BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027457
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 27 GSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG 86
G V T+ GDI+ + P+T ++ L YN F R KGF+ Q D G
Sbjct: 5 GGMSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTG 64
Query: 87 -GRSAPMNEVQRVEAEKTVVGEFSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLD 144
GR ++ E E + E+ +KH VRG++SM + PN+ S F I G PHLD
Sbjct: 65 TGRGGNSIWGKKFEDEYS---EY--LKHNVRGVVSMAN-NGPNTNGSQFFITYGKQPHLD 118
Query: 145 GQYAVFGKVTKGDETLRKLEGLPTRKEG---IFVMPTERITIHSS 186
+Y VFGKV G ETL +LE LP ++ + + + ITIH++
Sbjct: 119 MKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHAN 163
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 83/161 (51%), Gaps = 11/161 (6%)
Query: 31 VVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRS 89
V T+ GDI+ + P+T ++ L YN F R KGF+ Q D G GR
Sbjct: 3 VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRG 62
Query: 90 APMNEVQRVEAEKTVVGEFSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYA 148
++ E E + E+ +KH VRG++SM + PN+ S F I G PHLD +Y
Sbjct: 63 GNSIWGKKFEDEYS---EY--LKHNVRGVVSMAN-NGPNTNGSQFFITYGKQPHLDMKYT 116
Query: 149 VFGKVTKGDETLRKLEGLPTRKEG---IFVMPTERITIHSS 186
VFGKV G ETL +LE LP ++ + + + ITIH++
Sbjct: 117 VFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHAN 157
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 87/182 (47%), Gaps = 12/182 (6%)
Query: 18 ASSQEDPQLGSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGF 77
+S +E+ R++ TNYGD++F + S P+ + L G Y F + KGF
Sbjct: 8 SSGRENLYFQGVRII--TNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGF 65
Query: 78 VAQVADVVGGRSAPMNEVQRVEAEKTVVGEFSDVKH-VRGILSM---GRYSDPNSAASSF 133
+ Q D G + R ++ + ++K+ RGILSM G PN+ S F
Sbjct: 66 IIQGGDPTGTGKGGESIYGRYFDDEI----YPELKYDRRGILSMASKGASKKPNTNGSQF 121
Query: 134 SILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRK--EGIFVMPTERITIHSSYYYDT 191
I P L+G+Y +FGK+ G ETL LE P+ K + I + + I IHS+ D
Sbjct: 122 FITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDIVIHSNPIADQ 181
Query: 192 EM 193
E+
Sbjct: 182 EI 183
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 16/155 (10%)
Query: 18 ASSQEDPQLGSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGF 77
A+ E P+ S + T+ GDI +P P+TV++ R G YN + F R+ KGF
Sbjct: 11 ATQAEGPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGF 70
Query: 78 VAQVADVVGGRSAPMNEVQRVEAEKTVVGEFSD-----VKHVRG-ILSMGRYSDPNSAAS 131
+ Q D G + E GEF D ++H R LSM + N+ S
Sbjct: 71 MIQTGDPTG---------TGMGGESIWGGEFEDEFHSTLRHDRPYTLSMAN-AGSNTNGS 120
Query: 132 SFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGL 166
F I + P LD ++ VFG+VTKG E ++++ +
Sbjct: 121 QFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNV 155
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 14/167 (8%)
Query: 27 GSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG 86
G V+ T+ G+IE AP +V + V G YN F RV GF+ Q G
Sbjct: 3 GDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQ----GG 58
Query: 87 GRSAPMNEVQRVEAEKTVVGEFSD-VKHVRGILSMGRYSDPNSAASSFSILLGDAPHLD- 144
G + M Q+ + + E + +++ RG ++M R +D +SA S F I + D LD
Sbjct: 59 GFTEQM---QQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDH 115
Query: 145 GQ----YAVFGKVTKGDETLRKLEGLPTRKEGIFV-MPTERITIHSS 186
GQ YAVFGKV KG + K+ +PT G + +P++ + I S+
Sbjct: 116 GQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSA 162
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 14/167 (8%)
Query: 27 GSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG 86
G V+ T+ G+IE AP +V + V G YN F RV GF+ Q G
Sbjct: 3 GDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQ----GG 58
Query: 87 GRSAPMNEVQRVEAEKTVVGEFSD-VKHVRGILSMGRYSDPNSAASSFSILLGDAPHLD- 144
G + M Q+ + + E + +++ RG ++M R +D +SA S F I + D LD
Sbjct: 59 GFTEQM---QQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDH 115
Query: 145 GQ----YAVFGKVTKGDETLRKLEGLPTRKEGIFV-MPTERITIHSS 186
GQ YAVFGKV KG + K+ +PT G + +P++ + I S+
Sbjct: 116 GQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSA 162
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 77/164 (46%), Gaps = 15/164 (9%)
Query: 31 VVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGGRSA 90
V F TN+GDI + AP+TV + R G YN F RV GF+ Q GG
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQ-----GGGFE 56
Query: 91 PMNEVQRVEAEKTVVGEFSDVKHVRGILSMGRYSDPNSAASSFSILLGDAPHLD------ 144
P + Q+ E + +K+ RG L+M R P+SA + F I + D L+
Sbjct: 57 PGMK-QKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESL 115
Query: 145 --GQYAVFGKVTKGDETLRKLEGLPTRKEGIFV-MPTERITIHS 185
Y VF +V G + + K++G+ T + G+ +P E + I S
Sbjct: 116 QGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIES 159
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 77/164 (46%), Gaps = 15/164 (9%)
Query: 31 VVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGGRSA 90
V F TN+GDI + AP+TV + R G YN F RV GF+ Q GG
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQ-----GGGFE 56
Query: 91 PMNEVQRVEAEKTVVGEFSDVKHVRGILSMGRYSDPNSAASSFSILLGDAPHLD------ 144
P + Q+ E + +K+ RG L+M R P+SA + F I + D L+
Sbjct: 57 PGMK-QKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESL 115
Query: 145 --GQYAVFGKVTKGDETLRKLEGLPTRKEGIFV-MPTERITIHS 185
Y VF +V G + + K++G+ T + G+ +P E + I S
Sbjct: 116 QGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIES 159
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Query: 31 VVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRS 89
+ TN GD E Y +P+T + + L +G Y+ F RV FV Q D G G+
Sbjct: 41 ITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKG 100
Query: 90 APMNEVQRVEAEKTVVGEF------SDVKHV-RGILSMGRYSDPNSAASSFSILLGDAPH 142
K++ GE+ ++KH GILSM + PN+ +S F I L PH
Sbjct: 101 G-----------KSIYGEYFEDEINKELKHTGAGILSMSN-NGPNTNSSQFFITLAPLPH 148
Query: 143 LDGQYAVFGKVTKGDETLRKLEGLPT 168
LDG++ +F +V+K + + + T
Sbjct: 149 LDGKHTIFARVSKNMTCIENIASVQT 174
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 17/169 (10%)
Query: 28 SARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGG 87
