Query 027455
Match_columns 223
No_of_seqs 177 out of 1208
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 10:10:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027455.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027455hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2881 Predicted membrane pro 100.0 1.2E-59 2.6E-64 412.5 14.1 222 1-222 62-289 (294)
2 COG2119 Predicted membrane pro 100.0 3.2E-50 7E-55 338.1 19.8 180 5-222 1-183 (190)
3 PF01169 UPF0016: Uncharacteri 99.9 4.7E-25 1E-29 163.4 7.1 76 8-83 1-78 (78)
4 PF01169 UPF0016: Uncharacteri 99.9 2E-24 4.4E-29 160.0 7.0 74 144-217 1-78 (78)
5 COG2119 Predicted membrane pro 99.9 6.3E-22 1.4E-26 167.1 10.5 87 5-91 99-186 (190)
6 KOG2881 Predicted membrane pro 99.7 2.5E-18 5.4E-23 151.9 4.6 87 5-91 206-292 (294)
7 COG4280 Predicted membrane pro 97.9 0.00011 2.5E-09 63.6 10.8 155 35-219 31-194 (236)
8 TIGR02840 spore_YtaF putative 97.8 0.0006 1.3E-08 58.9 12.8 49 46-94 38-86 (206)
9 PRK11469 hypothetical protein; 97.7 0.00051 1.1E-08 58.7 10.9 45 48-93 47-91 (188)
10 PF01810 LysE: LysE type trans 97.7 0.002 4.4E-08 53.5 14.4 67 26-92 12-83 (191)
11 COG1971 Predicted membrane pro 97.4 0.0025 5.5E-08 54.7 11.6 44 50-93 45-91 (190)
12 PF03596 Cad: Cadmium resistan 97.1 0.004 8.7E-08 53.5 9.2 53 37-90 25-77 (191)
13 PRK10229 threonine efflux syst 96.0 0.51 1.1E-05 39.9 15.2 70 20-90 19-93 (206)
14 TIGR00949 2A76 The Resistance 96.0 0.18 3.9E-06 41.7 12.2 64 27-90 8-76 (185)
15 COG0730 Predicted permeases [G 96.0 0.37 8.1E-06 42.1 14.7 54 38-91 69-122 (258)
16 PF01914 MarC: MarC family int 95.7 0.73 1.6E-05 39.7 14.8 135 40-210 39-179 (203)
17 COG4300 CadD Predicted permeas 95.5 0.2 4.3E-06 43.1 10.3 74 16-90 12-88 (205)
18 PF03741 TerC: Integral membra 95.4 1 2.2E-05 38.3 14.7 157 21-215 12-177 (183)
19 PRK10621 hypothetical protein; 95.3 1.4 3E-05 39.0 15.8 51 39-89 74-124 (266)
20 PF01925 TauE: Sulfite exporte 95.3 0.48 1E-05 40.3 12.3 48 43-90 64-111 (240)
21 PRK10995 inner membrane protei 95.1 0.89 1.9E-05 39.5 13.8 44 48-91 51-96 (221)
22 PF03239 FTR1: Iron permease F 94.3 2.7 5.9E-05 38.2 15.2 154 37-210 35-201 (306)
23 TIGR00145 FTR1 family protein. 94.1 3.9 8.4E-05 37.2 15.7 54 37-90 38-98 (283)
24 TIGR03718 R_switched_Alx integ 93.7 2.9 6.2E-05 38.5 14.1 77 10-89 63-147 (302)
25 PRK10520 rhtB homoserine/homos 93.6 3.9 8.4E-05 34.5 14.1 69 22-90 21-94 (205)
26 TIGR03717 R_switched_YjbE inte 93.3 4.2 9.1E-05 34.4 13.6 65 21-90 14-82 (176)
27 PRK10958 leucine export protei 93.0 5.3 0.00011 34.2 16.2 66 26-91 29-99 (212)
28 TIGR03716 R_switched_YkoY inte 92.5 1.9 4.2E-05 37.7 10.8 143 21-208 9-159 (215)
29 COG1280 RhtB Putative threonin 91.8 7.6 0.00017 33.2 15.5 66 24-90 23-94 (208)
30 TIGR00779 cad cadmium resistan 91.8 0.67 1.5E-05 40.0 7.0 55 34-89 21-75 (193)
31 PRK09304 arginine exporter pro 91.7 7.5 0.00016 33.0 16.6 65 26-90 24-91 (207)
32 PRK10323 cysteine/O-acetylseri 90.2 10 0.00022 31.9 16.0 70 21-90 20-94 (195)
33 TIGR00948 2a75 L-lysine export 90.2 8.2 0.00018 31.7 11.9 64 28-91 12-78 (177)
34 PRK10019 nickel/cobalt efflux 89.1 18 0.00038 33.0 15.7 75 18-92 29-111 (279)
35 TIGR00427 membrane protein, Ma 85.3 10 0.00023 32.6 9.9 51 39-90 42-94 (201)
36 COG4280 Predicted membrane pro 83.8 3 6.5E-05 36.6 5.9 58 160-218 18-79 (236)
37 PRK11111 hypothetical protein; 83.3 17 0.00036 31.7 10.4 50 40-90 46-97 (214)
38 PF01810 LysE: LysE type trans 82.7 6.4 0.00014 32.4 7.3 48 43-90 141-191 (191)
39 PRK10739 putative antibiotic t 81.1 35 0.00075 29.4 13.7 50 40-90 40-91 (197)
40 PF02659 DUF204: Domain of unk 78.9 3.3 7.1E-05 29.0 3.7 35 48-83 33-67 (67)
41 PRK00293 dipZ thiol:disulfide 77.6 63 0.0014 32.1 13.5 48 40-87 215-262 (571)
42 TIGR02840 spore_YtaF putative 77.1 3.7 7.9E-05 35.4 4.2 46 177-222 33-80 (206)
43 COG0861 TerC Membrane protein 75.0 63 0.0014 29.0 13.5 179 10-216 18-206 (254)
44 COG0730 Predicted permeases [G 69.4 12 0.00026 32.5 5.7 45 47-91 211-255 (258)
45 COG2095 MarC Multiple antibiot 69.4 53 0.0011 28.5 9.5 131 40-210 43-176 (203)
46 COG1971 Predicted membrane pro 69.4 11 0.00025 32.5 5.3 41 50-91 148-188 (190)
47 PF01925 TauE: Sulfite exporte 66.2 18 0.00038 30.7 5.9 46 41-86 195-240 (240)
48 PRK10621 hypothetical protein; 64.3 16 0.00034 32.2 5.5 47 45-91 209-255 (266)
49 COG2215 ABC-type uncharacteriz 64.1 1.2E+02 0.0026 28.1 11.2 75 18-92 70-154 (303)
50 PRK11469 hypothetical protein; 62.6 18 0.0004 30.8 5.3 41 50-91 146-186 (188)
51 PF11139 DUF2910: Protein of u 61.3 1E+02 0.0022 26.2 15.9 52 39-90 33-90 (214)
52 COG2814 AraJ Arabinose efflux 60.1 1.6E+02 0.0035 28.1 13.2 51 27-77 125-175 (394)
53 PF13386 DsbD_2: Cytochrome C 57.8 1.1E+02 0.0024 25.5 13.6 49 40-88 38-90 (199)
54 PF07690 MFS_1: Major Facilita 56.5 1.3E+02 0.0027 25.7 10.1 37 48-84 130-166 (352)
55 PF07332 DUF1469: Protein of u 54.6 79 0.0017 24.2 7.3 51 40-90 41-93 (121)
56 PF08285 DPM3: Dolichol-phosph 54.4 18 0.00039 27.5 3.5 41 69-109 35-79 (91)
57 PF03596 Cad: Cadmium resistan 53.2 43 0.00092 28.8 6.0 50 172-222 24-75 (191)
58 TIGR00779 cad cadmium resistan 53.1 47 0.001 28.8 6.2 52 170-222 21-74 (193)
59 PRK00259 intracellular septati 48.4 55 0.0012 27.8 5.9 47 41-89 22-68 (179)
60 PF04474 DUF554: Protein of un 46.6 2.1E+02 0.0045 25.3 16.5 156 49-219 8-200 (226)
61 PF07857 DUF1632: CEO family ( 45.4 1E+02 0.0022 27.7 7.4 46 42-87 79-132 (254)
62 TIGR00997 ispZ intracellular s 45.1 67 0.0015 27.3 5.9 48 41-90 22-69 (178)
63 PRK10019 nickel/cobalt efflux 45.0 1.3E+02 0.0028 27.5 8.0 71 14-91 199-274 (279)
64 PRK09304 arginine exporter pro 44.9 52 0.0011 27.8 5.3 43 49-91 157-203 (207)
65 PF03741 TerC: Integral membra 44.4 64 0.0014 27.3 5.7 58 27-89 126-183 (183)
66 PF13347 MFS_2: MFS/sugar tran 44.2 2.5E+02 0.0055 25.6 10.6 28 183-210 268-295 (428)
67 TIGR02230 ATPase_gene1 F0F1-AT 43.6 41 0.00088 26.1 4.0 35 183-218 51-85 (100)
68 TIGR00704 NaPi_cotrn_rel Na/Pi 42.4 2.8E+02 0.006 25.5 14.0 29 174-202 209-237 (307)
69 TIGR00997 ispZ intracellular s 42.2 72 0.0016 27.2 5.7 47 177-223 22-68 (178)
70 PF02659 DUF204: Domain of unk 41.9 58 0.0013 22.5 4.3 34 183-217 32-67 (67)
71 PF06166 DUF979: Protein of un 41.0 2.6E+02 0.0057 26.0 9.4 26 179-204 122-147 (308)
72 PF03739 YjgP_YjgQ: Predicted 40.7 1E+02 0.0022 27.7 6.8 63 26-88 287-353 (354)
73 PRK10323 cysteine/O-acetylseri 40.7 81 0.0018 26.4 5.8 32 57-88 162-195 (195)
74 TIGR00900 2A0121 H+ Antiporter 40.2 2.4E+02 0.0051 24.1 14.3 33 53-85 142-174 (365)
75 TIGR00949 2A76 The Resistance 36.7 1.7E+02 0.0038 23.7 7.1 17 69-85 168-184 (185)
76 PRK00259 intracellular septati 36.6 1E+02 0.0022 26.2 5.7 46 177-222 22-67 (179)
77 PF11368 DUF3169: Protein of u 36.1 2.9E+02 0.0064 24.0 10.3 13 186-198 140-152 (248)
78 TIGR03717 R_switched_YjbE inte 35.6 1.3E+02 0.0029 25.2 6.3 53 34-89 123-175 (176)
79 PRK15071 lipopolysaccharide AB 35.2 3E+02 0.0065 24.9 9.1 64 26-89 286-354 (356)
80 PF01914 MarC: MarC family int 34.6 1.4E+02 0.003 25.6 6.3 71 21-91 123-199 (203)
81 TIGR03716 R_switched_YkoY inte 34.6 1.2E+02 0.0026 26.6 6.0 57 32-91 119-175 (215)
82 TIGR03718 R_switched_Alx integ 34.5 2E+02 0.0044 26.5 7.7 59 29-90 212-270 (302)
83 KOG1397 Ca2+/H+ antiporter VCX 34.3 1.7E+02 0.0038 28.3 7.4 30 174-203 357-387 (441)
84 PRK00944 hypothetical protein; 34.2 1.1E+02 0.0024 26.5 5.5 52 40-92 124-175 (195)
85 PRK01637 hypothetical protein; 33.5 72 0.0016 28.5 4.6 28 38-65 202-229 (286)
86 KOG2325 Predicted transporter/ 33.5 3E+02 0.0066 27.1 9.2 41 142-182 266-307 (488)
87 COG1280 RhtB Putative threonin 33.0 90 0.0019 26.6 4.9 23 68-90 185-207 (208)
88 TIGR00895 2A0115 benzoate tran 32.0 3.4E+02 0.0073 23.5 15.2 20 186-205 296-315 (398)
89 PRK15120 lipopolysaccharide AB 31.8 1.7E+02 0.0037 26.8 6.9 62 27-88 282-347 (366)
90 PF14007 YtpI: YtpI-like prote 31.8 37 0.00081 25.8 2.1 26 67-92 54-79 (89)
91 KOG0569 Permease of the major 31.5 4.2E+02 0.0091 26.0 9.8 31 180-210 310-340 (485)
92 TIGR02230 ATPase_gene1 F0F1-AT 31.5 1E+02 0.0022 24.0 4.5 25 46-70 50-74 (100)
93 PF08229 SHR3_chaperone: ER me 31.4 50 0.0011 28.6 3.1 51 39-90 88-153 (196)
94 PF02535 Zip: ZIP Zinc transpo 31.2 2.2E+02 0.0047 25.0 7.3 56 32-88 224-286 (317)
95 PF05360 YiaAB: yiaA/B two hel 30.2 1.8E+02 0.0038 19.7 6.2 48 43-90 3-50 (53)
96 COG1238 Predicted membrane pro 30.1 3E+02 0.0066 23.0 7.5 63 5-68 20-82 (161)
97 PRK10995 inner membrane protei 29.9 1.6E+02 0.0034 25.5 5.9 33 59-91 178-213 (221)
98 COG0795 Predicted permeases [G 29.0 2E+02 0.0044 26.2 6.9 65 26-90 292-361 (364)
99 PF02683 DsbD: Cytochrome C bi 28.8 1.6E+02 0.0035 24.8 5.8 47 40-88 47-93 (211)
100 PF13150 DUF3989: Protein of u 28.6 87 0.0019 23.5 3.6 30 62-91 18-47 (85)
101 TIGR00939 2a57 Equilibrative N 28.3 2.9E+02 0.0063 26.4 8.0 81 6-86 104-191 (437)
102 COG2917 Intracellular septatio 27.9 1.3E+02 0.0029 25.8 4.9 48 41-90 22-69 (180)
103 TIGR00792 gph sugar (Glycoside 27.7 4.5E+02 0.0097 23.6 12.2 26 185-210 267-292 (437)
104 COG4300 CadD Predicted permeas 27.4 2.2E+02 0.0048 24.8 6.2 70 152-222 12-86 (205)
105 COG0861 TerC Membrane protein 27.1 1.9E+02 0.0042 25.9 6.1 61 26-91 153-213 (254)
106 COG2095 MarC Multiple antibiot 26.6 2.3E+02 0.0051 24.5 6.4 72 21-92 122-197 (203)
107 PRK11102 bicyclomycin/multidru 26.1 4.4E+02 0.0096 23.0 13.6 23 188-210 243-265 (377)
108 PF04123 DUF373: Domain of unk 25.8 5.6E+02 0.012 24.1 9.6 44 39-92 160-203 (344)
109 PF10755 DUF2585: Protein of u 25.4 2.1E+02 0.0046 24.2 5.6 51 40-91 95-145 (165)
110 COG1238 Predicted membrane pro 25.2 1.6E+02 0.0036 24.6 5.0 63 142-205 21-83 (161)
111 PRK10229 threonine efflux syst 25.1 1.2E+02 0.0027 25.3 4.4 21 69-89 185-205 (206)
112 PRK11111 hypothetical protein; 24.8 2.3E+02 0.0051 24.6 6.1 71 21-91 129-205 (214)
113 COG2917 Intracellular septatio 24.6 1.8E+02 0.004 24.9 5.2 47 177-223 22-68 (180)
114 PRK10520 rhtB homoserine/homos 24.2 2.1E+02 0.0045 23.9 5.6 21 69-89 183-203 (205)
115 PF02487 CLN3: CLN3 protein; 24.0 5E+02 0.011 24.9 8.6 21 15-38 123-143 (402)
116 PF03616 Glt_symporter: Sodium 24.0 6E+02 0.013 23.8 9.7 26 39-65 125-150 (368)
117 COG3817 Predicted membrane pro 23.9 1.3E+02 0.0028 27.6 4.4 47 65-154 2-48 (313)
118 COG3763 Uncharacterized protei 23.5 1.2E+02 0.0026 22.2 3.4 26 182-207 8-33 (71)
119 TIGR00427 membrane protein, Ma 23.0 3E+02 0.0065 23.5 6.4 70 21-90 125-200 (201)
120 PF10063 DUF2301: Uncharacteri 21.9 1.9E+02 0.0042 23.7 4.7 37 55-92 85-124 (135)
121 TIGR00893 2A0114 d-galactonate 21.4 5.1E+02 0.011 22.0 14.1 19 187-205 263-281 (399)
122 PRK10958 leucine export protei 21.0 2.6E+02 0.0057 23.7 5.6 21 69-89 190-210 (212)
123 PRK10739 putative antibiotic t 20.8 3.4E+02 0.0073 23.3 6.3 69 24-92 120-192 (197)
124 PF13150 DUF3989: Protein of u 20.4 1.4E+02 0.0031 22.3 3.4 25 198-222 18-44 (85)
No 1
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.2e-59 Score=412.48 Aligned_cols=222 Identities=54% Similarity=0.800 Sum_probs=200.6
Q ss_pred CchhhHHHHHHHHHHHHhhccchHHHHHHHHHccCCCcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHH
Q 027455 1 MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFF 80 (223)
Q Consensus 1 ~~~~~~~f~~~f~~iflaE~GDKTql~~~~LA~r~~~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl 80 (223)
|++++++|..++.+||++|+||||++++++||+||+|..||.|+..|+.+||++++++|+..++++|++|++++++++|+
T Consensus 62 ~~s~~~~f~~SiSmI~vsEiGDKTFfiAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~ 141 (294)
T KOG2881|consen 62 ASSFLQGFTASISMIFVSEIGDKTFFIAALMAMRYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFL 141 (294)
T ss_pred hHHHHHHHHHhhheeeeeeccchHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccc--CCCCchhHHHHHHhhhhhhhhccC--cccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhhc
Q 027455 81 GFGLWSLWDAFS--DGGEAEEFEEVEKKLDADFKANAG--ATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEW 156 (223)
Q Consensus 81 ~fG~~~l~~~~~--~~~~~~e~~e~e~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~l~FlaE~ 156 (223)
+||+|+|+|+++ +++++||.||+|+|+..++++.+. +..+++.-.++.+++.|+.++.+++|+|+++|.++|++||
T Consensus 142 iFGlkmL~eg~~~~~~~~~eE~eEVe~el~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~t~ffspifikaFsltF~aEw 221 (294)
T KOG2881|consen 142 IFGLKMLKEGWEMSPSEGQEELEEVEAELAKREDELDRLEEGLPGSAETGSQKSKFRRKLTLFFSPIFIKAFSLTFLAEW 221 (294)
T ss_pred HHHHHHHHHhhcCCCccchhhHHHHHHHHHhccchhhhhhhcCCCCCccchhhhhhhHHHHHhccHHHHHHHHHHHHHHh
Confidence 999999999975 566789999999999877655542 2222222223334566888889999999999999999999
Q ss_pred cchHHHHHHHHhcccCCcEeehHHHHHHHHHHHHHHHHhHHhhhhccHHHHHHH--HHHHHHHHHhhh
Q 027455 157 GDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVIMD--ICFFFFNTTYQF 222 (223)
Q Consensus 157 GDKTQlati~LA~~~~~~~V~~G~~~g~~l~t~laV~~G~~~~~~i~~~~i~~~--~lFl~fG~~~l~ 222 (223)
|||||++||+||++.+|++|++|+.+||.+||++||++|+++++|||+|++.++ ++|++||+..+|
T Consensus 222 GDRSQlaTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~Fgl~~i~ 289 (294)
T KOG2881|consen 222 GDRSQLATIALAADENPLGVAIGAIIGHALCTGLAVIGGKYLASKISVRTVTLIGGILFIIFGLVYIF 289 (294)
T ss_pred ccHHHHHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHHHhhhheeEEEEEecchhHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999 999999998775
No 2
>COG2119 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=3.2e-50 Score=338.13 Aligned_cols=180 Identities=36% Similarity=0.571 Sum_probs=163.1
Q ss_pred hHHHHHHHHHHHHhhccchHHHHHHHHHccCCCcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHH
Q 027455 5 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGL 84 (223)
Q Consensus 5 ~~~f~~~f~~iflaE~GDKTql~~~~LA~r~~~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~ 84 (223)
++.++.+.++|++||+|||||+++++||+||+|++|+.|+..|+..||.+++++|++....+|+++.++..+.+|++||+
T Consensus 1 l~~~~~s~~~v~laEiGDKT~lia~llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav 80 (190)
T COG2119 1 LEALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAV 80 (190)
T ss_pred ChhHHHHHHHHHHHHhccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCchhHHHHHHhhhhhhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhhccchHHHHH
