Query 027457
Match_columns 223
No_of_seqs 166 out of 1396
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 10:11:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10903 peptidyl-prolyl cis-t 100.0 1.3E-46 2.8E-51 307.6 21.3 181 1-189 2-189 (190)
2 KOG0546 HSP90 co-chaperone CPR 100.0 1E-47 2.2E-52 331.6 13.2 157 27-191 7-180 (372)
3 KOG0880 Peptidyl-prolyl cis-tr 100.0 7.5E-47 1.6E-51 301.5 16.8 159 26-192 37-205 (217)
4 KOG0881 Cyclophilin type pepti 100.0 9.1E-48 2E-52 286.8 9.8 156 24-189 5-163 (164)
5 cd01923 cyclophilin_RING cyclo 100.0 3.1E-46 6.6E-51 297.9 19.1 155 30-194 1-158 (159)
6 COG0652 PpiB Peptidyl-prolyl c 100.0 2.5E-46 5.5E-51 295.0 16.8 153 30-189 1-157 (158)
7 cd01921 cyclophilin_RRM cyclop 100.0 4.6E-46 1E-50 298.9 18.1 161 32-196 1-166 (166)
8 cd01928 Cyclophilin_PPIL3_like 100.0 8.6E-45 1.9E-49 287.8 18.4 149 30-188 2-153 (153)
9 KOG0883 Cyclophilin type, U bo 100.0 2.2E-45 4.8E-50 317.9 14.8 169 27-205 276-447 (518)
10 cd01927 cyclophilin_WD40 cyclo 100.0 2.7E-44 5.9E-49 283.5 17.2 145 32-186 1-148 (148)
11 PRK10791 peptidyl-prolyl cis-t 100.0 2.3E-43 5E-48 282.4 18.2 153 30-189 1-163 (164)
12 PTZ00221 cyclophilin; Provisio 100.0 2.9E-43 6.2E-48 296.4 19.3 159 27-197 51-227 (249)
13 cd01922 cyclophilin_SpCYP2_lik 100.0 1.7E-43 3.6E-48 278.4 16.6 143 32-185 1-146 (146)
14 cd01925 cyclophilin_CeCYP16-li 100.0 4.6E-43 9.9E-48 282.7 19.3 159 28-196 5-167 (171)
15 KOG0879 U-snRNP-associated cyc 100.0 1.4E-43 3E-48 267.2 11.8 154 27-188 9-176 (177)
16 PLN03149 peptidyl-prolyl isome 100.0 3E-42 6.6E-47 281.1 18.8 156 26-189 16-186 (186)
17 PTZ00060 cyclophilin; Provisio 100.0 9.8E-42 2.1E-46 277.6 19.8 155 27-190 14-183 (183)
18 cd01920 cyclophilin_EcCYP_like 100.0 5.6E-42 1.2E-46 272.3 16.7 147 33-186 2-155 (155)
19 cd01926 cyclophilin_ABH_like c 100.0 1.6E-41 3.6E-46 272.0 18.4 150 29-187 1-164 (164)
20 KOG0882 Cyclophilin-related pe 100.0 4.8E-41 1E-45 295.8 12.4 152 27-188 403-557 (558)
21 KOG0884 Similar to cyclophilin 100.0 1.4E-40 3E-45 247.0 11.7 155 30-193 2-159 (161)
22 PF00160 Pro_isomerase: Cyclop 100.0 2.7E-39 5.8E-44 256.4 16.5 151 30-188 1-155 (155)
23 cd00317 cyclophilin cyclophili 100.0 4.2E-39 9.1E-44 253.0 17.0 144 32-185 1-146 (146)
24 KOG0885 Peptidyl-prolyl cis-tr 100.0 1.4E-39 3E-44 280.7 13.2 162 27-198 11-176 (439)
25 KOG0415 Predicted peptidyl pro 100.0 1.2E-38 2.6E-43 273.4 13.4 164 30-197 2-170 (479)
26 KOG0111 Cyclophilin-type pepti 100.0 3.9E-39 8.4E-44 261.4 9.7 158 23-189 131-297 (298)
27 cd01924 cyclophilin_TLP40_like 100.0 9.6E-37 2.1E-41 246.7 14.4 133 34-166 3-165 (176)
28 KOG0865 Cyclophilin type pepti 100.0 1.1E-31 2.4E-36 213.4 9.0 154 27-189 2-167 (167)
29 KOG0882 Cyclophilin-related pe 98.3 1.5E-06 3.3E-11 78.3 6.4 156 30-189 100-262 (558)
30 TIGR03268 methan_mark_3 putati 96.3 0.029 6.4E-07 51.8 9.5 114 37-166 374-496 (503)
31 PRK00969 hypothetical protein; 95.5 0.14 3.1E-06 47.5 10.4 112 37-165 377-497 (508)
32 PRK00969 hypothetical protein; 95.5 0.16 3.4E-06 47.2 10.6 120 27-168 49-170 (508)
33 COG4070 Predicted peptidyl-pro 94.7 0.16 3.4E-06 45.9 7.9 23 39-61 377-399 (512)
34 COG4070 Predicted peptidyl-pro 94.6 0.081 1.8E-06 47.6 5.9 99 39-166 204-306 (512)
35 TIGR03268 methan_mark_3 putati 94.3 0.59 1.3E-05 43.4 10.8 119 27-167 45-166 (503)
36 PF12903 DUF3830: Protein of u 93.4 0.25 5.4E-06 38.8 5.8 25 36-60 6-30 (147)
37 COG5633 Predicted periplasmic 93.2 0.092 2E-06 39.4 3.0 37 1-37 1-37 (123)
38 PF08139 LPAM_1: Prokaryotic m 90.7 0.21 4.5E-06 27.2 1.7 19 1-19 7-25 (25)
39 PF04126 Cyclophil_like: Cyclo 81.6 18 0.00038 27.2 8.7 100 30-165 2-113 (120)
40 PRK10954 periplasmic protein d 67.2 11 0.00023 30.9 4.6 34 24-58 22-57 (207)
41 PRK11627 hypothetical protein; 64.9 11 0.00025 30.8 4.3 22 1-22 2-23 (192)
42 PRK13792 lysozyme inhibitor; P 62.3 18 0.00039 27.7 4.7 24 1-24 1-26 (127)
43 PF10880 DUF2673: Protein of u 61.5 9 0.00019 25.0 2.4 18 1-18 1-18 (65)
44 TIGR03352 VI_chp_3 type VI sec 61.2 19 0.00041 28.1 4.8 54 8-61 7-72 (146)
45 PRK11372 lysozyme inhibitor; P 59.1 33 0.00072 25.4 5.5 45 1-46 3-48 (109)
46 PRK10449 heat-inducible protei 58.9 9.4 0.0002 29.5 2.7 21 1-21 1-21 (140)
47 PF11153 DUF2931: Protein of u 58.7 16 0.00035 30.2 4.2 23 1-24 1-23 (216)
48 PF06291 Lambda_Bor: Bor prote 57.7 7.9 0.00017 28.2 1.9 20 1-20 1-20 (97)
49 COG5429 Uncharacterized secret 56.2 34 0.00073 29.1 5.6 35 23-64 37-71 (261)
50 PRK13883 conjugal transfer pro 54.8 11 0.00024 29.8 2.4 19 1-19 1-19 (151)
51 PRK13861 type IV secretion sys 52.5 30 0.00065 30.3 5.0 46 1-46 2-60 (292)
52 PF05643 DUF799: Putative bact 51.9 15 0.00032 30.8 2.8 22 1-22 1-22 (215)
53 COG5567 Predicted small peripl 50.0 13 0.00028 24.2 1.7 18 1-18 1-18 (58)
54 PRK12407 flgH flagellar basal 49.0 19 0.00041 30.2 3.1 19 1-19 1-19 (221)
55 PF11106 YjbE: Exopolysacchari 47.7 16 0.00035 25.3 2.1 19 1-19 1-19 (80)
56 PRK11443 lipoprotein; Provisio 44.6 23 0.00049 27.0 2.7 20 1-21 1-20 (124)
57 PTZ00443 Thioredoxin domain-co 43.0 47 0.001 27.8 4.6 51 1-51 1-66 (224)
58 PF06138 Chordopox_E11: Chordo 42.8 74 0.0016 24.4 5.1 48 29-76 4-61 (130)
59 PF13617 Lipoprotein_19: YnbE- 42.1 56 0.0012 21.5 3.9 16 3-18 2-17 (59)
60 PRK13835 conjugal transfer pro 42.0 26 0.00057 27.4 2.7 21 1-21 1-21 (145)
61 TIGR02052 MerP mercuric transp 41.3 20 0.00043 23.9 1.9 20 1-20 1-20 (92)
62 PF10913 DUF2706: Protein of u 40.7 37 0.00081 21.8 2.8 23 1-23 1-26 (60)
63 PHA03001 putative virion core 39.0 73 0.0016 24.4 4.6 48 29-76 4-60 (132)
64 PF12276 DUF3617: Protein of u 38.3 57 0.0012 25.3 4.2 36 1-36 1-39 (162)
65 TIGR03516 ppisom_GldI peptidyl 34.4 42 0.0009 27.1 2.9 20 1-20 1-20 (177)
66 PF00135 COesterase: Carboxyle 33.7 32 0.00069 31.7 2.4 38 146-189 209-246 (535)
67 PRK10756 hypothetical protein; 33.5 95 0.0021 24.6 4.6 12 36-47 36-47 (157)
68 PRK11671 mltC murein transglyc 33.4 97 0.0021 28.0 5.3 22 30-51 75-96 (359)
69 PF02344 Myc-LZ: Myc leucine z 32.0 76 0.0016 18.2 2.8 25 198-222 8-32 (32)
70 PF05325 DUF730: Protein of un 31.1 1.1E+02 0.0025 22.2 4.3 38 183-220 63-100 (122)
71 cd02962 TMX2 TMX2 family; comp 30.8 1.5E+02 0.0033 23.1 5.5 36 38-73 48-86 (152)
72 COG4314 NosL Predicted lipopro 30.8 51 0.0011 26.3 2.7 20 1-20 1-21 (176)
73 PRK09934 fimbrial-like adhesin 29.9 35 0.00077 27.0 1.8 15 1-15 1-15 (171)
74 PRK09810 entericidin A; Provis 29.8 51 0.0011 20.1 2.0 10 1-10 2-11 (41)
75 COG3045 CreA Uncharacterized p 28.5 1.6E+02 0.0036 23.3 5.1 18 30-47 32-49 (165)
76 PRK02710 plastocyanin; Provisi 28.2 1.1E+02 0.0023 22.7 4.1 13 28-40 30-42 (119)
77 PTZ00102 disulphide isomerase; 27.4 82 0.0018 28.8 4.0 16 37-52 49-64 (477)
78 PF11777 DUF3316: Protein of u 26.4 48 0.001 24.5 1.9 16 1-16 1-16 (114)
79 PF11873 DUF3393: Domain of un 26.4 1.9E+02 0.0041 24.0 5.5 22 30-51 89-110 (204)
80 PF12099 DUF3575: Protein of u 26.1 74 0.0016 25.9 3.1 50 1-50 1-63 (189)
81 PRK15211 fimbrial chaperone pr 25.5 77 0.0017 26.6 3.2 44 1-46 3-46 (229)
82 PF02402 Lysis_col: Lysis prot 25.5 20 0.00044 22.1 -0.3 13 1-13 1-13 (46)
83 PF12396 DUF3659: Protein of u 25.3 97 0.0021 20.7 3.0 28 143-172 16-43 (64)
84 PF11948 DUF3465: Protein of u 25.0 58 0.0013 25.1 2.1 21 1-21 1-21 (131)
85 TIGR03780 Bac_Flav_CT_N Bacter 24.4 1.9E+02 0.004 25.4 5.3 11 1-11 1-11 (285)
86 PF12052 VGCC_beta4Aa_N: Volta 24.4 72 0.0016 19.4 2.0 24 197-220 18-42 (42)
87 PRK15208 long polar fimbrial c 24.1 1E+02 0.0022 25.8 3.6 45 1-46 1-45 (228)
88 PF05913 DUF871: Bacterial pro 24.1 52 0.0011 29.7 1.9 51 112-164 297-348 (357)
89 TIGR00548 lolB outer membrane 23.7 66 0.0014 26.3 2.4 20 1-20 1-20 (202)
90 COG5294 Uncharacterized protei 23.5 61 0.0013 24.2 1.9 18 1-18 1-18 (113)
