 (101)
T TIGR00192 13 ITINEGRKTVSVKVKNTGDR--PIQVGSHFHFFEVNRALDFD 52 (101)
T ss_pred EEeCCCCcEEEEEEEeCCCc--ceEEccccchhhcCcceeec
Confidence 46676677899999999998 56678887774223236665
No 25
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=89.68 E-value=0.51 Score=32.72 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=28.4
Q ss_pred EEEeCCcEEEEEEEEeCCCCcEEEeeeccceEEEeeceeEEe
Q 027452 74 VILNTKSISTELTITNTDNKPFSFSSALHTYFRASVTGASVK 115 (223)
Q Consensus 74 y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~~~~~~i~ 115 (223)
+.|..+.=+++++|+|+||+ |++.|.|-.|-=.+..|.++
T Consensus 13 I~lN~gr~~~~l~V~NtGDR--pIQVGSH~HF~E~N~aL~FD 52 (101)
T cd00407 13 IELNAGREAVTLKVKNTGDR--PIQVGSHYHFFEVNPALKFD 52 (101)
T ss_pred eEeCCCCCEEEEEEEeCCCc--ceEEccccchhhcCcccccc
Confidence 46666677899999999998 56678887774323225555
No 26
>PRK13203 ureB urease subunit beta; Reviewed
Probab=89.40 E-value=0.56 Score=32.57 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=28.0
Q ss_pred EEEeCCcEEEEEEEEeCCCCcEEEeeeccceEEEeeceeEEe
Q 027452 74 VILNTKSISTELTITNTDNKPFSFSSALHTYFRASVTGASVK 115 (223)
Q Consensus 74 y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~~~~~~i~ 115 (223)
+.|..+.=+++++|+|+||+ |++.|.|-.|-=.+..|.++
T Consensus 13 I~ln~gr~~~~l~V~NtGDR--PIQVGSH~HF~E~N~aL~FD 52 (102)
T PRK13203 13 IELNAGRETVTLTVANTGDR--PIQVGSHYHFFEVNPALSFD 52 (102)
T ss_pred EEeCCCCCEEEEEEEeCCCC--ceEEccccchhhcCcchhcc
Confidence 46666677899999999998 56677887774222225554
No 27
>PRK13202 ureB urease subunit beta; Reviewed
Probab=87.74 E-value=0.88 Score=31.70 Aligned_cols=40 Identities=13% Similarity=0.216 Sum_probs=27.5
Q ss_pred EEEeCCc-EEEEEEEEeCCCCcEEEeeeccceEEEeeceeEEe
Q 027452 74 VILNTKS-ISTELTITNTDNKPFSFSSALHTYFRASVTGASVK 115 (223)
Q Consensus 74 y~L~~~~-L~i~~~v~N~~~~~~p~~~g~HpyF~~~~~~~~i~ 115 (223)
+.|..+. =+++++|+|+||+ |++.|.|-.|-=.+..|.++
T Consensus 13 I~ln~grr~~~~l~V~NtGDR--PIQVGSHyHF~E~N~aL~FD 53 (104)
T PRK13202 13 IEMNAAALSRLQMRIINAGDR--PVQVGSHVHLPQANRALSFD 53 (104)
T ss_pred EEeCCCCCceEEEEEEeCCCC--ceEEccccchhhcCcceeec
Confidence 4566553 5889999999998 56678887774323236665
No 28
>PRK13201 ureB urease subunit beta; Reviewed
Probab=86.73 E-value=0.98 Score=32.89 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=28.0
Q ss_pred EEEeCCcEEEEEEEEeCCCCcEEEeeeccceEEEeeceeEEe
Q 027452 74 VILNTKSISTELTITNTDNKPFSFSSALHTYFRASVTGASVK 115 (223)
Q Consensus 74 y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~~~~~~i~ 115 (223)
+.|..+.=+++++|+|+||+ |++.|-|-.|-=.+..|.++
T Consensus 13 I~lN~gr~~~~l~V~NtGDR--PIQVGSHyHF~EvN~aL~FD 52 (136)
T PRK13201 13 VEINNHHPETVIEVENTGDR--PIQVGSHFHFYEANAALDFE 52 (136)
T ss_pred eEeCCCCCEEEEEEEeCCCc--ceEeccccchhhcCcccccc
Confidence 46666677899999999998 56677887774322225554
No 29
>PRK13205 ureB urease subunit beta; Reviewed
Probab=86.54 E-value=1 Score=33.61 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=28.4
Q ss_pred EEEeCCcEEEEEEEEeCCCCcEEEeeeccceEEEeeceeEEe
Q 027452 74 VILNTKSISTELTITNTDNKPFSFSSALHTYFRASVTGASVK 115 (223)
Q Consensus 74 y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~~~~~~i~ 115 (223)
+.|..+.=+++++|+|+||+ |++.|.|-.|-=.+..|.|+
T Consensus 13 IelN~GR~~i~L~V~NtGDR--PIQVGSHyHF~EvN~AL~FD 52 (162)
T PRK13205 13 LTGNVGREAKTIEIINTGDR--PVQIGSHFHFAEVNPSISFD 52 (162)
T ss_pred eEeCCCCcEEEEEEEeCCCC--ceEeccccchhhcCcccccc
Confidence 46676677899999999998 56678887774323225555
No 30
>PRK13204 ureB urease subunit beta; Reviewed
Probab=85.57 E-value=1.2 Score=33.29 Aligned_cols=51 Identities=16% Similarity=0.025 Sum_probs=33.0
Q ss_pred cCCcceEEE-EEEEEeCCcEEEEEEEEeCCCCcEEEeeeccceEEEeeceeEEe
Q 027452 63 MWDFSFQAL-FKVILNTKSISTELTITNTDNKPFSFSSALHTYFRASVTGASVK 115 (223)
Q Consensus 63 ~~P~~f~l~-~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~~~~~~i~ 115 (223)
.-|+.+.+. -.+.|..+.=.++++|+|+||+ |+..|-|-.|-=.+..|.|+
T Consensus 24 ~~pGei~~~~~~I~lN~gr~~~~l~V~NtGDR--PIQVGSHyHF~EvN~aL~FD 75 (159)
T PRK13204 24 RPVGGYVLAKDPIEINQGRPRTTLTVRNTGDR--PIQIGSHFHFFEVNRYLEFD 75 (159)
T ss_pred CCCCeEEeCCCCeEeCCCCcEEEEEEEeCCCC--ceEeccccchhhcCcccccc
Confidence 345544332 2356777777899999999998 56677887774222225554
No 31
>PRK13198 ureB urease subunit beta; Reviewed
Probab=85.23 E-value=1.3 Score=33.13 Aligned_cols=51 Identities=12% Similarity=0.050 Sum_probs=33.1
Q ss_pred cCCcceEEE-EEEEEeCCcEEEEEEEEeCCCCcEEEeeeccceEEEeeceeEEe
Q 027452 63 MWDFSFQAL-FKVILNTKSISTELTITNTDNKPFSFSSALHTYFRASVTGASVK 115 (223)
Q Consensus 63 ~~P~~f~l~-~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~~~~~~i~ 115 (223)
.-|+.+.+. -.+.|..+.=+++++|+|+||+ |+..|-|-.|-=.+..|.++
T Consensus 29 ~~pGei~~~~g~I~lN~gr~~~~l~V~NtGDR--PIQVGSHyHF~EvN~aL~FD 80 (158)
T PRK13198 29 TPLGGLVLAETPITFNENKPVTKVKVRNTGDR--PIQVGSHFHFFEVNRALEFD 80 (158)
T ss_pred CCCceEEeCCCCeEeCCCCcEEEEEEEeCCCC--ceEeccccchhhcCcccccc
Confidence 346654332 2367777778899999999998 56677777774222225554
No 32
>PF09095 DUF1926: Domain of unknown function (DUF1926); InterPro: IPR015179 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents a domain found in prokaryotic alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1.25 from EC). This domain adopts a beta-sandwich fold, in which two layers of anti-parallel beta-sheets are arranged in a nearly parallel fashion. The exact function of this domain is, as yet, unknown, however it has been proposed that it may play a role in transglycosylation reactions []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A.