Q 027455 85 WSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLAT 164 (223)
Q Consensus 85 ~~l~~~~~~~~~~~e~~e~e~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~l~FlaE~GDKTQlat 164 (223)
|+++|+.+++ +| .+ .+++ +.+|.++|+++|++|||||||++|
T Consensus 81 ~~l~edk~~~---~e---~~--------------------------~~~~------~~~f~~tfi~~FlaE~GDKTQiAT 122 (190)
T COG2119 81 WMLIEDKEDD---EE---AQ--------------------------AASP------RGVFVTTFITFFLAELGDKTQIAT 122 (190)
T ss_pred HHhccccccc---cc---cc--------------------------cccc------ccHHHHHHHHHHHHHhccHHHHHH
Confidence 9999863211 11 00 0111 257999999999999999999999
Q ss_pred HHHhcccC-CcEeehHHHHHHHHHHHHHHHHhHHhhhhccHHHHHHH--HHHHHHHHHhhh
Q 027455 165 IGLAADEN-PFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVIMD--ICFFFFNTTYQF 222 (223)
Q Consensus 165 i~LA~~~~-~~~V~~G~~~g~~l~t~laV~~G~~~~~~i~~~~i~~~--~lFl~fG~~~l~ 222 (223)
++||++++ |+.|++|+++||++||.++|++|+++++|+|+|+++.+ ++|++||+..+|
T Consensus 123 IaLaA~~~~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~ 183 (190)
T COG2119 123 IALAADYHSPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLW 183 (190)
T ss_pred HHHhhcCCCceeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999975 69999999999999999999999999999999999999 999999987765
No 3
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=99.91 E-value=4.7e-25 Score=163.39 Aligned_cols=76 Identities=32% Similarity=0.415 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHccC--CCcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHH
Q 027455 8 FTKSLAMTVLSEIGDKTFFAAAILAMRH--PRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFG 83 (223)
Q Consensus 8 f~~~f~~iflaE~GDKTql~~~~LA~r~--~~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG 83 (223)
|+++|.++|++|+|||||++++.||+|| +++.|++|+.+|++++|.++|++|+++.+++|++++++++|++|++||
T Consensus 1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~fG 78 (78)
T PF01169_consen 1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLLFG 78 (78)
T ss_pred CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Confidence 5789999999999999999999999999 667999999999999999999999999999999999999999999997
No 4
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=99.91 E-value=2e-24 Score=160.00 Aligned_cols=74 Identities=45% Similarity=0.638 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHhccc--CCcEeehHHHHHHHHHHHHHHHHhHHhhhhccHHHHHHH--HHHHHHH
Q 027455 144 FLKAFSITFFGEWGDKSQLATIGLAADE--NPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVIMD--ICFFFFN 217 (223)
Q Consensus 144 f~~af~l~FlaE~GDKTQlati~LA~~~--~~~~V~~G~~~g~~l~t~laV~~G~~~~~~i~~~~i~~~--~lFl~fG 217 (223)
|+++|.++|++|||||||++|++||+|| +|+.|++|+.+|+++++.++|++|+++.+++|+++++++ ++|+.||
T Consensus 1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~fG 78 (78)
T PF01169_consen 1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLLFG 78 (78)
T ss_pred CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Confidence 5789999999999999999999999999 899999999999999999999999999999999999999 9999987
No 5
>COG2119 Predicted membrane protein [Function unknown]
Probab=99.87 E-value=6.3e-22 Score=167.05 Aligned_cols=87 Identities=28% Similarity=0.452 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHHhhccchHHHHHHHHHccCCC-cEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHH
Q 027455 5 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPR-RLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFG 83 (223)
Q Consensus 5 ~~~f~~~f~~iflaE~GDKTql~~~~LA~r~~~-~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG 83 (223)
...|.++|.++|++|||||||++|+.||++|+. |.||+|+.+|+++||+++|+.|+++++++|++.++.++|++|++||
T Consensus 99 ~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fa 178 (190)
T COG2119 99 RGVFVTTFITFFLAELGDKTQIATIALAADYHSPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFA 178 (190)
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHhhcCCCceeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 558999999999999999999999999999997 7999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcc
Q 027455 84 LWSLWDAF 91 (223)
Q Consensus 84 ~~~l~~~~ 91 (223)
+..+|+..
T Consensus 179 l~~~~~~~ 186 (190)
T COG2119 179 LVLLWQVF 186 (190)
T ss_pred HHHHHHHH
Confidence 99999863
No 6
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=99.72 E-value=2.5e-18 Score=151.94 Aligned_cols=87 Identities=28% Similarity=0.328 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHHhhccchHHHHHHHHHccCCCcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHH
Q 027455 5 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGL 84 (223)
Q Consensus 5 ~~~f~~~f~~iflaE~GDKTql~~~~LA~r~~~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~ 84 (223)
...|+.+|.++|++|||||+|++|+.||++-+++.|++|+.+|+.+||.++|..|++++++|+++.+.+++|++|+.||+
T Consensus 206 spifikaFsltF~aEwGDRSQlaTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~Fgl 285 (294)
T KOG2881|consen 206 SPIFIKAFSLTFLAEWGDRSQLATIALAADENPLGVAIGAIIGHALCTGLAVIGGKYLASKISVRTVTLIGGILFIIFGL 285 (294)
T ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHHHhhhheeEEEEEecchhHHHHHH
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcc
Q 027455 85 WSLWDAF 91 (223)
Q Consensus 85 ~~l~~~~ 91 (223)
..+++..
T Consensus 286 ~~i~~~~ 292 (294)
T KOG2881|consen 286 VYIFQGF 292 (294)
T ss_pred HHHhcCC
Confidence 9998763
No 7
>COG4280 Predicted membrane protein [Function unknown]
Probab=97.94 E-value=0.00011 Score=63.57 Aligned_cols=155 Identities=24% Similarity=0.322 Sum_probs=101.7
Q ss_pred CCCcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhccc------CCCCchhHHHHHHhhh
Q 027455 35 HPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS------DGGEAEEFEEVEKKLD 108 (223)
Q Consensus 35 ~~~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~~~------~~~~~~e~~e~e~~i~ 108 (223)
++.+.-+.|+.+|+++.-.++..+|+.+ +++|.+++++++|++.+.||-.-++...+ ..++||.. ||.+.
T Consensus 31 ~~wr~al~ga~lglalvl~l~lvlGk~L-~lvPln~lqiv~gvLLllFG~rw~Rsavrr~ag~rkg~~ee~l---eE~~~ 106 (236)
T COG4280 31 YKWRLALIGAVLGLALVLILTLVLGKLL-YLVPLNYLQIVSGVLLLLFGYRWIRSAVRRFAGIRKGGGEEKL---EEGIV 106 (236)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHccce-eeeechHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCchhhH---hhhhh
Confidence 4455789999999999999999999998 89999999999999999999988876542 22233332 23333
Q ss_pred hhhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHhcc-cCCcEeehHHHHHHHHH
Q 027455 109 ADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD-ENPFGVVLGGIIGQALC 187 (223)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~l~FlaE~GDKTQlati~LA~~-~~~~~V~~G~~~g~~l~ 187 (223)
.|.++++ ++ .-.+..+|-..-+ | |=.--+..++|.+. .++..-..|+..+..+.
T Consensus 107 ldq~e~g--------------------~~---~la~l~~fk~v~L-e-glEv~~iVialgaa~sqwleAi~gagfA~vlv 161 (236)
T COG4280 107 LDQEEEG--------------------FS---KLALLVVFKVVAL-E-GLEVSLIVIALGAASSQWLEAIMGAGFASVLV 161 (236)
T ss_pred ccccccc--------------------ch---hhhHHHHhHHHHH-h-hheeeeeeeeechhhhHHHHHHHHHHHHHHHH
Confidence 2211100 00 0123333322111 1 11122334445444 34556677888888888
Q ss_pred HHHHHHHhHHhhhhccHHHHHHH--HHHHHHHHH
Q 027455 188 TTAAVIGGKSLASQISEKIVIMD--ICFFFFNTT 219 (223)
Q Consensus 188 t~laV~~G~~~~~~i~~~~i~~~--~lFl~fG~~ 219 (223)
-.++.++-+.++ |+|++.+|.. .+-..||.+
T Consensus 162 lvl~~~lh~pla-rvpe~~lKfvag~lL~sfGtf 194 (236)
T COG4280 162 LVLTAILHSPLA-RVPEPHLKFVAGALLFSFGTF 194 (236)
T ss_pred HHHHHHhccHHh-hCCchhHHHHHHHHHHHhhHH
Confidence 888888877776 7999999999 666677764
No 8
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=97.78 E-value=0.0006 Score=58.91 Aligned_cols=49 Identities=16% Similarity=0.424 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 027455 46 GALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDG 94 (223)
Q Consensus 46 ~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~~~~~ 94 (223)
.-..+++.++..+|+.+.+++|+++-+++++++++++|++++++.++++
T Consensus 38 ~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~~~~ 86 (206)
T TIGR02840 38 VISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAFRPK 86 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445899999999999999999999999999999999999999998643
No 9
>PRK11469 hypothetical protein; Provisional
Probab=97.69 E-value=0.00051 Score=58.69 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhcccC
Q 027455 48 LIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSD 93 (223)
Q Consensus 48 l~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~~~~ 93 (223)
..++..++-..|+.+.+++|+ +-||+++.+.+..|.||++|++++
T Consensus 47 q~~m~~~g~~~G~~l~~~i~~-~~~~i~~~lL~~lG~~mi~e~~~~ 91 (188)
T PRK11469 47 ETLTPLIGWGMGMLASRFVLE-WNHWIAFVLLIFLGGRMIIEGFRG 91 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367788888899999899777 779999999999999999999863
No 10
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=97.69 E-value=0.002 Score=53.54 Aligned_cols=67 Identities=12% Similarity=0.043 Sum_probs=52.6
Q ss_pred HHHHHHHccCCCc---EeehhHHHHHHHHHHHHHHHHhhhhcccC--HHHHHHHHHHHHHHHHHHHhhhccc
Q 027455 26 FAAAILAMRHPRR---LVLSGCLGALIVMTILSAVVGWVAPNLIS--RKLTHHITTVLFFGFGLWSLWDAFS 92 (223)
Q Consensus 26 l~~~~LA~r~~~~---~V~~G~~~al~~~t~lav~~G~~l~~~lp--~~~i~~~ag~lFl~fG~~~l~~~~~ 92 (223)
+..+--+.+++++ .+.+|...+-.+...+++..-..+.+..| ..+++++++...+.+|..++++..+
T Consensus 12 ~~~i~~~~~~G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~~ 83 (191)
T PF01810_consen 12 LLVISNGLRKGFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKFS 83 (191)
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4555666677653 58899999999998888887777766555 4578999999999999999988754
No 11
>COG1971 Predicted membrane protein [Function unknown]
Probab=97.43 E-value=0.0025 Score=54.74 Aligned_cols=44 Identities=25% Similarity=0.536 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhhhcccC---HHHHHHHHHHHHHHHHHHHhhhcccC
Q 027455 50 VMTILSAVVGWVAPNLIS---RKLTHHITTVLFFGFGLWSLWDAFSD 93 (223)
Q Consensus 50 ~~t~lav~~G~~l~~~lp---~~~i~~~ag~lFl~fG~~~l~~~~~~ 93 (223)
+-+.+.-++|.++++++| ..+-||+++++....|++|+++++++
T Consensus 45 ~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e~f~~ 91 (190)
T COG1971 45 VFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIEGFKN 91 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 345566666666666666 67889999999999999999999874
No 12
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=97.09 E-value=0.004 Score=53.54 Aligned_cols=53 Identities=13% Similarity=0.216 Sum_probs=46.0
Q ss_pred CcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhc
Q 027455 37 RRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA 90 (223)
Q Consensus 37 ~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~ 90 (223)
++.|.+|-.+|..+.-..|...+..+ +++|++|+--.-|.+=+.+|++.++++
T Consensus 25 ~~~I~~GqylG~~~Lv~~Sl~~~~~l-~~ip~~wiLGlLGliPI~lGi~~l~~~ 77 (191)
T PF03596_consen 25 RRQIVIGQYLGFTILVLASLLGAFGL-LFIPPEWILGLLGLIPIYLGIKALFSG 77 (191)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56899999999988888888877775 599999998889999999999988754
No 13
>PRK10229 threonine efflux system; Provisional
Probab=96.02 E-value=0.51 Score=39.87 Aligned_cols=70 Identities=14% Similarity=0.120 Sum_probs=50.8
Q ss_pred ccchHHHHHHHHHccCCCc---EeehhHHHHHHHHHHHHHHHHhhhhcccCH--HHHHHHHHHHHHHHHHHHhhhc
Q 027455 20 IGDKTFFAAAILAMRHPRR---LVLSGCLGALIVMTILSAVVGWVAPNLISR--KLTHHITTVLFFGFGLWSLWDA 90 (223)
Q Consensus 20 ~GDKTql~~~~LA~r~~~~---~V~~G~~~al~~~t~lav~~G~~l~~~lp~--~~i~~~ag~lFl~fG~~~l~~~ 90 (223)
-|. ..+.++.-+.+++++ ...+|...|..+...+++..-..+.+..|. ..+++++++-.+.+|..++++.
T Consensus 19 PGP-~~~~vi~~~~~~G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~~~~~~~ 93 (206)
T PRK10229 19 PGP-DFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWMGYQMLRGA 93 (206)
T ss_pred CCc-hhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 354 666777777777754 477889999988888877777666666663 4577777777777888888765
No 14
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=96.01 E-value=0.18 Score=41.71 Aligned_cols=64 Identities=13% Similarity=0.025 Sum_probs=45.6
Q ss_pred HHHHHHccCCC---cEeehhHHHHHHHHHHHHHHHHhhhhcccCH--HHHHHHHHHHHHHHHHHHhhhc
Q 027455 27 AAAILAMRHPR---RLVLSGCLGALIVMTILSAVVGWVAPNLISR--KLTHHITTVLFFGFGLWSLWDA 90 (223)
Q Consensus 27 ~~~~LA~r~~~---~~V~~G~~~al~~~t~lav~~G~~l~~~lp~--~~i~~~ag~lFl~fG~~~l~~~ 90 (223)
.++.-+.++++ ..+.+|..+|..+...+++..-..+-+..|. .+++++++.-.+.+|..++++.
T Consensus 8 ~~~~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~~ 76 (185)
T TIGR00949 8 VVMQTSLSSGRRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRKK 76 (185)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34444555543 3588899999999988888766556566664 5678888877788998888754
No 15
>COG0730 Predicted permeases [General function prediction only]
Probab=96.00 E-value=0.37 Score=42.06 Aligned_cols=54 Identities=17% Similarity=0.149 Sum_probs=47.5
Q ss_pred cEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhcc
Q 027455 38 RLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAF 91 (223)
Q Consensus 38 ~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~~ 91 (223)
..+-.-...-+...+.++..+|.++..++|+++.+..-+.+.+..+++++++..
T Consensus 69 ~~v~~~~~~~l~~~~~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~~ 122 (258)
T COG0730 69 GNVDWKLALILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGPR 122 (258)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 357777777888888999999999999999999999999999999999998753
No 16
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=95.65 E-value=0.73 Score=39.68 Aligned_cols=135 Identities=19% Similarity=0.143 Sum_probs=82.4
Q ss_pred eehhHHHHHHHHHHHHHHHHhhhhcc--cCHHHHHHHHHHHHHHHHHHHhhhcccCCCC-chhHHHHHHhhhhhhhhccC
Q 027455 40 VLSGCLGALIVMTILSAVVGWVAPNL--ISRKLTHHITTVLFFGFGLWSLWDAFSDGGE-AEEFEEVEKKLDADFKANAG 116 (223)
Q Consensus 40 V~~G~~~al~~~t~lav~~G~~l~~~--lp~~~i~~~ag~lFl~fG~~~l~~~~~~~~~-~~e~~e~e~~i~~~~~~~~~ 116 (223)
+..=+...-.+.-.+..++|+++-+. ++....+..+|++.+..|+.|+....++++. ++|.+|.+ + ..