+ V TN+G I+ + AP+TV++ V+ G Y+ F RV GF+ Q GG
Sbjct: 3 GSMVELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQ-----GG 57
Query: 88 RSAPMNEVQRVEAEKTVVGEFSD-VKHVRGILSMGRYSDPNSAASSFSILLGDAPHLDGQ 146
P +++ + + E ++ +K+ ++M R +DP+SA + F I + D L+
Sbjct: 58 GFEP--GLKQKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHS 115
Query: 147 --------YAVFGKVTKGDETLRKLEGLPTRKEGIFV-MPTERITIHSS 186
YAVFGKV +G + + K++ + T +G +P + + I +
Sbjct: 116 SPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVIEKA 164
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 15/185 (8%)
Query: 27 GSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG 86
GS V TN GD+ + + P+T ++ +L + Y+ F R + FV Q
Sbjct: 18 GSGYVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGG---- 73
Query: 87 GRSAPMNEVQRVEAEKTVVGEF-SDVKHV-RGILSMGRYSDPNSAASSFSILLGDAPHLD 144
K EF ++ H RGILSM S PNS S F I +LD
Sbjct: 74 -DPTGTGTGGESYWGKPFKDEFRPNLSHTGRGILSMAN-SGPNSNRSQFFITFRSCAYLD 131
Query: 145 GQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERITIHSSY-----YYDTEMEICEKE 199
++ +FG+V G + L +E + + + P E I I ++ Y + + +I ++
Sbjct: 132 KKHTIFGRVVGGFDVLTAMENVESDPKTD--RPKEEIRIDATTVFVDPYEEADAQIAQER 189
Query: 200 RSVLK 204
++ LK
Sbjct: 190 KTQLK 194
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 6/128 (4%)
Query: 30 RVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GR 88
V +T+ G I Y AP+T + +L R G YN F R+ K F+ Q D G GR
Sbjct: 13 NVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGR 72
Query: 89 SAPMNEVQRVEAEKTVVGEFSDVKHVRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYA 148
++ E E +F+ GIL+M + P++ S F + L LDG++
Sbjct: 73 GGASIYGKQFEDELHPDLKFTGA----GILAMAN-AGPDTNGSQFFVTLAPTQWLDGKHT 127
Query: 149 VFGKVTKG 156
+FG+V +G
Sbjct: 128 IFGRVCQG 135
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 6/128 (4%)
Query: 30 RVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GR 88
V +T+ G I Y AP+T + +L R G YN F R+ K F+ Q D G GR
Sbjct: 13 NVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGR 72
Query: 89 SAPMNEVQRVEAEKTVVGEFSDVKHVRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYA 148
++ E E +F+ GIL+M + P++ S F + L LDG++
Sbjct: 73 GGASIYGKQFEDELHPDLKFTGA----GILAMAN-AGPDTNGSQFFVTLAPTQWLDGKHT 127
Query: 149 VFGKVTKG 156
+FG+V +G
Sbjct: 128 IFGRVCQG 135
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 6/128 (4%)
Query: 30 RVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GR 88
V +T+ G I Y AP+T + +L R G YN F R+ K F+ Q D G GR
Sbjct: 13 NVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGR 72
Query: 89 SAPMNEVQRVEAEKTVVGEFSDVKHVRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYA 148
++ E E +F+ GIL+M + P++ S F + L LDG++
Sbjct: 73 GGASIYGKQFEDELHPDLKFTGA----GILAMAN-AGPDTNGSQFFVTLAPTQWLDGKHT 127
Query: 149 VFGKVTKG 156
+FG+V +G
Sbjct: 128 IFGRVCQG 135
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 15/141 (10%)
Query: 34 QTNYGDIEFGFYPSVAPQTVDHIFKLV---RLGC------YNTNHFFRVDKGFVAQVADV 84
+N G I F + + P+T ++ L ++G Y + F R+ F+ Q D+
Sbjct: 14 NSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDI 73
Query: 85 VGGRSAPMNEVQRVEAEKTVVGEFSDVKHVR-GILSMGRYSDPNSAASSFSILLGDAPHL 143
G + + ++ E ++KH + G+LSM + PN+ +S F I L P L
Sbjct: 74 TNGNGSGGESIY----GRSFTDENFNMKHDQPGLLSMAN-AGPNTNSSQFLITLVPCPWL 128
Query: 144 DGQYAVFGKVTKGDETLRKLE 164
DG++ VFGKV +G +R++E
Sbjct: 129 DGKHVVFGKVIEGMNVVREME 149
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 15/141 (10%)
Query: 34 QTNYGDIEFGFYPSVAPQTVDHIFKLV---RLGC------YNTNHFFRVDKGFVAQVADV 84
+N G I F + + P+T ++ L ++G Y + F R+ F+ Q D+
Sbjct: 14 NSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDI 73
Query: 85 VGGRSAPMNEVQRVEAEKTVVGEFSDVKHVR-GILSMGRYSDPNSAASSFSILLGDAPHL 143
G + + ++ E ++KH + G+LSM + PN+ +S F I L P L
Sbjct: 74 TNGNGSGGESIY----GRSFTDENFNMKHDQPGLLSMAN-AGPNTNSSQFFITLVPCPWL 128
Query: 144 DGQYAVFGKVTKGDETLRKLE 164
DG++ VFGKV +G +R++E
Sbjct: 129 DGKHVVFGKVIEGMNVVREME 149
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 19/164 (11%)
Query: 31 VVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGGRSA 90
+ QTN+G I + AP+T + + V+ G Y+ F RV GF+ Q GG
Sbjct: 2 IKLQTNHGTITLKLFADKAPETAANFEQYVKDGHYDGTIFHRVIDGFMIQ-----GGGFE 56
Query: 91 P--MNEVQRVEAEKTVVGEFSDVKHVRGILSMGRYSDPNSAASSFSILLGDAPHLD---- 144
P + R + S+ K+ ++M R DP+SA++ F I + D LD
Sbjct: 57 PGMKQKSTRAPIKNEANNGLSNKKYT---IAMARTPDPHSASAQFFINVKDNAFLDHTAP 113
Query: 145 ----GQYAVFGKVTKGDETLRKLEGLPT-RKEGIFVMPTERITI 183
YAVFG+V +G + + +++ + T + G +P + + I
Sbjct: 114 TAHGWGYAVFGEVVEGTDVVDRIKSVATGSRAGHGDVPVDDVII 157
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 58/146 (39%), Gaps = 23/146 (15%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVR----LG-------CYNTNHFFRVDKGFVAQVADVVG 86
G I F + + P+T + L LG CY + F RV K F+ Q D
Sbjct: 34 GRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGD--- 90
Query: 87 GRSAPMNEVQRVEAEKTVVGEFSD----VKHVRGILSMGRYSDPNSAASSFSILLGDAPH 142
+E E G F D +KH R L ++ S F I APH
Sbjct: 91 -----FSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPH 145
Query: 143 LDGQYAVFGKVTKGDETLRKLEGLPT 168
LDG + VFG V G E + ++E L T
Sbjct: 146 LDGVHVVFGLVISGFEVIEQIENLKT 171
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 64/158 (40%), Gaps = 17/158 (10%)
Query: 31 VVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADV----VG 86
+ T GDI + +TV + G YN F RV K F+ Q D G
Sbjct: 8 AIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTG 67
Query: 87 GRSAPMNEVQRVEAEKTVVGEFSD-VKHVRGILSMGRYSDPNSAASSFSILLGDAPHLDG 145
G S NE + EF D + H + + PN+ S F I P LD
Sbjct: 68 GESIWGNEFED---------EFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDF 118
Query: 146 QYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERITI 183
++ VFGKVT+G + + +E + T K P E I I
Sbjct: 119 KHTVFGKVTQGSKIVLDIEKVRTDKRD---KPLEDIKI 153
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 15 IGTASSQEDPQLGSARVVFQTNYGD-----IEFGFYPSVAPQTVDHIFKLV---RLGCYN 66
+G+ ++ P++ + +V F GD + FG + P+TVD+ L + Y
Sbjct: 3 LGSDEKKKGPKV-TVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYK 61
