Query 027455
Match_columns 223
No_of_seqs 177 out of 1208
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 17:04:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027455.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027455hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pv7a_ f.38.1.2 (A:) Lactose 63.4 22 0.0016 26.8 9.3 36 50-85 149-184 (417)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 59.9 30 0.0022 27.0 9.8 19 187-205 297-315 (447)
3 d1pv7a_ f.38.1.2 (A:) Lactose 16.6 1.5E+02 0.011 21.6 6.4 36 53-88 363-398 (417)
4 d1kqfb2 f.23.22.1 (B:246-290) 10.6 61 0.0044 19.2 1.7 17 71-87 12-28 (45)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 5.6 5.3E+02 0.039 19.0 9.2 68 142-210 25-94 (447)
6 d1q90m_ f.23.25.1 (M:) PetM su 5.0 2.8E+02 0.02 14.9 2.9 23 41-63 5-27 (34)
7 d1m56d_ f.23.8.1 (D:) Bacteria 4.6 3.4E+02 0.025 15.4 3.6 12 143-154 27-38 (42)
8 d1qled_ f.23.8.1 (D:) Bacteria 4.4 3.6E+02 0.026 15.4 3.6 12 143-154 28-39 (43)
9 d1jb0k_ f.30.1.1 (K:) Photosys 4.2 1.2E+02 0.0089 18.7 0.7 16 185-200 1-16 (58)
10 d2e74f1 f.23.25.1 (F:1-32) Pet 4.1 2.7E+02 0.02 14.7 2.1 16 2-17 3-18 (32)
No 1
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=63.44 E-value=22 Score=26.84 Aligned_cols=36 Identities=11% Similarity=-0.152 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHH
Q 027455 50 VMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLW 85 (223)
Q Consensus 50 ~~t~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~ 85 (223)
....++..++..+.+.-+...........++...+.
T Consensus 149 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 184 (417)
T d1pv7a_ 149 VGWALGASIVGIMFTINNQFVFWLGSGCALILAVLL 184 (417)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHH
Confidence 334445555555555555555555544444444333
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=59.89 E-value=30 Score=26.99 Aligned_cols=19 Identities=0% Similarity=-0.048 Sum_probs=9.1
Q ss_pred HHHHHHHHhHHhhhhccHH
Q 027455 187 CTTAAVIGGKSLASQISEK 205 (223)
Q Consensus 187 ~t~laV~~G~~~~~~i~~~ 205 (223)
+..++.+.+.++.+|...+
T Consensus 297 ~~~~~~~~~g~~~~~~~~~ 315 (447)
T d1pw4a_ 297 AGIPGTLLCGWMSDKVFRG 315 (447)
T ss_dssp HHHHHHHHHHHHHHHTSTT
T ss_pred hhhhhhhhhhhhhhhcccc
Confidence 3344444455555555433
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=16.59 E-value=1.5e+02 Score=21.65 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=18.4
Q ss_pred HHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHhh
Q 027455 53 ILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLW 88 (223)
Q Consensus 53 ~lav~~G~~l~~~lp~~~i~~~ag~lFl~fG~~~l~ 88 (223)
.++-.++.++.+....+..-++.+++.++..+..++
T Consensus 363 ~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 363 IFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334445555566666666555555554443
No 4
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=10.58 E-value=61 Score=19.22 Aligned_cols=17 Identities=6% Similarity=-0.105 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 027455 71 THHITTVLFFGFGLWSL 87 (223)
Q Consensus 71 i~~~ag~lFl~fG~~~l 87 (223)
.+.++.+.|..-.+..+
T Consensus 12 ~Kpl~~~~~~~~~~~~~ 28 (45)
T d1kqfb2 12 LKPLAAAGFIATFAGLI 28 (45)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555544433333
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=5.64 E-value=5.3e+02 Score=18.99 Aligned_cols=68 Identities=13% Similarity=0.083 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhhccchHHHHHHHHh-cccCCcEeehHHHH-HHHHHHHHHHHHhHHhhhhccHHHHHHH
Q 027455 142 PIFLKAFSITFFGEWGDKSQLATIGLA-ADENPFGVVLGGII-GQALCTTAAVIGGKSLASQISEKIVIMD 210 (223)
Q Consensus 142 ~~f~~af~l~FlaE~GDKTQlati~LA-~~~~~~~V~~G~~~-g~~l~t~laV~~G~~~~~~i~~~~i~~~ 210 (223)
.++...|. .+.....|++-+..+.-- .+.+.-..-+|-.. ...+...++-..+..+++|...|.+-.+
T Consensus 25 ~i~~~~~~-~~~~~~~~~~~~~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~ 94 (447)
T d1pw4a_ 25 QIFLGIFF-GYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA 94 (447)
T ss_dssp HHHHHHHH-HHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 44554543 456666677655543222 22222223344432 2334445666677778889998887655
No 6
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.99 E-value=2.8e+02 Score=14.88 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=16.5
Q ss_pred ehhHHHHHHHHHHHHHHHHhhhh
Q 027455 41 LSGCLGALIVMTILSAVVGWVAP 63 (223)
Q Consensus 41 ~~G~~~al~~~t~lav~~G~~l~ 63 (223)
.+|...-++-+++++..+|-.+.
T Consensus 5 iagta~tmig~tl~glaigfvll 27 (34)
T d1q90m_ 5 IAGTALTMVGMTLVGLAIGFVLL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhHHHHHHHHHHHHHHHhhe
Confidence 45777777788888877776653
No 7
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.57 E-value=3.4e+02 Score=15.43 Aligned_cols=12 Identities=8% Similarity=0.268 Sum_probs=6.5
Q ss_pred HHHHHHHHHHhh
Q 027455 143 IFLKAFSITFFG 154 (223)
Q Consensus 143 ~f~~af~l~Fla 154 (223)
.......++|+|
T Consensus 27 ~i~~i~~liflA 38 (42)
T d1m56d_ 27 AVVIVAALIFLA 38 (42)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444567776
No 8
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=4.42 E-value=3.6e+02 Score=15.42 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhh
Q 027455 143 IFLKAFSITFFG 154 (223)
Q Consensus 143 ~f~~af~l~Fla 154 (223)
.......++|+|
T Consensus 28 ~i~~i~~liflA 39 (43)
T d1qled_ 28 SILSIAVLVFLA 39 (43)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344445567776
No 9
>d1jb0k_ f.30.1.1 (K:) Photosystem I reaction center subunit X, PsaK {Synechococcus elongatus [TaxId: 32046]}
Probab=4.22 E-value=1.2e+02 Score=18.73 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhHHhhh
Q 027455 185 ALCTTAAVIGGKSLAS 200 (223)
Q Consensus 185 ~l~t~laV~~G~~~~~ 200 (223)
++|+.+++..|++.=+
T Consensus 1 I~cN~lai~ig~~tI~ 16 (58)
T d1jb0k_ 1 ILCNLFAIALGRYAIQ 16 (58)
T ss_dssp CHHHHHHHHHHHC-CC
T ss_pred CeehhHHHHHHHHHHc
Confidence 3799999999997543
No 10
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.07 E-value=2.7e+02 Score=14.71 Aligned_cols=16 Identities=6% Similarity=0.121 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHH
Q 027455 2 SSVVQGFTKSLAMTVL 17 (223)
Q Consensus 2 ~~~~~~f~~~f~~ifl 17 (223)
+..+.+-+.+|.+||+
T Consensus 3 ~eil~aa~lsfglifv 18 (32)
T d2e74f1 3 EEMLYAALLSFGLIFV 18 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHH
Done!