T Consensus 39 ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~~~~~~~~~~~~~~~~~~---~------~~ 109 (203)
T PF01914_consen 39 IARRASIIAFIILLIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLFGSPSSEKSSPDEKEEAK---D------AE 109 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCCcccccccchhhhhc---c------cc
Confidence 33334444444555667788888775 4788899999999999999999865432111 11111000 0 00
Q ss_pred cccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHhcccCC---cEeehHHHHHHHHHHHHHHH
Q 027455 117 ATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENP---FGVVLGGIIGQALCTTAAVI 193 (223)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~l~FlaE~GDKTQlati~LA~~~~~---~~V~~G~~~g~~l~t~laV~ 193 (223)
+ .- +.| +.+--=-|.-|=-+++.++++++. ..+.+++.+...+.+.+.-.
T Consensus 110 ~------------~a--------i~P-------La~PllaGPG~It~vi~~~~~~~~~~~~~~~~~ai~~~~~~~~l~l~ 162 (203)
T PF01914_consen 110 D------------IA--------IVP-------LAIPLLAGPGTITTVIVLSAEAGSLQSLLIVLIAILLVALITYLILR 162 (203)
T ss_pred c------------ce--------ecc-------cchhhccChHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 011 011111255555566677777653 45566777788888888888
Q ss_pred HhHHhhhhccHHHHHHH
Q 027455 194 GGKSLASQISEKIVIMD 210 (223)
Q Consensus 194 ~G~~~~~~i~~~~i~~~ 210 (223)
.++++.+++.+.-++.+
T Consensus 163 ~a~~i~~~lG~~g~~vi 179 (203)
T PF01914_consen 163 FADKIMRRLGKTGLQVI 179 (203)
T ss_pred HhHHHHHHhhhHHHHHH
Confidence 99999999998887766
No 17
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=95.46 E-value=0.2 Score=43.11 Aligned_cols=74 Identities=11% Similarity=0.048 Sum_probs=53.1
Q ss_pred HHhhccchHHHHHHHHHccC---CCcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhc
Q 027455 16 VLSEIGDKTFFAAAILAMRH---PRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA 90 (223)
Q Consensus 16 flaE~GDKTql~~~~LA~r~---~~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~ 90 (223)
+.|-==|--=+..+..|.+- +++.+++|=.+|.+..-+.|.. +.+..+++|++|+--.-|..=+..|+|.++.+
T Consensus 12 y~aTaiD~lIiL~l~Far~~~~k~~~~I~~GQyLGs~~lilaSL~-~a~v~~fvp~e~I~glLGLIPi~LGik~l~~~ 88 (205)
T COG4300 12 YIATAIDLLIILLLFFARRKSRKDILHIYLGQYLGSVILILASLL-FAFVLNFVPEEWILGLLGLIPIYLGIKVLILG 88 (205)
T ss_pred HHHhhHHHHHHHHHHHHHhcccCcEEEEeHHHHHhHHHHHHHHHH-HHHHHhhCcHHHHHHHHhHHHHHHhhHHhhcc
Confidence 33443455555556666554 2357999998887766555544 44467889999999999999999999998865
No 18
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=95.43 E-value=1 Score=38.32 Aligned_cols=157 Identities=20% Similarity=0.188 Sum_probs=88.3
Q ss_pred cchHHHHHHHHHc---cCCCcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhcccCCCCc
Q 027455 21 GDKTFFAAAILAM---RHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEA 97 (223)
Q Consensus 21 GDKTql~~~~LA~---r~~~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~~~~~~~~ 97 (223)
+|+-.+.+++... +++++..+.|...|++.=.++-.. |.++-+.. .++++++|+..+..|..++++..+.|+
T Consensus 12 ~DN~~vi~~~~~~lp~~~r~kal~~Gi~~A~~lR~~~i~~-~~~ll~~~--~~i~~igG~~Ll~~a~k~~~~~~~~d~-- 86 (183)
T PF03741_consen 12 IDNAFVIAMIFRKLPPEQRRKALFWGIIGAIVLRIIFIFL-ASWLLSIF--PWILLIGGLFLLYIAIKLLHEERDEDP-- 86 (183)
T ss_pred hhHHHHHHHHHhCCCHHHhhhhHHHhHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccc--
Confidence 5665555544333 233467999999998665555444 44443432 678888888888888888876542111
Q ss_pred hhHHHHHHhhhhhhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhhccch-----HHHHHHHHhcccC
Q 027455 98 EEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDK-----SQLATIGLAADEN 172 (223)
Q Consensus 98 ~e~~e~e~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~l~FlaE~GDK-----TQlati~LA~~~~ 172 (223)
|.++.++ .+ + ..+++ ...++.+.. .-|.=|= |=++.++++ .+
T Consensus 87 -~~~~~~~-~~----~----------------~~~~~------~~~~~~~v~---~I~~~DlvfSlDSV~a~~~it--~~ 133 (183)
T PF03741_consen 87 -ENAEVEE-EK----K----------------FFPVS------KSSLWLAVI---QIELADLVFSLDSVLAAVGIT--DD 133 (183)
T ss_pred -chhhhhh-hh----c----------------cccch------hHHHHHHHH---HHHHHHHHHHHhHHHHHHHHh--hh
Confidence 1111110 00 0 00000 011333322 2233342 445666666 67
Q ss_pred CcEeehHHHHHHHHHHHHHHHHhHHhhhhccHHHHHHH-HHHHH
Q 027455 173 PFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVIMD-ICFFF 215 (223)
Q Consensus 173 ~~~V~~G~~~g~~l~t~laV~~G~~~~~~i~~~~i~~~-~lFl~ 215 (223)
++.++.|..++....-..+-.+.+++.++-..++.-.. +.|++
T Consensus 134 ~~iv~~g~i~si~~m~~~~~~~~~~l~~~p~l~~~~~~~L~~ig 177 (183)
T PF03741_consen 134 FFIVITGNIISILLMRFLSFLLAKLLERFPYLKYLAAAILGFIG 177 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999888888888888765443333333 44433
No 19
>PRK10621 hypothetical protein; Provisional
Probab=95.34 E-value=1.4 Score=38.99 Aligned_cols=51 Identities=22% Similarity=0.303 Sum_probs=43.9
Q ss_pred EeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhh
Q 027455 39 LVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWD 89 (223)
Q Consensus 39 ~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~ 89 (223)
.+=.-...-+.+.+++++.+|.++.+++|+++.+++-+++.+..++++++.
T Consensus 74 ~v~~~~~~~l~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~~ 124 (266)
T PRK10621 74 VVNLADQKLNIAMTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLLM 124 (266)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 455666677888899999999999999999999999999888888888764
No 20
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=95.26 E-value=0.48 Score=40.35 Aligned_cols=48 Identities=15% Similarity=0.260 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhc
Q 027455 43 GCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA 90 (223)
Q Consensus 43 G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~ 90 (223)
=...-+....++++.+|.++...+|+++++...++.-+.++.++++..
T Consensus 64 ~~~~~~~~~~~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~~~~~~~~ 111 (240)
T PF01925_consen 64 KIVLPLIIGALIGVVIGAWLLSLLPDDILKLIFGLFLLLLAIYMLLKK 111 (240)
T ss_pred hhhhhhhhHhHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344556778888999999999999999999999999999999998854
No 21
>PRK10995 inner membrane protein; Provisional
Probab=95.15 E-value=0.89 Score=39.55 Aligned_cols=44 Identities=9% Similarity=0.061 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhhhhccc--CHHHHHHHHHHHHHHHHHHHhhhcc
Q 027455 48 LIVMTILSAVVGWVAPNLI--SRKLTHHITTVLFFGFGLWSLWDAF 91 (223)
Q Consensus 48 l~~~t~lav~~G~~l~~~l--p~~~i~~~ag~lFl~fG~~~l~~~~ 91 (223)
-.+.-++..+.|+.+.+++ +....++.+|++.+.+|+.|+++..
T Consensus 51 a~~ill~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~~~ 96 (221)
T PRK10995 51 VFAIMMVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFPQQ 96 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3334446777788877755 6678999999999999999997653
No 22
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=94.26 E-value=2.7 Score=38.25 Aligned_cols=154 Identities=21% Similarity=0.229 Sum_probs=87.2
Q ss_pred CcEeehhHHHHHHHHHHHHHHHHhhhhcccC-----------HHHHHHHHHHHHHHHHHHHhhhcccCCCCchhHHHHHH
Q 027455 37 RRLVLSGCLGALIVMTILSAVVGWVAPNLIS-----------RKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEK 105 (223)
Q Consensus 37 ~~~V~~G~~~al~~~t~lav~~G~~l~~~lp-----------~~~i~~~ag~lFl~fG~~~l~~~~~~~~~~~e~~e~e~ 105 (223)
+++|+.|...|++.+-.++..+-..... ++ +..+..++.++-....+||.....+ .++ |.|+
T Consensus 35 ~~~V~~G~~~g~~~s~~~~~~~~~~~~~-~~~~~~~~~~e~~eg~~~liA~~li~~m~~wm~~~~~~---~~~---~~~~ 107 (306)
T PF03239_consen 35 RRWVWLGVAAGLVASLVIGAVFAVIFYT-LSGDYWGISEELFEGAISLIAVALITWMVFWMRRHGRK---MKG---EWED 107 (306)
T ss_pred hheeeecHhHHHHHHHHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hch---hHHH
Confidence 3689999999999999998887766533 33 2335666666777778888764321 111 1222
Q ss_pred hhhhhhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHhcccC--CcEeehHHHHH
Q 027455 106 KLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADEN--PFGVVLGGIIG 183 (223)
Q Consensus 106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~l~FlaE~GDKTQlati~LA~~~~--~~~V~~G~~~g 183 (223)
++++.-....+..+.. ......++ ....|..+|+ +.+=| |=-|=+-..++.+..+ ...+..|...|
T Consensus 108 ~~~~~~~~~~~~~~~~-----~~~~~~~~-----~~~l~~~afl-~vlRE-G~E~vLfl~a~~~~~~~~~~~~~~g~~~G 175 (306)
T PF03239_consen 108 KLAKALSSGSEDARAS-----QKDEGGGS-----KWALFLLAFL-IVLRE-GLEAVLFLAALAASLRKDAASILLGAILG 175 (306)
T ss_pred HHHHHHhhccchhhhh-----hhccccch-----hhHHHHHHHH-HHHHh-hHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 2221111100000000 00001111 1345666664 23333 4445555555555533 57788899999
Q ss_pred HHHHHHHHHHHhHHhhhhccHHHHHHH
Q 027455 184 QALCTTAAVIGGKSLASQISEKIVIMD 210 (223)
Q Consensus 184 ~~l~t~laV~~G~~~~~~i~~~~i~~~ 210 (223)
..++..++.+.-+. ..++|.+..-.+
T Consensus 176 ~~~a~~~~~~~~~~-~~~i~~~~~f~~ 201 (306)
T PF03239_consen 176 IAAAVVLGWLLYRG-LIRISLRSFFII 201 (306)
T ss_pred HHHHHHHHHHHHHH-HHhcChHHHHHH
Confidence 99988888887665 457888877666
No 23
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=94.10 E-value=3.9 Score=37.22 Aligned_cols=54 Identities=22% Similarity=0.244 Sum_probs=40.0
Q ss_pred CcEeehhHHHHHHHHHHHHHHHHhhhhcccC---HH----HHHHHHHHHHHHHHHHHhhhc
Q 027455 37 RRLVLSGCLGALIVMTILSAVVGWVAPNLIS---RK----LTHHITTVLFFGFGLWSLWDA 90 (223)
Q Consensus 37 ~~~V~~G~~~al~~~t~lav~~G~~l~~~lp---~~----~i~~~ag~lFl~fG~~~l~~~ 90 (223)
++.|+.|+..|++++-++++++-......-. ++ .+.+++.++-..+++||..++
T Consensus 38 ~~~V~~G~~~gl~~s~~~a~~~~~~~~~~~~~~~~el~eg~~~lvAv~~l~~m~~Wm~~~~ 98 (283)
T TIGR00145 38 RGWVWVGVLAGFAACLAIGIGVIGAYGSLQKDEFKELLEGIFGVIAVVMLSYMGLWMLRMQ 98 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999998888877665443322 23 467788888889999998543
No 24
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=93.65 E-value=2.9 Score=38.52 Aligned_cols=77 Identities=22% Similarity=0.279 Sum_probs=50.0
Q ss_pred HHHHHHHHhhc---cchHHHHHHHHHcc-CC----CcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHH
Q 027455 10 KSLAMTVLSEI---GDKTFFAAAILAMR-HP----RRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFG 81 (223)
Q Consensus 10 ~~f~~iflaE~---GDKTql~~~~LA~r-~~----~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~ 81 (223)
..|....+-|. +|+-...++..+.+ -| ++..+.|...|++.=.+. +.+|.++-+.. .++.++.|+..+.
T Consensus 63 ~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~gAlvlR~i~-i~~g~~Li~~f--~wi~~ifG~fLi~ 139 (302)
T TIGR03718 63 LEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILGALVLRAIF-IALGAALIEQF--HWVLYIFGAFLLY 139 (302)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 44555566664 89999898888753 23 357888888887765544 45555554433 4677777766666
Q ss_pred HHHHHhhh
Q 027455 82 FGLWSLWD 89 (223)
Q Consensus 82 fG~~~l~~ 89 (223)
-|..++++
T Consensus 140 ~a~k~~~~ 147 (302)
T TIGR03718 140 TGIKMLFE 147 (302)
T ss_pred HHHHHHhh
Confidence 66666654
No 25
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=93.62 E-value=3.9 Score=34.50 Aligned_cols=69 Identities=12% Similarity=0.036 Sum_probs=48.4
Q ss_pred chHHHHHHHHHccCCCc---EeehhHHHHHHHHHHHHHHHHhhhhcccCHH--HHHHHHHHHHHHHHHHHhhhc
Q 027455 22 DKTFFAAAILAMRHPRR---LVLSGCLGALIVMTILSAVVGWVAPNLISRK--LTHHITTVLFFGFGLWSLWDA 90 (223)
Q Consensus 22 DKTql~~~~LA~r~~~~---~V~~G~~~al~~~t~lav~~G~~l~~~lp~~--~i~~~ag~lFl~fG~~~l~~~ 90 (223)
.=..+..+.-+.+++++ ...+|...|..+...+++..-..+.+..|.- +++++++.-.+.+|..++++.
T Consensus 21 GP~~~~v~~~~~~~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~~~s~ 94 (205)
T PRK10520 21 GSGAINTMSTSISHGYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQWRAA 94 (205)
T ss_pred chhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33455566666666643 5778999999998888776666555555543 567777777788999988764
No 26
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=93.30 E-value=4.2 Score=34.36 Aligned_cols=65 Identities=23% Similarity=0.299 Sum_probs=46.3
Q ss_pred cchHHHHHHHHHccCCC----cEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhc
Q 027455 21 GDKTFFAAAILAMRHPR----RLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA 90 (223)
Q Consensus 21 GDKTql~~~~LA~r~~~----~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~ 90 (223)
+|+-.+.++ .+.+.++ +....|...|++...+...... ++-+ -.+.++.+|++.+..|..++.+.
T Consensus 14 ~DN~~vi~~-~t~~lp~~~r~~~~~~G~~~A~vlr~if~~~G~-~ll~---~~~~~iaGGllLl~ia~~ml~~~ 82 (176)
T TIGR03717 14 GDNAVVIAL-AARNLPAHQRKKAIFWGTAGAIVLRILLTAVAV-YLLA---IPFLKLIGGLLLLWIGWKLLLEE 82 (176)
T ss_pred HHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---hHHHHHHHHHHHHHHHHHHHhcc
Confidence 688777766 2333332 4688899888888777665544 4444 37889999999999999888653
No 27
>PRK10958 leucine export protein LeuE; Provisional
Probab=93.00 E-value=5.3 Score=34.19 Aligned_cols=66 Identities=14% Similarity=0.055 Sum_probs=44.4
Q ss_pred HHHHHHHccCCCc---EeehhHHHHHHHHHHHHHHHHhhhhcccCH--HHHHHHHHHHHHHHHHHHhhhcc
Q 027455 26 FAAAILAMRHPRR---LVLSGCLGALIVMTILSAVVGWVAPNLISR--KLTHHITTVLFFGFGLWSLWDAF 91 (223)
Q Consensus 26 l~~~~LA~r~~~~---~V~~G~~~al~~~t~lav~~G~~l~~~lp~--~~i~~~ag~lFl~fG~~~l~~~~ 91 (223)
+..+.-+.+++++ ...+|..+|..+...+++..-..+.+..|. ..++++++.-.+.+|...+++..
T Consensus 29 ~~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~~~~~ 99 (212)
T PRK10958 29 LYVLSTAARRGVKAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGVKMLRAAL 99 (212)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555566543 577899999888877777655445454553 35677777777889998887753
No 28
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=92.50 E-value=1.9 Score=37.72 Aligned_cols=143 Identities=22% Similarity=0.240 Sum_probs=78.1
Q ss_pred cchHHHHHHHHH---ccCCCcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhcccCCCCc
Q 027455 21 GDKTFFAAAILA---MRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEA 97 (223)
Q Consensus 21 GDKTql~~~~LA---~r~~~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~~~~~~~~ 97 (223)
+|+-.+++++-. .+++++..+.|...|++.=-++.......+ + ..++++++|+..+.-|..++++.- ++
T Consensus 9 ~DN~~via~~~~~LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll-~---~~~l~~iGG~~Ll~~~~k~l~~~~----~~ 80 (215)
T TIGR03716 9 ADNALVLAVMVKHLPEKQRKKALFYGLIGAYVFRFIALFLASFLI-K---FWWIKAIGALYLLYLAIKHFRKKK----KG 80 (215)
T ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHhcc----cc
Confidence 466555555433 122335789999999887766665544444 3 237777777777777777776531 11
Q ss_pred hhHHHHHHhhhhhhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhhccch-----HHHHHHHHhcccC
Q 027455 98 EEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDK-----SQLATIGLAADEN 172 (223)
Q Consensus 98 ~e~~e~e~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~l~FlaE~GDK-----TQlati~LA~~~~ 172 (223)
++.+|.+ . ++..+ -|+.+. ..-|.=|= +=+|.++++ .+
T Consensus 81 ~~~~~~~----------~-------------~~~~~---------~f~~av---~~I~~~DlvFSlDSV~A~~git--~~ 123 (215)
T TIGR03716 81 KEDEEAE----------K-------------KKAHS---------GFWRTV---LKVELMDIAFSVDSILAAVALS--GQ 123 (215)
T ss_pred ccccccc----------c-------------ccccc---------hHHHHH---HHHHHHHHHHHhhhHHHHHHhc--cC
Confidence 1100000 0 00001 122222 22233332 334555554 67
Q ss_pred CcEeehHHHHHHHHHHHHHHHHhHHhhhhccHHHHH
Q 027455 173 PFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVI 208 (223)
Q Consensus 173 ~~~V~~G~~~g~~l~t~laV~~G~~~~~~i~~~~i~ 208 (223)
|+.++.|..++....-..+-+..+++.++-..++.-
T Consensus 124 ~~ii~~g~~~sIl~lr~~s~~l~~li~r~p~L~~~~ 159 (215)
T TIGR03716 124 FWVVFLGGIIGILIMRFAATIFVKLLERFPELETAA 159 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888988888887777777777766644333333
No 29
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=91.79 E-value=7.6 Score=33.23 Aligned_cols=66 Identities=12% Similarity=0.044 Sum_probs=45.2
Q ss_pred HHHHHHHHHccCCCc---EeehhHHHHHHHHHHHHHHH-HhhhhcccC--HHHHHHHHHHHHHHHHHHHhhhc
Q 027455 24 TFFAAAILAMRHPRR---LVLSGCLGALIVMTILSAVV-GWVAPNLIS--RKLTHHITTVLFFGFGLWSLWDA 90 (223)
Q Consensus 24 Tql~~~~LA~r~~~~---~V~~G~~~al~~~t~lav~~-G~~l~~~lp--~~~i~~~ag~lFl~fG~~~l~~~ 90 (223)
..+.++.-+++++++ .+-+|...+..+...+++.. +..+ ..-| -..++++++.-.+.+|..+++..