91 PRK09838 periplasmic copper-bi 23.4 61 0.0013 24.3 1.9 19 1-19 1-19 (115)
92 PF07437 YfaZ: YfaZ precursor; 23.0 1.2E+02 0.0025 24.6 3.6 19 1-19 1-19 (180)
93 PRK10626 hypothetical protein; 22.2 1.9E+02 0.0042 24.6 4.9 16 30-45 38-53 (239)
94 PF08194 DIM: DIM protein; In 21.0 1.1E+02 0.0024 18.1 2.3 6 1-6 1-6 (36)
95 COG5645 Predicted periplasmic 20.9 60 0.0013 22.6 1.3 19 1-19 1-19 (80)
96 PRK15240 resistance to complem 20.6 96 0.0021 25.1 2.7 17 1-17 1-17 (185)
97 PF07197 DUF1409: Protein of u 20.6 47 0.001 21.2 0.7 40 183-222 11-50 (51)
98 PRK12580 outer membrane protea 20.4 1.5E+02 0.0032 26.3 3.9 20 24-43 27-46 (312)
99 PRK14864 putative biofilm stre 20.4 2.5E+02 0.0053 20.7 4.6 35 36-74 50-84 (104)
100 PF06316 Ail_Lom: Enterobacter 20.3 95 0.0021 25.7 2.6 15 1-15 1-15 (199)
101 PRK10386 curli assembly protei 20.3 1.6E+02 0.0034 22.7 3.6 18 1-18 1-18 (130)
102 PF08415 NRPS: Nonribosomal pe 20.2 91 0.002 20.0 2.1 28 154-186 4-31 (58)
103 PRK10081 entericidin B membran 20.0 76 0.0017 20.0 1.5 10 1-10 2-11 (48)
No 1
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=1.3e-46 Score=307.64 Aligned_cols=181 Identities=28% Similarity=0.429 Sum_probs=147.4
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEEeceeEEEEEcCCCChhhHHHHHHhhcCCccCCceEEEEecCCEEE
Q 027457 1 MLNVIRIFLTLITLIGTASSQEDPQLGSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQ 80 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~ri~~~~~iq 80 (223)
|++++...++++++.++. ++...+.++++|.|+|+.|+|+||||.+.||++|+||++||+.|||+|+.|||++|+|++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQ 80 (190)
T PRK10903 2 FKSTLAAMAAVFALSALS-PAALAAKGDPHVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQ 80 (190)
T ss_pred hHHHHHHHHHHHHHhhcc-ccccccCCCcEEEEEeccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEE
Confidence 556655444444444333 2222334678899999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCCCcchhhcccCccccCC-cCCCCCCccEEEEecCCCCCCCcceEEEEeCCCCCCCC-----CCcEEEEEE
Q 027457 81 VADVVGGRSAPMNEVQRVEAEKTVVGE-FSDVKHVRGILSMGRYSDPNSAASSFSILLGDAPHLDG-----QYAVFGKVT 154 (223)
Q Consensus 81 ~Gd~~~~~~~~~~~~~~~~~g~~~~~e-~~~l~h~~G~lsma~~~~~~~~~sqFfItl~~~~~ldg-----~~~vFG~Vv 154 (223)
|||+....+.. ..+.++.+| ...+.|.+|+||||+.+++++++|||||++++.++||+ +|+|||+|+
T Consensus 81 gG~~~~~~~~~-------~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~ 153 (190)
T PRK10903 81 GGGFTEQMQQK-------KPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVV 153 (190)
T ss_pred eCCcCCCCCCC-------CCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEe
Confidence 99987643211 134567777 45677799999999977799999999999999999984 899999999
Q ss_pred cChHHHHHHhcCCCCCCCC-CCCCccceEEEeeeee
Q 027457 155 KGDETLRKLEGLPTRKEGI-FVMPTERITIHSSYYY 189 (223)
Q Consensus 155 ~G~~vl~~I~~~~~~~~~~-~~~P~~~i~I~~~~vl 189 (223)
+|||||++|++++++..+. .++|..+|+|.+|+|+
T Consensus 154 eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~v~ 189 (190)
T PRK10903 154 KGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVL 189 (190)
T ss_pred cCHHHHHHHHcCCCCCCCCCCCcccCCeEEEEEEEe
Confidence 9999999999999976321 1399999999999886
No 2
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-47 Score=331.57 Aligned_cols=157 Identities=31% Similarity=0.441 Sum_probs=141.2
Q ss_pred CCcEEEEEEe-----ceeEEEEEcCCCChhhHHHHHHhhcCC-----------ccCCceEEEEecCCEEEeecCCCCCCC
Q 027457 27 GSARVVFQTN-----YGDIEFGFYPSVAPQTVDHIFKLVRLG-----------CYNTNHFFRVDKGFVAQVADVVGGRSA 90 (223)
Q Consensus 27 ~~~~v~~~t~-----~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~g~~f~ri~~~~~iq~Gd~~~~~~~ 90 (223)
.+|+|+|+++ .|||+||||.|.||+||+||+.||++. .|+|+.||||+++|||||||++.|+|.
T Consensus 7 ~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGt 86 (372)
T KOG0546|consen 7 TNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGT 86 (372)
T ss_pred CCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCC
Confidence 5799999998 899999999999999999999999742 599999999999999999999998886
Q ss_pred CCcchhhcccCccccCCcCCCCC-CccEEEEecCCCCCCCcceEEEEeCCCCCCCCCCcEEEEEEcChHHHHHHhcCCCC
Q 027457 91 PMNEVQRVEAEKTVVGEFSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTR 169 (223)
Q Consensus 91 ~~~~~~~~~~g~~~~~e~~~l~h-~~G~lsma~~~~~~~~~sqFfItl~~~~~ldg~~~vFG~Vv~G~~vl~~I~~~~~~ 169 (223)
.... .+|..+.||++.++| ++++||||| .|||+||||||||+.++|||||+|+|||+||+|++||+.|+.+.++
T Consensus 87 GGeS----IYG~~FdDEnF~lKHdrpflLSMAN-~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d 161 (372)
T KOG0546|consen 87 GGES----IYGEKFDDENFELKHDRPFLLSMAN-RGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETD 161 (372)
T ss_pred Cccc----ccccccccccceeccCcchhhhhhc-CCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccc
Confidence 2111 123444556778999 999999999 6799999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccceEEEeeeeecC
Q 027457 170 KEGIFVMPTERITIHSSYYYDT 191 (223)
Q Consensus 170 ~~~~~~~P~~~i~I~~~~vl~~ 191 (223)
..+ +|..+|+|.+||++..
T Consensus 162 ~~s---kP~~dV~I~dCGel~~ 180 (372)
T KOG0546|consen 162 EES---KPLADVVISDCGELVK 180 (372)
T ss_pred cCC---CCccceEecccccccc
Confidence 998 9999999999999865
No 3
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-47 Score=301.53 Aligned_cols=159 Identities=29% Similarity=0.414 Sum_probs=143.2
Q ss_pred CCCcEEEEEEe-----ceeEEEEEcCCCChhhHHHHHHhhcC----CccCCceEEEEecCCEEEeecCCCCCCCCCcchh
Q 027457 26 LGSARVVFQTN-----YGDIEFGFYPSVAPQTVDHIFKLVRL----GCYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQ 96 (223)
Q Consensus 26 ~~~~~v~~~t~-----~G~i~ieL~~~~aP~t~~nF~~L~~~----g~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~ 96 (223)
+-+.+|+|+.. .|+|+|+||++.+|+||+||..||.+ ..|.++.||||+|+|+|||||.+.|+|...
T Consensus 37 ~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg---- 112 (217)
T KOG0880|consen 37 KVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGG---- 112 (217)
T ss_pred cceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCCC----
Confidence 34678999875 88999999999999999999999983 369999999999999999999999877521
Q ss_pred hcccCccccCCcCCCCC-CccEEEEecCCCCCCCcceEEEEeCCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCC
Q 027457 97 RVEAEKTVVGEFSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFV 175 (223)
Q Consensus 97 ~~~~g~~~~~e~~~l~h-~~G~lsma~~~~~~~~~sqFfItl~~~~~ldg~~~vFG~Vv~G~~vl~~I~~~~~~~~~~~~ 175 (223)
..-.|..+++|+..|+| ++|.||||+ .+||+||||||||+...+||||+|+|||+|++||++|.+|+...++..+
T Consensus 113 ~SIyG~~F~DENf~LkH~rpG~lSMAn-~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~d--- 188 (217)
T KOG0880|consen 113 KSIYGEKFPDENFKLKHDRPGRLSMAN-AGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERD--- 188 (217)
T ss_pred eEeecCCCCCccceeecCCCceEeeec-cCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCC---
Confidence 11246677888889999 999999999 8999999999999999999999999999999999999999999999998
Q ss_pred CCccceEEEeeeeecCC
Q 027457 176 MPTERITIHSSYYYDTE 192 (223)
Q Consensus 176 ~P~~~i~I~~~~vl~~~ 192 (223)
+|+++++|.+|+.++..
T Consensus 189 kP~e~v~I~~~g~l~~~ 205 (217)
T KOG0880|consen 189 KPLEDVVIANCGELPVE 205 (217)
T ss_pred CccccEEEeecCccccc
Confidence 99999999999998653
No 4
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-48 Score=286.79 Aligned_cols=156 Identities=33% Similarity=0.524 Sum_probs=141.9
Q ss_pred CCCCCcEEEEEEeceeEEEEEcCCCChhhHHHHHHhhcCCccCCceEEEEecCCEEEeecCCC-CCCCCCcchhhcccCc
Q 027457 24 PQLGSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRSAPMNEVQRVEAEK 102 (223)
Q Consensus 24 ~~~~~~~v~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~ri~~~~~iq~Gd~~~-~~~~~~~~~~~~~~g~ 102 (223)
+.-..+.|.++|++|.|++|||-+.||+||+||..|++.|||+|..||||+++|+||||||++ |+|.. ...|.