Probab=81.83 E-value=6.4 Score=32.79 Aligned_cols=54 Identities=15% Similarity=0.243 Sum_probs=34.6
Q ss_pred eCCcEEEeeecCCCccEEEEEEecCccccccCCcceEEEEEEEEeCCcEEEEEEEEeCCCCcEEE
Q 027452 33 NMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSISTELTITNTDNKPFSF 97 (223)
Q Consensus 33 ~~~w~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L~i~~~v~N~~~~~~p~ 97 (223)
+.+|++.... ..++|+-... ..+..+.++-+|+|.+++|.++|+++ .++.+..+
T Consensus 123 ~~~y~~~~~~-----~~v~f~r~G~-----~~~~~~~l~K~y~l~~~~l~V~Y~l~-~~~~~~~~ 176 (278)
T PF09095_consen 123 NQPYELEVNR-----DEVTFERDGG-----VEGHPITLEKRYRLTKNGLQVDYRLT-ESPEPISL 176 (278)
T ss_dssp SS--EEEEES-----SEEEEEEEEE-----ESEEEEEEEEEEEEETTEEEEEEEEE--ESS---E
T ss_pred CCceEEEecC-----CceEEEEecc-----cccCceEEEEEEEEcCCEEEEEEEEE-ECCCCcce
Confidence 4678776553 2366654321 15678899999999999999999999 56555444
No 33
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=81.37 E-value=5.6 Score=26.81 Aligned_cols=39 Identities=13% Similarity=0.168 Sum_probs=29.2
Q ss_pred CCcceEEEEEEEEeCCcEEEEEEEEeCCCCcEEEeeeccce
Q 027452 64 WDFSFQALFKVILNTKSISTELTITNTDNKPFSFSSALHTY 104 (223)
Q Consensus 64 ~P~~f~l~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~Hpy 104 (223)
-|+.++++..|.- ..-.+.+++.|.|+++..|.+--+.|
T Consensus 5 l~~~~~v~~~~~~--~~g~l~l~l~N~g~~~~~~~v~~~~y 43 (89)
T PF05506_consen 5 LPYAPEVTARYDP--ATGNLRLTLSNPGSAAVTFTVYDNAY 43 (89)
T ss_pred CCCCCEEEEEEEC--CCCEEEEEEEeCCCCcEEEEEEeCCc
Confidence 3666777666654 33378888899999999998887666
No 34
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=79.83 E-value=2.3 Score=33.37 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=34.4
Q ss_pred cCCcceEEE-EEEEEeCCcEEEEEEEEeCCCCcEEEeeeccceEEEeeceeEEe
Q 027452 63 MWDFSFQAL-FKVILNTKSISTELTITNTDNKPFSFSSALHTYFRASVTGASVK 115 (223)
Q Consensus 63 ~~P~~f~l~-~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~~~~~~i~ 115 (223)
.+|+.+.+. =.+.|..+.=+++++|+|+||+ |++.|.|-.|-=.+..+.|+
T Consensus 110 l~PGei~~~~~~I~lN~gr~~~~l~V~NtGDR--PIQVGSHyHF~E~N~aL~FD 161 (208)
T PRK13192 110 LYPGEILPGDGEIELNAGRPAVTLDVTNTGDR--PIQVGSHFHFFEVNRALRFD 161 (208)
T ss_pred cCCCEEEcCCCCeeeCCCCCEEEEEEEeCCCC--ceeeccccchhhcCchhhcc
Confidence 468765442 2367777777899999999998 56677887774223225554
No 35
>PRK13986 urease subunit alpha; Provisional
Probab=77.93 E-value=2.7 Score=33.44 Aligned_cols=51 Identities=8% Similarity=0.046 Sum_probs=33.7
Q ss_pred cCCcceEEE-EEEEEeCCcEEEEEEEEeCCCCcEEEeeeccceEEEeeceeEEe
Q 027452 63 MWDFSFQAL-FKVILNTKSISTELTITNTDNKPFSFSSALHTYFRASVTGASVK 115 (223)
Q Consensus 63 ~~P~~f~l~-~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~~~~~~i~ 115 (223)
.-|+.+.+. -.+.|..+.=+++++|+|+||+ |+..|.|-.|-=.+..+.|+
T Consensus 106 ~~PGe~~~~~~~I~lN~gr~~~~l~V~NtGDR--PIQVGSHyHF~E~N~aL~FD 157 (225)
T PRK13986 106 LVPGELFLKDEDITINAGKKAVSVKVKNVGDR--PVQVGSHFHFFEVNRCLEFD 157 (225)
T ss_pred CCCceEecCCCCeecCCCCcEEEEEEEeCCCC--ceeeccccchhhcCchhhcc
Confidence 456655432 2367777777899999999998 56677887774222225554
No 36
>PRK05089 cytochrome C oxidase assembly protein; Provisional
Probab=76.32 E-value=15 Score=28.68 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=36.8
Q ss_pred ccEEEEEEecCccccccCCcceEEEEE-EEEe-CCcEEEEEEEEeCCCCcEEEee
Q 027452 47 NPVITLELKDGPYSRAMWDFSFQALFK-VILN-TKSISTELTITNTDNKPFSFSS 99 (223)
Q Consensus 47 ~~~v~l~l~~~~~~~~~~P~~f~l~~~-y~L~-~~~L~i~~~v~N~~~~~~p~~~ 99 (223)
+..|+.++..+- ..+-||.|+-+++ .++. +..-.+.|.++|.+++++.-..