T Consensus 23 ~~~~v~~~~~~~G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all-~~~~~~f~~lk~~GaaYL~ylg~~~~ra~ 94 (208)
T COG1280 23 DNLLVLARSLSRGRRAGLATALGIALGDLVHMLLAALGLAALL-ATSPALFTVLKLAGAAYLLYLGWKALRAG 94 (208)
T ss_pred cHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445556667776653 68888888888877776664 2333 3333 24578888888888999888876
No 30
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=91.79 E-value=0.67 Score=40.03 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=45.6
Q ss_pred cCCCcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhh
Q 027455 34 RHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWD 89 (223)
Q Consensus 34 r~~~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~ 89 (223)
|++++.+.+|-.+|..+.-..|+..+.. ...+|++|+--.-|.+=+.+|++.+++
T Consensus 21 ~~~~~~IviGqylGf~~Lv~~Sl~~a~g-l~~iP~~wIlGlLGliPI~lGi~~l~~ 75 (193)
T TIGR00779 21 RKEYKDIYIGQYLGSIILILVSLLLAFG-VNLIPEKWVLGLLGLIPIYLGIKVAIK 75 (193)
T ss_pred CCCeeEEEEeHHHHHHHHHHHHHHHHHH-HHhCCHHHHHhHHhHHHHHHHHHHHhc
Confidence 5667899999999988877777775554 368999999888889889999998876
No 31
>PRK09304 arginine exporter protein; Provisional
Probab=91.70 E-value=7.5 Score=33.00 Aligned_cols=65 Identities=11% Similarity=0.013 Sum_probs=42.7
Q ss_pred HHHHHHHccCCC-cEeehhHHHHHHHHHHHHHHHHhhhhcccCH--HHHHHHHHHHHHHHHHHHhhhc
Q 027455 26 FAAAILAMRHPR-RLVLSGCLGALIVMTILSAVVGWVAPNLISR--KLTHHITTVLFFGFGLWSLWDA 90 (223)
Q Consensus 26 l~~~~LA~r~~~-~~V~~G~~~al~~~t~lav~~G~~l~~~lp~--~~i~~~ag~lFl~fG~~~l~~~ 90 (223)
+.++.-+.++++ .....|...+..+...+++..-..+-+..|. ..++++++.-.+.+|..++++.
T Consensus 24 ~~v~~~~~~~~~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLlyLg~~~~rs~ 91 (207)
T PRK09304 24 AFVMNQGIRRQYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLWYGFGAFKTA 91 (207)
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444556543 2577788888888877766665555555553 3467777777777898888764
No 32
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=90.21 E-value=10 Score=31.92 Aligned_cols=70 Identities=14% Similarity=0.061 Sum_probs=47.2
Q ss_pred cchHHHHHHHHHccCCCc---EeehhHHHHHHHHHHHHHHHHhhhhcccCHH--HHHHHHHHHHHHHHHHHhhhc
Q 027455 21 GDKTFFAAAILAMRHPRR---LVLSGCLGALIVMTILSAVVGWVAPNLISRK--LTHHITTVLFFGFGLWSLWDA 90 (223)
Q Consensus 21 GDKTql~~~~LA~r~~~~---~V~~G~~~al~~~t~lav~~G~~l~~~lp~~--~i~~~ag~lFl~fG~~~l~~~ 90 (223)
..=+.+..+.-+.+++++ ....|...|..+...++......+.+..|.- .++++++.-.+..|..+++.+
T Consensus 20 PGP~~~~v~~~~~~~G~r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~~~~s~ 94 (195)
T PRK10323 20 PGPNNILALSSATSHGFRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATSP 94 (195)
T ss_pred CChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344556666667777653 5889999999998777775554555555533 466666666677998888753
No 33
>TIGR00948 2a75 L-lysine exporter.
Probab=90.19 E-value=8.2 Score=31.72 Aligned_cols=64 Identities=9% Similarity=0.054 Sum_probs=45.9
Q ss_pred HHHHHccCCC-cEeehhHHHHHHHHHHHHHHHHhhhhcccCH--HHHHHHHHHHHHHHHHHHhhhcc
Q 027455 28 AAILAMRHPR-RLVLSGCLGALIVMTILSAVVGWVAPNLISR--KLTHHITTVLFFGFGLWSLWDAF 91 (223)
Q Consensus 28 ~~~LA~r~~~-~~V~~G~~~al~~~t~lav~~G~~l~~~lp~--~~i~~~ag~lFl~fG~~~l~~~~ 91 (223)
++.-+.|+++ ....+|...|..+...++++.-..+.+..|. .++++++++-.+.+|..++++..
T Consensus 12 vi~~~~~~~~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~~ 78 (177)
T TIGR00948 12 VLRQGIRREHVLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTAW 78 (177)
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555544 3588899999988888887777766666664 35777777777889999988753
No 34
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=89.05 E-value=18 Score=33.01 Aligned_cols=75 Identities=17% Similarity=0.299 Sum_probs=44.5
Q ss_pred hhccchHHHHHHHHHccCCC--cEeehhHHHHHHH--HHHHHHHHHhhhhcccC----HHHHHHHHHHHHHHHHHHHhhh
Q 027455 18 SEIGDKTFFAAAILAMRHPR--RLVLSGCLGALIV--MTILSAVVGWVAPNLIS----RKLTHHITTVLFFGFGLWSLWD 89 (223)
Q Consensus 18 aE~GDKTql~~~~LA~r~~~--~~V~~G~~~al~~--~t~lav~~G~~l~~~lp----~~~i~~~ag~lFl~fG~~~l~~ 89 (223)
.|-|----+++.-++++.++ ..+.+|...++.= .-.+.++++-.+.+.+| ..+...+++++-+.+|+|++|.
T Consensus 29 lgPGHGKavi~sYlv~~~~~~~~a~~lgl~~~l~hta~~lv~~~~~~~l~~~~~~~~~~~~le~~S~~lii~lGl~ll~r 108 (279)
T PRK10019 29 LEPGHSKTMMAAFIIAIKGTIKQAVMLGLAATISHTAVVWLIAFGGMYLSRRFTAQSAEPWLQLISAVIIISTAFWMFWR 108 (279)
T ss_pred cCCCcchHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35554444445555554333 3566666655442 22222223333455555 4688999999999999999987
Q ss_pred ccc
Q 027455 90 AFS 92 (223)
Q Consensus 90 ~~~ 92 (223)
.++
T Consensus 109 ~~r 111 (279)
T PRK10019 109 TWR 111 (279)
T ss_pred HHH
Confidence 653
No 35
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=85.25 E-value=10 Score=32.56 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=36.8
Q ss_pred EeehhHHHHHHHHHHHHHHHHhhhhccc--CHHHHHHHHHHHHHHHHHHHhhhc
Q 027455 39 LVLSGCLGALIVMTILSAVVGWVAPNLI--SRKLTHHITTVLFFGFGLWSLWDA 90 (223)
Q Consensus 39 ~V~~G~~~al~~~t~lav~~G~~l~~~l--p~~~i~~~ag~lFl~fG~~~l~~~ 90 (223)
...-.+..+.+++ ++..+.|+++-+++ +....+..+|++.+..|+.|+...
T Consensus 42 ia~~~~l~a~~il-l~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ml~~~ 94 (201)
T TIGR00427 42 IAKKANISSFIIL-LIFLVFGDTILKLFGISIDAFRIAGGILLFTIAMDMLSGE 94 (201)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444444444444 36677788877754 777899999999999999998653
No 36
>COG4280 Predicted membrane protein [Function unknown]
Probab=83.85 E-value=3 Score=36.60 Aligned_cols=58 Identities=17% Similarity=0.234 Sum_probs=49.2
Q ss_pred HHHHHHHHhcc--cCCcEeehHHHHHHHHHHHHHHHHhHHhhhhccHHHHHHH--HHHHHHHH
Q 027455 160 SQLATIGLAAD--ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVIMD--ICFFFFNT 218 (223)
Q Consensus 160 TQlati~LA~~--~~~~~V~~G~~~g~~l~t~laV~~G~~~~~~i~~~~i~~~--~lFl~fG~ 218 (223)
+..-+|+.+-. +++..-+.|+.+|+++.-.++..+|+.+. .+|.++++++ ++-+.||-
T Consensus 18 vEa~aIa~avg~~~~wr~al~ga~lglalvl~l~lvlGk~L~-lvPln~lqiv~gvLLllFG~ 79 (236)
T COG4280 18 VEAGAIAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLLY-LVPLNYLQIVSGVLLLLFGY 79 (236)
T ss_pred HHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHcccee-eeechHHHHHHHHHHHHHHH
Confidence 45667777744 56777899999999999999999999876 8999999999 88888884
No 37
>PRK11111 hypothetical protein; Provisional
Probab=83.25 E-value=17 Score=31.71 Aligned_cols=50 Identities=18% Similarity=0.184 Sum_probs=37.4
Q ss_pred eehhHHHHHHHHHHHHHHHHhhhhccc--CHHHHHHHHHHHHHHHHHHHhhhc
Q 027455 40 VLSGCLGALIVMTILSAVVGWVAPNLI--SRKLTHHITTVLFFGFGLWSLWDA 90 (223)
Q Consensus 40 V~~G~~~al~~~t~lav~~G~~l~~~l--p~~~i~~~ag~lFl~fG~~~l~~~ 90 (223)
.+-.+..+.++. .+..++|+++-+++ +....++.+|++.+.+|+.|++..
T Consensus 46 a~~a~l~a~~il-l~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~g~ 97 (214)
T PRK11111 46 NLTANLSVAIIL-LISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSMISGK 97 (214)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 444444444444 46788899988865 777899999999999999999654
No 38
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=82.70 E-value=6.4 Score=32.41 Aligned_cols=48 Identities=21% Similarity=0.400 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccCH---HHHHHHHHHHHHHHHHHHhhhc
Q 027455 43 GCLGALIVMTILSAVVGWVAPNLISR---KLTHHITTVLFFGFGLWSLWDA 90 (223)
Q Consensus 43 G~~~al~~~t~lav~~G~~l~~~lp~---~~i~~~ag~lFl~fG~~~l~~~ 90 (223)
|...+..+...+-...++.+.+++.. +++..++|++++.+|++.++++
T Consensus 141 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~li~~av~l~~~g 191 (191)
T PF01810_consen 141 GIFLGSLLWFLLLALLGSRLRRKFSSRRIRWINRISGLLLIGFAVYLLYSG 191 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44444444444444444444444433 3889999999999999998864
No 39
>PRK10739 putative antibiotic transporter; Provisional
Probab=81.10 E-value=35 Score=29.36 Aligned_cols=50 Identities=10% Similarity=0.157 Sum_probs=36.7
Q ss_pred eehhHHHHHHHHHHHHHHHHhhhhccc--CHHHHHHHHHHHHHHHHHHHhhhc
Q 027455 40 VLSGCLGALIVMTILSAVVGWVAPNLI--SRKLTHHITTVLFFGFGLWSLWDA 90 (223)
Q Consensus 40 V~~G~~~al~~~t~lav~~G~~l~~~l--p~~~i~~~ag~lFl~fG~~~l~~~ 90 (223)
.+-.+..+. +.-.+..++|+.+-+++ +....++.+|++.+.+|+.|+.+.
T Consensus 40 a~~a~~~a~-~ill~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ml~~~ 91 (197)
T PRK10739 40 MIRELLIAL-LVMLVFLFAGEKILAFLNLRTETVSISGGIILFLIAIKMIFPS 91 (197)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 333444444 44447778888887754 778899999999999999999654
No 40
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=78.94 E-value=3.3 Score=29.01 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHH
Q 027455 48 LIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFG 83 (223)
Q Consensus 48 l~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG 83 (223)
-.+++.++..+|+.+.+++ .++.+++++++++.+|
T Consensus 33 ~~~~~~~G~~~G~~~~~~~-~~~~~~igg~iLi~iG 67 (67)
T PF02659_consen 33 QFIMPLLGLLLGRRLGRFI-GSYAEWIGGIILIFIG 67 (67)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC
Confidence 4677888899999998855 4679999999998876
No 41
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=77.62 E-value=63 Score=32.08 Aligned_cols=48 Identities=13% Similarity=0.136 Sum_probs=37.7
Q ss_pred eehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHh
Q 027455 40 VLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSL 87 (223)
Q Consensus 40 V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l 87 (223)
-.+|..+.+.+..+++..+|..+...+-..++.+..+++|+++|+.++
T Consensus 215 y~lG~~~ty~~lG~~a~~~G~~~~~~~q~~~~~~~~~~l~v~lgL~~~ 262 (571)
T PRK00293 215 YVQGMALTYTLLGLVVAAAGLQFQAALQHPYVLIGLSILFVLLALSMF 262 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 357777777777788888888775555556888899999999999886
No 42
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=77.05 E-value=3.7 Score=35.45 Aligned_cols=46 Identities=15% Similarity=0.061 Sum_probs=38.2
Q ss_pred ehHHHHHHHHHHHHHHHHhHHhhhhccHHHHHHH--HHHHHHHHHhhh
Q 027455 177 VLGGIIGQALCTTAAVIGGKSLASQISEKIVIMD--ICFFFFNTTYQF 222 (223)
Q Consensus 177 ~~G~~~g~~l~t~laV~~G~~~~~~i~~~~i~~~--~lFl~fG~~~l~ 222 (223)
.+-..+-+.+++.++.+.|+.+.+.+|+++-+++ ++.+..|+++++
T Consensus 33 ~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 33 NLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 3333444568899999999999999999988888 899999999876
No 43
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=74.97 E-value=63 Score=29.01 Aligned_cols=179 Identities=18% Similarity=0.167 Sum_probs=94.5
Q ss_pred HHHHHHHHhhc---cchHHHHHHHHHccCC----CcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHH
Q 027455 10 KSLAMTVLSEI---GDKTFFAAAILAMRHP----RRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGF 82 (223)
Q Consensus 10 ~~f~~iflaE~---GDKTql~~~~LA~r~~----~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~f 82 (223)
.++..+.+-|. +|+-.+++++ +.+.+ ++..+.|...|++.=-++- ..|.++-+.- .+.-++-|..++.-
T Consensus 18 ~~l~tl~~lE~vL~iDN~iviai~-~~~Lp~~qr~ral~~Gl~~A~v~R~~ll-~~~s~Ll~l~--~~l~~~fg~~L~~~ 93 (254)
T COG0861 18 VALLTLILLEIVLGIDNAIVIAIL-ASKLPPKQRKKALFIGLAGALVLRIILL-ASISWLLTLT--QPLLYIFGLYLLWR 93 (254)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHH-HhhCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhh--HHHHHHHHHHHHHH
Confidence 56667777775 8988777654 33444 3578888888887655544 4455553432 22333356667777
Q ss_pred HHHHhhhcccCCCCchhHHHHHHhhhhhhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhh--ccchH
Q 027455 83 GLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGE--WGDKS 160 (223)
Q Consensus 83 G~~~l~~~~~~~~~~~e~~e~e~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~l~FlaE--~GDKT 160 (223)
++.+++++. +++.++..|-.++. +++... + +.+..+ ...|+.+...+-++- +.=-|
T Consensus 94 ~~~ll~~~~-----~~~~k~~~~~~~~~--~~~~~~-------~--~~~~~~------~~~f~~ai~~I~i~D~vFSlDS 151 (254)
T COG0861 94 DIKLLLGGL-----FLLFKATKELHERL--EGEEFF-------V--NGKLKK------ATPFWGAIIQIELADLVFSLDS 151 (254)
T ss_pred HHHHHhcch-----hHHHHHHHHHhhhh--cccccc-------c--cccccc------cCcHHHHHHHHHHHHHHHhhhH
Confidence 777777652 12222221111000 000000 0 000000 112333433332221 11135
Q ss_pred HHHHHHHhcccCCcEeehHHHHHHHHHHHHHHHHhHHhhhhccHHHHHHH-HHHHHH
Q 027455 161 QLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVIMD-ICFFFF 216 (223)
Q Consensus 161 Qlati~LA~~~~~~~V~~G~~~g~~l~t~laV~~G~~~~~~i~~~~i~~~-~lFl~f 216 (223)
=+|..+++ .+|+.+..|.+.+....-..+=.+.+++.++-..++.-.. +.|+++
T Consensus 152 V~Aa~g~~--~~~~im~~a~i~aI~~m~~aa~~l~~ll~r~p~l~~~~~~iL~~IG~ 206 (254)
T COG0861 152 VIAAVGMA--GHPFVMVTAVIFAILVMRFAAFLLARLLERHPTLKYLALVILLFIGV 206 (254)
T ss_pred HHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHH
Confidence 56666666 6788888999999888887777777777765444444444 444443
No 44
>COG0730 Predicted permeases [General function prediction only]
Probab=69.44 E-value=12 Score=32.53 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhcc
Q 027455 47 ALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAF 91 (223)
Q Consensus 47 al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~~ 91 (223)
.+.+.+.++..+|.++.+++|++.++.+-+.+.+..+++++++..