T Consensus 5 ~~~q~~~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTGTGRGGa------SIYG~ 78 (164)
T KOG0881|consen 5 PEWQPPNVTLETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTGTGRGGA------SIYGD 78 (164)
T ss_pred ccCCCCeEEEeecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCCCCCCcc------ccccc
Confidence 344567999999999999999999999999999999999999999999999999999999998 44421 11466
Q ss_pred cccCC-cCCCCC-CccEEEEecCCCCCCCcceEEEEeCCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCCCCccc
Q 027457 103 TVVGE-FSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTER 180 (223)
Q Consensus 103 ~~~~e-~~~l~h-~~G~lsma~~~~~~~~~sqFfItl~~~~~ldg~~~vFG~Vv~G~~vl~~I~~~~~~~~~~~~~P~~~ 180 (223)
.+.+| +.+|+| .+|+||||| .+||+|||||||||.+.+||||+|++||||..||+|+.+|..+.+++.+ +|..+
T Consensus 79 kF~DEi~~dLkhTGAGILsMAN-aGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~D---RPi~~ 154 (164)
T KOG0881|consen 79 KFEDEIHSDLKHTGAGILSMAN-AGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSD---RPIDE 154 (164)
T ss_pred hhhhhhhhhhcccchhhhhhhc-cCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCC---CCccc
Confidence 67777 789999 999999999 8999999999999999999999999999999999999999999999998 99999
Q ss_pred eEEEeeeee
Q 027457 181 ITIHSSYYY 189 (223)
Q Consensus 181 i~I~~~~vl 189 (223)
++|.++.+.
T Consensus 155 ~kIika~~~ 163 (164)
T KOG0881|consen 155 VKIIKAYPS 163 (164)
T ss_pred eeeEeeecC
Confidence 999988654
No 5
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=3.1e-46 Score=297.91 Aligned_cols=155 Identities=34% Similarity=0.521 Sum_probs=139.0
Q ss_pred EEEEEEeceeEEEEEcCCCChhhHHHHHHhhcCCccCCceEEEEecCCEEEeecCCC-CCCCCCcchhhcccCccccCC-
Q 027457 30 RVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRSAPMNEVQRVEAEKTVVGE- 107 (223)
Q Consensus 30 ~v~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~ri~~~~~iq~Gd~~~-~~~~~~~~~~~~~~g~~~~~e- 107 (223)
+|.|+|+.|+|+||||++.||++|+||++||+.|+|+++.||||+|++++||||+.+ +.+.. ...+..+.+|
T Consensus 1 ~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~g~~~~------~~~g~~~~~E~ 74 (159)
T cd01923 1 YVRLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRGGE------SIWGKPFKDEF 74 (159)
T ss_pred CEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCCCCCCc------cccCCccCccc
Confidence 478999999999999999999999999999999999999999999999999999875 22211 0135566777
Q ss_pred cCCCCC-CccEEEEecCCCCCCCcceEEEEeCCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCCCCccceEEEee
Q 027457 108 FSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERITIHSS 186 (223)
Q Consensus 108 ~~~l~h-~~G~lsma~~~~~~~~~sqFfItl~~~~~ldg~~~vFG~Vv~G~~vl~~I~~~~~~~~~~~~~P~~~i~I~~~ 186 (223)
...++| ++|+|+|++ .++++++|||||++++.++||++|+|||+|++||++|++|++++++.++ +|..+|+|.+|
T Consensus 75 ~~~~~h~~~G~v~ma~-~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~---~P~~~i~I~~~ 150 (159)
T cd01923 75 KPNLSHDGRGVLSMAN-SGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTD---RPKEEIKIEDT 150 (159)
T ss_pred ccCcCcCCCcEEEEee-CCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCC---CCCCCeEEEEe
Confidence 457888 899999999 6799999999999999999999999999999999999999999988777 99999999999
Q ss_pred eeecCCcc
Q 027457 187 YYYDTEME 194 (223)
Q Consensus 187 ~vl~~~~~ 194 (223)
.|+.+|++
T Consensus 151 ~i~~dpf~ 158 (159)
T cd01923 151 SVFVDPFE 158 (159)
T ss_pred EEEeCCCC
Confidence 99999885
No 6
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-46 Score=295.02 Aligned_cols=153 Identities=37% Similarity=0.581 Sum_probs=132.4
Q ss_pred EEEEEEeceeEEEEEcCCCChhhHHHHHHhhcCCccCCceEEEEecCCEEEeecCCCCCCCCCcchhhcccCccccCCcC
Q 027457 30 RVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVGEFS 109 (223)
Q Consensus 30 ~v~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~g~~~~~e~~ 109 (223)
.|.++|+.|+|+|+||++.||+||+||++||+.|||+|+.||||+++||+||||+.++.+... .++.+++|+.
T Consensus 1 ~v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg-------~~~~f~~E~~ 73 (158)
T COG0652 1 TVILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGG-------PGPPFKDENF 73 (158)
T ss_pred CceeeccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCCCCCCC-------CCCCCccccc
Confidence 368999999999999999999999999999999999999999999999999999998644311 3577888854
Q ss_pred CCC---CCccEEEEecCCCCCCCcceEEEEeCCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCC-CCCCccceEEEe
Q 027457 110 DVK---HVRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGI-FVMPTERITIHS 185 (223)
Q Consensus 110 ~l~---h~~G~lsma~~~~~~~~~sqFfItl~~~~~ldg~~~vFG~Vv~G~~vl~~I~~~~~~~~~~-~~~P~~~i~I~~ 185 (223)
... |.+|+|||||.+.||+++|||||++.+++|||++|+|||+|++|||+|++|++..+...+. ...|..+++|.+
T Consensus 74 ~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~ 153 (158)
T COG0652 74 ALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILS 153 (158)
T ss_pred ccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEee
Confidence 433 4599999999666999999999999999999999999999999999999999988876542 236778888888
Q ss_pred eeee
Q 027457 186 SYYY 189 (223)
Q Consensus 186 ~~vl 189 (223)
+.++
T Consensus 154 ~~~~ 157 (158)
T COG0652 154 VKIV 157 (158)
T ss_pred eeee
Confidence 7664
No 7
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=4.6e-46 Score=298.87 Aligned_cols=161 Identities=27% Similarity=0.428 Sum_probs=137.5
Q ss_pred EEEEeceeEEEEEcCCCChhhHHHHHHhhcCCccCCceEEEEecCCEEEeecCCCC-CCC-CCcchhhcccCccccCC-c
Q 027457 32 VFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGG-RSA-PMNEVQRVEAEKTVVGE-F 108 (223)
Q Consensus 32 ~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~ri~~~~~iq~Gd~~~~-~~~-~~~~~~~~~~g~~~~~e-~ 108 (223)
.|+|+.|+|+||||.+.||++|+||++||+.++|+++.||||++++++||||+.+. .+. +.........+..+.+| .
T Consensus 1 ll~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~~~~~~~~~~~~~~~~~e~~ 80 (166)
T cd01921 1 LLETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGESIYSQLYGRQARFFEPEIL 80 (166)
T ss_pred CcEeccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCCcccccccccccCcccCcccC
Confidence 37899999999999999999999999999999999999999999999999999752 221 11110011123345566 4
Q ss_pred CCCCC-CccEEEEecCCCCCCCcceEEEEeCC-CCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCCCCccceEEEee
Q 027457 109 SDVKH-VRGILSMGRYSDPNSAASSFSILLGD-APHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERITIHSS 186 (223)
Q Consensus 109 ~~l~h-~~G~lsma~~~~~~~~~sqFfItl~~-~~~ldg~~~vFG~Vv~G~~vl~~I~~~~~~~~~~~~~P~~~i~I~~~ 186 (223)
+.++| .+|+||||+ .++++++|||||++++ .++||++|+|||+|++||++|++|++++++.++ +|.++|+|.+|
T Consensus 81 ~~~~h~~~G~l~ma~-~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~---~P~~~i~I~~~ 156 (166)
T cd01921 81 PLLKHSKKGTVSMVN-AGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDG---RPLKDIRIKHT 156 (166)
T ss_pred CccccCCceEEEEeE-CCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCC---CCCCCeEEEEE
Confidence 67889 999999999 6788999999999975 799999999999999999999999999998887 99999999999
Q ss_pred eeecCCcchh
Q 027457 187 YYYDTEMEIC 196 (223)
Q Consensus 187 ~vl~~~~~~~ 196 (223)
+|+.+||+++
T Consensus 157 ~i~~~pf~~~ 166 (166)
T cd01921 157 HILDDPFPDP 166 (166)
T ss_pred EEECCCCCCC
Confidence 9999999764
No 8
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=8.6e-45 Score=287.79 Aligned_cols=149 Identities=39% Similarity=0.619 Sum_probs=132.7
Q ss_pred EEEEEEeceeEEEEEcCCCChhhHHHHHHhhcCCccCCceEEEEecCCEEEeecCCC-CCCCCCcchhhcccCccccCCc
Q 027457 30 RVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRSAPMNEVQRVEAEKTVVGEF 108 (223)
Q Consensus 30 ~v~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~ri~~~~~iq~Gd~~~-~~~~~~~~~~~~~~g~~~~~e~ 108 (223)
.|.|+|+.|+|+||||++.||++|+||++||+++||+++.|||++|+|++||||+.+ +.+.. ...+..+.+|.
T Consensus 2 ~v~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~g~g~~------~~~~~~~~~e~ 75 (153)
T cd01928 2 SVTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKGGE------SIWGKKFEDEF 75 (153)
T ss_pred EEEEEEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCCCCCCC------ccCCCcccccc
Confidence 489999999999999999999999999999999999999999999999999999875 22211 01355677774
Q ss_pred -CCCCC-CccEEEEecCCCCCCCcceEEEEeCCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCCCCccceEEEee
Q 027457 109 -SDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERITIHSS 186 (223)
Q Consensus 109 -~~l~h-~~G~lsma~~~~~~~~~sqFfItl~~~~~ldg~~~vFG~Vv~G~~vl~~I~~~~~~~~~~~~~P~~~i~I~~~ 186 (223)
+.++| .+|+|+|++ .++++++|||||+++++++||++|+|||+|++|||+|++|++++++..+ +|..+|+|.+|
T Consensus 76 ~~~~~~~~~G~v~ma~-~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~---~P~~~i~I~~~ 151 (153)
T cd01928 76 RETLKHDSRGVVSMAN-NGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKY---RPLEEIRIKDV 151 (153)
T ss_pred ccCCCcCCCcEEEEee-CCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCC---CCcCCeEEEEe
Confidence 56888 899999999 6799999999999999999999999999999999999999999998777 99999999998
Q ss_pred ee
Q 027457 187 YY 188 (223)
Q Consensus 187 ~v 188 (223)
.+
T Consensus 152 ~~ 153 (153)
T cd01928 152 TI 153 (153)
T ss_pred EC
Confidence 53
No 9
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-45 Score=317.90 Aligned_cols=169 Identities=31% Similarity=0.472 Sum_probs=152.2
Q ss_pred CCcEEEEEEeceeEEEEEcCCCChhhHHHHHHhhcCCccCCceEEEEecCCEEEeecCCC-CCCCCCcchhhcccCcccc
Q 027457 27 GSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRSAPMNEVQRVEAEKTVV 105 (223)
Q Consensus 27 ~~~~v~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~ri~~~~~iq~Gd~~~-~~~~~~~~~~~~~~g~~~~ 105 (223)
...+|.|.|+.|.|.+||++|.+|++|+||+.||+.|||+|+.|||.+.+||||||||++ |.|.. ...|.++.