T Consensus 62 ~R~I~V~F~a~~--~~~lpW~F~P~q~~v~V~pGE~~~~~y~a~N~sd~~i~g~A 114 (188)
T PRK05089 62 SRTITVEFDANV--NGGLPWEFKPEQRSVDVHPGELNLVFYEAENLSDRPIVGQA 114 (188)
T ss_pred CcEEEEEEeccC--CCCCCceEEeeeeEEEEcCCCeEEEEEEEECCCCCcEEEEE
Confidence 456777776553 3568999986654 4455 6778889999999999986543
No 37
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=72.25 E-value=23 Score=30.50 Aligned_cols=63 Identities=21% Similarity=0.290 Sum_probs=40.2
Q ss_pred eCCcEEEeee--cCCCccEEEEEEecCccccccCCcceEEEEEEEEeCC--cEEEEEEEEeCCCCcEEEeeeccceEEE
Q 027452 33 NMDWSILDSE--NVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTK--SISTELTITNTDNKPFSFSSALHTYFRA 107 (223)
Q Consensus 33 ~~~w~v~~~~--~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~--~L~i~~~v~N~~~~~~p~~~g~HpyF~~ 107 (223)
+..|++.... -.++...|+|++...+ ...++.+|++..+ .+.++++|+|.++.+.. ..+|+.+
T Consensus 144 ~~~~~~~~~~~~l~~~~~~v~l~~~~~~--------G~~v~k~ytf~~~sY~i~v~~~v~N~~~~~~~----~~~~~~~ 210 (366)
T TIGR03593 144 RTVWQAEGGEYTLTPGQLPVTLTWDNSN--------GVTVTKTYTFDRDSYLIDVEYKVTNNGDAPVS----LSLYGQL 210 (366)
T ss_pred CceEEeCCCceeeCCCCEEEEEEEECCC--------CeEEEEEEEEeCCeEEEEeEEEEEeCCCCCee----EeeeEEE
Confidence 4567775331 1122235666665432 3688999999865 58899999999987654 3455554
No 38
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=69.33 E-value=5.9 Score=34.11 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=22.8
Q ss_pred EEEEEEeCCcEEEEEEEEeCCCCcEEEe
Q 027452 71 LFKVILNTKSISTELTITNTDNKPFSFS 98 (223)
Q Consensus 71 ~~~y~L~~~~L~i~~~v~N~~~~~~p~~ 98 (223)
..+|++-+.+|+++++|+|.|+++...+
T Consensus 255 ~A~Y~vpgR~l~~~l~VtN~g~~pv~Lg 282 (381)
T PF04744_consen 255 DATYRVPGRTLTMTLTVTNNGDSPVRLG 282 (381)
T ss_dssp EEEEESSSSEEEEEEEEEEESSS-BEEE
T ss_pred ccEEecCCcEEEEEEEEEcCCCCceEee
Confidence 3468888999999999999999987654
No 39
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=69.21 E-value=6.8 Score=33.72 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=22.6
Q ss_pred EEEEeCCcEEEEEEEEeCCCCcEEEe
Q 027452 73 KVILNTKSISTELTITNTDNKPFSFS 98 (223)
Q Consensus 73 ~y~L~~~~L~i~~~v~N~~~~~~p~~ 98 (223)
+|.+-+.+|+++++|+|.|+++...+
T Consensus 276 ~Y~VPGR~l~~~~~VTN~g~~~vrlg 301 (399)
T TIGR03079 276 NYDVPGRALRVTMEITNNGDQVISIG 301 (399)
T ss_pred EEecCCcEEEEEEEEEcCCCCceEEE
Confidence 58888899999999999999987654
No 40
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=68.32 E-value=8.2 Score=25.80 Aligned_cols=20 Identities=25% Similarity=0.502 Sum_probs=14.3
Q ss_pred cEEEEEEEEeCCCCcEEEee
Q 027452 80 SISTELTITNTDNKPFSFSS 99 (223)
Q Consensus 80 ~L~i~~~v~N~~~~~~p~~~ 99 (223)
++.+.++++|.++++..+.+
T Consensus 1 ~v~~~l~v~N~s~~~v~l~f 20 (82)
T PF12690_consen 1 QVEFTLTVTNNSDEPVTLQF 20 (82)
T ss_dssp -EEEEEEEEE-SSS-EEEEE
T ss_pred CEEEEEEEEeCCCCeEEEEe
Confidence 47899999999999877754
No 41
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=63.74 E-value=45 Score=27.17 Aligned_cols=58 Identities=14% Similarity=0.276 Sum_probs=31.7
Q ss_pred eeCCcEEEeee----cCCCccEEEEEEecCccccccCCcceEEEEEEEEeCC--cEEEEEEEEeCCCCcEEE
Q 027452 32 RNMDWSILDSE----NVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTK--SISTELTITNTDNKPFSF 97 (223)
Q Consensus 32 r~~~w~v~~~~----~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~--~L~i~~~v~N~~~~~~p~ 97 (223)
.+..|++.... +..+..+++|++...+ .+.++.+|+|.++ .+.++++++|.++.+...
T Consensus 68 ~~~~f~~~~~~~~l~~~~~~~~vtf~~~~~~--------g~~i~k~ytf~~~~Y~~~~~i~~~n~~~~~~~~ 131 (270)
T PF14849_consen 68 NDLYFSVSQKSYTLKEGGDSQSVTFTAQLGN--------GLTITKTYTFKPDSYLVDLEISVTNLSDQPVSL 131 (270)
T ss_dssp S--B-B-S-SEEE--TT-SEEEEEEEEE-TT--------S-EEEEEEEEETT--EEEEEEEEE--SSS-EEE
T ss_pred ccceEEEcCCceeeccCCCceEEEEEEECCC--------CEEEEEEEEEcCCcEEEEEEEEEECCCCCcccc
Confidence 45668776531 1223566777776542 2689999999854 478888889988776655
No 42
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=60.44 E-value=3.6 Score=25.71 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=11.3
Q ss_pred cccccccEEcCCC
Q 027452 8 WDSGGVPHCFPQF 20 (223)
Q Consensus 8 ~~rgG~PvlfP~~ 20 (223)
+||.|||++.|-=
T Consensus 37 pI~dGIPvlL~~e 49 (60)
T COG2835 37 PIRDGIPVLLPDE 49 (60)
T ss_pred ecccCccccCchh
Confidence 7999999999853
No 43
>PF04442 CtaG_Cox11: Cytochrome c oxidase assembly protein CtaG/Cox11; InterPro: IPR007533 Cytochrome c oxidase assembly protein is essential for the assembly of functional cytochrome oxidase protein. In eukaryotes it is an integral protein of the mitochondrial inner membrane. Cox11 is essential for the insertion of Cu(I) ions to form the CuB site. This is essential for the stability of other structures in subunit I, for example haems a and a3, and the magnesium/manganese centre. Cox11 is probably only required in sub-stoichiometric amounts relative to the structural units []. The C-terminal region of the protein is known to form a dimer. Each monomer coordinates one Cu(I) ion via three conserved cysteine residues (111, 208 and 210) in Saccharomyces cerevisiae (P19516 from SWISSPROT). Met 224 is also thought to play a role in copper transfer or stabilising the copper site [].; GO: 0005507 copper ion binding; PDB: 1SO9_A 1SP0_A.
Probab=59.80 E-value=22 Score=26.88 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=27.9
Q ss_pred ccEEEEEEecCccccccCCcceEEEEE-EEEe-CCcEEEEEEEEeCCCCcEEE
Q 027452 47 NPVITLELKDGPYSRAMWDFSFQALFK-VILN-TKSISTELTITNTDNKPFSF 97 (223)
Q Consensus 47 ~~~v~l~l~~~~~~~~~~P~~f~l~~~-y~L~-~~~L~i~~~v~N~~~~~~p~ 97 (223)
+..|++++..+ ..++-||.|+-+++ .++. |..-.+.|+++|.+++++.-
T Consensus 35 ~R~i~V~F~a~--~~~~lpW~F~P~q~~v~V~pGe~~~~~y~a~N~s~~~i~g 85 (152)
T PF04442_consen 35 SRTITVRFDAN--VNPGLPWEFKPEQRSVKVHPGETALVFYEATNPSDKPITG 85 (152)
T ss_dssp S-EEEEEEEEE--E-TTS-EEEE-S-SEEEEETT--EEEEEEEEE-SSS-EE-
T ss_pred CcEEEEEEEee--cCCCCceEEEeeeeeEEeCCCCEEEEEEEEECCCCCcEEE
Confidence 44566666554 23567999986554 4445 67788899999999998754
No 44
>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0004866 endopeptidase inhibitor activity; PDB: 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 2PN5_A 3FRP_G 3HRZ_B ....