T Consensus 211 ~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~~~~~~~~~~~~~~~ 255 (258)
T COG0730 211 LLAVGSILGAYLGARLARRLSPKVLRRLFALVLLAVAIKLLLRGL 255 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788899999999999999999999999999999999999987653
No 45
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=69.37 E-value=53 Score=28.49 Aligned_cols=131 Identities=16% Similarity=0.102 Sum_probs=77.7
Q ss_pred eehhHHHHHHHHHHHHHHHHhhhhcc--cCHHHHHHHHHHHHHHHHHHHhhhcccCCCCchhHHHHHHhhhhhhhhccCc
Q 027455 40 VLSGCLGALIVMTILSAVVGWVAPNL--ISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGA 117 (223)
Q Consensus 40 V~~G~~~al~~~t~lav~~G~~l~~~--lp~~~i~~~ag~lFl~fG~~~l~~~~~~~~~~~e~~e~e~~i~~~~~~~~~~ 117 (223)
+.-.+..++.+ -.+..++|+.+-+. +|....+..+|++-...|+.|+....+..+.+.| |.+ ++ +
T Consensus 43 ~~ra~i~a~~i-ll~f~~~G~~il~~fgIsi~a~rIAGGilLf~ia~~ml~~~~~~~~~~~e--~~~---~~---~---- 109 (203)
T COG2095 43 ALRASIIALLI-LLVFLLLGEGILRFFGISIDAFRIAGGILLFLIALRMLFGPTSRPKKKRE--EGQ---ED---S---- 109 (203)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhCCchhHHHHhhhHHHHHHHHHHhcCCcCcCCCCcc--cCc---cC---C----
Confidence 44444444444 45566778887774 5888899999999999999999876432211100 000 00 0
Q ss_pred ccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhhccchHHHHHHHHhcccC-CcEeehHHHHHHHHHHHHHHHHhH
Q 027455 118 TKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADEN-PFGVVLGGIIGQALCTTAAVIGGK 196 (223)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~l~FlaE~GDKTQlati~LA~~~~-~~~V~~G~~~g~~l~t~laV~~G~ 196 (223)
. ..- |.- +--=-|+.|==+++.++.+++ +..+.+++++...+++.+.-....
T Consensus 110 i------------aiv--------PLA-------~PliaGPg~Ist~i~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~s~ 162 (203)
T COG2095 110 I------------AIV--------PLA-------IPLIAGPGTIATVIVLSSQYGNSKLAVVLAILLASLLTYLILLSSS 162 (203)
T ss_pred e------------eee--------ccc-------CccccCcHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000 000 000015555556666776654 355667777777777888888888
Q ss_pred HhhhhccHHHHHHH
Q 027455 197 SLASQISEKIVIMD 210 (223)
Q Consensus 197 ~~~~~i~~~~i~~~ 210 (223)
.+.|++-..-++.+
T Consensus 163 ~i~r~lG~~G~~~~ 176 (203)
T COG2095 163 RIMRLLGKTGLNAL 176 (203)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877666555
No 46
>COG1971 Predicted membrane protein [Function unknown]
Probab=69.35 E-value=11 Score=32.48 Aligned_cols=41 Identities=17% Similarity=0.441 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhcc
Q 027455 50 VMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAF 91 (223)
Q Consensus 50 ~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~~ 91 (223)
.++.++..+|+.+.+++ .++..+++|++.+.+|.+.+++.+
T Consensus 148 il~~~G~~IG~~~g~~~-g~~ae~lgGiiLI~~G~~iL~~~~ 188 (190)
T COG1971 148 ILSALGAIIGRKLGKFL-GKYAEILGGIILIGIGVKILLEHL 188 (190)
T ss_pred HHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555555554444 468899999999999999999864
No 47
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=66.20 E-value=18 Score=30.67 Aligned_cols=46 Identities=22% Similarity=0.127 Sum_probs=38.1
Q ss_pred ehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHH
Q 027455 41 LSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWS 86 (223)
Q Consensus 41 ~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~ 86 (223)
.+...+.+...+.++..+|+++.+++|+++.+.+...+.+..|+.+
T Consensus 195 ~~~~~~~~~~~~~~G~~lG~~~~~~i~~~~~~~~~~~ll~~~~~~l 240 (240)
T PF01925_consen 195 MLLLSLILLPGAFLGAFLGAKLARKIPQKVFRRIFLILLLLSGLKL 240 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 4455556788899999999999999999999999988888887653
No 48
>PRK10621 hypothetical protein; Provisional
Probab=64.27 E-value=16 Score=32.19 Aligned_cols=47 Identities=17% Similarity=0.072 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhcc
Q 027455 45 LGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAF 91 (223)
Q Consensus 45 ~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~~ 91 (223)
.+.+...+.++..+|..+.+++|++..+++...+-++.|++++++.+
T Consensus 209 ~l~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~ll~~~~i~~~~~~~ 255 (266)
T PRK10621 209 GFVMLVGQFLGARLGARLVLSKGQKLIRPMIVIVSAVMSAKLLYDSH 255 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHhHHHHHHHHHHHHHHHHHHHH
Confidence 34466778899999999999999999999999999999999998765
No 49
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=64.10 E-value=1.2e+02 Score=28.07 Aligned_cols=75 Identities=23% Similarity=0.385 Sum_probs=49.2
Q ss_pred hhcc-chHHHHHHHHHccCC-CcEeehhHHHHHHH--------HHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHh
Q 027455 18 SEIG-DKTFFAAAILAMRHP-RRLVLSGCLGALIV--------MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSL 87 (223)
Q Consensus 18 aE~G-DKTql~~~~LA~r~~-~~~V~~G~~~al~~--------~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l 87 (223)
.|-| .|+-+++-..+.+-+ +..+.++-..++.= .-...|+-+.-+.-...+.|...++.++-+.+|+|++
T Consensus 70 lgPGHgKaviasylia~~~~lk~~ilLsf~~sllqG~~Av~l~~~~~~v~~~~s~~~~~s~~~lE~~S~~Ll~~~G~w~~ 149 (303)
T COG2215 70 LGPGHGKAVIATYLIAHKATLKRAILLSFLASLLQGLTAVVLLLAFLGVLRLSSITFALSEPWLELISFLLLILLGLWLL 149 (303)
T ss_pred cCCCcchHHHHHHHHhcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444 377777777776655 33566655444321 2223334444455566788999999999999999999
Q ss_pred hhccc
Q 027455 88 WDAFS 92 (223)
Q Consensus 88 ~~~~~ 92 (223)
|+.++
T Consensus 150 ~r~lr 154 (303)
T COG2215 150 WRTLR 154 (303)
T ss_pred HHHHH
Confidence 98754
No 50
>PRK11469 hypothetical protein; Provisional
Probab=62.61 E-value=18 Score=30.77 Aligned_cols=41 Identities=27% Similarity=0.565 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhcc
Q 027455 50 VMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAF 91 (223)
Q Consensus 50 ~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~~ 91 (223)
+++..++.+|+.+++++ .++..+++|++.++.|++++.+.+
T Consensus 146 ~~~~~G~~lG~~~g~~~-g~~a~~lgG~iLI~iGi~il~~h~ 186 (188)
T PRK11469 146 IMSTLGMMVGRFIGSII-GKKAEILGGLVLIGIGVQILWTHF 186 (188)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444555555555433 456788999999999999998764
No 51
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=61.34 E-value=1e+02 Score=26.16 Aligned_cols=52 Identities=10% Similarity=0.004 Sum_probs=40.3
Q ss_pred EeehhHHHHHHHHHHHHHHHHhhhhccc------CHHHHHHHHHHHHHHHHHHHhhhc
Q 027455 39 LVLSGCLGALIVMTILSAVVGWVAPNLI------SRKLTHHITTVLFFGFGLWSLWDA 90 (223)
Q Consensus 39 ~V~~G~~~al~~~t~lav~~G~~l~~~l------p~~~i~~~ag~lFl~fG~~~l~~~ 90 (223)
..+.|...+.....+......+.+.... ...+++++.|++++.+|++..+..
T Consensus 33 af~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lGv~ll~~a~~~~~~~ 90 (214)
T PF11139_consen 33 AFLAGWFLGYLAVGLVLLFGLDALPSGSSSAPSPVVGWLQLVLGVLLLLLAVRVWRRR 90 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccCCccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4677888888888888877777776433 345789999999999999887665
No 52
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=60.11 E-value=1.6e+02 Score=28.09 Aligned_cols=51 Identities=24% Similarity=0.184 Sum_probs=28.0
Q ss_pred HHHHHHccCCCcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHH
Q 027455 27 AAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTV 77 (223)
Q Consensus 27 ~~~~LA~r~~~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~ 77 (223)
+++-+.-.+++..-..-...++.+.+++++=+|.++++.+-=|..-++.+.
T Consensus 125 ~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~ 175 (394)
T COG2814 125 LAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAV 175 (394)
T ss_pred HHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHH
Confidence 334444444444444445555666666677777777776655555444433
No 53
>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region
Probab=57.78 E-value=1.1e+02 Score=25.54 Aligned_cols=49 Identities=16% Similarity=-0.006 Sum_probs=31.1
Q ss_pred eehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHH----HHHHhh
Q 027455 40 VLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGF----GLWSLW 88 (223)
Q Consensus 40 V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~f----G~~~l~ 88 (223)
-.+|=..+..+.-+++..+|+.+.+....+.++...+++...+ |++.++
T Consensus 38 y~~GRi~sY~llG~l~g~~G~~l~~~~~~~~l~~~~~~~~~~~~l~~gl~~l~ 90 (199)
T PF13386_consen 38 YNLGRILSYTLLGALAGLLGSGLSLSGWLPGLRRIIGILLGLLGLFLGLRLLG 90 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677778888888888888876554445555554444444 555554
No 54
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=56.47 E-value=1.3e+02 Score=25.73 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHH
Q 027455 48 LIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGL 84 (223)
Q Consensus 48 l~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~ 84 (223)
..+...++-.++.++.+..+-++.-++.+++.++..+
T Consensus 130 ~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~i 166 (352)
T PF07690_consen 130 FSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAI 166 (352)
T ss_dssp HHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHH
T ss_pred hhhhhhcccchhhhhhhccccccccccccchhhhhhh
Confidence 3344455555666666666666677777777766655
No 55
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=54.57 E-value=79 Score=24.19 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=33.1
Q ss_pred eehhHHHHHHHHHHHHHHHHhhhhc--ccCHHHHHHHHHHHHHHHHHHHhhhc
Q 027455 40 VLSGCLGALIVMTILSAVVGWVAPN--LISRKLTHHITTVLFFGFGLWSLWDA 90 (223)
Q Consensus 40 V~~G~~~al~~~t~lav~~G~~l~~--~lp~~~i~~~ag~lFl~fG~~~l~~~ 90 (223)
..++...+++..-.+.+.+..++.. .+|+.+.-.+.+.++++.+...++-+
T Consensus 41 ~~~a~vl~~~~l~~l~~al~~~l~~~~~~~~~~a~liv~~~~l~la~i~~~~~ 93 (121)
T PF07332_consen 41 LVLAAVLALLALLFLLVALVFALWEALGLPPWLAFLIVAGLYLLLALILLLIG 93 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555666666666633 34777778888888888887766543
No 56
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=54.39 E-value=18 Score=27.53 Aligned_cols=41 Identities=17% Similarity=0.365 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-cc---cCCCCchhHHHHHHhhhh
Q 027455 69 KLTHHITTVLFFGFGLWSLWD-AF---SDGGEAEEFEEVEKKLDA 109 (223)
Q Consensus 69 ~~i~~~ag~lFl~fG~~~l~~-~~---~~~~~~~e~~e~e~~i~~ 109 (223)
+.+.++=-.+-+.||++.+.. ++ .=+|.+|+.+|.++||++
T Consensus 35 ~ii~~lP~~~Lv~fG~Ysl~~lgy~v~tFnDcpeA~~eL~~eI~e 79 (91)
T PF08285_consen 35 EIIPYLPFYALVSFGCYSLFTLGYGVATFNDCPEAAKELQKEIKE 79 (91)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH
Confidence 345555556667778777643 22 235667777777777754
No 57
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=53.23 E-value=43 Score=28.83 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=39.7
Q ss_pred CCcEeehHHHHHHHHHHHHHHHHhHHhhhhccHHHH-HHH-HHHHHHHHHhhh
Q 027455 172 NPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIV-IMD-ICFFFFNTTYQF 222 (223)
Q Consensus 172 ~~~~V~~G~~~g~~l~t~laV~~G~~~~~~i~~~~i-~~~-~lFl~fG~~~l~ 222 (223)
+++.|++|-.+|..+--..+++++..+. .+|++|+ .+. .+=+.+|++.++
T Consensus 24 ~~~~I~~GqylG~~~Lv~~Sl~~~~~l~-~ip~~wiLGlLGliPI~lGi~~l~ 75 (191)
T PF03596_consen 24 RRRQIVIGQYLGFTILVLASLLGAFGLL-FIPPEWILGLLGLIPIYLGIKALF 75 (191)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999888777777666644 9999999 766 777888887554
No 58
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=53.07 E-value=47 Score=28.77 Aligned_cols=52 Identities=12% Similarity=0.159 Sum_probs=39.7
Q ss_pred ccCCcEeehHHHHHHHHHHHHHHHHhHHhhhhccHHHH-HHH-HHHHHHHHHhhh
Q 027455 170 DENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIV-IMD-ICFFFFNTTYQF 222 (223)
Q Consensus 170 ~~~~~~V~~G~~~g~~l~t~laV~~G~~~~~~i~~~~i-~~~-~lFl~fG~~~l~ 222 (223)
+++++.+.+|-.+|...--..++.++.- ...+|++|+ .+. .+=+.+|++.++
T Consensus 21 ~~~~~~IviGqylGf~~Lv~~Sl~~a~g-l~~iP~~wIlGlLGliPI~lGi~~l~ 74 (193)
T TIGR00779 21 RKEYKDIYIGQYLGSIILILVSLLLAFG-VNLIPEKWVLGLLGLIPIYLGIKVAI 74 (193)
T ss_pred CCCeeEEEEeHHHHHHHHHHHHHHHHHH-HHhCCHHHHHhHHhHHHHHHHHHHHh
Confidence 4678999999999987776666664444 469999999 777 777778876553
No 59
>PRK00259 intracellular septation protein A; Reviewed
Probab=48.42 E-value=55 Score=27.81 Aligned_cols=47 Identities=23% Similarity=0.385 Sum_probs=38.7
Q ss_pred ehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhh
Q 027455 41 LSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWD 89 (223)
Q Consensus 41 ~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~ 89 (223)
...++.++++.+++++....+..+++|.. ++++.++-++||..+++-
T Consensus 22 i~~AT~~~i~a~~~~~~~~~~~~~~v~~m--~~i~~~lv~vfGglTl~l 68 (179)
T PRK00259 22 IYAATAALIVATVIQLAISWIRYRKVEKM--QLISLVVVVVFGGLTLVF 68 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcchh--HHHHHHHHHHHHHHHHHh
Confidence 45567778888999999999988877764 889999999999998863
No 60
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=46.64 E-value=2.1e+02 Score=25.35 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhhhhcccCHHHH---HHHHHHHHHHHHHHHhhhcccC---------CCCchhHHHHHHhhhhhhhhccC
Q 027455 49 IVMTILSAVVGWVAPNLISRKLT---HHITTVLFFGFGLWSLWDAFSD---------GGEAEEFEEVEKKLDADFKANAG 116 (223)
Q Consensus 49 ~~~t~lav~~G~~l~~~lp~~~i---~~~ag~lFl~fG~~~l~~~~~~---------~~~~~e~~e~e~~i~~~~~~~~~ 116 (223)
.+.-+++-++|.++.+++|+++. ....|+.=+..|+.+..+.... ..--.|.=+.|+.+++-.+.-+.
T Consensus 8 ~~aIl~G~~iG~~~~~~i~~~~~~~l~~~~Gl~~l~iGi~~~~~~~~~~~vi~slvlG~iiGe~l~ie~~l~~l~~~l~~ 87 (226)
T PF04474_consen 8 ALAILLGGLIGLLLGRRIPERIKDTLMQALGLCVLAIGISMALKGQNPLLVILSLVLGTIIGELLDIEDRLERLGEKLEK 87 (226)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666777888998874 4455666667777776654110 00001222223333222111110
Q ss_pred cccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhhc-----------cchHHH---------HHHHHhcccCCcEe
Q 027455 117 ATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEW-----------GDKSQL---------ATIGLAADENPFGV 176 (223)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~l~FlaE~-----------GDKTQl---------ati~LA~~~~~~~V 176 (223)
+..++.-...+.+.|.++.+++=..-+ ||-|.+ +++.+|+.+. ++|
T Consensus 88 -------------k~~~~~~~~~f~~gFvtasllfCvG~m~I~Gsi~~Gl~gd~siL~~KsiLDg~taiifaaslG-~gV 153 (226)
T PF04474_consen 88 -------------KFGKSGGDSSFAEGFVTASLLFCVGAMAILGSIQDGLTGDPSILLTKSILDGFTAIIFAASLG-IGV 153 (226)
T ss_pred -------------HccCCCCcccHHHHHHHHHHHHHcchhHHHhHHHhHhcCChHHHHHHHHHHHHHHHHHHHHcC-chH
Confidence 000000011134556666654433322 787775 4577777765 344
Q ss_pred ehHHHHHHHHHHHHHHHHhHHhhhhccHHHHHHH-----HHHHHHHHH
Q 027455 177 VLGGIIGQALCTTAAVIGGKSLASQISEKIVIMD-----ICFFFFNTT 219 (223)
Q Consensus 177 ~~G~~~g~~l~t~laV~~G~~~~~~i~~~~i~~~-----~lFl~fG~~ 219 (223)
..-+.--.+.-..+. +++++++..+++..+.-+ ++-++.|+-
T Consensus 154 ~~saipv~iyQg~l~-llA~~l~~~ls~~~i~~~savGGili~~iGln 200 (226)
T PF04474_consen 154 AFSAIPVFIYQGSLT-LLAGFLAPLLSPAMINEISAVGGILILAIGLN 200 (226)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444 556777788888888655 555555543
No 61
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=45.43 E-value=1e+02 Score=27.69 Aligned_cols=46 Identities=9% Similarity=0.121 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhcc--------cCHHHHHHHHHHHHHHHHHHHh
Q 027455 42 SGCLGALIVMTILSAVVGWVAPNL--------ISRKLTHHITTVLFFGFGLWSL 87 (223)
Q Consensus 42 ~G~~~al~~~t~lav~~G~~l~~~--------lp~~~i~~~ag~lFl~fG~~~l 87 (223)
+|-.+|+.+.+...++.|...+++ .|.+-.--..|+.+.++|...+
T Consensus 79 iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f 132 (254)
T PF07857_consen 79 IGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIF 132 (254)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHhe
Confidence 788899999999999999887654 2333333334555556665443
No 62
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=45.08 E-value=67 Score=27.34 Aligned_cols=48 Identities=25% Similarity=0.243 Sum_probs=38.0
Q ss_pred ehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhc
Q 027455 41 LSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA 90 (223)
Q Consensus 41 ~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~ 90 (223)
..=++.++++.+++++....+..+++| ..+++++++-++||..+++-.