Query: 67 TNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVGE-FSD----VKHVR-GILSM 120
+ F RV K F+ Q D G K++ GE F D +KH G +SM
Sbjct: 62 NSKFHRVIKDFMIQGGDFTRGDGT---------GGKSIYGERFPDENFKLKHYGPGWVSM 112
Query: 121 GRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPT 168
+ ++ S F I LDG++ VFGKV +G E +RK+E T
Sbjct: 113 AN-AGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKT 159
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 28/170 (16%)
Query: 30 RVVFQTNYGD-----IEFGFYPSVAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQ 80
+V F GD + G + + P+TV++ FK + G Y + F RV + F+ Q
Sbjct: 7 KVYFDITIGDEPVGRVVIGLFGNDVPKTVEN-FKQLASGENGFGYKGSIFHRVIRNFMIQ 65
Query: 81 VADVV-----GGRSAPMNEVQRVEAEKTVVGEFSDVKHVRGILSMGRYSDPNSAASSFSI 135
D GG+S R + E +KH G +SM + PNS S F +
Sbjct: 66 GGDFTNFDGTGGKSI---YGTRFDDENL------KIKHFVGAVSMAN-AGPNSNGSQFFV 115
Query: 136 LLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERITIHS 185
P LDG++ VFGKV +G + ++K+E K G+ P + + I+
Sbjct: 116 TTAPTPWLDGRHVVFGKVVEGMDVVKKVE---NTKTGLNDKPKKAVKIND 162
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 69/157 (43%), Gaps = 29/157 (18%)
Query: 31 VVFQTNYGDIEFG-----FYPSVAPQTVDHIFKL---------VRLGCYNTNHFFRVDKG 76
V F + G E G + V P+T ++ + V +G Y + F RV K
Sbjct: 13 VFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIG-YKGSTFHRVIKD 71
Query: 77 FVAQVADVVGGRSAPMNEVQRVEAEKTVVGEFSD----VKH-VRGILSMGRYSDPNSAAS 131
F+ Q D V G + + R G F+D ++H G+LSM S P++
Sbjct: 72 FMIQGGDFVNGDGTGVASIYR--------GPFADENFKLRHSAPGLLSMAN-SGPSTNGC 122
Query: 132 SFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPT 168
F I LDG++ VFGK+ G +RK+E +PT
Sbjct: 123 QFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPT 159
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 67/151 (44%), Gaps = 20/151 (13%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVV-----GGR 88
G I G + AP T ++ F+ + G Y + F RV + F+ Q D GG+
Sbjct: 26 GRITIGLFGKDAPLTTEN-FRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGK 84
Query: 89 SAPMNEVQRVEAEKTVVGEFSDVKHVRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYA 148
S + EK E +VKH G LSM + PN+ S F I P LDG++
Sbjct: 85 S--------IYGEK-FADENLNVKHFVGALSMAN-AGPNTNGSQFFITTAPTPWLDGRHV 134
Query: 149 VFGKVTKGDETLRKLEGLPTRKEGIFVMPTE 179
VFGKV G + + ++E T V P +
Sbjct: 135 VFGKVLDGMDVVLRIEKTKTNSHDRPVKPVK 165
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 16/133 (12%)
Query: 28 SARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGG 87
+ +V+ +T GDI+ + AP+ + +L Y+ F RV GF+ Q D G
Sbjct: 24 NGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGT 83
Query: 88 RSAPMNEVQRVEAEKTVVGEFSDVKHV------RGILSMGRYSDPNSAASSFSILLGDAP 141
S E F D H RG+++M + + S F LG A
Sbjct: 84 GSG---------GESIYGAPFKDEFHSRLRFNRRGLVAMAN-AGSHDNGSQFFFTLGRAD 133
Query: 142 HLDGQYAVFGKVT 154
L+ ++ +FGKVT
Sbjct: 134 ELNNKHTIFGKVT 146
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 66/151 (43%), Gaps = 20/151 (13%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVV-----GGR 88
G I G + AP T ++ F+ + G Y + F RV + F+ Q D GG+
Sbjct: 26 GRITIGLFGKDAPLTTEN-FRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGK 84
Query: 89 SAPMNEVQRVEAEKTVVGEFSDVKHVRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYA 148
S + EK E +VKH G LSM + PN+ S F I P LDG +
Sbjct: 85 S--------IYGEK-FADENLNVKHFVGALSMAN-AGPNTNGSQFFITTAPTPWLDGAHV 134
Query: 149 VFGKVTKGDETLRKLEGLPTRKEGIFVMPTE 179
VFGKV G + + ++E T V P +
Sbjct: 135 VFGKVLDGMDVVLRIEKTKTNSHDRPVKPVK 165
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 68/155 (43%), Gaps = 24/155 (15%)
Query: 28 SARVVFQTNYGD-----IEFGFYPSVAPQTVDHIFKLV---RLGCYNTNHFFRVDKGFVA 79
+ +V F GD + FG + P+TVD+ L + Y + F RV K F+
Sbjct: 5 TVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMI 64
Query: 80 QVADVVGGRSAPMNEVQRVEAEKTVVGE-FSD----VKHVR-GILSMGRYSDPNSAASSF 133
Q D G K++ GE F D +KH G +SM + ++ S F
Sbjct: 65 QGGDFTRGDGT---------GGKSIYGERFPDENFKLKHYGPGWVSMAN-AGKDTNGSQF 114
Query: 134 SILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPT 168
I LDG++ VFGKV +G E +RK+E T
Sbjct: 115 FITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKT 149
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 57/149 (38%), Gaps = 23/149 (15%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLV-----------RLGCYNTNHFFRVDKGFVAQVADVVG 86
G I Y +AP+T ++ L + Y + F RV K F+ Q D
Sbjct: 21 GRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTK 80
Query: 87 GRSAPMNEVQRVEAEKTVVGEFSD----VKHVRGILSMGRYSDPNSAASSFSILLGDAPH 142
G E G F D +KH + PN+ S F I APH
Sbjct: 81 GDGT--------GGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPH 132
Query: 143 LDGQYAVFGKVTKGDETLRKLEGLPTRKE 171
L+ + VFGKV G E + K+E L T +
Sbjct: 133 LNNIHVVFGKVVSGQEVVTKIEYLKTNSK 161
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 22/156 (14%)
Query: 27 GSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG 86
G R+V T G + + +AP+ D +L + ++ F R + F+ Q G
Sbjct: 7 GYLRIV--TTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQ-----G 59
Query: 87 GRS---APMNEVQRVEAEKTVVG---------EFSD--VKHVRGILSMGRYSDPNSAASS 132
GR+ P + + ++ +++ G EF + V G+LSM +S S
Sbjct: 60 GRAELRQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMAN-DGKHSNLSE 118
Query: 133 FSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPT 168
F I HL+ ++ +FG+V G + LR+ E L T
Sbjct: 119 FFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLET 154
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 25/156 (16%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVV-----GGR 88
G I + ++ P+T ++ F+ + G + + F RV FV Q D+ GG+
Sbjct: 21 GRITMELFSNIVPRTAEN-FRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHDGTGGQ 79
Query: 89 SAPMNEVQRVEAEKTVVGEFSDVKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQY 147
S ++ + E DVKH G+LSM N+ S F I L A HLD ++
Sbjct: 80 SIYGDKFED---------ENFDVKHTGPGLLSMANQGQ-NTNNSQFVITLKKAEHLDFKH 129
Query: 148 AVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERITI 183
VFG V G +T++K+E + K + RITI
Sbjct: 130 VVFGFVKDGMDTVKKIESFGSPKGSV----CRRITI 161