Probab=58.16 E-value=29 Score=23.39 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=24.5
Q ss_pred CcceEEEEEEEEe-CCcEEEEEEEEeCCCCcEEEee
Q 027452 65 DFSFQALFKVILN-TKSISTELTITNTDNKPFSFSS 99 (223)
Q Consensus 65 P~~f~l~~~y~L~-~~~L~i~~~v~N~~~~~~p~~~ 99 (223)
|+-.++.+=+.|. ++.+.+.+++.|..++++.+..
T Consensus 55 p~~i~~~lP~~l~~GD~~~i~v~v~N~~~~~~~v~V 90 (92)
T PF00207_consen 55 PFFIQLNLPRSLRRGDQIQIPVTVFNYTDKDQEVTV 90 (92)
T ss_dssp SEEEEEE--SEEETTSEEEEEEEEEE-SSS-EEEEE
T ss_pred eEEEEcCCCcEEecCCEEEEEEEEEeCCCCCEEEEE
Confidence 6667777777777 8889999999998888877654
No 45
>PRK01318 membrane protein insertase; Provisional
Probab=57.32 E-value=58 Score=29.81 Aligned_cols=43 Identities=16% Similarity=0.291 Sum_probs=30.1
Q ss_pred ccEEEEEEecCccccccCCcceEEEEEEEEeCCc--EEEEEEEEeCCCCcEEE
Q 027452 47 NPVITLELKDGPYSRAMWDFSFQALFKVILNTKS--ISTELTITNTDNKPFSF 97 (223)
Q Consensus 47 ~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~--L~i~~~v~N~~~~~~p~ 97 (223)
...|+|++... -...++.+|++++++ ++++++++|.++.++..
T Consensus 126 ~~~v~~~~~~~--------~g~~~~k~yt~~~~~Y~~~~~~~v~n~~~~~~~~ 170 (521)
T PRK01318 126 ELPVTLTWTNG--------NGLTFTKTYTLDRGDYMFTVEYSVNNNSGAPVNL 170 (521)
T ss_pred ceEEEEEEECC--------CCeEEEEEEEEcCCceEEEEEEEEEcCCCCceee
Confidence 44567766432 136789999997554 89999999987765444
No 46
>PTZ00128 cytochrome c oxidase assembly protein-like; Provisional
Probab=55.74 E-value=1.1e+02 Score=24.93 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=36.3
Q ss_pred ccEEEEEEecCccccccCCcceEEEEE-EEEe-CCcEEEEEEEEeCCCCcEEEeee
Q 027452 47 NPVITLELKDGPYSRAMWDFSFQALFK-VILN-TKSISTELTITNTDNKPFSFSSA 100 (223)
Q Consensus 47 ~~~v~l~l~~~~~~~~~~P~~f~l~~~-y~L~-~~~L~i~~~v~N~~~~~~p~~~g 100 (223)
+..|++++..+ ...+-||.|+-+++ .++. |..-.+.|+++|.+++++.-...
T Consensus 106 ~R~I~V~F~a~--v~~~lpW~F~P~q~~v~V~pGE~~lv~Y~a~N~sd~~i~G~A~ 159 (232)
T PTZ00128 106 KRLIKIRFLAD--TGSTMPWEFEPLQKEVEVLPGETALAFYRAKNRSDKPVIGVAT 159 (232)
T ss_pred ceEEEEEEecc--CCCCCCceEEeeeeEEEEcCCCeEEEEEEEECCCCCcEEEEEe
Confidence 45567776544 23467999986655 4444 67778889999999999865443
No 47
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=44.45 E-value=81 Score=22.66 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=25.9
Q ss_pred CCcEEEEEEEEeCCCCcEEEeeeccceEE
Q 027452 78 TKSISTELTITNTDNKPFSFSSALHTYFR 106 (223)
Q Consensus 78 ~~~L~i~~~v~N~~~~~~p~~~g~HpyF~ 106 (223)
+..-+++++|.|.+++++-|....++...
T Consensus 26 ~q~~~l~v~i~N~s~~~~tv~v~~~~A~T 54 (121)
T PF06030_consen 26 GQKQTLEVRITNNSDKEITVKVSANTATT 54 (121)
T ss_pred CCEEEEEEEEEeCCCCCEEEEEEEeeeEe
Confidence 66789999999999999999999888875
No 48
>PF06165 Glyco_transf_36: Glycosyltransferase family 36; InterPro: IPR010383 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyltransferase family 36 includes cellobiose phosphorylase (2.4.1.20 from EC), cellodextrin phosphorylase (2.4.1.49 from EC), and chitobiose phosphorylase. Many members of this family contain two copies of the domain represented in this entry.; PDB: 3QDE_A 3RRS_B 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A ....
Probab=42.71 E-value=1.2e+02 Score=21.29 Aligned_cols=38 Identities=24% Similarity=0.440 Sum_probs=22.1
Q ss_pred ceEEEEEEEEe-CCcEEE-EEEEEeCCCCcEEEeeeccceEE
Q 027452 67 SFQALFKVILN-TKSIST-ELTITNTDNKPFSFSSALHTYFR 106 (223)
Q Consensus 67 ~f~l~~~y~L~-~~~L~i-~~~v~N~~~~~~p~~~g~HpyF~ 106 (223)
.++.++++.+. ++.+++ .++++|+++++.-..+. +|+-
T Consensus 49 gi~~~~~v~V~~~~~vEi~~l~l~N~~~~~r~L~vt--sy~E 88 (110)
T PF06165_consen 49 GIETELTVFVPPDDPVEIRRLRLTNTSNRPRRLSVT--SYAE 88 (110)
T ss_dssp TEEEEEEEE--TTSSEEEEEEEEEE-SSS-EEEEEE--EEEE
T ss_pred CEEEEEEEEEcCCCCEEEEEEEEEECcCCcEEEEEE--EEEE
Confidence 55667777776 444554 58999999987665543 4543
No 49
>PLN02303 urease
Probab=41.54 E-value=29 Score=33.51 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=23.4
Q ss_pred EEEeCCcEEEEEEEEeCCCCcEEEeeeccceE
Q 027452 74 VILNTKSISTELTITNTDNKPFSFSSALHTYF 105 (223)
Q Consensus 74 y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF 105 (223)
+.|..+.=+++++|+|+||+| ++.|-|-.|
T Consensus 143 i~~n~gr~~~~l~v~n~gdrp--iqvgSH~hf 172 (837)
T PLN02303 143 IIINAGRKAVKLKVTNTGDRP--IQVGSHYHF 172 (837)
T ss_pred eeeCCCCCeEEEEEeeCCCCc--eEeccccch
Confidence 567766678999999999995 566777666
No 50
>PRK11827 hypothetical protein; Provisional
Probab=41.09 E-value=9.8 Score=23.88 Aligned_cols=13 Identities=15% Similarity=0.061 Sum_probs=10.9
Q ss_pred cccccccEEcCCC
Q 027452 8 WDSGGVPHCFPQF 20 (223)
Q Consensus 8 ~~rgG~PvlfP~~ 20 (223)
+||-||||+.+-=
T Consensus 37 PI~dgIPVlL~de 49 (60)
T PRK11827 37 PLRDGIPVLLETE 49 (60)
T ss_pred cccCCccccCHHH
Confidence 7999999998743
No 51
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=39.87 E-value=42 Score=20.18 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=14.9
Q ss_pred CCcEEEEEEEEeCCCCcE
Q 027452 78 TKSISTELTITNTDNKPF 95 (223)
Q Consensus 78 ~~~L~i~~~v~N~~~~~~ 95 (223)
++.++.+++++|.|..+.
