BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027454
         (223 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YCD|A Chain A, Crystal Structure Of Yeast Fsh1/yhr049w, A Member Of The
           Serine Hydrolase Family
 pdb|1YCD|B Chain B, Crystal Structure Of Yeast Fsh1/yhr049w, A Member Of The
           Serine Hydrolase Family
          Length = 243

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 23/153 (15%)

Query: 8   VRKPRVLCLHGFRTSGEI-------LKKQIGKWPQQ--------VLDNLDLVFPNGAHPA 52
           V+ P++L LHGF  +G++       ++K + K   Q        +L+  DL F       
Sbjct: 3   VQIPKLLFLHGFLQNGKVFSEKSSGIRKLLKKANVQCDYIDAPVLLEKKDLPFEMDDEKW 62

Query: 53  QGKSDVEGIFDPPYYEWFQFNKEFTEYTNFDKCLAYIEDYMIKHGPFDGLLGFSQGAILS 112
           Q   D +         WF ++ E +   +  + L  + D++  +GP+DG++G SQGA LS
Sbjct: 63  QATLDAD-----VNRAWF-YHSEISHELDISEGLKSVVDHIKANGPYDGIVGLSQGAALS 116

Query: 113 AGLAGMQAKGVALTKVPKIKFLIIVGGAMFKAP 145
           + +    ++ V     P+ K  +++ G  F  P
Sbjct: 117 SIITNKISELVP--DHPQFKVSVVISGYSFTEP 147


>pdb|4ERR|A Chain A, 1.55 Angstrom Crystal Structure Of The Four Helical
          Bundle Membrane Localization Domain (4hbm) Of The
          Vibrio Vulnificus Martx Effector Domain Duf5
 pdb|4ERR|B Chain B, 1.55 Angstrom Crystal Structure Of The Four Helical
          Bundle Membrane Localization Domain (4hbm) Of The
          Vibrio Vulnificus Martx Effector Domain Duf5
          Length = 90

 Score = 28.9 bits (63), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 13/68 (19%)

Query: 12 RVLCLHGFRTSGEILKKQIGKWPQQVLDNLDLVFPNGAHPAQGKSDVEGIFDPPYYEWFQ 71
          ++  +   +   ++  K IG   Q +LD LDLV     H A+G+  +           F+
Sbjct: 3  QIFTVQELKERAKVFAKPIGASYQGILDQLDLV-----HQAKGRDQIAA--------SFE 49

Query: 72 FNKEFTEY 79
           NK+  +Y
Sbjct: 50 LNKKINDY 57


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.142    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,509,071
Number of Sequences: 62578
Number of extensions: 333728
Number of successful extensions: 699
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 697
Number of HSP's gapped (non-prelim): 7
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)