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 21/143 (14%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVVGGRSAPMN 93
G + F + P+T ++ F+ + G Y + F R+ GF+ Q D
Sbjct: 37 GRVSFELFADKVPKTAEN-FRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFT-------- 87
Query: 94 EVQRVEAEKTVVGE-FSD----VKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQY 147
K++ GE F D +KH GILSM + PN+ S F I LDG++
Sbjct: 88 -RHNGTGGKSIYGEKFEDENFILKHTGPGILSMAN-AGPNTNGSQFFICTAKTEWLDGKH 145
Query: 148 AVFGKVTKGDETLRKLEGLPTRK 170
VFGKV +G + +E +R
Sbjct: 146 VVFGKVKEGMNIVEAMERFGSRN 168
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 21/142 (14%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVVGGRSAPMN 93
G + F + P+T ++ F+ + G Y + F R+ GF+ Q D
Sbjct: 18 GRVSFELFADKVPKTAEN-FRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFT-------- 68
Query: 94 EVQRVEAEKTVVGE-FSD----VKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQY 147
K++ GE F D +KH GILSM + PN+ S F I LDG++
Sbjct: 69 -RHNGTGGKSIYGEKFEDENFILKHTGPGILSMAN-AGPNTNGSQFFICTAKTEWLDGKH 126
Query: 148 AVFGKVTKGDETLRKLEGLPTR 169
VFGKV +G + +E +R
Sbjct: 127 VVFGKVKEGMNIVEAMERFGSR 148
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 21/142 (14%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVVGGRSAPMN 93
G + F + P+T ++ F+ + G Y + F R+ GF+ Q GG N
Sbjct: 18 GRVSFELFADKVPKTAEN-FRALSTGEKGFGYKGSCFHRIIPGFMCQ-----GGNFTHCN 71
Query: 94 EVQRVEAEKTVVGE-FSD----VKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQY 147
K++ GE F D +KH GILSM + PN+ S F I LDG++
Sbjct: 72 GT----GGKSIYGEKFEDENFILKHTGPGILSMAN-AGPNTNGSQFFICTAKTEWLDGKH 126
Query: 148 AVFGKVTKGDETLRKLEGLPTR 169
VFGKV +G + +E +R
Sbjct: 127 VVFGKVKEGMNIVEAMERFGSR 148
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 21/142 (14%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVVGGRSAPMN 93
G + F + P+T ++ F+ + G Y + F R+ GF+ Q D
Sbjct: 18 GRVSFELFADKVPKTAEN-FRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFT-------- 68
Query: 94 EVQRVEAEKTVVGE-FSD----VKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQY 147
K++ GE F D +KH GILSM + PN+ S F I LDG++
Sbjct: 69 -RHNGTGGKSIYGEKFEDENFILKHTGPGILSMAN-AGPNTNGSQFFICTAKTEWLDGKH 126
Query: 148 AVFGKVTKGDETLRKLEGLPTR 169
VFGKV +G + +E +R
Sbjct: 127 VVFGKVKEGMNIVEAMERFGSR 148
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 19/138 (13%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVVGGRSAPMN 93
G + F Y + P+T ++ F+ + G Y + F RV F+ Q D G
Sbjct: 16 GRVVFKLYNDIVPKTAEN-FRALCTGEKGFGYAGSPFHRVIPDFMLQGGDFTAGNG---- 70
Query: 94 EVQRVEAEKTVVGEFSDVK----HVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQYA 148
+ G+F D H R G+LSM + PN+ S F I P LDG++
Sbjct: 71 ----TGGKSIYGGKFPDENFKKHHDRPGLLSMAN-AGPNTNGSQFFITTVPCPWLDGKHV 125
Query: 149 VFGKVTKGDETLRKLEGL 166
VFG+V G + ++K+E L
Sbjct: 126 VFGEVVDGYDIVKKVESL 143
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 21/142 (14%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVVGGRSAPMN 93
G + F + P+T ++ F+ + G Y + F R+ GF+ Q D
Sbjct: 18 GRVSFELFADKVPKTAEN-FRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFT-------- 68
Query: 94 EVQRVEAEKTVVGE-FSD----VKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQY 147
K++ GE F D +KH GILSM + PN+ S F I LDG++
Sbjct: 69 -RHNGTGGKSIYGEKFEDENFILKHTGPGILSMAN-AGPNTNGSQFFICTAKTEWLDGKH 126
Query: 148 AVFGKVTKGDETLRKLEGLPTR 169
VFGKV +G + +E +R
Sbjct: 127 VVFGKVKEGMNIVEAMERFGSR 148
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 21/142 (14%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVVGGRSAPMN 93
G + F + P+T ++ F+ + G Y + F R+ GF+ Q D
Sbjct: 17 GRVSFELFADKVPKTAEN-FRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFT-------- 67
Query: 94 EVQRVEAEKTVVGE-FSD----VKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQY 147
K++ GE F D +KH GILSM + PN+ S F I LDG++
Sbjct: 68 -RHNGTGGKSIYGEKFEDENFILKHTGPGILSMAN-AGPNTNGSQFFICTAKTEWLDGKH 125
Query: 148 AVFGKVTKGDETLRKLEGLPTR 169
VFGKV +G + +E +R
Sbjct: 126 VVFGKVKEGMNIVEAMERFGSR 147
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 14/146 (9%)
Query: 28 SARVVFQTNYGD-----IEFGFYPSVAPQTVDHIFKLV---RLGCYNTNHFFRVDKGFVA 79
+A+V F GD I G + V P+TV++ L + Y + F RV K F+
Sbjct: 15 TAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMI 74
Query: 80 QVADVVGGRSAPMNEVQRVEAEKTVVGEFSDVKHVR-GILSMGRYSDPNSAASSFSILLG 138
Q D+ G + +T E +KH G +SM + P++ S F I L
Sbjct: 75 QGGDITTGDGTGGVSIY----GETFPDENFKLKHYGIGWVSMAN-AGPDTNGSQFFITLT 129
Query: 139 DAPHLDGQYAVFGKVTKGDETLRKLE 164
LDG++ VFGKV G + +E
Sbjct: 130 KPTWLDGKHVVFGKVIDGMTVVHSIE 155
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 21/142 (14%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVVGGRSAPMN 93
G + F + P+T ++ F+ + G Y + F R+ GF+ Q D
Sbjct: 26 GRVSFELFADKVPKTAEN-FRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFT-------- 76
Query: 94 EVQRVEAEKTVVGE-FSD----VKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQY 147
K++ GE F D +KH GILSM + PN+ S F I LDG++
Sbjct: 77 -RHNGTGGKSIYGEKFEDENFILKHTGPGILSMAN-AGPNTNGSQFFICTAKTEWLDGKH 134
Query: 148 AVFGKVTKGDETLRKLEGLPTR 169
VFGKV +G + +E +R
Sbjct: 135 VVFGKVKEGMNIVEAMERFGSR 156
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 21/142 (14%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVVGGRSAPMN 93
G + F + P+T ++ F+ + G Y + F R+ GF+ Q GG N
Sbjct: 18 GRVSFELFADKVPKTAEN-FRALSTGEKGFGYKGSCFHRIIPGFMCQ-----GGNFTHHN 71
Query: 94 EVQRVEAEKTVVGE-FSD----VKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQY 147
K++ GE F D +KH GILSM + PN+ S F I LDG++
Sbjct: 72 GT----GGKSIYGEKFEDENFILKHTGPGILSMAN-AGPNTNGSQFFICTAKTEWLDGKH 126
Query: 148 AVFGKVTKGDETLRKLEGLPTR 169
VFGKV +G + +E +R
Sbjct: 127 VVFGKVKEGMNIVEAMERFGSR 148
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 21/142 (14%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVVGGRSAPMN 93
G + F + P+T ++ F+ + G Y + F R+ GF+ Q D
Sbjct: 18 GRVSFELFADKVPKTAEN-FRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFT-------- 68
Query: 94 EVQRVEAEKTVVGE-FSD----VKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQY 147
