Query 027455
Match_columns 223
No_of_seqs 177 out of 1208
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 17:04:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027455.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027455hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 78.3 31 0.0011 29.4 12.3 26 185-210 305-330 (438)
2 1pw4_A Glycerol-3-phosphate tr 54.5 83 0.0028 26.6 9.7 26 185-210 298-325 (451)
3 4av3_A K(+)-stimulated pyropho 21.9 4.1E+02 0.014 26.2 9.5 37 72-108 16-52 (735)
4 4gc0_A D-xylose-proton symport 17.6 4.7E+02 0.016 22.3 11.7 25 186-210 323-347 (491)
5 4ain_A Glycine betaine transpo 16.6 3.3E+02 0.011 25.8 7.3 82 4-89 412-499 (539)
6 2knc_B Integrin beta-3; transm 15.7 1E+02 0.0035 21.7 2.7 13 75-87 19-31 (79)
7 2lx0_A Membrane fusion protein 15.4 1.8E+02 0.0062 16.8 3.2 16 72-87 11-26 (32)
8 2i68_A Protein EMRE; transmemb 15.3 3E+02 0.01 20.9 5.6 17 72-88 86-102 (137)
9 2dw3_A Intrinsic membrane prot 11.5 2E+02 0.007 20.3 3.2 12 78-89 41-52 (77)
10 2jwa_A Receptor tyrosine-prote 10.9 1.9E+02 0.0064 18.3 2.6 29 172-200 9-37 (44)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=78.26 E-value=31 Score=29.35 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhHHhhhhccHHHHHHH
Q 027455 185 ALCTTAAVIGGKSLASQISEKIVIMD 210 (223)
Q Consensus 185 ~l~t~laV~~G~~~~~~i~~~~i~~~ 210 (223)
.++..++.+.+.++.+|++.|.+-..
T Consensus 305 ~~~~~~~~~~~g~l~~r~~~~~~~~~ 330 (438)
T 3o7q_A 305 MVCFFIGRFTGTWLISRFAPHKVLAA 330 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 34555666677777888888876555
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=54.46 E-value=83 Score=26.64 Aligned_cols=26 Identities=0% Similarity=-0.084 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhHHhhhhc--cHHHHHHH
Q 027455 185 ALCTTAAVIGGKSLASQI--SEKIVIMD 210 (223)
Q Consensus 185 ~l~t~laV~~G~~~~~~i--~~~~i~~~ 210 (223)
.++..++.+...++.+|+ +.|..-.+
T Consensus 298 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~ 325 (451)
T 1pw4_A 298 EYAGIPGTLLCGWMSDKVFRGNRGATGV 325 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence 345555555666677777 66655444
No 3
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=21.92 E-value=4.1e+02 Score=26.23 Aligned_cols=37 Identities=11% Similarity=0.234 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCchhHHHHHHhhh
Q 027455 72 HHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLD 108 (223)
Q Consensus 72 ~~~ag~lFl~fG~~~l~~~~~~~~~~~e~~e~e~~i~ 108 (223)
-++.+++=++|+.+..+.-.+.++++|+++|..+.++
T Consensus 16 ~~~~~i~~l~~a~~~~~~v~~~~~G~~~M~eIa~~I~ 52 (735)
T 4av3_A 16 FFLIPLVALGFAAANFAAVVRKPEGTERMKEISSYIR 52 (735)
T ss_dssp HHTHHHHHHHHHHHHHHHHHTSCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3444455556676665555555566788888766654
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=17.57 E-value=4.7e+02 Score=22.26 Aligned_cols=25 Identities=4% Similarity=-0.055 Sum_probs=12.8
Q ss_pred HHHHHHHHHhHHhhhhccHHHHHHH
Q 027455 186 LCTTAAVIGGKSLASQISEKIVIMD 210 (223)
Q Consensus 186 l~t~laV~~G~~~~~~i~~~~i~~~ 210 (223)
++..++.+.+.++.+|+..|...+.