T Consensus 11 Gd~v~Yti~v~N~g~~~a 28 (53)
T TIGR01451 11 GDTITYTITVTNNGNVPA 28 (53)
T ss_pred CCEEEEEEEEEECCCCce
Confidence 678888999999987654
No 52
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=39.66 E-value=41 Score=21.41 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=13.0
Q ss_pred ceEECCCCeEEEEEEEE
Q 027452 205 KVQLEPEQSWTAKQHLS 221 (223)
Q Consensus 205 ~~~L~pGe~~~~~~~i~ 221 (223)
++.|+|||+.+.++.|.
T Consensus 26 rv~l~pGes~~v~~~l~ 42 (71)
T PF14310_consen 26 RVSLAPGESKTVSFTLP 42 (71)
T ss_dssp EEEE-TT-EEEEEEEEE
T ss_pred EEEECCCCEEEEEEEEC
Confidence 58899999999998875
No 53
>COG3175 COX11 Cytochrome oxidase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=39.33 E-value=88 Score=24.36 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=33.7
Q ss_pred cEEEEEEecCccccccCCcceEEEEE-EEEe-CCcEEEEEEEEeCCCCcEEEe
Q 027452 48 PVITLELKDGPYSRAMWDFSFQALFK-VILN-TKSISTELTITNTDNKPFSFS 98 (223)
Q Consensus 48 ~~v~l~l~~~~~~~~~~P~~f~l~~~-y~L~-~~~L~i~~~v~N~~~~~~p~~ 98 (223)
..++.+++.+- ..+-||.|+-.++ .... ++.-.+-|+++|.+++++.-.
T Consensus 62 k~I~V~Fdanv--~~~lpW~F~p~q~~v~v~pGet~~~~y~a~N~sd~~itg~ 112 (195)
T COG3175 62 KTITVEFDANV--ANGLPWRFRPVQREVYVRPGETNLIFYEAENLSDKPITGQ 112 (195)
T ss_pred EEEEEEEcccc--CCCCceeeEecCceeEeccCceEEEEEEEecCCCCCceeE
Confidence 34666666553 3468999975443 2333 777888999999999987543
No 54
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=39.09 E-value=83 Score=21.60 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=21.8
Q ss_pred EEEEEEe---CCcEEEEEEEEeCCCCcEEEeeeccceEEEe
Q 027452 71 LFKVILN---TKSISTELTITNTDNKPFSFSSALHTYFRAS 108 (223)
Q Consensus 71 ~~~y~L~---~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~ 108 (223)
+++|+++ +++...+++|+|.+++++- +|.-.|.++
T Consensus 2 tv~~~v~~~W~~Gf~~~v~v~N~~~~~i~---~W~v~~~~~ 39 (101)
T PF00553_consen 2 TVTYTVTNSWGGGFQGEVTVTNNGSSPIN---GWTVTFTFP 39 (101)
T ss_dssp EEEEEEEEESSSEEEEEEEEEESSSSTEE---SEEEEEEES
T ss_pred EEEEEEecccCCCeEEEEEEEECCCCccC---CEEEEEEeC
Confidence 3445554 5677778888888887642 444445554
No 55
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=37.02 E-value=80 Score=22.27 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=17.2
Q ss_pred EEEeCCcEEEEEEEEeCCCCcEEEeee
Q 027452 74 VILNTKSISTELTITNTDNKPFSFSSA 100 (223)
Q Consensus 74 y~L~~~~L~i~~~v~N~~~~~~p~~~g 100 (223)
+.+.++.=..+++|+|.+++++.+..-
T Consensus 9 ii~~~~~~~~~i~v~N~~~~~~~vq~~ 35 (122)
T PF00345_consen 9 IIFNESQRSASITVTNNSDQPYLVQVW 35 (122)
T ss_dssp EEEETTSSEEEEEEEESSSSEEEEEEE
T ss_pred EEEeCCCCEEEEEEEcCCCCcEEEEEE
Confidence 344444447788888888877666443
No 56
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=35.55 E-value=52 Score=21.08 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=14.2
Q ss_pred CCcEEEEEEEEeCCCCc
Q 027452 78 TKSISTELTITNTDNKP 94 (223)
Q Consensus 78 ~~~L~i~~~v~N~~~~~ 94 (223)
++.++.+++++|.|+.+
T Consensus 40 Gd~v~ytitvtN~G~~~ 56 (76)
T PF01345_consen 40 GDTVTYTITVTNTGPAP 56 (76)
T ss_pred CCEEEEEEEEEECCCCe
Confidence 67888889999988775
No 57
>PF13629 T2SS-T3SS_pil_N: Pilus formation protein N terminal region
Probab=33.81 E-value=1.3e+02 Score=19.20 Aligned_cols=46 Identities=11% Similarity=0.294 Sum_probs=31.4
Q ss_pred eeecCCCcceEEeCCCCeEEEeCCCCCeEEEEeC--CCCcEEEeCCCC
Q 027452 141 RVTFPGFVDCIYLDAPSVVHLDNGLGDTITIRNT--NWSDAVLWNPHM 186 (223)
Q Consensus 141 ~~~~~~~~D~~y~~~~~~~~l~~~~~~~l~i~~~--~~~~~vvwtp~~ 186 (223)
.+.+.+.+.+++++.+.-+.+...+.+++.+... |...+.||...+
T Consensus 14 ~l~~~~~~~rV~v~dp~Iadv~~~~~~~v~i~gk~~G~T~l~vw~~~~ 61 (72)
T PF13629_consen 14 ILRLPGPITRVAVGDPEIADVTVLSPNEVYITGKKPGTTTLIVWDKDG 61 (72)
T ss_pred EEEcCCCcEEEEECCCCEEEEEEeCCCEEEEEEeCceeEEEEEECCCC
Confidence 4556678888998887655542234567777763 788899997543
No 58
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=32.73 E-value=48 Score=19.13 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=8.5
Q ss_pred EEEEeCCCCcEEE
Q 027452 85 LTITNTDNKPFSF 97 (223)
Q Consensus 85 ~~v~N~~~~~~p~ 97 (223)
++++|.|++++-.