K++ GE F D +KH GILSM + PN+ S F I LDG +
Sbjct: 69 -RHNGTGGKSIYGEKFEDENFILKHTGPGILSMAN-AGPNTNGSQFFICTAKTKWLDGXH 126
Query: 148 AVFGKVTKGDETLRKLEGLPTR 169
VFGKV +G + +E +R
Sbjct: 127 VVFGKVKEGMNIVEAMERFGSR 148
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 62/149 (41%), Gaps = 29/149 (19%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLG------------CYNTNHFFRVDKGFVAQVADVV 85
G + F + V P+T ++ F+ + G Y + F RV K F+ Q D
Sbjct: 24 GRVVFELFSDVCPKTCEN-FRCLCTGEKGTGKSTQKPLHYKSXLFHRVVKDFMVQGGDFS 82
Query: 86 GGRSAPMNEVQRVEAEKTVVGEFSD----VKHVRG-ILSMG-RYSDPNSAASSFSILLGD 139
G E G F D VKH + +LSM R D N S F I
Sbjct: 83 EGNGRG--------GESIYGGFFEDESFAVKHNKEFLLSMANRGKDTN--GSQFFITTKP 132
Query: 140 APHLDGQYAVFGKVTKGDETLRKLEGLPT 168
PHLDG + VFG+V G E +R++E T
Sbjct: 133 TPHLDGHHVVFGQVISGQEVVREIENQKT 161
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 67/155 (43%), Gaps = 24/155 (15%)
Query: 28 SARVVFQTNYGD-----IEFGFYPSVAPQTVDHIFKLV---RLGCYNTNHFFRVDKGFVA 79
+ +V F GD + G + P+TVD+ L + Y + F RV K F+
Sbjct: 12 TVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMI 71
Query: 80 QVADVVGGRSAPMNEVQRVEAEKTVVGE-FSD----VKHVR-GILSMGRYSDPNSAASSF 133
Q D G K++ GE F D +KH G +SM + ++ S F
Sbjct: 72 QGGDFTRGDGT---------GGKSIYGERFPDENFKLKHYGPGWVSMAN-AGKDTNGSQF 121
Query: 134 SILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPT 168
I LDG++ VFGKV +G E +RK+E T
Sbjct: 122 FITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKT 156
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 21/143 (14%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVVGGRSAPMN 93
G + F + P+T ++ F+ + G Y + F R+ GF+ Q D
Sbjct: 18 GRVSFELFADKVPKTAEN-FRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFT-------- 68
Query: 94 EVQRVEAEKTVVGE-FSD----VKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQY 147
K++ GE F D +KH GILSM + PN+ S F I LDG +
Sbjct: 69 -RHNGTGGKSIYGEKFEDENFILKHTGPGILSMAN-AGPNTNGSQFFICTAKTEWLDGXH 126
Query: 148 AVFGKVTKGDETLRKLEGLPTRK 170
VFGKV +G + +E +R
Sbjct: 127 VVFGKVKEGMNIVEAMERFGSRN 149
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 24/154 (15%)
Query: 30 RVVFQTNYGDIEFG-----FYPSVAPQTVDHIFKLV---RLGCYNTNHFFRVDKGFVAQV 81
RV F G+ + G + P+T ++ L R Y+ F RV F+ Q
Sbjct: 12 RVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQG 71
Query: 82 ADVVGGRSAPMNEVQRVEAEKTVVGEFSDVKHVR------GILSMGRYSDPNSAASSFSI 135
D V G K++ G D ++ + G+LSM S PN+ S F I
Sbjct: 72 GDFVKGDGT---------GGKSIYGRKFDDENFQLRHEGFGVLSMAN-SGPNTNGSQFFI 121
Query: 136 LLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTR 169
LDG++ VFG+V G ++K+E + ++
Sbjct: 122 CTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSK 155
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 67/155 (43%), Gaps = 24/155 (15%)
Query: 28 SARVVFQTNYGD-----IEFGFYPSVAPQTVDHIFKLV---RLGCYNTNHFFRVDKGFVA 79
+ +V F GD + G + P+TVD+ L + Y + F RV K F+
Sbjct: 12 TVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMI 71
Query: 80 QVADVVGGRSAPMNEVQRVEAEKTVVGE-FSD----VKHVR-GILSMGRYSDPNSAASSF 133
Q D G K++ GE F D +KH G +SM + ++ S F
Sbjct: 72 QGGDFTRGDGT---------GGKSIYGERFPDENFKLKHYGPGWVSMAN-AGKDTNGSQF 121
Query: 134 SILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPT 168
I LDG++ VFGKV +G E +RK+E T
Sbjct: 122 FITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKT 156
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 62/149 (41%), Gaps = 29/149 (19%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLG------------CYNTNHFFRVDKGFVAQVADVV 85
G + F + V P+T ++ F+ + G Y + F RV K F+ Q D
Sbjct: 24 GRVVFELFSDVCPKTCEN-FRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFS 82
Query: 86 GGRSAPMNEVQRVEAEKTVVGEFSD----VKHVRG-ILSMG-RYSDPNSAASSFSILLGD 139
G E G F D VKH + +LSM R D N S F I
Sbjct: 83 EGNGRG--------GESIYGGFFEDESFAVKHNKEFLLSMANRGKDTN--GSQFFITTKP 132
Query: 140 APHLDGQYAVFGKVTKGDETLRKLEGLPT 168
PHLDG + VFG+V G E +R++E T
Sbjct: 133 TPHLDGHHVVFGQVISGQEVVREIENQKT 161
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 21/142 (14%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVVGGRSAPMN 93
G + F + P+T ++ F+ + G Y + F R+ GF+ Q D
Sbjct: 18 GRVSFELFADKVPKTAEN-FRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFT-------- 68
Query: 94 EVQRVEAEKTVVGE-FSD----VKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQY 147
K++ GE F D +KH GIL+M + PN+ S F I LDG++
Sbjct: 69 -RHNGTGGKSIYGEKFEDENFILKHTGPGILTMAN-AGPNTNGSQFFICTAKTEWLDGKH 126
Query: 148 AVFGKVTKGDETLRKLEGLPTR 169
VFGKV +G + +E +R
Sbjct: 127 VVFGKVKEGMNIVEAMERFGSR 148
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 21/142 (14%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVVGGRSAPMN 93
G + F + P+T ++ F+ + G Y + F R+ GF+ Q D
Sbjct: 22 GRVSFELFADKVPKTAEN-FRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFT-------- 72
Query: 94 EVQRVEAEKTVVGE-FSD----VKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQY 147
K++ GE F D +KH GILSM + PN+ S F I LDG +
Sbjct: 73 -RHNGTGGKSIYGEKFEDENFILKHTGPGILSMAN-AGPNTNGSQFFICTAKTKWLDGXH 130
Query: 148 AVFGKVTKGDETLRKLEGLPTR 169
VFGKV +G + +E +R
Sbjct: 131 VVFGKVKEGMNIVEAMERFGSR 152
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 21/142 (14%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVVGGRSAPMN 93
G + F + P+T ++ F+ + G Y + F ++ GF+ Q D
Sbjct: 18 GRVSFELFADKVPKTAEN-FRALSTGEKGFGYKGSCFHKIIPGFMCQGGDFT-------- 68
Query: 94 EVQRVEAEKTVVGE-FSD----VKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQY 147
K++ GE F D +KH GILSM + PN+ S F I LDG++
Sbjct: 69 -RHNGTGGKSIYGEKFEDENFILKHTGPGILSMAN-AGPNTNGSQFFICTAKTEWLDGKH 126
Query: 148 AVFGKVTKGDETLRKLEGLPTR 169
VFGKV +G + +E +R
Sbjct: 127 VVFGKVKEGMNIVEAMERFGSR 148
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 21/137 (15%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVVGGRSAPMN 93
G I+F + V P+T + F+ + G Y +HF RV F+ Q D G
Sbjct: 16 GTIKFKLFDDVVPKTAAN-FRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGT--- 71
Query: 94 EVQRVEAEKTVVG-EFSD----VKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQY 147
K++ G +F+D +KH + G+LSM + PN+ S F I LDG++