T Consensus 276 kkgyvrl~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRsIrnFmiQGGDPTGTG~GGe------SiWgKpFk 349 (518)
T KOG0883|consen 276 KKGYVRLVTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRSIRNFMIQGGDPTGTGRGGE------SIWGKPFK 349 (518)
T ss_pred ccceEEEeccCCceeeEeecCcchHHHHHHHHHHhcccccchHHHHHHHHHeeeCCCCCCCCCCCc------cccCCccc
Confidence 467999999999999999999999999999999999999999999999999999999998 44421 11467778
Q ss_pred CC-cCCCCC-CccEEEEecCCCCCCCcceEEEEeCCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCCCCccceEE
Q 027457 106 GE-FSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERITI 183 (223)
Q Consensus 106 ~e-~~~l~h-~~G~lsma~~~~~~~~~sqFfItl~~~~~ldg~~~vFG~Vv~G~~vl~~I~~~~~~~~~~~~~P~~~i~I 183 (223)
+| .+.|.| .||+||||| +|||+|||||||++.++.+||++|+|||+||.|+++|.+|+++++++.+ +|..+|+|
T Consensus 350 DEf~~~l~H~gRGvlSMAN-sGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~D---rP~e~I~i 425 (518)
T KOG0883|consen 350 DEFCSNLSHDGRGVLSMAN-SGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKD---RPKEEIKI 425 (518)
T ss_pred cccCCCCCcCCcceEeecc-CCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCC---CcccceEE
Confidence 88 678999 999999999 8999999999999999999999999999999999999999999999998 99999999
Q ss_pred EeeeeecCCcchhHHHHHHHHH
Q 027457 184 HSSYYYDTEMEICEKERSVLKR 205 (223)
Q Consensus 184 ~~~~vl~~~~~~~~~~~~~~~~ 205 (223)
.++.|..+|+++.+++.+.-++
T Consensus 426 ~~~~VFVdPfeEa~~e~~kEr~ 447 (518)
T KOG0883|consen 426 EDAIVFVDPFEEADKEREKERA 447 (518)
T ss_pred eeeEEeeCcHHHHHHHHHHHHH
Confidence 9999999988765554443333
No 10
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=2.7e-44 Score=283.53 Aligned_cols=145 Identities=35% Similarity=0.529 Sum_probs=128.7
Q ss_pred EEEEeceeEEEEEcCCCChhhHHHHHHhhcCCccCCceEEEEecCCEEEeecCCC-CCCCCCcchhhcccCccccCC-cC
Q 027457 32 VFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRSAPMNEVQRVEAEKTVVGE-FS 109 (223)
Q Consensus 32 ~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~ri~~~~~iq~Gd~~~-~~~~~~~~~~~~~~g~~~~~e-~~ 109 (223)
+|+|++|+|+||||.+.||++|+||++||+.+||+++.||||+|+|++||||+.+ +.+.. ...+..+++| .+
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~g~~------~~~~~~~~~e~~~ 74 (148)
T cd01927 1 IIHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGGE------SIWGKEFEDEFSP 74 (148)
T ss_pred CeEeccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCCCCCCC------cccCCcccccccc
Confidence 3799999999999999999999999999999999999999999999999999875 22211 0124567777 45
Q ss_pred CCCC-CccEEEEecCCCCCCCcceEEEEeCCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCCCCccceEEEee
Q 027457 110 DVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERITIHSS 186 (223)
Q Consensus 110 ~l~h-~~G~lsma~~~~~~~~~sqFfItl~~~~~ldg~~~vFG~Vv~G~~vl~~I~~~~~~~~~~~~~P~~~i~I~~~ 186 (223)
.++| ++|+|||++ .++++++|||||+++++++||++|+|||+|++||++|++|++++++.++ +|.++|+|.++
T Consensus 75 ~~~h~~~G~l~ma~-~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~---~P~~~i~I~~~ 148 (148)
T cd01927 75 SLKHDRPYTLSMAN-AGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKND---RPYEDIKIINI 148 (148)
T ss_pred ccCcCCCeEEEEee-CCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCC---CCcCCeEEEeC
Confidence 7889 789999999 6799999999999999999999999999999999999999999998777 99999999863
No 11
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=2.3e-43 Score=282.41 Aligned_cols=153 Identities=33% Similarity=0.522 Sum_probs=131.6
Q ss_pred EEEEEEeceeEEEEEcCCCChhhHHHHHHhhcCCccCCceEEEEecCCEEEeecCCCCCCCCCcchhhcccCccccCC-c
Q 027457 30 RVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVGE-F 108 (223)
Q Consensus 30 ~v~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~g~~~~~e-~ 108 (223)
.|.|+|+.|+|+|+||.+.||+||+||++||+.+||+++.||||+|+|++||||+..+.+.. ..+.++++| .
T Consensus 1 ~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~~~~~~~-------~~~~~~~~e~~ 73 (164)
T PRK10791 1 MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQK-------ATKEPIKNEAN 73 (164)
T ss_pred CEEEEEccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcCCCCCcC-------CCCCCcCCccc
Confidence 37899999999999999999999999999999999999999999999999999876543211 124567777 4
Q ss_pred CCCCCCccEEEEecCCCCCCCcceEEEEeCCCCCCC-------C-CCcEEEEEEcChHHHHHHhcCCCCCCCC-CCCCcc
Q 027457 109 SDVKHVRGILSMGRYSDPNSAASSFSILLGDAPHLD-------G-QYAVFGKVTKGDETLRKLEGLPTRKEGI-FVMPTE 179 (223)
Q Consensus 109 ~~l~h~~G~lsma~~~~~~~~~sqFfItl~~~~~ld-------g-~~~vFG~Vv~G~~vl~~I~~~~~~~~~~-~~~P~~ 179 (223)
..++|.+|+||||+.++|++++|||||++.++++|| + +|+|||+|++||++|++|++++++..+. .++|..
T Consensus 74 ~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~ 153 (164)
T PRK10791 74 NGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKE 153 (164)
T ss_pred ccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCC
Confidence 567789999999996679999999999999988876 3 7999999999999999999999976421 138999
Q ss_pred ceEEEeeeee
Q 027457 180 RITIHSSYYY 189 (223)
Q Consensus 180 ~i~I~~~~vl 189 (223)
+|+|.+|.|.
T Consensus 154 ~v~I~~~~i~ 163 (164)
T PRK10791 154 DVIIESVTVS 163 (164)
T ss_pred CeEEEEEEEe
Confidence 9999999775
No 12
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=2.9e-43 Score=296.45 Aligned_cols=159 Identities=26% Similarity=0.364 Sum_probs=140.2
Q ss_pred CCcEEEEEEe-----ceeEEEEEcCCCChhhHHHHHHhhcCC-----------ccCCceEEEEecC-CEEEeecCCCCCC
Q 027457 27 GSARVVFQTN-----YGDIEFGFYPSVAPQTVDHIFKLVRLG-----------CYNTNHFFRVDKG-FVAQVADVVGGRS 89 (223)
Q Consensus 27 ~~~~v~~~t~-----~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~g~~f~ri~~~-~~iq~Gd~~~~~~ 89 (223)
.+++|+|+|+ .|+|+||||.+.||+||+||+.||++. +|+++.||||+++ ++||+||+.++..
T Consensus 51 ~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~~g~ 130 (249)
T PTZ00221 51 NSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDSFNV 130 (249)
T ss_pred CCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCCCCc
Confidence 5789999988 677999999999999999999999742 3999999999986 8999999875221
Q ss_pred CCCcchhhcccCccccCCcCCCCC-CccEEEEecCCCCCCCcceEEEEeCCCCCCCCCCcEEEEEEcChHHHHHHhcCCC
Q 027457 90 APMNEVQRVEAEKTVVGEFSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPT 168 (223)
Q Consensus 90 ~~~~~~~~~~~g~~~~~e~~~l~h-~~G~lsma~~~~~~~~~sqFfItl~~~~~ldg~~~vFG~Vv~G~~vl~~I~~~~~ 168 (223)
. ..|..+.+|...++| ++|+|||++ .+|+++|||||||+.++++||++|+|||+|++||+||++|+++++
T Consensus 131 s--------~~G~~f~dE~~~~~h~~~G~LsMan-~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~ 201 (249)
T PTZ00221 131 S--------STGTPIADEGYRHRHTERGLLTMIS-EGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPL 201 (249)
T ss_pred c--------CCCCcccCccccccCCCCCEEEeCc-CCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCc
Confidence 1 136778888777888 999999999 679999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccceEEEeeeeecCCcchhH
Q 027457 169 RKEGIFVMPTERITIHSSYYYDTEMEICE 197 (223)
Q Consensus 169 ~~~~~~~~P~~~i~I~~~~vl~~~~~~~~ 197 (223)
+..+ +|.++|+|.+|+++.++-+...
T Consensus 202 d~~g---rP~~~V~I~~Cgvl~~~~p~~~ 227 (249)
T PTZ00221 202 DDVG---RPLLPVTVSFCGALTGEKPPGR 227 (249)
T ss_pred CCCC---CCCCCeEEEECeEecCCCCCcc
Confidence 8777 9999999999999988665544
No 13
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=1.7e-43 Score=278.38 Aligned_cols=143 Identities=33% Similarity=0.574 Sum_probs=126.8
Q ss_pred EEEEeceeEEEEEcCCCChhhHHHHHHhhcCCccCCceEEEEecCCEEEeecCCC-CCCCCCcchhhcccCccccCC-cC
Q 027457 32 VFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRSAPMNEVQRVEAEKTVVGE-FS 109 (223)
Q Consensus 32 ~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~ri~~~~~iq~Gd~~~-~~~~~~~~~~~~~~g~~~~~e-~~ 109 (223)
.|+|+.|+|+||||.+.||++|+||++||+.+||+++.||||+|+|++||||+.+ +.+.. ...+..+.+| .+
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~~~~------~~~~~~~~~e~~~ 74 (146)
T cd01922 1 TLETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGGA------SIYGKKFEDEIHP 74 (146)
T ss_pred CeEeccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCCCCCcc------cccCCCccccccc
Confidence 3789999999999999999999999999999999999999999999999999875 22211 0124566777 56
Q ss_pred CCCC-CccEEEEecCCCCCCCcceEEEEeCCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCCCCccceEEEe
Q 027457 110 DVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERITIHS 185 (223)
Q Consensus 110 ~l~h-~~G~lsma~~~~~~~~~sqFfItl~~~~~ldg~~~vFG~Vv~G~~vl~~I~~~~~~~~~~~~~P~~~i~I~~ 185 (223)
.++| ++|+|||++ .++++++|||||+++++|+||++|+|||+|++|||||++|++++++ .+ +|..+|+|.+
T Consensus 75 ~~~h~~~G~l~ma~-~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~---~P~~~I~I~~ 146 (146)
T cd01922 75 ELKHTGAGILSMAN-AGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TD---RPIDEVKILK 146 (146)
T ss_pred CcCCCCCeEEEEee-CCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CC---CcCCCeEEeC
Confidence 7889 799999999 6799999999999999999999999999999999999999999998 55 9999999963
No 14
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=4.6e-43 Score=282.69 Aligned_cols=159 Identities=27% Similarity=0.414 Sum_probs=139.8
Q ss_pred CcEEEEEEeceeEEEEEcCCCChhhHHHHHHhhcCCccCCceEEEEecCCEEEeecCCC-CCCCCCcchhhcccCccccC
Q 027457 28 SARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRSAPMNEVQRVEAEKTVVG 106 (223)
Q Consensus 28 ~~~v~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~ri~~~~~iq~Gd~~~-~~~~~~~~~~~~~~g~~~~~ 106 (223)
+.+|.|+|++|+|+||||.+.+|++|+||++||+.++|+++.||||+|+|++||||+.+ +.+.. ...|..+.+
T Consensus 5 ~~~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~~g~g~~------s~~g~~~~~ 78 (171)
T cd01925 5 TGKVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTGGE------SIYGEPFKD 78 (171)
T ss_pred ccEEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCCCCccCc------ccCCCccCc
Confidence 56899999999999999999999999999999999999999999999999999999875 22211 012455666
Q ss_pred C-cCCCCC-CccEEEEecCCCCCCCcceEEEEeCCCCCCCCCCcEEEEEE-cChHHHHHHhcCCCCCCCCCCCCccceEE
Q 027457 107 E-FSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVT-KGDETLRKLEGLPTRKEGIFVMPTERITI 183 (223)
Q Consensus 107 e-~~~l~h-~~G~lsma~~~~~~~~~sqFfItl~~~~~ldg~~~vFG~Vv-~G~~vl~~I~~~~~~~~~~~~~P~~~i~I 183 (223)
| ...++| ++|+|+|++ .++++++|||||++++.++||++|+|||+|+ ++|+++++|++++++.++ +|.++|+|
T Consensus 79 E~~~~~~~~~~G~l~ma~-~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~---~P~~~i~I 154 (171)
T cd01925 79 EFHSRLRFNRRGLVGMAN-AGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDE---RPVYPPKI 154 (171)
T ss_pred ccccCcCCCCCcEEEECc-CCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCC---CcCCCeEE
Confidence 7 456777 999999999 6688999999999999999999999999999 468889999999998877 89999999
Q ss_pred EeeeeecCCcchh
Q 027457 184 HSSYYYDTEMEIC 196 (223)
Q Consensus 184 ~~~~vl~~~~~~~ 196 (223)
.+|+++.+|+++.