T Consensus 22 I~~AT~~~~vat~~~~~~~~~~~~~v~--~m~~is~~lv~vFGglTl~~~ 69 (178)
T TIGR00997 22 IFAATIALLVATIIAIGLSYVKYKKVE--KMQWISFVLIVVFGGLTLIFH 69 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHHHHHHHhC
Confidence 334566778889999999888888665 468899999999999988753
No 63
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=44.97 E-value=1.3e+02 Score=27.48 Aligned_cols=71 Identities=15% Similarity=0.139 Sum_probs=44.2
Q ss_pred HHHHhhccchHHHHHHHHHccCCCcEeehhHHHHHHHHHHHHHHHHhhhhccc--CHHHHH---HHHHHHHHHHHHHHhh
Q 027455 14 MTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLI--SRKLTH---HITTVLFFGFGLWSLW 88 (223)
Q Consensus 14 ~iflaE~GDKTql~~~~LA~r~~~~~V~~G~~~al~~~t~lav~~G~~l~~~l--p~~~i~---~~ag~lFl~fG~~~l~ 88 (223)
+++..-+|+=+.=+...+++- +|..+.+.+..++.+.-.+...++. ..++.+ ++++++=+++|+++.|
T Consensus 199 LL~a~~lg~~~~Gi~~vlafs-------lGtaltm~~vgll~~~~~r~~~~~~~~~~~~~~~~p~~s~~l~i~~G~~~~~ 271 (279)
T PRK10019 199 LLICIQLKALTLGATLVLSFS-------IGLALTLVTVGVGAAISVQQAAKRWSGFNTLARRAPYFSSLLIGLVGVYMGV 271 (279)
T ss_pred HHHHHHhchHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333 4666666666666654444444444 455666 9999999999999999
Q ss_pred hcc
Q 027455 89 DAF 91 (223)
Q Consensus 89 ~~~ 91 (223)
+.+
T Consensus 272 ~~~ 274 (279)
T PRK10019 272 HGF 274 (279)
T ss_pred HHH
Confidence 864
No 64
>PRK09304 arginine exporter protein; Provisional
Probab=44.94 E-value=52 Score=27.80 Aligned_cols=43 Identities=5% Similarity=0.018 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhhhccc--C--HHHHHHHHHHHHHHHHHHHhhhcc
Q 027455 49 IVMTILSAVVGWVAPNLI--S--RKLTHHITTVLFFGFGLWSLWDAF 91 (223)
Q Consensus 49 ~~~t~lav~~G~~l~~~l--p--~~~i~~~ag~lFl~fG~~~l~~~~ 91 (223)
..+...-+.+++.+.+++ | .+++++++|++++.+|++.+.++.
T Consensus 157 ~~~~~~~a~~~~~~~~~~~~~~~~~~in~~~g~~l~~~~~~l~~~~~ 203 (207)
T PRK09304 157 FLWFFGLALLAAWLAPRLRTAKAQRIINLFVGCVMWFIALQLARQGI 203 (207)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444444555554444 2 257789999999999999998764
No 65
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=44.39 E-value=64 Score=27.30 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=45.8
Q ss_pred HHHHHHccCCCcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhh
Q 027455 27 AAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWD 89 (223)
Q Consensus 27 ~~~~LA~r~~~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~ 89 (223)
+++.++ .+.+.++.|...+...+-..+-.+.+++.++ .++++.++.+-...|+.++.+
T Consensus 126 a~~~it--~~~~iv~~g~i~si~~m~~~~~~~~~~l~~~---p~l~~~~~~~L~~ig~~li~~ 183 (183)
T PF03741_consen 126 AAVGIT--DDFFIVITGNIISILLMRFLSFLLAKLLERF---PYLKYLAAAILGFIGVKLILE 183 (183)
T ss_pred HHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhC
Confidence 344444 4567899999999999999999999988664 578888888888888887753
No 66
>PF13347 MFS_2: MFS/sugar transport protein
Probab=44.18 E-value=2.5e+02 Score=25.63 Aligned_cols=28 Identities=11% Similarity=-0.082 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhHHhhhhccHHHHHHH
Q 027455 183 GQALCTTAAVIGGKSLASQISEKIVIMD 210 (223)
Q Consensus 183 g~~l~t~laV~~G~~~~~~i~~~~i~~~ 210 (223)
...+++.++..+...+.+|+..+..-..
T Consensus 268 ~~~~~~~v~~~~~~~l~~r~gk~~~~~~ 295 (428)
T PF13347_consen 268 IFFVASIVGSPLWGRLSKRFGKKKVYII 295 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHccceeehhh
Confidence 3455566666777778888877776555
No 67
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=43.58 E-value=41 Score=26.14 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhHHhhhhccHHHHHHHHHHHHHHH
Q 027455 183 GQALCTTAAVIGGKSLASQISEKIVIMDICFFFFNT 218 (223)
Q Consensus 183 g~~l~t~laV~~G~~~~~~i~~~~i~~~~lFl~fG~ 218 (223)
.+++.+.+++++|.++=++.|.+. .+.+.|+++|+
T Consensus 51 ~~v~pil~G~~lG~WLD~~~~t~~-~~tl~~lllGv 85 (100)
T TIGR02230 51 SVAIPTLLGVAVGIWLDRHYPSPF-SWTLTMLIVGV 85 (100)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCc-HHHHHHHHHHH
Confidence 456778889999999999998755 22244555544
No 68
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=42.42 E-value=2.8e+02 Score=25.54 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=19.4
Q ss_pred cEeehHHHHHHHHHHHHHHHHhHHhhhhc
Q 027455 174 FGVVLGGIIGQALCTTAAVIGGKSLASQI 202 (223)
Q Consensus 174 ~~V~~G~~~g~~l~t~laV~~G~~~~~~i 202 (223)
.++.+|+-+|-.+-..++-+.++.-+||+
T Consensus 209 ~~lvlGaNiGT~~ta~las~g~~~~arr~ 237 (307)
T TIGR00704 209 LCLVLGSNLGSGILAMLAASAANAAARRV 237 (307)
T ss_pred HHHHHhcchhHHHHHHHHHccCchhHHHH
Confidence 45667777777777777776666555554
No 69
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=42.17 E-value=72 Score=27.17 Aligned_cols=47 Identities=13% Similarity=0.079 Sum_probs=35.3
Q ss_pred ehHHHHHHHHHHHHHHHHhHHhhhhccHHHHHHHHHHHHHHHHhhhC
Q 027455 177 VLGGIIGQALCTTAAVIGGKSLASQISEKIVIMDICFFFFNTTYQFF 223 (223)
Q Consensus 177 ~~G~~~g~~l~t~laV~~G~~~~~~i~~~~i~~~~lFl~fG~~~l~~ 223 (223)
+.=++.+.+.++.+++.......+|+|....-..++=++||..++++
T Consensus 22 I~~AT~~~~vat~~~~~~~~~~~~~v~~m~~is~~lv~vFGglTl~~ 68 (178)
T TIGR00997 22 IFAATIALLVATIIAIGLSYVKYKKVEKMQWISFVLIVVFGGLTLIF 68 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHh
Confidence 44566778889999999999999988876554446667778777763
No 70
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=41.93 E-value=58 Score=22.52 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhHHhhhhccHHHHHHH--HHHHHHH
Q 027455 183 GQALCTTAAVIGGKSLASQISEKIVIMD--ICFFFFN 217 (223)
Q Consensus 183 g~~l~t~laV~~G~~~~~~i~~~~i~~~--~lFl~fG 217 (223)
-..+.+.++...|+.+.++++ ++.+++ ++++.+|
T Consensus 32 ~~~~~~~~G~~~G~~~~~~~~-~~~~~igg~iLi~iG 67 (67)
T PF02659_consen 32 FQFIMPLLGLLLGRRLGRFIG-SYAEWIGGIILIFIG 67 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC
Confidence 356677788888888888555 556666 5555443
No 71
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=40.96 E-value=2.6e+02 Score=25.95 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhccH
Q 027455 179 GGIIGQALCTTAAVIGGKSLASQISE 204 (223)
Q Consensus 179 G~~~g~~l~t~laV~~G~~~~~~i~~ 204 (223)
|+..++.+.+.++.+..-.+.|-=|.
T Consensus 122 ~tlv~lgig~i~Ali~a~~itk~~~~ 147 (308)
T PF06166_consen 122 GTLVGLGIGAIVALIVALIITKPKPK 147 (308)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCChh
Confidence 66777777777777777666554343
No 72
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=40.72 E-value=1e+02 Score=27.66 Aligned_cols=63 Identities=17% Similarity=0.284 Sum_probs=38.9
Q ss_pred HHHHHHHccCCCc----EeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhh
Q 027455 26 FAAAILAMRHPRR----LVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLW 88 (223)
Q Consensus 26 l~~~~LA~r~~~~----~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~ 88 (223)
++++.++.+++|. .++.|..++++-.....+.-.-.-...+|+-+.-|+.-++|+++|.+.++
T Consensus 287 lla~~l~~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~l~p~~a~w~p~ii~~~~~~~l~~ 353 (354)
T PF03739_consen 287 LLALPLGIRFPRSGRISSLFIALLLGFLYYILFSFFSSLGENGNLPPFIAAWLPNIIFLILGLYLLR 353 (354)
T ss_pred HHHHHHhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 4567778887653 24444444444222222222122234789999999999999999998875
No 73
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=40.68 E-value=81 Score=26.41 Aligned_cols=32 Identities=9% Similarity=0.197 Sum_probs=22.4
Q ss_pred HHHhhhhccc--CHHHHHHHHHHHHHHHHHHHhh
Q 027455 57 VVGWVAPNLI--SRKLTHHITTVLFFGFGLWSLW 88 (223)
Q Consensus 57 ~~G~~l~~~l--p~~~i~~~ag~lFl~fG~~~l~ 88 (223)
..|+.+.+.+ ..++++++.|.+|+.+|+++.|
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~g~~l~~~a~~l~~ 195 (195)
T PRK10323 162 LAGHLFQRLFRQYGRQLNIVLALLLVYCAVRIFY 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444443333 3467899999999999998765
No 74
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=40.23 E-value=2.4e+02 Score=24.11 Aligned_cols=33 Identities=18% Similarity=0.104 Sum_probs=17.0
Q ss_pred HHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHH
Q 027455 53 ILSAVVGWVAPNLISRKLTHHITTVLFFGFGLW 85 (223)
Q Consensus 53 ~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~ 85 (223)
.++..++.++.+..+-++.-++.++.+++..+.
T Consensus 142 ~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~ 174 (365)
T TIGR00900 142 IVGPGIGGLMYATLGIKWAIWVDAVGFAISALL 174 (365)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344444444445555566666666655544433
No 75
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=36.67 E-value=1.7e+02 Score=23.74 Aligned_cols=17 Identities=47% Similarity=0.763 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027455 69 KLTHHITTVLFFGFGLW 85 (223)
Q Consensus 69 ~~i~~~ag~lFl~fG~~ 85 (223)
+++++++|++++++|++
T Consensus 168 ~~in~~~g~~l~~~~v~ 184 (185)
T TIGR00949 168 KWIDGITGALFVGFGIR 184 (185)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 56788999999999975
No 76
>PRK00259 intracellular septation protein A; Reviewed
Probab=36.56 E-value=1e+02 Score=26.17 Aligned_cols=46 Identities=7% Similarity=0.000 Sum_probs=35.7
Q ss_pred ehHHHHHHHHHHHHHHHHhHHhhhhccHHHHHHHHHHHHHHHHhhh
Q 027455 177 VLGGIIGQALCTTAAVIGGKSLASQISEKIVIMDICFFFFNTTYQF 222 (223)
Q Consensus 177 ~~G~~~g~~l~t~laV~~G~~~~~~i~~~~i~~~~lFl~fG~~~l~ 222 (223)
+..++.+.+.++.+++....+..+++|....-..++-++||..+++
T Consensus 22 i~~AT~~~i~a~~~~~~~~~~~~~~v~~m~~i~~~lv~vfGglTl~ 67 (179)
T PRK00259 22 IYAATAALIVATVIQLAISWIRYRKVEKMQLISLVVVVVFGGLTLV 67 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHH
Confidence 5667788889999999999999998887733333777778887775
No 77
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=36.12 E-value=2.9e+02 Score=24.04 Aligned_cols=13 Identities=23% Similarity=0.102 Sum_probs=6.1
Q ss_pred HHHHHHHHHhHHh
Q 027455 186 LCTTAAVIGGKSL 198 (223)
Q Consensus 186 l~t~laV~~G~~~ 198 (223)
++-.+.+..+...
T Consensus 140 v~~i~~i~~~~~~ 152 (248)
T PF11368_consen 140 VLLILTIILQKFL 152 (248)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444455443
No 78
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=35.57 E-value=1.3e+02 Score=25.21 Aligned_cols=53 Identities=11% Similarity=-0.039 Sum_probs=40.9
Q ss_pred cCCCcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhh
Q 027455 34 RHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWD 89 (223)
Q Consensus 34 r~~~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~ 89 (223)
+.+.+.++.|..++..++-.-|-.+.+++.++ .++++.+...-...|+.++.+
T Consensus 123 ~~~~~li~~g~~i~i~~m~~~s~~~~~~~~~~---p~l~~~~~~~L~~ig~kl~~~ 175 (176)
T TIGR03717 123 HGHLGLLIFGLLLSIPIIVWGSTLILKLMDRF---PWIIYIGAALLGYVAGEMIVT 175 (176)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcC
Confidence 33456788899888888888888777777553 477888888888889988763
No 79
>PRK15071 lipopolysaccharide ABC transporter permease; Provisional
Probab=35.23 E-value=3e+02 Score=24.90 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=38.8
Q ss_pred HHHHHHHccCCCc-E----eehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhh
Q 027455 26 FAAAILAMRHPRR-L----VLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWD 89 (223)
Q Consensus 26 l~~~~LA~r~~~~-~----V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~ 89 (223)
++++.++.+.+|. . +.+|..++++--.+..+.----....+|+...-|+--++|+..|++.++.
T Consensus 286 lla~~~~~~~~R~~~~~~~i~~~i~~~~~y~~~~~~~~~lg~~g~l~P~laaw~P~iif~~~~~~ll~r 354 (356)
T PRK15071 286 LMALSFIFGPLRSVTMGARVVTGISFGFVFYVSNEIFGPLSLVYGIPPIIGALLPSLLFLGISLYLLRR 354 (356)
T ss_pred HHHHHHhcCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhh
Confidence 6667777765442 2 34444444333222222211112467999999999999999999998864
No 80
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=34.63 E-value=1.4e+02 Score=25.61 Aligned_cols=71 Identities=10% Similarity=0.115 Sum_probs=53.0
Q ss_pred cchHHHHHHHHHccCCCc---EeehhHHHHHHHHHHHHHHHHhhhhcccCH---HHHHHHHHHHHHHHHHHHhhhcc
Q 027455 21 GDKTFFAAAILAMRHPRR---LVLSGCLGALIVMTILSAVVGWVAPNLISR---KLTHHITTVLFFGFGLWSLWDAF 91 (223)
Q Consensus 21 GDKTql~~~~LA~r~~~~---~V~~G~~~al~~~t~lav~~G~~l~~~lp~---~~i~~~ag~lFl~fG~~~l~~~~ 91 (223)
|.-|-=+.+.++++++.+ .+..++.....+.+.+.-..++++.+++.+ +.+.++.|++-..+|+-++.++.
T Consensus 123 GPG~It~vi~~~~~~~~~~~~~~~~~ai~~~~~~~~l~l~~a~~i~~~lG~~g~~vi~Ri~Glil~aiavq~i~~Gl 199 (203)
T PF01914_consen 123 GPGTITTVIVLSAEAGSLQSLLIVLIAILLVALITYLILRFADKIMRRLGKTGLQVITRIMGLILAAIAVQMILSGL 199 (203)
T ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555677788888753 456666666666777777778888887764 45788999999999999998875
No 81
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=34.57 E-value=1.2e+02 Score=26.57 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=46.5
Q ss_pred HccCCCcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhcc
Q 027455 32 AMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAF 91 (223)
Q Consensus 32 A~r~~~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~~ 91 (223)
+...+++.++.|...+...+-..+-.+.+++.++ .++++.+...-...|+.++.+++
T Consensus 119 git~~~~ii~~g~~~sIl~lr~~s~~l~~li~r~---p~L~~~~~~iL~~ig~kLil~~~ 175 (215)
T TIGR03716 119 ALSGQFWVVFLGGIIGILIMRFAATIFVKLLERF---PELETAAFLLIGWIGVKLLLETL 175 (215)
T ss_pred HhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567899999999999999998888887554 47888888888899999999864
No 82
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=34.51 E-value=2e+02 Score=26.53 Aligned_cols=59 Identities=17% Similarity=0.168 Sum_probs=46.4
Q ss_pred HHHHccCCCcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhc
Q 027455 29 AILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA 90 (223)
Q Consensus 29 ~~LA~r~~~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~ 90 (223)
++.|...+++.|+.+...|....-.+--++.+.+.++ .++++.++.+-...|++|+.++
T Consensus 212 Ai~aiT~d~~iV~tsnifaIlgLR~lyf~l~~ll~rf---~~L~~~~a~iL~fIGvkmll~~ 270 (302)
T TIGR03718 212 AIFAITQDPFIVFTSNIFAILGLRSLYFLLAGLLERF---HYLKYGLAVILVFIGVKMLLHA 270 (302)
T ss_pred HHHHhhcCCeEEehHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHhh
Confidence 4455556788999999988887777776677777553 5789999999999999999865
No 83
>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]
Probab=34.31 E-value=1.7e+02 Score=28.28 Aligned_cols=30 Identities=27% Similarity=0.425 Sum_probs=18.6
Q ss_pred cEeehHHHHHHHHHHHH-HHHHhHHhhhhcc
Q 027455 174 FGVVLGGIIGQALCTTA-AVIGGKSLASQIS 203 (223)
Q Consensus 174 ~~V~~G~~~g~~l~t~l-aV~~G~~~~~~i~ 203 (223)
.+|.+|+.+...+--.+ .|+.|+.+...+.