Sbjct: 72 ------GGKSIYGAKFADENFQLKHNKPGLLSMAN-AGPNTNGSQFFITTVVTSWLDGKH 124
Query: 148 AVFGKVTKGDETLRKLE 164
VFG+V G ++ +E
Sbjct: 125 VVFGEVIDGMNVVKAIE 141
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 62/149 (41%), Gaps = 29/149 (19%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLG------------CYNTNHFFRVDKGFVAQVADVV 85
G + F + V P+T ++ F+ + G Y + F RV K F+ Q D
Sbjct: 41 GRVVFELFSDVCPKTCEN-FRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGD-- 97
Query: 86 GGRSAPMNEVQRVEAEKTVVGEFSD----VKHVRG-ILSMG-RYSDPNSAASSFSILLGD 139
+E E G F D VKH +LSM R D N S F I
Sbjct: 98 ------FSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTN--GSQFFITTKP 149
Query: 140 APHLDGQYAVFGKVTKGDETLRKLEGLPT 168
PHLDG + VFG+V G E +R++E T
Sbjct: 150 TPHLDGHHVVFGQVISGQEVVREIENQKT 178
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 21/142 (14%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVVGGRSAPMN 93
G + F + P+T ++ F+ + G Y + F R+ GF+ Q D
Sbjct: 17 GRVSFELFADKVPKTAEN-FRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFT-------- 67
Query: 94 EVQRVEAEKTVVGE-FSD----VKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQY 147
K++ GE F D +KH GILSM + PN+ S F I LDG++
Sbjct: 68 -HHNGTGGKSIYGEKFEDENFILKHTGPGILSMAN-AGPNTNGSQFFICTAKTEWLDGKH 125
Query: 148 AVFGKVTKGDETLRKLEGLPTR 169
VFGKV +G + ++ +R
Sbjct: 126 VVFGKVKEGMNIVEAMKRFGSR 147
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLG---CYNTNHFFRVDKGFVAQVADVV-----GGRS 89
G I G + P+T + +L + Y + F RV F+ Q D GGRS
Sbjct: 21 GRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRS 80
Query: 90 APMNEVQRVEAEKTVVGEFSDVKHVRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAV 149
+ EK F + G LSM + ++ S F I P LDG++ V
Sbjct: 81 --------IYGEKFADENFKLKHYGAGWLSMAN-AGADTNGSQFFITTVKTPWLDGRHVV 131
Query: 150 FGKVTKGDETLRKLE 164
FGK+ +G + +RK+E
Sbjct: 132 FGKILEGMDVVRKIE 146
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 21/142 (14%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVVGGRSAPMN 93
G + F + P+T ++ F+ + G Y + F R+ GF+ Q D
Sbjct: 17 GRVSFELFADKVPKTAEN-FRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFT-------- 67
Query: 94 EVQRVEAEKTVVGE-FSD----VKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQY 147
K++ GE F D +KH GILSM + PN+ S F I LDG++
Sbjct: 68 -RHNGTGGKSIYGEKFEDENFILKHTGPGILSMAN-AGPNTNGSQFFICTAKTKWLDGKH 125
Query: 148 AVFGKVTKGDETLRKLEGLPTR 169
VFG V +G + +E +R
Sbjct: 126 VVFGAVKEGMNIVEAMERFGSR 147
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNH---------FFRVDKGFVAQVADVVGGR 88
G +F + ++ P+T ++ F+ G Y N+ F RV K F+ Q D +
Sbjct: 74 GKFKFELFQNIVPKTSEN-FRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHN 132
Query: 89 SAPMNEVQRVEAEKTVVGEFSDVKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQY 147
+ + EK F D+KH + G+LSM S PN+ F I LDG+
Sbjct: 133 GSGS---LSIYGEKFDDENF-DIKHDKEGLLSMAN-SGPNTNGCQFFITTKKCEWLDGKN 187
Query: 148 AVFGKVTKGDE--TLRKLEGL 166
VFG++ D L+K+E +
Sbjct: 188 VVFGRIIDNDSLLLLKKIENV 208
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 18/128 (14%)
Query: 64 CYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVGEFSDVKHVRG-----IL 118
CY + F R+ F+ Q D G E +F D V +L
Sbjct: 70 CYTGSFFHRIIPQFMIQGGDFTRGDG--------TGGESIYGSKFRDENFVYTHDAPFLL 121
Query: 119 SMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPT 178
SM + PN+ S F I P LDG++ VFGKV +G E ++ +E ++ PT
Sbjct: 122 SMAN-AGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNG----KPT 176
Query: 179 ERITIHSS 186
+ + I +S
Sbjct: 177 KSVCITAS 184
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 63/138 (45%), Gaps = 21/138 (15%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVV-----GGR 88
G I F Y P+T + F+ + G Y + F RV F+ Q D GG+
Sbjct: 17 GRIVFKLYDEAVPKTAKN-FRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGK 75
Query: 89 SAPMNEVQRVEAEKTVVGEFSDVKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQY 147
S + EK F VKH + G+LSM + N+ S F I LDG++
Sbjct: 76 S--------IYGEKFADENFQ-VKHTKPGLLSMAN-AGANTNGSQFFITTVPTSWLDGKH 125
Query: 148 AVFGKVTKGDETLRKLEG 165
VFG+V +G + +RK+EG
Sbjct: 126 VVFGEVIEGLDIVRKVEG 143
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 63/138 (45%), Gaps = 21/138 (15%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVV-----GGR 88
G I F Y P+T + F+ + G Y + F RV F+ Q D GG+
Sbjct: 18 GRIVFKLYDEAVPKTAKN-FRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGK 76
Query: 89 SAPMNEVQRVEAEKTVVGEFSDVKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQY 147
S + EK F VKH + G+LSM + N+ S F I LDG++
Sbjct: 77 S--------IYGEKFADENFQ-VKHTKPGLLSMAN-AGANTNGSQFFITTVPTSWLDGKH 126
Query: 148 AVFGKVTKGDETLRKLEG 165
VFG+V +G + +RK+EG
Sbjct: 127 VVFGEVIEGLDIVRKVEG 144
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 19/143 (13%)
Query: 34 QTNYGDIEFGFYPSVAPQTVDHIFKLVRLGC---YNTNHFFRVDKGFVAQVADVV----- 85
+T G I F + P+T + +L + Y + F R+ F+ Q D
Sbjct: 18 ETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGT 77
Query: 86 GGRSAPMNEVQRVEAEKTVVGEFSDVKHVRGILSMGRYSDPNSAASSFSILLGDAPHLDG 145
GGRS + +K FS +GILSM + PN+ S F I LDG
Sbjct: 78 GGRS--------IYGDKFADENFSRKHDKKGILSMAN-AGPNTNGSQFFITTAVTSWLDG 128
Query: 146 QYAVFGKVT--KGDETLRKLEGL 166
++ VFG+V K ++++E L
Sbjct: 129 KHVVFGEVADEKSYSVVKEIEAL 151
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 21/142 (14%)
Query: 38 GDIEFGFYPSVAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVVGGRSAPMN 93
G + F + P+T ++ F+ + G Y + F R+ GF Q D
Sbjct: 17 GRVSFELFADKVPKTAEN-FRALSTGEKGFGYKGSCFHRIIPGFXCQGGDFT-------- 67
Query: 94 EVQRVEAEKTVVGE-FSD----VKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQY 147
K++ GE F D +KH GILS + PN+ S F I LDG++
Sbjct: 68 -RHNGTGGKSIYGEKFEDENFILKHTGPGILSXAN-AGPNTNGSQFFICTAKTEWLDGKH 125
Query: 148 AVFGKVTKGDETLRKLEGLPTR 169
VFGKV +G + E +R
Sbjct: 126 VVFGKVKEGXNIVEAXERFGSR 147
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 111 VKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTR 169
+KH G+LSM S PN+ S F + LDG++ VFG+VT+G + LR++E +
Sbjct: 90 LKHTGPGLLSMAN-SGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGS- 147