T Consensus 155 ~~~~i~~~pf~~~ 167 (171)
T cd01925 155 TSVEVLENPFDDI 167 (171)
T ss_pred EEEEEEcCCchhh
Confidence 9999999888653
No 15
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-43 Score=267.25 Aligned_cols=154 Identities=27% Similarity=0.408 Sum_probs=141.3
Q ss_pred CCcEEEEEEe-----ceeEEEEEcCCCChhhHHHHHHhhcCC--------ccCCceEEEEecCCEEEeecCCCCCCCCCc
Q 027457 27 GSARVVFQTN-----YGDIEFGFYPSVAPQTVDHIFKLVRLG--------CYNTNHFFRVDKGFVAQVADVVGGRSAPMN 93 (223)
Q Consensus 27 ~~~~v~~~t~-----~G~i~ieL~~~~aP~t~~nF~~L~~~g--------~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~ 93 (223)
.+|.|+|+.+ .|+|.||||+|.+|+|++||+++|++. .|+++.||||+++|+|||||..+|+|....
T Consensus 9 ~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~ 88 (177)
T KOG0879|consen 9 NNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVA 88 (177)
T ss_pred CCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCceEE
Confidence 4789999975 899999999999999999999999865 499999999999999999999998775322
Q ss_pred chhhcccCccccCCcCCCCC-CccEEEEecCCCCCCCcceEEEEeCCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCC
Q 027457 94 EVQRVEAEKTVVGEFSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEG 172 (223)
Q Consensus 94 ~~~~~~~g~~~~~e~~~l~h-~~G~lsma~~~~~~~~~sqFfItl~~~~~ldg~~~vFG~Vv~G~~vl~~I~~~~~~~~~ 172 (223)
...|..+.+|+..++| .+|+||||+ +++++||+|||||...+.|||++|+|||+|++|+.++++|+..++..++
T Consensus 89 ----sIy~~~F~DENFtlkH~~PGlLSMAN-sG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~Nn 163 (177)
T KOG0879|consen 89 ----SIYGSTFPDENFTLKHDGPGLLSMAN-SGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNN 163 (177)
T ss_pred ----EEcCCCCCCcceeeecCCCceeeccc-cCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCC
Confidence 2246688899889999 999999999 8999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccceEEEeeee
Q 027457 173 IFVMPTERITIHSSYY 188 (223)
Q Consensus 173 ~~~~P~~~i~I~~~~v 188 (223)
+|+.+|.|+.|+.
T Consensus 164 ---kPKl~v~i~qCGe 176 (177)
T KOG0879|consen 164 ---KPKLPVVIVQCGE 176 (177)
T ss_pred ---CCCCcEEEeeccc
Confidence 9999999999985
No 16
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=3e-42 Score=281.06 Aligned_cols=156 Identities=26% Similarity=0.347 Sum_probs=133.6
Q ss_pred CCCcEEEEEEe-----ceeEEEEEcCCCChhhHHHHHHhhcCCc--------cCCceEEEEecCCEEEeecCCCCCCCCC
Q 027457 26 LGSARVVFQTN-----YGDIEFGFYPSVAPQTVDHIFKLVRLGC--------YNTNHFFRVDKGFVAQVADVVGGRSAPM 92 (223)
Q Consensus 26 ~~~~~v~~~t~-----~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~ 92 (223)
+.++.|+|+++ .|+|+||||.+.+|++|+||++||++.+ |+++.||||+++++|||||+..+.+...
T Consensus 16 ~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~ 95 (186)
T PLN03149 16 PKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGC 95 (186)
T ss_pred CCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCc
Confidence 44678999865 6999999999999999999999997544 9999999999999999999865433211
Q ss_pred cchhhcccCccccCCcCCCCC-CccEEEEecCCCCCCCcceEEEEeCCCCCCCCCCcEEEEEE-cChHHHHHHhcCCCCC
Q 027457 93 NEVQRVEAEKTVVGEFSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVT-KGDETLRKLEGLPTRK 170 (223)
Q Consensus 93 ~~~~~~~~g~~~~~e~~~l~h-~~G~lsma~~~~~~~~~sqFfItl~~~~~ldg~~~vFG~Vv-~G~~vl~~I~~~~~~~ 170 (223)
. ...+..+++|...++| .+|+|||++ .++++++|||||++++.++||++|+|||+|+ +||+||++|++++++.
T Consensus 96 ~----~~~g~~f~~e~~~~~h~~~G~lsma~-~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~ 170 (186)
T PLN03149 96 V----SIYGSKFEDENFIAKHTGPGLLSMAN-SGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGP 170 (186)
T ss_pred c----cccCCccCCcccccccCCCCEEEEee-CCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCC
Confidence 0 0124455666556778 899999999 6799999999999999999999999999999 8999999999999987
Q ss_pred CCCCCCCccceEEEeeeee
Q 027457 171 EGIFVMPTERITIHSSYYY 189 (223)
Q Consensus 171 ~~~~~~P~~~i~I~~~~vl 189 (223)
.+ +|.++|+|.+|+++
T Consensus 171 ~~---~P~~~i~I~~cG~~ 186 (186)
T PLN03149 171 NN---RPKLACVISECGEM 186 (186)
T ss_pred CC---CCcCCeEEEeCEeC
Confidence 77 99999999999974
No 17
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=9.8e-42 Score=277.59 Aligned_cols=155 Identities=28% Similarity=0.418 Sum_probs=133.3
Q ss_pred CCcEEEEEEe-----ceeEEEEEcCCCChhhHHHHHHhhc---------CCccCCceEEEEecCCEEEeecCCCCCCCCC
Q 027457 27 GSARVVFQTN-----YGDIEFGFYPSVAPQTVDHIFKLVR---------LGCYNTNHFFRVDKGFVAQVADVVGGRSAPM 92 (223)
Q Consensus 27 ~~~~v~~~t~-----~G~i~ieL~~~~aP~t~~nF~~L~~---------~g~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~ 92 (223)
.+++|+|+.+ .|+|+||||.+.||++|+||++||+ .++|+++.||||+|+++|||||+..+.+...
T Consensus 14 ~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g 93 (183)
T PTZ00060 14 KRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGG 93 (183)
T ss_pred CCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCCCCCCC
Confidence 4678998865 5999999999999999999999996 4699999999999999999999875433211
Q ss_pred cchhhcccCccccCCcCCCCC-CccEEEEecCCCCCCCcceEEEEeCCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCC
Q 027457 93 NEVQRVEAEKTVVGEFSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKE 171 (223)
Q Consensus 93 ~~~~~~~~g~~~~~e~~~l~h-~~G~lsma~~~~~~~~~sqFfItl~~~~~ldg~~~vFG~Vv~G~~vl~~I~~~~~~~~ 171 (223)
. ...|..+.+|...++| .+|+|+|++ .++++++|||||++++.++||++|+|||+|++|||||++|++.++..
T Consensus 94 ~----~~~g~~~~~e~~~~~h~~~G~lsma~-~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~- 167 (183)
T PTZ00060 94 E----SIYGRKFTDENFKLKHDQPGLLSMAN-AGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQS- 167 (183)
T ss_pred C----cccccccCCccccccCCCCCEEEecc-CCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCC-
Confidence 0 0124556677667888 789999999 57999999999999999999999999999999999999999988853
Q ss_pred CCCCCCccceEEEeeeeec
Q 027457 172 GIFVMPTERITIHSSYYYD 190 (223)
Q Consensus 172 ~~~~~P~~~i~I~~~~vl~ 190 (223)
+ +|.++|+|++|+++.
T Consensus 168 ~---~P~~~v~I~~cg~~~ 183 (183)
T PTZ00060 168 G---YPKKPVVVTDCGELQ 183 (183)
T ss_pred C---CCcCCeEEEEeEEcC
Confidence 4 899999999999973
No 18
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=5.6e-42 Score=272.30 Aligned_cols=147 Identities=36% Similarity=0.540 Sum_probs=126.5
Q ss_pred EEEeceeEEEEEcCCCChhhHHHHHHhhcCCccCCceEEEEecCCEEEeecCCCCCCCCCcchhhcccCccccCC-cCCC
Q 027457 33 FQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVGE-FSDV 111 (223)
Q Consensus 33 ~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~g~~~~~e-~~~l 111 (223)
|+|+.|+|+|+||.+.||++|+||++||+.|||+++.||||+|+|++||||+..+.+.. ..+..+.+| ...+
T Consensus 2 l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~~-------~~~~~~~~e~~~~~ 74 (155)
T cd01920 2 FQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQK-------ETLKPIKNEAGNGL 74 (155)
T ss_pred cEecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCCCCcc-------ccCCcccCcccccc
Confidence 78999999999999999999999999999999999999999999999999987643221 124456666 4456
Q ss_pred CCCccEEEEecCCCCCCCcceEEEEeCCCCCCCC-----CCcEEEEEEcChHHHHHHhcCCCCCCC-CCCCCccceEEEe
Q 027457 112 KHVRGILSMGRYSDPNSAASSFSILLGDAPHLDG-----QYAVFGKVTKGDETLRKLEGLPTRKEG-IFVMPTERITIHS 185 (223)
Q Consensus 112 ~h~~G~lsma~~~~~~~~~sqFfItl~~~~~ldg-----~~~vFG~Vv~G~~vl~~I~~~~~~~~~-~~~~P~~~i~I~~ 185 (223)
.|.+|+||||++++|++++|||||+++++++||+ +|+|||+|++||+||++|++++++... ...+|..+|+|.+
T Consensus 75 ~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~ 154 (155)
T cd01920 75 SNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIES 154 (155)
T ss_pred cCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEE
Confidence 6799999999977799999999999999999995 799999999999999999999997641 1138999999986
Q ss_pred e
Q 027457 186 S 186 (223)
Q Consensus 186 ~ 186 (223)
+
T Consensus 155 ~ 155 (155)
T cd01920 155 A 155 (155)
T ss_pred C
Confidence 4
No 19
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=1.6e-41 Score=272.01 Aligned_cols=150 Identities=29% Similarity=0.466 Sum_probs=129.1
Q ss_pred cEEEEEE-----eceeEEEEEcCCCChhhHHHHHHhhcC--C------ccCCceEEEEecCCEEEeecCCCCCCCCCcch
Q 027457 29 ARVVFQT-----NYGDIEFGFYPSVAPQTVDHIFKLVRL--G------CYNTNHFFRVDKGFVAQVADVVGGRSAPMNEV 95 (223)
Q Consensus 29 ~~v~~~t-----~~G~i~ieL~~~~aP~t~~nF~~L~~~--g------~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~ 95 (223)
|+|+|+. +.|+|+||||.+.||++|+||++||++ + +|+++.||||+|++++|+||+..+.+....