T Consensus 357 lgVaigsalQI~Lf~vP~~v~v~W~~g~~M~ 387 (441)
T KOG1397|consen 357 LGVAIGSALQIALFVVPFSVIVGWIMGISMD 387 (441)
T ss_pred hhhhhhhhHhHHHhhhhHHHHhhhhcCCceE
Confidence 56777887776654443 5566776665443
No 84
>PRK00944 hypothetical protein; Provisional
Probab=34.18 E-value=1.1e+02 Score=26.51 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=43.4
Q ss_pred eehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhccc
Q 027455 40 VLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS 92 (223)
Q Consensus 40 V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~~~ 92 (223)
=..|.....-++..++.++|-++++++|. ++....++.|=.+..++++|.+.
T Consensus 124 dY~GDSVlNSv~D~~~M~~GF~~A~rlPv-~vtv~lai~fEl~~~~~IRDnLt 175 (195)
T PRK00944 124 DYYGDSILNSVMDTLAMVLGFLFAARLPV-WLTVAIAIFFEIFTGWLIRDNLT 175 (195)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhccccc
Confidence 35688888999999999999999999997 55666778888888888888753
No 85
>PRK01637 hypothetical protein; Reviewed
Probab=33.50 E-value=72 Score=28.45 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=25.3
Q ss_pred cEeehhHHHHHHHHHHHHHHHHhhhhcc
Q 027455 38 RLVLSGCLGALIVMTILSAVVGWVAPNL 65 (223)
Q Consensus 38 ~~V~~G~~~al~~~t~lav~~G~~l~~~ 65 (223)
+.++.|+..+.++..+...+++.++.+.
T Consensus 202 r~~~~Ga~~a~~~w~~~~~~f~~Yv~~~ 229 (286)
T PRK01637 202 RHALVGALVAALLFELGKKGFALYITTF 229 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999999998765
No 86
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=33.49 E-value=3e+02 Score=27.08 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhhc-cchHHHHHHHHhcccCCcEeehHHHH
Q 027455 142 PIFLKAFSITFFGEW-GDKSQLATIGLAADENPFGVVLGGII 182 (223)
Q Consensus 142 ~~f~~af~l~FlaE~-GDKTQlati~LA~~~~~~~V~~G~~~ 182 (223)
..+...++..|..+- ++-+|..++.+-.-.+-..|+-++..
T Consensus 266 vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~ 307 (488)
T KOG2325|consen 266 VCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGIT 307 (488)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhH
Confidence 456677778888877 89999988888765444445544433
No 87
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=33.00 E-value=90 Score=26.59 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 027455 68 RKLTHHITTVLFFGFGLWSLWDA 90 (223)
Q Consensus 68 ~~~i~~~ag~lFl~fG~~~l~~~ 90 (223)
.++++++.|.+|+.+|++++++.
T Consensus 185 ~~~~~~~~G~~li~~g~~l~~~~ 207 (208)
T COG1280 185 SRIINRLFGVLLIGFGVKLALSR 207 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 67899999999999999998753
No 88
>TIGR00895 2A0115 benzoate transport.
Probab=32.05 E-value=3.4e+02 Score=23.48 Aligned_cols=20 Identities=15% Similarity=0.024 Sum_probs=12.8
Q ss_pred HHHHHHHHHhHHhhhhccHH
Q 027455 186 LCTTAAVIGGKSLASQISEK 205 (223)
Q Consensus 186 l~t~laV~~G~~~~~~i~~~ 205 (223)
++..++.+.+.++.+|++.+
T Consensus 296 ~~~~~~~~~~~~l~~~~~~~ 315 (398)
T TIGR00895 296 FGGVIGSIIFGWLADRLGPR 315 (398)
T ss_pred HHHHHHHHHHHHHHhhcchH
Confidence 44555566666677777776
No 89
>PRK15120 lipopolysaccharide ABC transporter permease LptF; Provisional
Probab=31.82 E-value=1.7e+02 Score=26.78 Aligned_cols=62 Identities=11% Similarity=0.154 Sum_probs=40.0
Q ss_pred HHHHHHccCCCc----EeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhh
Q 027455 27 AAAILAMRHPRR----LVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLW 88 (223)
Q Consensus 27 ~~~~LA~r~~~~----~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~ 88 (223)
+++.|+.+.+|. .++.|..++++--.+..+.-.-.-...+|+..--|.--++|++.|++.++
T Consensus 282 lavpl~~~~~R~g~~~~i~~~i~~~~~y~~l~~~~~~l~~~g~lpp~la~Wlp~i~~~~~~~~l~~ 347 (366)
T PRK15120 282 MVVPLSVVNPRQGRVLSMLPAMLLYLIFFLLQTSLRSNGGKGKLDPMIWMWAVNLIYLALAIVLNL 347 (366)
T ss_pred HHhhhcccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 367788776654 34444444444333333332222345889999999999999999999885
No 90
>PF14007 YtpI: YtpI-like protein
Probab=31.82 E-value=37 Score=25.82 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhccc
Q 027455 67 SRKLTHHITTVLFFGFGLWSLWDAFS 92 (223)
Q Consensus 67 p~~~i~~~ag~lFl~fG~~~l~~~~~ 92 (223)
.+.+++++.|++|+++|+..++.+++
T Consensus 54 ~~st~~~iV~~ifl~lG~~n~~~G~r 79 (89)
T PF14007_consen 54 FGSTVRLIVGAIFLVLGLFNLFAGIR 79 (89)
T ss_pred cccHHHHHHHHHHHHHhHHHHHHHHH
Confidence 67899999999999999999988764
No 91
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=31.54 E-value=4.2e+02 Score=26.02 Aligned_cols=31 Identities=6% Similarity=0.180 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhccHHHHHHH
Q 027455 180 GIIGQALCTTAAVIGGKSLASQISEKIVIMD 210 (223)
Q Consensus 180 ~~~g~~l~t~laV~~G~~~~~~i~~~~i~~~ 210 (223)
+..+....+.+.-+.|-++-+|++.|.+.++
T Consensus 310 an~~~g~v~~~~t~~~~~lid~~gRRpLll~ 340 (485)
T KOG0569|consen 310 ANLGIGIVNLLSTLVSPFLIDRLGRRPLLLI 340 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4556666677777777777888888887776
No 92
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=31.49 E-value=1e+02 Score=23.96 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhhhhcccCHHH
Q 027455 46 GALIVMTILSAVVGWVAPNLISRKL 70 (223)
Q Consensus 46 ~al~~~t~lav~~G~~l~~~lp~~~ 70 (223)
..+++.+++++.+|.|+-++.|.+.
T Consensus 50 ~~~v~pil~G~~lG~WLD~~~~t~~ 74 (100)
T TIGR02230 50 WSVAIPTLLGVAVGIWLDRHYPSPF 74 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 4567778889999999998888654
No 93
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=31.40 E-value=50 Score=28.63 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=29.0
Q ss_pred EeehhHHHHHHHHHHHHHHHHhhhhcc----------cC-HHHHHHHHH----HHHHHHHHHHhhhc
Q 027455 39 LVLSGCLGALIVMTILSAVVGWVAPNL----------IS-RKLTHHITT----VLFFGFGLWSLWDA 90 (223)
Q Consensus 39 ~V~~G~~~al~~~t~lav~~G~~l~~~----------lp-~~~i~~~ag----~lFl~fG~~~l~~~ 90 (223)
..|=|+.+++.+.+ +.+.+....+.+ ++ ...++.+++ +.++..|+..|..+
T Consensus 88 ~lFdg~SL~Ly~~~-i~vYltni~~gi~~~~~~~~~~v~r~~~l~VlAASn~Ii~~~LvGVLvLQaG 153 (196)
T PF08229_consen 88 KLFDGASLVLYVFG-ICVYLTNIVPGIRSVSSGNWGEVDREDGLRVLAASNTIIALVLVGVLVLQAG 153 (196)
T ss_pred hcccchhHHHHHHH-HHHHhHhhHhHHHhcCCCCcccccHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 57778888776543 445555544321 12 223444443 56777888888654
No 94
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=31.22 E-value=2.2e+02 Score=24.96 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=34.7
Q ss_pred HccCCCcEeehhHHHHHHHHHHHHHHHHhhh----hccc---CHHHHHHHHHHHHHHHHHHHhh
Q 027455 32 AMRHPRRLVLSGCLGALIVMTILSAVVGWVA----PNLI---SRKLTHHITTVLFFGFGLWSLW 88 (223)
Q Consensus 32 A~r~~~~~V~~G~~~al~~~t~lav~~G~~l----~~~l---p~~~i~~~ag~lFl~fG~~~l~ 88 (223)
....+++..+. ......+++-+++++|.++ .... -..++.-+++..|+..++..+.
T Consensus 224 ~~~~~~~~~~~-~~~~~sl~~piG~~ig~~~~~~~~~~~~~~~~~~~~a~aaG~~lyv~~~ell 286 (317)
T PF02535_consen 224 KAGFSKRKALL-LLLLFSLSTPIGALIGIAISNSGSSSSSDIVSGILLAFAAGTFLYVAFVELL 286 (317)
T ss_pred hhccccchhhH-HHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444454444 7788888999999999999 2222 2233455566666666665443
No 95
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=30.18 E-value=1.8e+02 Score=19.71 Aligned_cols=48 Identities=17% Similarity=0.143 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhc
Q 027455 43 GCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA 90 (223)
Q Consensus 43 G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~ 90 (223)
+..-..+..++....+|-+-...-+-..--+..+.+|..++..++-..
T Consensus 3 ~~~~~~f~i~~~~~~iGl~~~~~~l~~KGy~~~~~l~~l~s~~tl~K~ 50 (53)
T PF05360_consen 3 GQSWISFGISIVLMLIGLWNAPLDLSEKGYYAMGLLFLLFSAFTLQKT 50 (53)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344455666777788888877766666678899999999999887543
No 96
>COG1238 Predicted membrane protein [Function unknown]
Probab=30.12 E-value=3e+02 Score=22.98 Aligned_cols=63 Identities=13% Similarity=0.153 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHhhccchHHHHHHHHHccCCCcEeehhHHHHHHHHHHHHHHHHhhhhcccCH
Q 027455 5 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISR 68 (223)
Q Consensus 5 ~~~f~~~f~~iflaE~GDKTql~~~~LA~r~~~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~ 68 (223)
...|+.+|+--.+-=++.--.++.+.++- ++++....=+++|-++-++..-.+|+...+.+.+
T Consensus 20 ~~Lf~vaF~eat~lP~~sE~~l~~m~~~~-~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~ 82 (161)
T COG1238 20 AGLFIVAFLEATLLPVPSEVLLAPMLLLG-LNAWILALVATLGSVLGGLVNYALGRFLPEFIAR 82 (161)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHcC-CchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHH
Confidence 45677888888887888888999999988 7888777777777777777777777776665544
No 97
>PRK10995 inner membrane protein; Provisional
Probab=29.89 E-value=1.6e+02 Score=25.53 Aligned_cols=33 Identities=9% Similarity=0.159 Sum_probs=26.5
Q ss_pred HhhhhcccCHH---HHHHHHHHHHHHHHHHHhhhcc
Q 027455 59 GWVAPNLISRK---LTHHITTVLFFGFGLWSLWDAF 91 (223)
Q Consensus 59 G~~l~~~lp~~---~i~~~ag~lFl~fG~~~l~~~~ 91 (223)
+.++.+++.+. .+.++.|++...+|+.++.++.
T Consensus 178 a~~l~~~LG~~gl~ii~Ri~GliL~aiavq~i~~Gi 213 (221)
T PRK10995 178 SGAIMRLLGKGGIEAISRLMGFLLVCMGVQFIINGI 213 (221)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666554 5788999999999999999875
No 98
>COG0795 Predicted permeases [General function prediction only]
Probab=29.03 E-value=2e+02 Score=26.19 Aligned_cols=65 Identities=25% Similarity=0.437 Sum_probs=44.9
Q ss_pred HHHHHHHccCCCc-----EeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhc
Q 027455 26 FAAAILAMRHPRR-----LVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA 90 (223)
Q Consensus 26 l~~~~LA~r~~~~-----~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~ 90 (223)
++++.++.+++|. .++.|..++++.-.+............+|+...-+.--++|+..|+|.++..
T Consensus 292 lla~~l~~~~~R~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~p~~a~~~p~~i~l~~~~~l~~~~ 361 (364)
T COG0795 292 LLALPLSLRNPRSGRLGLRLLGGILLGLLFYVLLFLLGALALAGKLPPFLAAWLPNLVFLALGLWLLRRK 361 (364)
T ss_pred HHHHHHhhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5677888887762 2344444444444444444444556789999999999999999999998753
No 99
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=28.77 E-value=1.6e+02 Score=24.76 Aligned_cols=47 Identities=19% Similarity=0.173 Sum_probs=37.1
Q ss_pred eehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhh
Q 027455 40 VLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLW 88 (223)
Q Consensus 40 V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~ 88 (223)
...|....+.+.......+|+++.+. .++...+.+++.+++|+.++.
T Consensus 47 f~~G~~~~~~~lG~~~~~~g~~~~~~--~~~~~~i~g~~~i~~Gl~~l~ 93 (211)
T PF02683_consen 47 FVLGFALVFALLGLGAGALGSFFGQI--SPWLYIIAGVLLILFGLSLLG 93 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 45677777788888888888887633 458899999999999998764
No 100
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=28.58 E-value=87 Score=23.51 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=24.6
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHHhhhcc
Q 027455 62 APNLISRKLTHHITTVLFFGFGLWSLWDAF 91 (223)
Q Consensus 62 l~~~lp~~~i~~~ag~lFl~fG~~~l~~~~ 91 (223)
..+.+|++.-..+.-++|++|++..+|--.
T Consensus 18 ~c~~Lsp~~R~~vvl~ml~~fa~l~ly~~~ 47 (85)
T PF13150_consen 18 YCGRLSPKQRLRVVLVMLVLFAALCLYMTV 47 (85)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357789999999999999999998887543
No 101
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=28.33 E-value=2.9e+02 Score=26.37 Aligned_cols=81 Identities=19% Similarity=0.028 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhhccch-HHHHHHHHHccCCCc---EeehhHHHHHHHHHHHHHHHHhhhhc---ccCHHHHHHHHHHH
Q 027455 6 QGFTKSLAMTVLSEIGDK-TFFAAAILAMRHPRR---LVLSGCLGALIVMTILSAVVGWVAPN---LISRKLTHHITTVL 78 (223)
Q Consensus 6 ~~f~~~f~~iflaE~GDK-Tql~~~~LA~r~~~~---~V~~G~~~al~~~t~lav~~G~~l~~---~lp~~~i~~~ag~l 78 (223)
..|..+...++++-++|- .|=....+++.+++. .+..|..+|=++.+++.++.-....+ .-..-.+.+..+.+
T Consensus 104 ~~f~~~~~~v~~~g~~~~~~q~s~~gla~~fp~~~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~~a~~ 183 (437)
T TIGR00939 104 GFFVTTMASVVIINSGMALLQGSLFGLAGVFPSTYSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFGTPCV 183 (437)
T ss_pred hHHHHHHHHHHHHHhhhhhhcccchhhcccCCHHHHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHHHHHH
Confidence 356666666666666653 344667888888863 58888888877777777775543333 22223445555555
Q ss_pred HHHHHHHH
Q 027455 79 FFGFGLWS 86 (223)
Q Consensus 79 Fl~fG~~~ 86 (223)
..+..+.+
T Consensus 184 v~l~~i~~ 191 (437)
T TIGR00939 184 VQLICIVC 191 (437)
T ss_pred HHHHHHHH
Confidence 54444443
No 102
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=27.90 E-value=1.3e+02 Score=25.78 Aligned_cols=48 Identities=21% Similarity=0.303 Sum_probs=38.9
Q ss_pred ehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhc
Q 027455 41 LSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA 90 (223)
Q Consensus 41 ~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~ 90 (223)
.-.++..+++.|++.+.+..+.-+.++ ..+++++++-++||..+++-+
T Consensus 22 I~~AT~~livAt~i~l~~~w~~~rkv~--km~l~s~~~v~vFG~lTl~f~ 69 (180)
T COG2917 22 IYAATAVLIVATVIQLAILWIKYRKVE--KMQLISGVVVVVFGGLTLIFH 69 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHhchhHhhcc
Confidence 445677788899999999998888765 468888888889999998754
No 103
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=27.72 E-value=4.5e+02 Score=23.57 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhHHhhhhccHHHHHHH
Q 027455 185 ALCTTAAVIGGKSLASQISEKIVIMD 210 (223)
Q Consensus 185 ~l~t~laV~~G~~~~~~i~~~~i~~~ 210 (223)
.++..++......+.+|+..|.+-..
T Consensus 267 ~i~~ii~~~~~~~l~~r~g~~~~~~~ 292 (437)
T TIGR00792 267 IVAGLIGVLLFPRLVKKFGRKILFAG 292 (437)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 34445555555566777776655444
No 104
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=27.40 E-value=2.2e+02 Score=24.81 Aligned_cols=70 Identities=10% Similarity=0.133 Sum_probs=44.7
Q ss_pred HhhhccchHHHHHHHHhc---ccCCcEeehHHHHHHHHHHHHHHHHhHHhhhhccHHHHH-HH-HHHHHHHHHhhh
Q 027455 152 FFGEWGDKSQLATIGLAA---DENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVI-MD-ICFFFFNTTYQF 222 (223)
Q Consensus 152 FlaE~GDKTQlati~LA~---~~~~~~V~~G~~~g~~l~t~laV~~G~~~~~~i~~~~i~-~~-~lFl~fG~~~l~ 222 (223)
|.|-==|--=+..+-+|. |++.+.+.+|-.+|-..--..+ +.+.+..+.+|++|+- +. .+=+..|++.++
T Consensus 12 y~aTaiD~lIiL~l~Far~~~~k~~~~I~~GQyLGs~~lilaS-L~~a~v~~fvp~e~I~glLGLIPi~LGik~l~ 86 (205)
T COG4300 12 YIATAIDLLIILLLFFARRKSRKDILHIYLGQYLGSVILILAS-LLFAFVLNFVPEEWILGLLGLIPIYLGIKVLI 86 (205)
T ss_pred HHHhhHHHHHHHHHHHHHhcccCcEEEEeHHHHHhHHHHHHHH-HHHHHHHhhCcHHHHHHHHhHHHHHHhhHHhh
Confidence 333333444445555553 3467889999888866544333 3445577889999998 55 777777877665
No 105
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=27.08 E-value=1.9e+02 Score=25.91 Aligned_cols=61 Identities=13% Similarity=0.184 Sum_probs=48.8
Q ss_pred HHHHHHHccCCCcEeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhcc
Q 027455 26 FAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAF 91 (223)
Q Consensus 26 l~~~~LA~r~~~~~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~~ 91 (223)
+++..++ .+++.++.|...|...+=..+=.+.+++-++ .++++.+...-+..|+.++.++.