Query: 170 KEGIFVMPTERITIHSSYYY 189
K+G P +++ I Y
Sbjct: 148 KDG---KPKQKVIIADCGEY 164
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 111 VKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTR 169
+KH G+LSM S PN+ S F + LDG++ VFG+VT+G + LR++E +
Sbjct: 98 LKHTGPGLLSMAN-SGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGS- 155
Query: 170 KEGIFVMPTERITIHSSYYY 189
K+G P +++ I Y
Sbjct: 156 KDG---KPKQKVIIADCGEY 172
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 58/146 (39%), Gaps = 28/146 (19%)
Query: 29 ARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGGR 88
+VV T+ GD++ + P + +L G Y F RV K F+ Q D G
Sbjct: 22 GKVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTG-- 79
Query: 89 SAPMNEVQRVEAEKTVVGEFSDVK-HVR---------GILSMGRYSDP----------NS 128
R A+ T G+ DV+ H R G+ ++GR S +
Sbjct: 80 ------TGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGT 133
Query: 129 AASSFSILLGDAPHLDGQYAVFGKVT 154
+ F I L A L+ Y +FGKVT
Sbjct: 134 NGNQFFITLARADVLNNAYTLFGKVT 159
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 65 YNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQ----RVEAEKTVVGEFSDVKHVRGILSM 120
Y ++ F RV F+ Q D G + R E+ G + + G LSM
Sbjct: 59 YKSSVFHRVIPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGL----GCLSM 114
Query: 121 GRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGL 166
+ PN+ S F I P LDG++ VFG+V G + ++K+E L
Sbjct: 115 AN-AGPNTNGSQFFICTAATPWLDGKHVVFGRVIDGLDVVKKVERL 159
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 21/132 (15%)
Query: 48 VAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKT 103
V P+T ++ F+ + G Y + F RV F+ Q D K+
Sbjct: 28 VVPKTAEN-FRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTN---------HNGTGGKS 77
Query: 104 VVGE-FSD----VKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGD 157
+ G F D +KHV G+LSM + PN+ S F I LDG++ VFG V +G
Sbjct: 78 IYGSRFPDENFTLKHVGPGVLSMAN-AGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGM 136
Query: 158 ETLRKLEGLPTR 169
+ ++K+E ++
Sbjct: 137 DVVKKIESFGSK 148
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 21/132 (15%)
Query: 48 VAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKT 103
V P+T ++ F+ + G Y + F RV F+ Q D K+
Sbjct: 29 VVPKTAEN-FRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTN---------HNGTGGKS 78
Query: 104 VVGE-FSD----VKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGD 157
+ G F D +KHV G+LSM + PN+ S F I LDG++ VFG V +G
Sbjct: 79 IYGSRFPDENFTLKHVGPGVLSMAN-AGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGM 137
Query: 158 ETLRKLEGLPTR 169
+ ++K+E ++
Sbjct: 138 DVVKKIESFGSK 149
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 21/132 (15%)
Query: 48 VAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKT 103
V P+T ++ F+ + G Y + F RV F+ Q D K+
Sbjct: 28 VVPKTAEN-FRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTN---------HNGTGGKS 77
Query: 104 VVGE-FSD----VKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGD 157
+ G F D +KHV G+LSM + PN+ S F I LDG++ VFG V +G
Sbjct: 78 IYGSRFPDENFTLKHVGPGVLSMAN-AGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGM 136
Query: 158 ETLRKLEGLPTR 169
+ ++K+E ++
Sbjct: 137 DVVKKIESFGSK 148
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 21/132 (15%)
Query: 48 VAPQTVDHIFKLVRLG----CYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKT 103
V P+T ++ F+ + G Y + F RV F+ Q D K+
Sbjct: 27 VVPKTAEN-FRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTN---------HNGTGGKS 76
Query: 104 VVGE-FSD----VKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGD 157
+ G F D +KHV G+LSM + PN+ S F I LDG++ VFG V +G
Sbjct: 77 IYGSRFPDENFTLKHVGPGVLSMAN-AGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGM 135
Query: 158 ETLRKLEGLPTR 169
+ ++K+E ++
Sbjct: 136 DVVKKIESFGSK 147
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 16/108 (14%)
Query: 70 FFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVGE-FSD----VKHVR-GILSMGRY 123
F R+ K F+ Q D Q +++ GE F D KH + G+LSM
Sbjct: 73 FHRIIKKFMIQGGDFSN---------QNGTGGESIYGEKFEDENFHYKHDKEGLLSMAN- 122
Query: 124 SDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKE 171
+ N+ S F I PHLDG++ VFG+V KG + LE + + E
Sbjct: 123 AGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGE 170
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 65/151 (43%), Gaps = 24/151 (15%)
Query: 28 SARVVFQTNYGD-----IEFGFYPSVAPQTVDHIFKLV---RLGCYNTNHFFRVDKGFVA 79
+ +V F GD I G + +V P+TV++ L + Y + F RV K F+
Sbjct: 7 TDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMI 66
Query: 80 QVADVVGGRSAPMNEVQRVEAEKTVVGE-FSD----VKHVR-GILSMGRYSDPNSAASSF 133
Q D + ++ GE F D +KH G +SM + P++ S F
Sbjct: 67 QGGDFT---------ARDGTGGMSIYGETFPDENFKLKHYGIGWVSMAN-AGPDTNGSQF 116
Query: 134 SILLGDAPHLDGQYAVFGKVTKGDETLRKLE 164
I L LDG++ VFGKV G + +E
Sbjct: 117 FITLTKPTWLDGKHVVFGKVLDGMTVVHSIE 147
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 65 YNTNHFFRVDKGFVAQVADVV-----GGRSAPMNEVQRVEAEKTVVGEFSDVKHVR-GIL 118
Y + F R+ GF+ Q D GGRS + EK F ++KH + GIL
Sbjct: 72 YKGSTFHRIIPGFMVQGGDYTAHNGTGGRS--------IYGEKFPDENF-ELKHTKEGIL 122
Query: 119 SMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKL 163
SM ++ S F I LG LD ++ VFG+V +G + + K+
Sbjct: 123 SMAN-CGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKI 166
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 111 VKHVR-GILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTR 169
+KH G+LS S PN+ S F + LDG++ VFG+VT+G + LR++E +
Sbjct: 99 LKHTGPGLLSXAN-SGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGS- 156
Query: 170 KEGIFVMPTERITIHSSYYY 189
K+G P +++ I Y
Sbjct: 157 KDG---KPKQKVIIADCGEY 173
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 72/181 (39%), Gaps = 35/181 (19%)
Query: 26 LGSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVR-LGCYNTNH--------------F 70
L +A TN GDI+ + + AP+TV + L + Y+T + F
Sbjct: 21 LATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVF 80
Query: 71 FRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVGEFSDVKHVR------GILSMGRYS 124