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~-- 78 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGK-- 78 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCC--
Confidence 3566664 599999999999999999999999973 4 899999999999999999998754332111
Q ss_pred hhcccCccccCCcCCCCC-CccEEEEecCCCCCCCcceEEEEeCCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCC
Q 027457 96 QRVEAEKTVVGEFSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIF 174 (223)
Q Consensus 96 ~~~~~g~~~~~e~~~l~h-~~G~lsma~~~~~~~~~sqFfItl~~~~~ldg~~~vFG~Vv~G~~vl~~I~~~~~~~~~~~ 174 (223)
...+..+++|...++| ++|+|||++ .++++++|||||++++.++||++|+|||+|++|||||++|++++++ .+
T Consensus 79 --~~~g~~~~~e~~~~~h~~~G~lsma~-~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~-- 152 (164)
T cd01926 79 --SIYGEKFPDENFKLKHTGPGLLSMAN-AGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NG-- 152 (164)
T ss_pred --cccCCccCCCCccccCCCccEEEeeE-CCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CC--
Confidence 0124456667667899 899999999 6799999999999999999999999999999999999999999998 66
Q ss_pred CCCccceEEEeee
Q 027457 175 VMPTERITIHSSY 187 (223)
Q Consensus 175 ~~P~~~i~I~~~~ 187 (223)
+|.++|+|.+||
T Consensus 153 -~P~~~i~I~~cG 164 (164)
T cd01926 153 -KPKKKVVIADCG 164 (164)
T ss_pred -CCcCCeEEEECC
Confidence 999999999996
No 20
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-41 Score=295.83 Aligned_cols=152 Identities=31% Similarity=0.492 Sum_probs=137.4
Q ss_pred CCcEEEEEEeceeEEEEEcCCCChhhHHHHHHhhcCCccCCceEEEEecCCEEEeecCCC-CCCCCCcchhhcccCcccc
Q 027457 27 GSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRSAPMNEVQRVEAEKTVV 105 (223)
Q Consensus 27 ~~~~v~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~ri~~~~~iq~Gd~~~-~~~~~~~~~~~~~~g~~~~ 105 (223)
-...+.++|++|+|.|.||+++||+||+||-..|++|||+|..||||+++||||+|||.+ |.|.. ...|..+.
T Consensus 403 l~~~aiihtt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiqtgdp~g~gtgge------siwg~dfe 476 (558)
T KOG0882|consen 403 LGKAAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQTGDPLGDGTGGE------SIWGKDFE 476 (558)
T ss_pred cccceEEEecccceEEEecccccchhhhhhhccccCccccCcchHHhhhhheeecCCCCCCCCCCc------ccccccch
Confidence 455788999999999999999999999999999999999999999999999999999997 33311 01355566
Q ss_pred CC-cCCCCC-CccEEEEecCCCCCCCcceEEEEeCCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCCCCccceEE
Q 027457 106 GE-FSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERITI 183 (223)
Q Consensus 106 ~e-~~~l~h-~~G~lsma~~~~~~~~~sqFfItl~~~~~ldg~~~vFG~Vv~G~~vl~~I~~~~~~~~~~~~~P~~~i~I 183 (223)
+| ++.|+| ++-+||||| .|||+||||||||+.+.|||||+|+|||||+.||+|+++|+++.++..+ +|.++|.|
T Consensus 477 defh~~lrhdrpft~sman-ag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~d---rp~e~v~i 552 (558)
T KOG0882|consen 477 DEFHPNLRHDRPFTVSMAN-AGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYD---RPYEDVKI 552 (558)
T ss_pred hhcCcccccCCCceEEecc-cCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCC---CCCCceeE
Confidence 77 688999 888999999 7799999999999999999999999999999999999999999998887 99999999
Q ss_pred Eeeee
Q 027457 184 HSSYY 188 (223)
Q Consensus 184 ~~~~v 188 (223)
.++.+
T Consensus 553 inisv 557 (558)
T KOG0882|consen 553 INISV 557 (558)
T ss_pred EEEec
Confidence 99865
No 21
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-40 Score=246.96 Aligned_cols=155 Identities=35% Similarity=0.528 Sum_probs=139.6
Q ss_pred EEEEEEeceeEEEEEcCCCChhhHHHHHHhhcCCccCCceEEEEecCCEEEeecCCC-CCCCCCcchhhcccCccccCC-
Q 027457 30 RVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRSAPMNEVQRVEAEKTVVGE- 107 (223)
Q Consensus 30 ~v~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~ri~~~~~iq~Gd~~~-~~~~~~~~~~~~~~g~~~~~e- 107 (223)
.|+++|+.|+|.||||.+.+|++|+||+.+|...||++|.|||-+|+|++|+||++. |.|... ..|..+.+|
T Consensus 2 svtlht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tgrgg~s------iwg~~fede~ 75 (161)
T KOG0884|consen 2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTGRGGNS------IWGKKFEDEY 75 (161)
T ss_pred eEEEeeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCCCCCcc------ccCCcchHHH
Confidence 589999999999999999999999999999999999999999999999999999986 433211 146667777
Q ss_pred cCCCCC-CccEEEEecCCCCCCCcceEEEEeCCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCCCCccceEEEee
Q 027457 108 FSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERITIHSS 186 (223)
Q Consensus 108 ~~~l~h-~~G~lsma~~~~~~~~~sqFfItl~~~~~ldg~~~vFG~Vv~G~~vl~~I~~~~~~~~~~~~~P~~~i~I~~~ 186 (223)
..-|+| .||+||||+ .+|++|+||||||.+..++||-+|++||+|++|+++|+.|+++++++... +|+.++.|.++
T Consensus 76 ~~~lkh~~rg~vsman-ngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~kty--rpl~~~~ik~i 152 (161)
T KOG0884|consen 76 SEYLKHNVRGVVSMAN-NGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTY--RPLNDVHIKDI 152 (161)
T ss_pred HHHHhhccceeEEccc-CCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCcccc--ccchheeeeee
Confidence 456999 999999999 89999999999999999999999999999999999999999999998742 99999999999
Q ss_pred eeecCCc
Q 027457 187 YYYDTEM 193 (223)
Q Consensus 187 ~vl~~~~ 193 (223)
.+-..|+
T Consensus 153 tihanp~ 159 (161)
T KOG0884|consen 153 TIHANPF 159 (161)
T ss_pred EEecCcC
Confidence 9887765
No 22
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=2.7e-39 Score=256.42 Aligned_cols=151 Identities=38% Similarity=0.609 Sum_probs=131.9
Q ss_pred EEEEEEe-ceeEEEEEcCCCChhhHHHHHHhhcCCccCCceEEEEecCCEEEeecCCCCCCCCCcchhhcccCccccCCc
Q 027457 30 RVVFQTN-YGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVGEF 108 (223)
Q Consensus 30 ~v~~~t~-~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~g~~~~~e~ 108 (223)
.|.|+|+ .|+|+||||.+.||++|+||++||+.++|+++.|||++|++++|+|++....... . .....+.++++|.
T Consensus 1 ~~~i~t~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~-~--~~~~~~~~~~~E~ 77 (155)
T PF00160_consen 1 FVDIETSGLGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGGYG-R--EDSTGGEPIPDEF 77 (155)
T ss_dssp EEEEEETTEEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSSST-S--EEBTTBSCBSSSG
T ss_pred CEEEEeCCccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCCcc-c--ccccCcccccccc
Confidence 4789997 9999999999999999999999999999999999999999999999988743310 0 0012345688885
Q ss_pred --CCCCCCccEEEEecCC-CCCCCcceEEEEeCCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCCCCccceEEEe
Q 027457 109 --SDVKHVRGILSMGRYS-DPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERITIHS 185 (223)
Q Consensus 109 --~~l~h~~G~lsma~~~-~~~~~~sqFfItl~~~~~ldg~~~vFG~Vv~G~~vl~~I~~~~~~~~~~~~~P~~~i~I~~ 185 (223)
..+.|.+|+|+|++++ ++++++|||||+|++.++||++|+|||+|++||++|++|++++++. +|.++|+|.+
T Consensus 78 ~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-----~p~~~v~I~~ 152 (155)
T PF00160_consen 78 NPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE-----RPKQDVTISS 152 (155)
T ss_dssp BTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT-----EBSSTEEEEE
T ss_pred ccccccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC-----ccCCCeEEEE
Confidence 4688899999999953 5889999999999999999999999999999999999999988866 6999999999
Q ss_pred eee
Q 027457 186 SYY 188 (223)
Q Consensus 186 ~~v 188 (223)
|+|
T Consensus 153 cgv 155 (155)
T PF00160_consen 153 CGV 155 (155)
T ss_dssp EEE
T ss_pred eEC
Confidence 997
No 23
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=4.2e-39 Score=253.01 Aligned_cols=144 Identities=35% Similarity=0.514 Sum_probs=127.7
Q ss_pred EEEEeceeEEEEEcCCCChhhHHHHHHhhcCCccCCceEEEEecCCEEEeecCCCCCCCCCcchhhcccCccccCCc-CC
Q 027457 32 VFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVGEF-SD 110 (223)
Q Consensus 32 ~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~g~~~~~e~-~~ 110 (223)
+++|+.|+|+|+||.+.||++|+||++||++++|+++.|||++|++++|+||+....... ...+..+++|. +.
T Consensus 1 ~~~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~------~~~~~~~~~E~~~~ 74 (146)
T cd00317 1 TLDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG------SGPGYKFPDENFPL 74 (146)
T ss_pred CeEeccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCCCCCC------CcCCCccCCccccC
Confidence 478999999999999999999999999999999999999999999999999988744321 11356777784 44
Q ss_pred CCC-CccEEEEecCCCCCCCcceEEEEeCCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCCCCccceEEEe
Q 027457 111 VKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERITIHS 185 (223)
Q Consensus 111 l~h-~~G~lsma~~~~~~~~~sqFfItl~~~~~ldg~~~vFG~Vv~G~~vl~~I~~~~~~~~~~~~~P~~~i~I~~ 185 (223)
..| ++|+|+|++ .++++++|||||++++.++||++|+|||+|++||++|++|++.++++++ +|.++|+|.+
T Consensus 75 ~~~~~~G~v~~~~-~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~---~P~~~i~I~~ 146 (146)
T cd00317 75 KYHHRRGTLSMAN-AGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENG---RPIKPVTISD 146 (146)
T ss_pred cCcCCCcEEEEee-CCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCC---cCcCceEEeC
Confidence 435 999999999 6678999999999999999999999999999999999999999999877 9999999973
No 24
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-39 Score=280.71 Aligned_cols=162 Identities=22% Similarity=0.422 Sum_probs=146.9
Q ss_pred CCcEEEEEEeceeEEEEEcCCCChhhHHHHHHhhcCCccCCceEEEEecCCEEEeecCCC-CCCCCCcchhhcccCcccc
Q 027457 27 GSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRSAPMNEVQRVEAEKTVV 105 (223)
Q Consensus 27 ~~~~v~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~ri~~~~~iq~Gd~~~-~~~~~~~~~~~~~~g~~~~ 105 (223)
.+.+|.+.|+.|+|.||||+..||++|.||++||..|||+|+.|||++|+|++|||||++ |.|.. ..+|.++.