T Consensus 153 ~Aa~g~~--~~~~im~~a~i~aI~~m~~aa~~l~~ll~r~---p~l~~~~~~iL~~IG~kli~~~~ 213 (254)
T COG0861 153 IAAVGMA--GHPFVMVTAVIFAILVMRFAAFLLARLLERH---PTLKYLALVILLFIGVKLILEGL 213 (254)
T ss_pred HHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHc---hHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444444 4567899999999999999999988888554 46888888888899999998874
No 106
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=26.57 E-value=2.3e+02 Score=24.49 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=52.5
Q ss_pred cchHHHHHHHHHccCCC-cEeehhHHHHHHHHHHHHHHHHhhhhcccC---HHHHHHHHHHHHHHHHHHHhhhccc
Q 027455 21 GDKTFFAAAILAMRHPR-RLVLSGCLGALIVMTILSAVVGWVAPNLIS---RKLTHHITTVLFFGFGLWSLWDAFS 92 (223)
Q Consensus 21 GDKTql~~~~LA~r~~~-~~V~~G~~~al~~~t~lav~~G~~l~~~lp---~~~i~~~ag~lFl~fG~~~l~~~~~ 92 (223)
|+-|-=+++.++.+++. ..+..++.+...+.+.+.-.....+.+++- .+.+.++.|++-..+|+-++.++.+
T Consensus 122 GPg~Ist~i~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~s~~i~r~lG~~G~~~~~RimGllL~al~vq~i~~Gl~ 197 (203)
T COG2095 122 GPGTIATVIVLSSQYGNSKLAVVLAILLASLLTYLILLSSSRIMRLLGKTGLNALTRIMGLLLAALGVQMILDGLR 197 (203)
T ss_pred CcHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677888888873 345556666666666666667777766664 5578899999999999999988753
No 107
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=26.09 E-value=4.4e+02 Score=22.98 Aligned_cols=23 Identities=4% Similarity=-0.057 Sum_probs=13.4
Q ss_pred HHHHHHHhHHhhhhccHHHHHHH
Q 027455 188 TTAAVIGGKSLASQISEKIVIMD 210 (223)
Q Consensus 188 t~laV~~G~~~~~~i~~~~i~~~ 210 (223)
..++.+.+.++.+|+.+|.+...
T Consensus 243 ~~~~~~~~g~l~~r~g~~~~~~~ 265 (377)
T PRK11102 243 LFVMTIINSRFVRRVGALNMLRF 265 (377)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHH
Confidence 34444555566777777765444
No 108
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=25.77 E-value=5.6e+02 Score=24.07 Aligned_cols=44 Identities=18% Similarity=0.467 Sum_probs=30.9
Q ss_pred EeehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhccc
Q 027455 39 LVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS 92 (223)
Q Consensus 39 ~V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~~~ 92 (223)
..++|...-+++.-.+..++|. ..++.+++..+.|+++++.++.
T Consensus 160 ~~~lGvPG~~lLiy~i~~l~~~----------~~~a~~~i~~~iG~yll~kGfg 203 (344)
T PF04123_consen 160 RTFLGVPGLILLIYAILALLGY----------PAYALGIILLLIGLYLLYKGFG 203 (344)
T ss_pred ceeecchHHHHHHHHHHHHHcc----------hHHHHHHHHHHHHHHHHHHhcC
Confidence 5777777444455555555444 5677778888999999998874
No 109
>PF10755 DUF2585: Protein of unknown function (DUF2585); InterPro: IPR019691 This family is conserved in Proteobacteria. The function is not known, but it is thought to be a transmembrane protein. ; GO: 0005886 plasma membrane
Probab=25.36 E-value=2.1e+02 Score=24.21 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=41.2
Q ss_pred eehhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhhhcc
Q 027455 40 VLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAF 91 (223)
Q Consensus 40 V~~G~~~al~~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~~~~ 91 (223)
=..|.....-+...++..+|-++++++|.. +....++.|=.+..+.++|.+
T Consensus 95 ~Y~GDSV~NSv~D~~~m~~GF~lA~rlPv~-~tv~lai~~E~~~~~~IRDnL 145 (165)
T PF10755_consen 95 DYFGDSVLNSVSDTLAMVLGFLLARRLPVW-VTVALAIAFELLTGWVIRDNL 145 (165)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHHHHHHhhcch
Confidence 346888888999999999999999999985 455666777777778888765
No 110
>COG1238 Predicted membrane protein [Function unknown]
Probab=25.15 E-value=1.6e+02 Score=24.58 Aligned_cols=63 Identities=21% Similarity=0.184 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhhccchHHHHHHHHhcccCCcEeehHHHHHHHHHHHHHHHHhHHhhhhccHH
Q 027455 142 PIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEK 205 (223)
Q Consensus 142 ~~f~~af~l~FlaE~GDKTQlati~LA~~~~~~~V~~G~~~g~~l~t~laV~~G~~~~~~i~~~ 205 (223)
..|..+|+--.+-=...---+..+.++. ++|+...+=+++|..+-+...-..|+...+.+..+
T Consensus 21 ~Lf~vaF~eat~lP~~sE~~l~~m~~~~-~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~ 83 (161)
T COG1238 21 GLFIVAFLEATLLPVPSEVLLAPMLLLG-LNAWILALVATLGSVLGGLVNYALGRFLPEFIARR 83 (161)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHcC-CchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHH
Confidence 4677777766666677777788888887 88888888888888888888889998887777665
No 111
>PRK10229 threonine efflux system; Provisional
Probab=25.14 E-value=1.2e+02 Score=25.27 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 027455 69 KLTHHITTVLFFGFGLWSLWD 89 (223)
Q Consensus 69 ~~i~~~ag~lFl~fG~~~l~~ 89 (223)
+++++++|++++.+|++.+.+
T Consensus 185 ~~in~~~g~~li~~~i~l~~~ 205 (206)
T PRK10229 185 KWIDGFAGALFAGFGIHLIIS 205 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999999998764
No 112
>PRK11111 hypothetical protein; Provisional
Probab=24.77 E-value=2.3e+02 Score=24.56 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=42.9
Q ss_pred cchHHHHHHHHHccCCCcEeehhHHHHH---HHHHHHHHHHHhhhhcccC---HHHHHHHHHHHHHHHHHHHhhhcc
Q 027455 21 GDKTFFAAAILAMRHPRRLVLSGCLGAL---IVMTILSAVVGWVAPNLIS---RKLTHHITTVLFFGFGLWSLWDAF 91 (223)
Q Consensus 21 GDKTql~~~~LA~r~~~~~V~~G~~~al---~~~t~lav~~G~~l~~~lp---~~~i~~~ag~lFl~fG~~~l~~~~ 91 (223)
|.-|-=+++.++.+++.+.-..+...+. .+.+.+.-..+.++.+++. .+.+.++.|++-..+|+-++.++.
T Consensus 129 GPGaIttvI~l~~~~~~~~~~~~~~~ai~~~~~~~~l~l~~s~~i~r~LG~~G~~vi~RimGliL~aiaVq~i~~Gi 205 (214)
T PRK11111 129 GPGAISSTIVWGTRYHSWSNLLGFSVAIALFALCCWLLFRMAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTGI 205 (214)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445666777765432222222233 3334444444566666664 446789999999999999999875
No 113
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=24.62 E-value=1.8e+02 Score=24.92 Aligned_cols=47 Identities=9% Similarity=0.025 Sum_probs=33.6
Q ss_pred ehHHHHHHHHHHHHHHHHhHHhhhhccHHHHHHHHHHHHHHHHhhhC
Q 027455 177 VLGGIIGQALCTTAAVIGGKSLASQISEKIVIMDICFFFFNTTYQFF 223 (223)
Q Consensus 177 ~~G~~~g~~l~t~laV~~G~~~~~~i~~~~i~~~~lFl~fG~~~l~~ 223 (223)
+-.++..++++|+++.......-++++.-..-..++-+.||..++++
T Consensus 22 I~~AT~~livAt~i~l~~~w~~~rkv~km~l~s~~~v~vFG~lTl~f 68 (180)
T COG2917 22 IYAATAVLIVATVIQLAILWIKYRKVEKMQLISGVVVVVFGGLTLIF 68 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchhHhhc
Confidence 44566777888999999888888887654333336667788888764
No 114
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=24.22 E-value=2.1e+02 Score=23.90 Aligned_cols=21 Identities=24% Similarity=0.134 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 027455 69 KLTHHITTVLFFGFGLWSLWD 89 (223)
Q Consensus 69 ~~i~~~ag~lFl~fG~~~l~~ 89 (223)
+++++++|.+|+.+|++++.+
T Consensus 183 ~~i~~~~g~~li~~~~~l~~~ 203 (205)
T PRK10520 183 KALNKIFGSLFMLVGALLASA 203 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999999998765
No 115
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=24.04 E-value=5e+02 Score=24.87 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=14.0
Q ss_pred HHHhhccchHHHHHHHHHccCCCc
Q 027455 15 TVLSEIGDKTFFAAAILAMRHPRR 38 (223)
Q Consensus 15 iflaE~GDKTql~~~~LA~r~~~~ 38 (223)
-+-+-+|.-|++. |+.+|++.
T Consensus 123 s~ssg~GE~tfL~---lt~~y~~~ 143 (402)
T PF02487_consen 123 SLSSGLGEVTFLS---LTHFYGKS 143 (402)
T ss_pred hhhhhhhHHHHHH---HHHhcCcc
Confidence 3345567777765 68899875
No 116
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=24.01 E-value=6e+02 Score=23.77 Aligned_cols=26 Identities=19% Similarity=0.017 Sum_probs=17.1
Q ss_pred EeehhHHHHHHHHHHHHHHHHhhhhcc
Q 027455 39 LVLSGCLGALIVMTILSAVVGWVAPNL 65 (223)
Q Consensus 39 ~V~~G~~~al~~~t~lav~~G~~l~~~ 65 (223)
.+..|+ .++.--|.-+...|..+.+.
T Consensus 125 Gll~Gs-i~f~GGhGTAaa~g~~fe~~ 150 (368)
T PF03616_consen 125 GLLAGS-IGFTGGHGTAAAFGPTFEEL 150 (368)
T ss_pred HHHhcc-ccccCCccHHHHHHHHHHHh
Confidence 454443 46777777788888777543
No 117
>COG3817 Predicted membrane protein [Function unknown]
Probab=23.88 E-value=1.3e+02 Score=27.63 Aligned_cols=47 Identities=28% Similarity=0.402 Sum_probs=0.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHhhhcccCCCCchhHHHHHHhhhhhhhhccCcccCCCCCchHhhhhccchhhhhhhHHH
Q 027455 65 LISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIF 144 (223)
Q Consensus 65 ~lp~~~i~~~ag~lFl~fG~~~l~~~~~~~~~~~e~~e~e~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 144 (223)
.++.+++.++.|+.|+.+++.+..|. .+++++ -...|
T Consensus 2 ~~~l~~lY~l~Gi~f~~~a~~sf~dk---------------------------------------tnp~r~----~t~~F 38 (313)
T COG3817 2 MISLELLYILIGIQFLHTAVLSFKDK---------------------------------------TNPVRF----GTGLF 38 (313)
T ss_pred chhHHHHHHHHHHHHHHHHHhhcccc---------------------------------------CCCcee----cchHH
Q ss_pred HHHHHHHHhh
Q 027455 145 LKAFSITFFG 154 (223)
Q Consensus 145 ~~af~l~Fla 154 (223)
|..|.++|+.
T Consensus 39 W~l~~~tFl~ 48 (313)
T COG3817 39 WGLFSLTFLG 48 (313)
T ss_pred HHHHHHHHhc
No 118
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.52 E-value=1.2e+02 Score=22.23 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhHHhhhhccHHHH
Q 027455 182 IGQALCTTAAVIGGKSLASQISEKIV 207 (223)
Q Consensus 182 ~g~~l~t~laV~~G~~~~~~i~~~~i 207 (223)
+...+|-+.++++|-++++|.=++.+
T Consensus 8 l~ivl~ll~G~~~G~fiark~~~k~l 33 (71)
T COG3763 8 LLIVLALLAGLIGGFFIARKQMKKQL 33 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888999999999887766554
No 119
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=22.95 E-value=3e+02 Score=23.53 Aligned_cols=70 Identities=11% Similarity=0.124 Sum_probs=45.1
Q ss_pred cchHHHHHHHHHccCCCc---EeehhHHHHHHHHHHHHHHHHhhhhcccCH---HHHHHHHHHHHHHHHHHHhhhc
Q 027455 21 GDKTFFAAAILAMRHPRR---LVLSGCLGALIVMTILSAVVGWVAPNLISR---KLTHHITTVLFFGFGLWSLWDA 90 (223)
Q Consensus 21 GDKTql~~~~LA~r~~~~---~V~~G~~~al~~~t~lav~~G~~l~~~lp~---~~i~~~ag~lFl~fG~~~l~~~ 90 (223)
|.-|-=+++.++.+++.+ .....+.....+.+.+.-..++++.+++.+ +.+.++.|++-..+|+-++.++
T Consensus 125 GPGaIttvi~l~~~~~~~~~~~~~~~ai~~~~~~~~~~l~~s~~l~~~LG~~g~~il~Ri~GliL~aIaVq~i~~G 200 (201)
T TIGR00427 125 GPGAITTTMVLGARASSIGYKFLVVLAIALVALITWLLFRYSAFIIRRLGRTGINVITRIMGLLLAAIAVEFIVTG 200 (201)
T ss_pred CcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 333444566667766432 223334444555556666667777777754 5678899999999999888765
No 120
>PF10063 DUF2301: Uncharacterized integral membrane protein (DUF2301); InterPro: IPR019275 This family contains uncharacterised integral membrane proteins.
Probab=21.86 E-value=1.9e+02 Score=23.65 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=21.6
Q ss_pred HHHHHhhhhcccCHHH-HHHHH--HHHHHHHHHHHhhhccc
Q 027455 55 SAVVGWVAPNLISRKL-THHIT--TVLFFGFGLWSLWDAFS 92 (223)
Q Consensus 55 av~~G~~l~~~lp~~~-i~~~a--g~lFl~fG~~~l~~~~~ 92 (223)
..++|+++. ..|... .-.++ +++|++|++.=.++..+
T Consensus 85 ~llLghl~g-~~~~~~~~~ll~~~~~L~~i~A~rK~~mPl~ 124 (135)
T PF10063_consen 85 LLLLGHLFG-LLPASVELALLGIWALLFLIFAIRKWRMPLH 124 (135)
T ss_pred HHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 445666664 444444 34444 78888888766555544
No 121
>TIGR00893 2A0114 d-galactonate transporter.
Probab=21.41 E-value=5.1e+02 Score=22.01 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=9.6
Q ss_pred HHHHHHHHhHHhhhhccHH
Q 027455 187 CTTAAVIGGKSLASQISEK 205 (223)
Q Consensus 187 ~t~laV~~G~~~~~~i~~~ 205 (223)
+..++...+.++.+|+..|
T Consensus 263 ~~~~~~~~~g~~~~~~~~~ 281 (399)
T TIGR00893 263 VGFIGMILGGRLSDLLLRR 281 (399)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3444444555555555555
No 122
>PRK10958 leucine export protein LeuE; Provisional
Probab=20.97 E-value=2.6e+02 Score=23.67 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 027455 69 KLTHHITTVLFFGFGLWSLWD 89 (223)
Q Consensus 69 ~~i~~~ag~lFl~fG~~~l~~ 89 (223)
++++++.|++|+.+|++++.+
T Consensus 190 ~~i~~~~g~~l~~~~i~l~~~ 210 (212)
T PRK10958 190 AGGNSLVGLLFVGFAAKLATA 210 (212)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 568999999999999988654
No 123
>PRK10739 putative antibiotic transporter; Provisional
Probab=20.76 E-value=3.4e+02 Score=23.26 Aligned_cols=69 Identities=10% Similarity=0.038 Sum_probs=41.2
Q ss_pred HHHHHHHHHccCCCc-EeehhHHHHHHHHHHHHHHHHhhhhcccCH---HHHHHHHHHHHHHHHHHHhhhccc
Q 027455 24 TFFAAAILAMRHPRR-LVLSGCLGALIVMTILSAVVGWVAPNLISR---KLTHHITTVLFFGFGLWSLWDAFS 92 (223)
Q Consensus 24 Tql~~~~LA~r~~~~-~V~~G~~~al~~~t~lav~~G~~l~~~lp~---~~i~~~ag~lFl~fG~~~l~~~~~ 92 (223)
|-=.++.++.++... .....+.+...+.+.+.-..++.+.+++.+ +.+.++.|.+-..+|+-++.++.+
T Consensus 120 aIttvi~l~~~~~~~~~~~~~ai~~~~~~~~l~l~~s~~i~~~LG~~g~~vi~RimGllLaaiavq~i~~Gi~ 192 (197)
T PRK10739 120 ILATLMLLSHQYPNQMGHLVIALLIAWGGTFVILLQSSLFLRLLGEKGVNALERLMGLILVMLSTQMFLDGIR 192 (197)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555554322 112133333334445555556666666654 467889999999999999988753
No 124
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=20.41 E-value=1.4e+02 Score=22.34 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=18.7
Q ss_pred hhhhccHHHHHHH--HHHHHHHHHhhh
Q 027455 198 LASQISEKIVIMD--ICFFFFNTTYQF 222 (223)
Q Consensus 198 ~~~~i~~~~i~~~--~lFl~fG~~~l~ 222 (223)
..+++|++.=..+ .+|++|++..+|
T Consensus 18 ~c~~Lsp~~R~~vvl~ml~~fa~l~ly 44 (85)
T PF13150_consen 18 YCGRLSPKQRLRVVLVMLVLFAALCLY 44 (85)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777776665 888999887776
Done!