RV +GF+ Q D +F+D H +L+M +
Sbjct: 81 HRVIQGFMIQGGDPT------------GTGRGGPGYKFADEFHPELQFDKPYLLAMAN-A 127
Query: 125 DPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERITIH 184
P + S F I +G PHL+ ++ +FG+V E+ R +E + PT+ + I
Sbjct: 128 GPGTNGSQFFITVGKTPHLNRRHTIFGEVIDA-ESQRVVEAISKTATDGNDRPTDPVVIE 186
Query: 185 S 185
S
Sbjct: 187 S 187
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 65 YNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVGEFSDVKHVRGILSMGRYS 124
+ + F R+ F+ Q D G + + EK F + G+LSM +
Sbjct: 55 FKGSKFHRIIPNFMIQGGDFTRGNGTGG---ESIYGEKFPDENFKEKHTGPGVLSMAN-A 110
Query: 125 DPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLE 164
PN+ S F + LDG++ VFG+V +G + ++ +E
Sbjct: 111 GPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVE 150
>pdb|3RFY|A Chain A, Crystal Structure Of Arabidopsis Thaliana Cyclophilin 38
(Atcyp38)
Length = 369
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 55/146 (37%), Gaps = 31/146 (21%)
Query: 49 APQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG---GRSAPMNEVQR-VEAEKTV 104
AP T + LV Y+ R D GFV Q D G G P E R V E V
Sbjct: 199 APVTAGNFVDLVERHFYDGMEIQRSD-GFVVQTGDPEGPAEGFIDPSTEKTRTVPLEIMV 257
Query: 105 VGEFSDVK------------------HVRGILSMGRYSDPNSAASSFSILL--------G 138
GE + + G ++M R N + SS L
Sbjct: 258 TGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPS 317
Query: 139 DAPHLDGQYAVFGKVTKGDETLRKLE 164
++ LDG+YAVFG VT ++ L L+
Sbjct: 318 NSNILDGRYAVFGYVTDNEDFLADLK 343
>pdb|2VAT|A Chain A, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|B Chain B, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|C Chain C, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|D Chain D, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|E Chain E, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|F Chain F, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|G Chain G, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|H Chain H, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|I Chain I, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|J Chain J, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|K Chain K, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|L Chain L, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
Length = 444
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 14/99 (14%)
Query: 73 VDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVGEFSDVKHVRGILSMGRYSDPNSAASS 132
+D+ V Q+A VVG M+ T+ F ++VR I+ + + ++
Sbjct: 193 LDRLGVRQIAAVVGASMGGMH---------TLEWAFFGPEYVRKIVPIATSCRQSGWCAA 243
Query: 133 F-----SILLGDAPHLDGQYAVFGKVTKGDETLRKLEGL 166
+ + D +LDG+Y V + +G ET RK+ L
Sbjct: 244 WFETQRQCIYDDPKYLDGEYDVDDQPVRGLETARKIANL 282
>pdb|2VAV|A Chain A, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Dac-Soak)
pdb|2VAV|B Chain B, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Dac-Soak)
pdb|2VAV|C Chain C, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Dac-Soak)
pdb|2VAV|D Chain D, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Dac-Soak)
pdb|2VAV|E Chain E, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Dac-Soak)
pdb|2VAV|F Chain F, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Dac-Soak)
pdb|2VAV|G Chain G, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Dac-Soak)
pdb|2VAV|H Chain H, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Dac-Soak)
pdb|2VAV|I Chain I, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Dac-Soak)
pdb|2VAV|J Chain J, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Dac-Soak)
pdb|2VAV|K Chain K, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Dac-Soak)
pdb|2VAV|L Chain L, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Dac-Soak)
pdb|2VAX|A Chain A, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Cephalosporin C-Soak)
pdb|2VAX|B Chain B, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Cephalosporin C-Soak)
pdb|2VAX|C Chain C, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Cephalosporin C-Soak)
pdb|2VAX|D Chain D, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Cephalosporin C-Soak)
pdb|2VAX|E Chain E, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Cephalosporin C-Soak)
pdb|2VAX|F Chain F, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Cephalosporin C-Soak)
pdb|2VAX|G Chain G, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Cephalosporin C-Soak)
pdb|2VAX|H Chain H, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Cephalosporin C-Soak)
pdb|2VAX|I Chain I, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Cephalosporin C-Soak)
pdb|2VAX|J Chain J, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Cephalosporin C-Soak)
pdb|2VAX|K Chain K, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Cephalosporin C-Soak)
pdb|2VAX|L Chain L, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Cephalosporin C-Soak)
Length = 444
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 14/99 (14%)
Query: 73 VDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVGEFSDVKHVRGILSMGRYSDPNSAASS 132
+D+ V Q+A VVG M+ T+ F ++VR I+ + + ++
Sbjct: 193 LDRLGVRQIAAVVGAXMGGMH---------TLEWAFFGPEYVRKIVPIATSCRQSGWCAA 243
Query: 133 F-----SILLGDAPHLDGQYAVFGKVTKGDETLRKLEGL 166
+ + D +LDG+Y V + +G ET RK+ L
Sbjct: 244 WFETQRQCIYDDPKYLDGEYDVDDQPVRGLETARKIANL 282
>pdb|1UW4|B Chain B, The Structural Basis Of The Interaction Between Nonsense
Mediated Decay Factors Upf2 And Upf3
pdb|1UW4|D Chain D, The Structural Basis Of The Interaction Between Nonsense
Mediated Decay Factors Upf2 And Upf3
Length = 248
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 31 VVFQTNYGDIEFGFYPSVAPQTVD---HIFKLVRLGC 64
V+F+T Y FG P +P ++D H+F+ +RL C
Sbjct: 121 VIFRTLYSFTSFGVNPDGSPSSLDPPEHLFR-IRLVC 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,274,966
Number of Sequences: 62578
Number of extensions: 257112
Number of successful extensions: 571
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 475
Number of HSP's gapped (non-prelim): 82
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)