T Consensus 11 ttgkvil~TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggdp~~~gtGge------siyg~~fa 84 (439)
T KOG0885|consen 11 TTGKVILKTTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGDPTGTGTGGE------SIYGRPFA 84 (439)
T ss_pred ccceEEEEeccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCCCCCCCCCcc------ccccccch
Confidence 467999999999999999999999999999999999999999999999999999999997 33311 01466777
Q ss_pred CC-cCCCCC-CccEEEEecCCCCCCCcceEEEEeCCCCCCCCCCcEEEEEE-cChHHHHHHhcCCCCCCCCCCCCccceE
Q 027457 106 GE-FSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVT-KGDETLRKLEGLPTRKEGIFVMPTERIT 182 (223)
Q Consensus 106 ~e-~~~l~h-~~G~lsma~~~~~~~~~sqFfItl~~~~~ldg~~~vFG~Vv-~G~~vl~~I~~~~~~~~~~~~~P~~~i~ 182 (223)
+| +++|++ ++|+|+||+ .+.+.|||||||||++++||+++|++||+|+ +.+..+-+|..+.++.+. ||..+-+
T Consensus 85 dE~h~Rlrf~rrGlvgman-a~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~---Rp~~p~k 160 (439)
T KOG0885|consen 85 DEFHPRLRFNRRGLVGMAN-AGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADD---RPVDPPK 160 (439)
T ss_pred hhcCcceeeeccceeeecc-cCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhccccccccc---CCCCccc
Confidence 78 789999 999999999 5569999999999999999999999999999 789999999999999887 9999999
Q ss_pred EEeeeeecCCcchhHH
Q 027457 183 IHSSYYYDTEMEICEK 198 (223)
Q Consensus 183 I~~~~vl~~~~~~~~~ 198 (223)
|.+|.|+..+|++...
T Consensus 161 I~s~EV~~npFdDI~p 176 (439)
T KOG0885|consen 161 IKSVEVLINPFDDIKP 176 (439)
T ss_pred eeeeEeecCchhhcch
Confidence 9999999999988654
No 25
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-38 Score=273.43 Aligned_cols=164 Identities=29% Similarity=0.434 Sum_probs=145.3
Q ss_pred EEEEEEeceeEEEEEcCCCChhhHHHHHHhhcCCccCCceEEEEecCCEEEeecCCC-CCCC-CCcchhhcccCccccCC
Q 027457 30 RVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRSA-PMNEVQRVEAEKTVVGE 107 (223)
Q Consensus 30 ~v~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~ri~~~~~iq~Gd~~~-~~~~-~~~~~~~~~~g~~~~~e 107 (223)
.|+++|++|+|+|+||.+.+|.+|.||++||+-.||+.|.||.|..+|++|.|||++ |.|. .+.....++.+..+..|
T Consensus 2 sVlieTtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~GG~si~~~lyG~q~rffeaE 81 (479)
T KOG0415|consen 2 SVLIETTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDGGESIYGVLYGEQARFFEAE 81 (479)
T ss_pred cEEEEeecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCCcceeeeecccccchhhhhh
Confidence 489999999999999999999999999999999999999999999999999999998 4432 22222223334445566
Q ss_pred -cCCCCC-CccEEEEecCCCCCCCcceEEEEeCCC-CCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCCCCccceEEE
Q 027457 108 -FSDVKH-VRGILSMGRYSDPNSAASSFSILLGDA-PHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERITIH 184 (223)
Q Consensus 108 -~~~l~h-~~G~lsma~~~~~~~~~sqFfItl~~~-~~ldg~~~vFG~Vv~G~~vl~~I~~~~~~~~~~~~~P~~~i~I~ 184 (223)
.+.++| +.|+|||++ ++.|.+||||||||+++ ..|||+|+|||+|++||++|.+|+..-++..+ +|.++|+|.
T Consensus 82 ~~p~l~Hsk~G~vsmvs-~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~---rPykdIRI~ 157 (479)
T KOG0415|consen 82 FLPKLKHSKMGTVSMVS-AGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKN---RPYKDIRIK 157 (479)
T ss_pred hcccccccccceEEeec-CCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCC---Ccccceeee
Confidence 688999 999999999 88899999999999876 79999999999999999999999999999999 999999999
Q ss_pred eeeeecCCcchhH
Q 027457 185 SSYYYDTEMEICE 197 (223)
Q Consensus 185 ~~~vl~~~~~~~~ 197 (223)
+..||++||++|.
T Consensus 158 HTiiLdDPFddpp 170 (479)
T KOG0415|consen 158 HTIILDDPFDDPP 170 (479)
T ss_pred eeEEecCCCCCch
Confidence 9999999888765
No 26
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-39 Score=261.42 Aligned_cols=158 Identities=25% Similarity=0.343 Sum_probs=139.3
Q ss_pred CCCCCCcEEEEEEe-----ceeEEEEEcCCCChhhHHHHHHhhcC--C-ccCCceEEEEecCCEEEeecCCCCCCCCCcc
Q 027457 23 DPQLGSARVVFQTN-----YGDIEFGFYPSVAPQTVDHIFKLVRL--G-CYNTNHFFRVDKGFVAQVADVVGGRSAPMNE 94 (223)
Q Consensus 23 ~~~~~~~~v~~~t~-----~G~i~ieL~~~~aP~t~~nF~~L~~~--g-~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~ 94 (223)
..++.+|.|+++.. .|+|+++|..|..|+|++||..||.+ | .|+|++||||+|.|++||||.++++|....
T Consensus 131 kaa~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggk- 209 (298)
T KOG0111|consen 131 KAAMENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGK- 209 (298)
T ss_pred hhhhhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCc-
Confidence 35567888988865 89999999999999999999999964 3 599999999999999999999998876211
Q ss_pred hhhcccCccccCCcCCCCC-CccEEEEecCCCCCCCcceEEEEeCCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCC
Q 027457 95 VQRVEAEKTVVGEFSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGI 173 (223)
Q Consensus 95 ~~~~~~g~~~~~e~~~l~h-~~G~lsma~~~~~~~~~sqFfItl~~~~~ldg~~~vFG~Vv~G~~vl~~I~~~~~~~~~~ 173 (223)
..+|..+.+|+..|+| .+|+||||+ +++|+|||||||++....||||+|+|||+|++||+||+++++.++..+
T Consensus 210 ---siygkkfddenf~lkht~pgtlsman-sgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksg-- 283 (298)
T KOG0111|consen 210 ---SIYGKKFDDENFTLKHTMPGTLSMAN-SGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSG-- 283 (298)
T ss_pred ---ccccccccccceeeecCCCceeeccc-cCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCC--
Confidence 1134455667778999 999999999 899999999999999999999999999999999999999999988765
Q ss_pred CCCCccceEEEeeeee
Q 027457 174 FVMPTERITIHSSYYY 189 (223)
Q Consensus 174 ~~~P~~~i~I~~~~vl 189 (223)
+|.+.|+|.+|+.+
T Consensus 284 --kp~qkv~i~~cge~ 297 (298)
T KOG0111|consen 284 --KPQQKVKIVECGEI 297 (298)
T ss_pred --CcceEEEEEecccc
Confidence 89999999999986
No 27
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=9.6e-37 Score=246.67 Aligned_cols=133 Identities=35% Similarity=0.427 Sum_probs=106.0
Q ss_pred EEeceeEEEEEcCCCChhhHHHHHHhhcCCccCCceEEEEecCCEEEeecCCCCC-CC---------CCcchhh------
Q 027457 34 QTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGGR-SA---------PMNEVQR------ 97 (223)
Q Consensus 34 ~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~ri~~~~~iq~Gd~~~~~-~~---------~~~~~~~------ 97 (223)
.|+.|+|+|+||++.||+||+||++||+.+||+++.||||+++|++||||+.+.. +. +++.+..
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~ 82 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQ 82 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCCC
Confidence 5899999999999999999999999999999999999999999999999997631 11 0111000
Q ss_pred cccCccc-----cCCcCC-CCCCccEEEEecCCC-CCCCcceEEEEeC-------CCCCCCCCCcEEEEEEcChHHHHHH
Q 027457 98 VEAEKTV-----VGEFSD-VKHVRGILSMGRYSD-PNSAASSFSILLG-------DAPHLDGQYAVFGKVTKGDETLRKL 163 (223)
Q Consensus 98 ~~~g~~~-----~~e~~~-l~h~~G~lsma~~~~-~~~~~sqFfItl~-------~~~~ldg~~~vFG~Vv~G~~vl~~I 163 (223)
...+..+ .++.+. +.|.+|+||||+.++ +++++|||||+++ +.++||++|+|||+|++|||||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~I 162 (176)
T cd01924 83 PVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILREL 162 (176)
T ss_pred CccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHHhh
Confidence 0011111 123333 445999999999655 5999999999998 7899999999999999999999999
Q ss_pred hcC
Q 027457 164 EGL 166 (223)
Q Consensus 164 ~~~ 166 (223)
+..
T Consensus 163 ~~g 165 (176)
T cd01924 163 KVG 165 (176)
T ss_pred cCC
Confidence 653
No 28
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-31 Score=213.43 Aligned_cols=154 Identities=27% Similarity=0.389 Sum_probs=130.7
Q ss_pred CCcEEEEEE-----eceeEEEEEcCCCChhhHHHHHHhhcCC---ccCCceEEEE---ecCCEEEeecCCCCCCCCCcch
Q 027457 27 GSARVVFQT-----NYGDIEFGFYPSVAPQTVDHIFKLVRLG---CYNTNHFFRV---DKGFVAQVADVVGGRSAPMNEV 95 (223)
Q Consensus 27 ~~~~v~~~t-----~~G~i~ieL~~~~aP~t~~nF~~L~~~g---~Y~g~~f~ri---~~~~~iq~Gd~~~~~~~~~~~~ 95 (223)
.+++|+|+. .+|+++++||.|..|+|++||..||.+. .|++..|||+ ++++++||||.+.+++......