T Consensus 2 F~~~N~g~~~L~I 14 (45)
T PF07610_consen 2 FEFTNTGDSPLVI 14 (45)
T ss_pred EEEEECCCCcEEE
Confidence 5677777776544
No 59
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=32.67 E-value=60 Score=22.68 Aligned_cols=26 Identities=23% Similarity=0.538 Sum_probs=18.8
Q ss_pred cEEEEEEEEeCCCCcEEEeeeccceEEEe
Q 027452 80 SISTELTITNTDNKPFSFSSALHTYFRAS 108 (223)
Q Consensus 80 ~L~i~~~v~N~~~~~~p~~~g~HpyF~~~ 108 (223)
-+.+.++|+|.++++..+... .|.+-
T Consensus 37 fv~v~v~v~N~~~~~~~~~~~---~f~l~ 62 (123)
T PF11611_consen 37 FVVVDVTVKNNGDEPLDFSPS---DFKLY 62 (123)
T ss_dssp EEEEEEEEEE-SSS-EEEEGG---GEEEE
T ss_pred EEEEEEEEEECCCCcEEeccc---ceEEE
Confidence 389999999999999887654 56553
No 60
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=32.53 E-value=1.1e+02 Score=22.60 Aligned_cols=32 Identities=19% Similarity=0.131 Sum_probs=24.7
Q ss_pred CCcceEEEEEEEEe-CCcEEEEEEEEeCCCCcE
Q 027452 64 WDFSFQALFKVILN-TKSISTELTITNTDNKPF 95 (223)
Q Consensus 64 ~P~~f~l~~~y~L~-~~~L~i~~~v~N~~~~~~ 95 (223)
+|-...+....++. ++++.+..+|+|.|+.+.
T Consensus 46 ~~~~~~~~~~~~l~~~~~~~v~g~V~N~g~~~i 78 (149)
T PF09624_consen 46 KKIELTLTSQKRLQYSESFYVDGTVTNTGKFTI 78 (149)
T ss_pred CCceEEEeeeeeeeeccEEEEEEEEEECCCCEe
Confidence 45556666666666 889999999999998764
No 61
>PF00942 CBM_3: Cellulose binding domain; InterPro: IPR001956 This domain is involved in cellulose binding [] and is found associated with a wide range of bacterial glycosyl hydrolases. The structure for this domain is known []; it forms a beta sandwich.; GO: 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2L8A_A 4TF4_B 3TF4_B 1JS4_A 1TF4_B 1NBC_A 2YLK_A 3ZQX_A 2XFG_B 2XBT_A ....
Probab=32.17 E-value=56 Score=21.73 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=22.6
Q ss_pred CCcEEEEEEEEeCCCCcEEE-eeeccceEEEee
Q 027452 78 TKSISTELTITNTDNKPFSF-SSALHTYFRASV 109 (223)
Q Consensus 78 ~~~L~i~~~v~N~~~~~~p~-~~g~HpyF~~~~ 109 (223)
.+.+.+.+.|+|++..+... .+-.+=||...+
T Consensus 12 ~n~i~~~~~i~Ntg~~~i~Ls~l~iRYyft~d~ 44 (86)
T PF00942_consen 12 TNSIEPKFKIKNTGWPAIDLSDLKIRYYFTIDE 44 (86)
T ss_dssp ESEEEEEEEEEETSSS-EEGGGEEEEEEEE-SS
T ss_pred CCEEEEEEEEEECCCCCEEcCCEEEEEEEecCC
Confidence 46788888888877777666 577777877764
No 62
>PF03351 DOMON: DOMON domain; InterPro: IPR005018 The DOMON domain is an 110-125 residue long domain which has been identified in the physiologically important enzyme dopamine beta-monooxygenase and in several other secreted and transmembrane proteins from both plants and animals. It has been named after DOpamine beta-MOnooxygenase N-terminal domain. The DOMON domain can be found in one to four copies and in association with other domains, such as the Cu-ascorbate dependent monooxygenase domain, the epidermal growth factor domain, the trypsin inhibitor-like domain (TIL), the SEA domain and the Reelin domain. The architectures of the DOMON domain proteins strongly suggest a function in extracellular adhesion []. The sequence conservation is predominantly centred around patches of hydrophobic residues. The secondary structure prediction of the DOMON domain points to an all-beta-strand fold with seven or eight core strands supported by a buried core of conserved hydrophobic residues. There is a chraracteristic motif with two small positions (Gly or Ser) corresponding to a conserved turn immediately C-terminal to strand three. It has been proposed that the DOMON domain might form a beta-sandwich structure, with the strands distributed into two beta sheets as is seen in many extracellular adhesion domains such as the immunoglobulin, fibronectin type III, cadherin and PKD domains [].
Probab=31.43 E-value=1.5e+02 Score=20.59 Aligned_cols=35 Identities=9% Similarity=0.048 Sum_probs=22.8
Q ss_pred EEEEEEEEeCCcEEEEEEEEeCCCCcEEEeeeccc
Q 027452 69 QALFKVILNTKSISTELTITNTDNKPFSFSSALHT 103 (223)
Q Consensus 69 ~l~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~Hp 103 (223)
.+.+++++..+.-+|.+++++.......+++|+-+
T Consensus 4 ~~~l~w~~~~~~~~i~~~l~~~~~~~~w~aiGfs~ 38 (124)
T PF03351_consen 4 NFSLSWTVDGDNNTIEFELTGPANTNGWVAIGFSD 38 (124)
T ss_pred eEEEEEEEECCCCEEEEEEEeccCCCCEEEEEEcc
Confidence 34667777755556666666444446788888777
No 63
>PF06586 TraK: TraK protein; InterPro: IPR010563 This family consists of several TraK proteins from Escherichia coli, Salmonella typhi and Salmonella typhimurium. TraK is known to be essential for pilus assembly but its exact role in this process is unknown [].
Probab=30.87 E-value=1.3e+02 Score=24.00 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=25.1
Q ss_pred CCcceEEEEEEEEeCCcEEEE-EEEEeCCCCcEEE
Q 027452 64 WDFSFQALFKVILNTKSISTE-LTITNTDNKPFSF 97 (223)
Q Consensus 64 ~P~~f~l~~~y~L~~~~L~i~-~~v~N~~~~~~p~ 97 (223)
-+..++++......++.|++. |+++|.+++++-+
T Consensus 170 ~~~~l~~~~~~~~~G~~l~~~~y~v~N~~~~~v~l 204 (234)
T PF06586_consen 170 LPKGLRLTPVQRYEGSGLRGEVYRVTNTSDQPVEL 204 (234)
T ss_pred ccccceEeeeeEEecCceEEEEEEEEeCCCCCEEe
Confidence 345667777777778887765 7899999887655
No 64
>PF14742 GDE_N_bis: N-terminal domain of (some) glycogen debranching enzymes
Probab=29.35 E-value=2.7e+02 Score=21.59 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=28.5
Q ss_pred CCcceEEEEEEEEeCCcEEEEEEEEeCCCCcEEEeeec
Q 027452 64 WDFSFQALFKVILNTKSISTELTITNTDNKPFSFSSAL 101 (223)
Q Consensus 64 ~P~~f~l~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~ 101 (223)
-.....++-+-.|.++ |.-+++++|.+.+|..+.+.+
T Consensus 77 ~~~~l~l~R~r~v~~~-~~E~l~l~N~~~~pv~~~l~l 113 (194)
T PF14742_consen 77 PDGTLHLRRERFVGGG-LYERLTLTNYSPEPVELTLSL 113 (194)
T ss_pred CCCeEEEEEEEEECCC-CEEEEEEEeCCCCCEEEEEEE
Confidence 4466677777777666 999999999999987776544
No 65
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=27.73 E-value=70 Score=20.61 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=12.0
Q ss_pred eEECCCCeEEEEEEEEe
Q 027452 206 VQLEPEQSWTAKQHLSI 222 (223)
Q Consensus 206 ~~L~pGe~~~~~~~i~v 222 (223)
..|+||++.+..+.+++
T Consensus 44 ~~l~pG~s~~~~~~V~v 60 (78)
T PF10633_consen 44 PSLPPGESVTVTFTVTV 60 (78)
T ss_dssp --B-TTSEEEEEEEEEE
T ss_pred ccCCCCCEEEEEEEEEC
Confidence 48899999998888875
No 66
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=26.27 E-value=1.1e+02 Score=19.88 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=15.4
Q ss_pred EEEEEEEEeCCcEEEEEEEEeC
Q 027452 69 QALFKVILNTKSISTELTITNT 90 (223)
Q Consensus 69 ~l~~~y~L~~~~L~i~~~v~N~ 90 (223)
.+.+++++.++.+++.+.+.|.