T Consensus 323 ~~~~~~~~~~~~l~dr~Grr~~~~~ 347 (491)
T 4gc0_A 323 VINLTFTVLAIMTVDKFGRKPLQII 347 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCcchhcc
Confidence 3444444455555566655555443
No 5
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=16.62 E-value=3.3e+02 Score=25.81 Aligned_cols=82 Identities=13% Similarity=0.066 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHHHHhhccchHHHHHHHHHccCC--C-c--EeehhHHHHHHHHHHHHHHHH-hhhhcccCHHHHHHHHHH
Q 027455 4 VVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHP--R-R--LVLSGCLGALIVMTILSAVVG-WVAPNLISRKLTHHITTV 77 (223)
Q Consensus 4 ~~~~f~~~f~~iflaE~GDKTql~~~~LA~r~~--~-~--~V~~G~~~al~~~t~lav~~G-~~l~~~lp~~~i~~~ag~ 77 (223)
.+.......+.+|+.--.|..=+....++++-+ | . .++.|...+.+...++.+- | .- +=.-+...+++|.
T Consensus 412 i~~~l~iili~~FfvTSaDS~s~vl~~~ss~g~~~p~~~~rifWgv~~g~va~~LL~~G-G~~~---L~aLQt~~ii~al 487 (539)
T 4ain_A 412 IMGIIAMILLGTFFITSADSASTVMGTMSQHGQLEANKWVTAAWGVATAAIGLTLLLSG-GDNA---LSNLQNVTIVAAT 487 (539)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHHHHHHHHTTC---------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHHHcCCCCCCCcchhhHHHHHHHHHHHHHHHhC-CHHH---HHHHHhhHHHHHh
Confidence 344555666788899999999999998988643 2 2 5999999988888777542 2 11 2234677788887
Q ss_pred HHHHHHHHHhhh
Q 027455 78 LFFGFGLWSLWD 89 (223)
Q Consensus 78 lFl~fG~~~l~~ 89 (223)
=|.+.=+.+.+.
T Consensus 488 Pf~~v~llm~~s 499 (539)
T 4ain_A 488 PFLFVVIGLMFA 499 (539)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHH
Confidence 776666555543
No 6
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=15.68 E-value=1e+02 Score=21.66 Aligned_cols=13 Identities=15% Similarity=0.450 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHh
Q 027455 75 TTVLFFGFGLWSL 87 (223)
Q Consensus 75 ag~lFl~fG~~~l 87 (223)
+|++.+++-++.+
T Consensus 19 ~gilliGllllli 31 (79)
T 2knc_B 19 GAILLIGLAALLI 31 (79)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 7
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=15.38 E-value=1.8e+02 Score=16.79 Aligned_cols=16 Identities=25% Similarity=0.808 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHh
Q 027455 72 HHITTVLFFGFGLWSL 87 (223)
Q Consensus 72 ~~~ag~lFl~fG~~~l 87 (223)
-.++-.-|+.||.|..
T Consensus 11 glvalltflafgfwlf 26 (32)
T 2lx0_A 11 GLVALLTFLAFGFWLF 26 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455567999999976
No 8
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=15.32 E-value=3e+02 Score=20.91 Aligned_cols=17 Identities=12% Similarity=0.171 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q 027455 72 HHITTVLFFGFGLWSLW 88 (223)
Q Consensus 72 ~~~ag~lFl~fG~~~l~ 88 (223)
..+.|+..++.|+..+.
T Consensus 86 ~~~~Gi~LIi~GV~ll~ 102 (137)
T 2i68_A 86 PAIIGMMLICAGVLIIN 102 (137)
T ss_dssp -CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45677888888988774
No 9
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=11.51 E-value=2e+02 Score=20.33 Aligned_cols=12 Identities=8% Similarity=-0.274 Sum_probs=4.8
Q ss_pred HHHHHHHHHhhh
Q 027455 78 LFFGFGLWSLWD 89 (223)
Q Consensus 78 lFl~fG~~~l~~ 89 (223)
+|++.+++-+-.
T Consensus 41 ~~~lv~l~~iG~ 52 (77)
T 2dw3_A 41 LLLIGFFRVVGR 52 (77)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 10
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=10.87 E-value=1.9e+02 Score=18.29 Aligned_cols=29 Identities=17% Similarity=0.393 Sum_probs=17.0
Q ss_pred CCcEeehHHHHHHHHHHHHHHHHhHHhhh
Q 027455 172 NPFGVVLGGIIGQALCTTAAVIGGKSLAS 200 (223)
Q Consensus 172 ~~~~V~~G~~~g~~l~t~laV~~G~~~~~ 200 (223)
+|.+.++|+..|.++.-.++...+-++-+
T Consensus 9 ~~~~~Ia~~vVGvll~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 9 SPLTSIISAVVGILLVVVLGVVFGILIKR 37 (44)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhheeh
Confidence 45556778888855555555554555443
Done!