T Consensus 26 ~v~v~l~~~~~~l~v~~~~~~~ 47 (85)
T PF02120_consen 26 SVEVKLRLQGGNLSVQFTAENP 47 (85)
T ss_dssp -EEEEEEEETTEEEEEEE--SS
T ss_pred cEEEEEEEeCCEEEEEEEECCH
Confidence 4666778888899999998764
No 67
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=25.55 E-value=1.9e+02 Score=20.01 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=22.7
Q ss_pred EEEEEEEE--eCCcEEEEEEEEeCCCCcEEEeeeccceEEEe
Q 027452 69 QALFKVIL--NTKSISTELTITNTDNKPFSFSSALHTYFRAS 108 (223)
Q Consensus 69 ~l~~~y~L--~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~ 108 (223)
++.+..+- .++.+.+.++..|.++.++- +++.-++++
T Consensus 12 ~I~~~~~~~~~~~~~~i~~~f~N~s~~~it---~f~~q~avp 50 (115)
T PF02883_consen 12 QIGFKSEKSPNPNQGRIKLTFGNKSSQPIT---NFSFQAAVP 50 (115)
T ss_dssp EEEEEEEECCETTEEEEEEEEEE-SSS-BE---EEEEEEEEB
T ss_pred EEEEEEEecCCCCEEEEEEEEEECCCCCcc---eEEEEEEec
Confidence 34444444 67889999999998777653 344445555
No 68
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=24.56 E-value=1.6e+02 Score=20.34 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=17.2
Q ss_pred CCcEEEEEEEEeCCCCcEEEeeecc
Q 027452 78 TKSISTELTITNTDNKPFSFSSALH 102 (223)
Q Consensus 78 ~~~L~i~~~v~N~~~~~~p~~~g~H 102 (223)
++.-+.+++++|.|+++.-|.+..=
T Consensus 7 ~~~~~~~itl~N~~~~~~ty~~~~~ 31 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDKPVTYTLSHV 31 (112)
T ss_dssp -SEEEEEEEEEE-SSS-EEEEEEEE
T ss_pred CCceEEEEEEEECCCCCEEEEEeeE
Confidence 4557888999999999888776654
No 69
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=24.15 E-value=2.1e+02 Score=19.29 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=14.1
Q ss_pred CCcEEEEEEEEeCCCCcE
Q 027452 78 TKSISTELTITNTDNKPF 95 (223)
Q Consensus 78 ~~~L~i~~~v~N~~~~~~ 95 (223)
++.+.+.+...|.++.++
T Consensus 17 ~~~~~i~~~~~N~s~~~i 34 (104)
T smart00809 17 PGLIRITLTFTNKSPSPI 34 (104)
T ss_pred CCeEEEEEEEEeCCCCee
Confidence 567889999999887653
No 70
>PF09299 Mu-transpos_C: Mu transposase, C-terminal; InterPro: IPR015378 This domain is found in various prokaryotic integrases and transposases. It adopts a beta-barrel structure with Greek-key topology []. ; PDB: 1BCO_A 1BCM_B.
Probab=24.01 E-value=1.2e+02 Score=18.66 Aligned_cols=26 Identities=19% Similarity=0.613 Sum_probs=18.0
Q ss_pred CCCeEEEEeC--CCCcEEEeCCCCCCCCCCCceEEe
Q 027452 165 LGDTITIRNT--NWSDAVLWNPHMQMEACYKDFVCV 198 (223)
Q Consensus 165 ~~~~l~i~~~--~~~~~vvwtp~~~~~~~~~~~vCi 198 (223)
.|.++.|..+ +...+.||.+. . |||.
T Consensus 34 ~g~~V~vryDp~dl~~i~V~~~~-------g-~ic~ 61 (62)
T PF09299_consen 34 IGQKVRVRYDPDDLSRIYVYDED-------G-FICE 61 (62)
T ss_dssp S-SEEEEEE-GGGTTEEEEEETT-------S-EEEE
T ss_pred cCCEEEEEECcccCCEEEEEECC-------c-EEEE
Confidence 4667777775 67889999864 3 9984
No 71
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=23.80 E-value=32 Score=22.77 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=15.9
Q ss_pred ceEEeccCceeceEECCCCeEEE
Q 027452 194 DFVCVENAKIGKVQLEPEQSWTA 216 (223)
Q Consensus 194 ~~vCiEP~~~~~~~L~pGe~~~~ 216 (223)
-|-|+++.+ ..+.|.|||+|++
T Consensus 56 yF~tLp~nT-~lmvL~~gq~W~g 77 (77)
T cd06535 56 YFPTLPDNT-ELVLLTPGQSWQG 77 (77)
T ss_pred HHhcCCCCc-EEEEEcCCCccCC
Confidence 466777765 2388999999863
No 72
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=23.25 E-value=61 Score=31.19 Aligned_cols=32 Identities=19% Similarity=0.506 Sum_probs=20.8
Q ss_pred ccCCcceEEEEE-EE-----Ee------CCcEEEEEEEEeCCCC
Q 027452 62 AMWDFSFQALFK-VI-----LN------TKSISTELTITNTDNK 93 (223)
Q Consensus 62 ~~~P~~f~l~~~-y~-----L~------~~~L~i~~~v~N~~~~ 93 (223)
..|||-|-|.+| |+ ++ ++.++++++|+|+|+.
T Consensus 638 plypFG~GLSYT~F~ys~l~v~~~~~~~~~~i~v~v~V~NtG~~ 681 (765)
T PRK15098 638 PLYPFGYGLSYTTFTVSDVKLSSPTMKRDGKVTASVTVTNTGKR 681 (765)
T ss_pred ccccccCCCCCccEEeeccEeccccccCCCeEEEEEEEEECCCC
Confidence 568988755543 22 22 4568888888888863
No 73
>TIGR03067 Planc_TIGR03067 Planctomycetes uncharacterized domain TIGR03067. This domain occurs in several species, mostly from the Planctomycetes division of the bacteria. It is expanded into a paralogous family of at least twenty-five members in Gemmata obscuriglobus UQM 2246. This family appears related to TIGR03066, which also is expanded into a large paralogous family in Gemmata obscuriglobus.
Probab=23.00 E-value=1.7e+02 Score=20.42 Aligned_cols=17 Identities=6% Similarity=-0.099 Sum_probs=8.9
Q ss_pred EEEEEEeCCcEEEEEEE
Q 027452 71 LFKVILNTKSISTELTI 87 (223)
Q Consensus 71 ~~~y~L~~~~L~i~~~v 87 (223)
.-.|+|++++|++-+..
T Consensus 80 ~gIY~l~gd~L~vC~~~ 96 (107)
T TIGR03067 80 KGIYKLDGDTLTVCFSG 96 (107)
T ss_pred EEEEEEcCCEEEEEECC
Confidence 33455555555555544
No 74
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=22.96 E-value=2.4e+02 Score=18.85 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=19.2
Q ss_pred CCcEEEEEEEEeCCCCcEEEeee
Q 027452 78 TKSISTELTITNTDNKPFSFSSA 100 (223)
Q Consensus 78 ~~~L~i~~~v~N~~~~~~p~~~g 100 (223)
+...+..++++|.|..+..|.+-
T Consensus 19 g~~~~~~v~l~N~s~~p~~f~v~ 41 (102)
T PF14874_consen 19 GQTYSRTVTLTNTSSIPARFRVR 41 (102)
T ss_pred CCEEEEEEEEEECCCCCEEEEEE
Confidence 67788899999999998888754
No 75
>PF06205 GT36_AF: Glycosyltransferase 36 associated family ; InterPro: IPR010403 This domain is found in the NvdB protein (P20471 from SWISSPROT), which is involved in the production of beta-(1-->2)-glucan.; PDB: 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A ....
Probab=21.53 E-value=1.4e+02 Score=20.15 Aligned_cols=16 Identities=31% Similarity=0.302 Sum_probs=11.1
Q ss_pred eEECCCCeEEEEEEEE
Q 027452 206 VQLEPEQSWTAKQHLS 221 (223)
Q Consensus 206 ~~L~pGe~~~~~~~i~ 221 (223)
+.|+|||+.+..+.+-
T Consensus 68 v~L~PGe~~~v~f~lG 83 (90)
T PF06205_consen 68 VTLEPGEEKEVVFLLG 83 (90)
T ss_dssp EEE-TT-EEEEEEEEE
T ss_pred EEECCCCEEEEEEEEE
Confidence 8899999998877653
No 76
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=21.41 E-value=3.4e+02 Score=20.01 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=13.7
Q ss_pred EEEEEEEeCCCCcEEEeeecc
Q 027452 82 STELTITNTDNKPFSFSSALH 102 (223)
Q Consensus 82 ~i~~~v~N~~~~~~p~~~g~H 102 (223)
+++++++|.++.+-.|.+..|
T Consensus 70 ~Vtl~vtN~d~~~H~f~i~~~ 90 (135)
T TIGR03096 70 PVKVTVENKSPISEGFSIDAY 90 (135)
T ss_pred EEEEEEEeCCCCccceEECCC
Confidence 667777788876655555443
No 77
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=21.22 E-value=2.3e+02 Score=20.11 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=18.2
Q ss_pred CCcEEEEEEEEeCCCCcEEEeee
Q 027452 78 TKSISTELTITNTDNKPFSFSSA 100 (223)
Q Consensus 78 ~~~L~i~~~v~N~~~~~~p~~~g 100 (223)
+..+.|++.-+|-.++.|++..|
T Consensus 16 ~g~~~vsL~G~~g~s~~~~i~~g 38 (113)
T cd01759 16 TGTILVSLYGNKGNTRQYEIFKG 38 (113)
T ss_pred CceEEEEEEcCCCCccceEEEee
Confidence 34788888888777888998866
No 78
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.09 E-value=86 Score=24.33 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=16.8
Q ss_pred EEEeCCcEEEEEEEEeCCCCc
Q 027452 74 VILNTKSISTELTITNTDNKP 94 (223)
Q Consensus 74 y~L~~~~L~i~~~v~N~~~~~ 94 (223)
|-+.++.+++++++.|.|+.+
T Consensus 33 ~~v~g~~v~V~~~iyN~G~~~ 53 (181)
T PF05753_consen 33 YLVEGEDVTVTYTIYNVGSSA 53 (181)
T ss_pred cccCCcEEEEEEEEEECCCCe
Confidence 344578899999999999875
No 79
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=21.04 E-value=2.1e+02 Score=21.44 Aligned_cols=11 Identities=36% Similarity=0.477 Sum_probs=7.6
Q ss_pred eCCcEEEEEEE
Q 027452 77 NTKSISTELTI 87 (223)
Q Consensus 77 ~~~~L~i~~~v 87 (223)
.+++|.+.|+.
T Consensus 65 ~G~GL~v~Y~F 75 (145)
T PF14796_consen 65 NGKGLSVEYRF 75 (145)
T ss_pred CCCceeEEEEE
Confidence 46777777766
No 80
>PF10065 DUF2303: Uncharacterized conserved protein (DUF2303); InterPro: IPR019276 This entry is represented by Bacteriiophage VT2phi_272, P20. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.83 E-value=1.4e+02 Score=24.81 Aligned_cols=25 Identities=8% Similarity=0.135 Sum_probs=19.5
Q ss_pred CcceEEEEEEEEeCCcEEEEEEEEe
Q 027452 65 DFSFQALFKVILNTKSISTELTITN 89 (223)
Q Consensus 65 P~~f~l~~~y~L~~~~L~i~~~v~N 89 (223)
++.+.++++|+..+++|.+.|++.+
T Consensus 221 ~~~i~~Rlr~r~~~g~l~l~l~l~~ 245 (276)
T PF10065_consen 221 EYRITARLRYRTRGGKLVLWLRLVR 245 (276)
T ss_pred eEEEEEEEEEEecCCcEEEEEEEcC
Confidence 5677888888888888888888754
No 81
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=20.03 E-value=1.2e+02 Score=20.06 Aligned_cols=17 Identities=12% Similarity=0.309 Sum_probs=13.5
Q ss_pred CCcEEEEEEEEeCCCCc
Q 027452 78 TKSISTELTITNTDNKP 94 (223)
Q Consensus 78 ~~~L~i~~~v~N~~~~~ 94 (223)
++.+++.++|+|.|...
T Consensus 18 g~~~~i~~~V~N~G~~~ 34 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTAD 34 (101)
T ss_dssp TSEEEEEEEEEE-SSS-
T ss_pred CCEEEEEEEEEECCCCC
Confidence 77899999999999876
No 82
>TIGR03066 Gem_osc_para_1 Gemmata obscuriglobus paralogous family TIGR03066. This model represents an uncharacterized paralogous family in Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. This family shows sequence similarity to TIGR03067, which is also found in Gemmata obscuriglobus as well as in a few other species.
Probab=20.01 E-value=3e+02 Score=19.58 Aligned_cols=19 Identities=16% Similarity=0.085 Sum_probs=11.8
Q ss_pred eEEEEEEEEeCCcEEEEEE
Q 027452 68 FQALFKVILNTKSISTELT 86 (223)
Q Consensus 68 f~l~~~y~L~~~~L~i~~~ 86 (223)
..+.=+|+|+++.|++++.
T Consensus 57 ~~~~Gty~L~G~kLtL~~~ 75 (111)
T TIGR03066 57 VKADGTYKLDGNKLTLTLK 75 (111)
T ss_pred eccCceEEEECCEEEEEEc
Confidence 3445577888776666544
Done!