T Consensus 2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSi 81 (167)
T KOG0865|consen 2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSI 81 (167)
T ss_pred CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEe
Confidence 467888885 4899999999999999999999999732 4999999993 3479999999998877411110
Q ss_pred hhcccCccccCCcCCCCC-CccEEEEecCCCCCCCcceEEEEeCCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCC
Q 027457 96 QRVEAEKTVVGEFSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIF 174 (223)
Q Consensus 96 ~~~~~g~~~~~e~~~l~h-~~G~lsma~~~~~~~~~sqFfItl~~~~~ldg~~~vFG~Vv~G~~vl~~I~~~~~~~~~~~ 174 (223)
++..+.+|+..++| .+|+||||| .+||+|+|||||++...+|||++|+|||+|.+||+++++|+..+...+
T Consensus 82 ----y~ekF~DenFilkhtgpGiLSmaN-agpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~g--- 153 (167)
T KOG0865|consen 82 ----YGEKFDDENFILKHTGPGILSMAN-AGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRNG--- 153 (167)
T ss_pred ----cccccCCcCcEEecCCCCeeehhh-cCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcCC---
Confidence 23444555677999 899999999 789999999999999999999999999999999999999999777654
Q ss_pred CCCccceEEEeeeee
Q 027457 175 VMPTERITIHSSYYY 189 (223)
Q Consensus 175 ~~P~~~i~I~~~~vl 189 (223)
+|.++|.|.+|+.+
T Consensus 154 -k~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 154 -KTSKKITIADCGQL 167 (167)
T ss_pred -cccccEEEecCCcC
Confidence 89999999999864
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.5e-06 Score=78.27 Aligned_cols=156 Identities=17% Similarity=0.114 Sum_probs=123.5
Q ss_pred EEEEEEece----eEEEEEcCCCChhhHHHHHHhhcCCccCCceEEEEecCCEEEeecCCCCCCC-CCcchhhcccCccc
Q 027457 30 RVVFQTNYG----DIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGGRSA-PMNEVQRVEAEKTV 104 (223)
Q Consensus 30 ~v~~~t~~G----~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~ri~~~~~iq~Gd~~~~~~~-~~~~~~~~~~g~~~ 104 (223)
.+.+.|+.| .|.|+++.+-.|.-++-|..+|+.+++++..|.+|...+++|.||....... .+-.....++...+
T Consensus 100 ~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qf 179 (558)
T KOG0882|consen 100 FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQF 179 (558)
T ss_pred ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccC
Confidence 445667888 8999999999999999999999999999999999999999999986542221 11111111122223
Q ss_pred cCC--cCCCCCCccEEEEecCCCCCCCcceEEEEeCCCCCCCCCCcEEEEEEcChHHHHHHhcCCCCCCCCCCCCccceE
Q 027457 105 VGE--FSDVKHVRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERIT 182 (223)
Q Consensus 105 ~~e--~~~l~h~~G~lsma~~~~~~~~~sqFfItl~~~~~ldg~~~vFG~Vv~G~~vl~~I~~~~~~~~~~~~~P~~~i~ 182 (223)
++. ...++|..-++.+.. ......+-+|++.-...+.+..+..|||++..|-++++.|.+..++... .|..++.
T Consensus 180 Pr~~l~~~~K~eTdLy~f~K-~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~---q~ks~y~ 255 (558)
T KOG0882|consen 180 PRTNLNFELKHETDLYGFPK-AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQY---QPKSPYG 255 (558)
T ss_pred ccccccccccccchhhcccc-cccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhh---ccccccc
Confidence 332 567889888888887 4455567789998888889999999999999999999999999999887 8999999
Q ss_pred EEeeeee
Q 027457 183 IHSSYYY 189 (223)
Q Consensus 183 I~~~~vl 189 (223)
|.++...
T Consensus 256 l~~Velg 262 (558)
T KOG0882|consen 256 LMHVELG 262 (558)
T ss_pred cceeehh
Confidence 9998665
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.32 E-value=0.029 Score=51.78 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=63.0
Q ss_pred ceeEEEEEcCCCChhhHHHHHHhhcCCc--cCCceEEEEecCCEEEeecCCCCCCCCCcchhhcccCccccCC-cCCCCC
Q 027457 37 YGDIEFGFYPSVAPQTVDHIFKLVRLGC--YNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVGE-FSDVKH 113 (223)
Q Consensus 37 ~G~i~ieL~~~~aP~t~~nF~~L~~~g~--Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~g~~~~~e-~~~l~h 113 (223)
..-|.|+||.+.||+|+..|+++----. -=-..+|-..++.++--|+... +..+..| .+.-+-
T Consensus 374 ~~vi~IeLydd~AP~s~~yFRk~tGL~~~~VG~L~v~F~~~d~~mFk~~~~~--------------~k~LiPEN~P~~~V 439 (503)
T TIGR03268 374 DKVIEIELYDDNAPRSVWYFRKFTGLKTKPVGRLPVHFAFKEMIMFKGNKEL--------------AKGLIPENTPEDKV 439 (503)
T ss_pred HhEEEEEEcccCCchHHHHHHHhcCCcccccceeEEEEEeCCeeEeccCchh--------------ccccCCCCCCCCcc
Confidence 4459999999999999999998852111 1113444445554333222221 2223333 333344
Q ss_pred CccEEEEecCCCCCCCcceEEEEeCCCCCCC------CCCcEEEEEEcChHHHHHHhcC
Q 027457 114 VRGILSMGRYSDPNSAASSFSILLGDAPHLD------GQYAVFGKVTKGDETLRKLEGL 166 (223)
Q Consensus 114 ~~G~lsma~~~~~~~~~sqFfItl~~~~~ld------g~~~vFG~Vv~G~~vl~~I~~~ 166 (223)
.+|.|++-|....+.. -.=|-|.++..+. ..--++|+|+++++.|.++...
T Consensus 440 ~ag~IgvTN~a~k~~G--~IGVRl~d~defGPTGE~F~gTNIiG~Vv~~~e~Lk~~KeG 496 (503)
T TIGR03268 440 EAGVIGVTNQACKHVG--MIGVRLEDSDEFGPTGEPFSGTNIIGRVVEGMERLKGLKEG 496 (503)
T ss_pred ccceEeeechhhhcCc--eEEEEccCCcccCCCCCCccCcceEEEecCChhHhcccccC
Confidence 7788887774322110 1122233332221 2345889999999999888653
No 31
>PRK00969 hypothetical protein; Provisional
Probab=95.53 E-value=0.14 Score=47.46 Aligned_cols=112 Identities=19% Similarity=0.170 Sum_probs=62.4
Q ss_pred ceeEEEEEcCCCChhhHHHHHHhhcCCcc--CCceEEEEecCCEEEeecCCCCCCCCCcchhhcccCccccCC-cCCCCC
Q 027457 37 YGDIEFGFYPSVAPQTVDHIFKLVRLGCY--NTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVGE-FSDVKH 113 (223)
Q Consensus 37 ~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y--~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~g~~~~~e-~~~l~h 113 (223)
.--|.|+||.+.||+|+..|+++..--.. =-..+|-..++.++--|+... +..+..| .+.-+-
T Consensus 377 ~~vi~IeLydd~AP~s~~yFR~~tGL~~~~VG~L~v~F~~~d~~lFk~~~~~--------------~k~liPEN~P~~~V 442 (508)
T PRK00969 377 DKLIEIELYDDKAPRTVWYFRKVTGLKTKPVGKLPVYFKYEDTYLFKGNIEY--------------AKGLLPENTPEDKV 442 (508)
T ss_pred HHEEEEEEcCcCCchHHHHHHHhcCCcccccceeEEEEEeCCeEEEccChhh--------------ccccCCCCCCCCcc
Confidence 44599999999999999999988631110 113444445554444222221 2223333 344444
Q ss_pred CccEEEEecCCCCCCCcceEEEEeCCCCCCC------CCCcEEEEEEcChHHHHHHhc
Q 027457 114 VRGILSMGRYSDPNSAASSFSILLGDAPHLD------GQYAVFGKVTKGDETLRKLEG 165 (223)
Q Consensus 114 ~~G~lsma~~~~~~~~~sqFfItl~~~~~ld------g~~~vFG~Vv~G~~vl~~I~~ 165 (223)
.+|.|++-|....+. | -.=|-|.++..+. ..--++|+|+ +++-|.++..
T Consensus 443 ~ag~IgvTN~a~k~~-G-~iGVR~~d~d~fGPTGE~F~gTNIIGrVv-~~e~Lk~lKe 497 (508)
T PRK00969 443 KAGEIGVTNMAAKYK-G-MIGVRLSDNDEFGPTGEPFEGTNIIGRVV-NLEKLKKLKE 497 (508)
T ss_pred ccceEeeechhhhcC-c-eEEEEccCCcccCCCCCCccCceeEEEec-ChHHhccccc
Confidence 778887777432211 0 1122233332222 2345899999 9999888765
No 32
>PRK00969 hypothetical protein; Provisional
Probab=95.52 E-value=0.16 Score=47.19 Aligned_cols=120 Identities=13% Similarity=0.133 Sum_probs=73.0
Q ss_pred CCcEEEEEEeceeEEEEEcCCCChhhHHHHHHhhcCCccCCceEEEEecCCEEEeecCCCCCCCCCcchhhcccCccccC
Q 027457 27 GSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVG 106 (223)
Q Consensus 27 ~~~~v~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~g~~~~~ 106 (223)
......+.|+.|.|+|+|. ....++..|+..++. |.|...|=-.++ -+..|-... .+..
T Consensus 49 ~~~~y~IkTtkG~i~Iel~--~~~~~~~~w~e~yk~--~e~~~i~W~s~~-~vAfGp~~s----------------~l~p 107 (508)
T PRK00969 49 ETKKYRIKTTKGEIVIELT--EENESVDFWLENYKE--FEGKSLRWTSRS-AVAFGPFES----------------DLEP 107 (508)
T ss_pred ccceEEEEccCceEEEEEc--cCcchhhHHHHhHHh--hcCCceEecccc-ceeEccccc----------------Cccc
Confidence 3567889999999999999 355566666665543 344444422222 222221111 1111
Q ss_pred CcCCCCCCccEEEEecCCCCCCCcceEEEEeCCCCCCCCC--CcEEEEEEcChHHHHHHhcCCC
Q 027457 107 EFSDVKHVRGILSMGRYSDPNSAASSFSILLGDAPHLDGQ--YAVFGKVTKGDETLRKLEGLPT 168 (223)
Q Consensus 107 e~~~l~h~~G~lsma~~~~~~~~~sqFfItl~~~~~ldg~--~~vFG~Vv~G~~vl~~I~~~~~ 168 (223)
....-.+.++-|.+.- ++-+...+.+.|+..+....-|- --+||+|+.|..+|+++...+.
T Consensus 108 ~~~~~~y~r~DV~lg~-~G~dp~~thLIfsk~~h~a~YG~p~~gv~grVi~Gk~vl~~L~~~D~ 170 (508)
T PRK00969 108 SREEYEYERWDVVLSL-SGFDPSETHLIFSKRDHSADYGAPNDGVIGRVVGGKRVLDRLTDGDR 170 (508)
T ss_pred ccCcceeecccEEEEc-cCCCCCCceEEEEecchhhhhCCCCCCceEEEccchhhHhhccCCCe
Confidence 1222334788888877 66666677777776655322221 2799999999999999977543
No 33
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.16 Score=45.86 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChhhHHHHHHhhc
Q 027457 39 DIEFGFYPSVAPQTVDHIFKLVR 61 (223)
Q Consensus 39 ~i~ieL~~~~aP~t~~nF~~L~~ 61 (223)
-|.||||.+.||+++..|.++..
T Consensus 377 iieIELyed~APrSv~yFRr~t~ 399 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTG 399 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhcc
Confidence 48999999999999999998863
No 34
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=0.081 Score=47.63 Aligned_cols=99 Identities=23% Similarity=0.274 Sum_probs=61.8
Q ss_pred eEEEEEcCCCChhhHHHHHHhhcCCc----cCCceEEEEecCCEEEeecCCCCCCCCCcchhhcccCccccCCcCCCCCC
Q 027457 39 DIEFGFYPSVAPQTVDHIFKLVRLGC----YNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVGEFSDVKHV 114 (223)
Q Consensus 39 ~i~ieL~~~~aP~t~~nF~~L~~~g~----Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~g~~~~~e~~~l~h~ 114 (223)
.+.++|..+ +|+++++|++|.+.|. |.-.+|--.. -. .+..++.|+. ....
T Consensus 204 y~eve~s~n-sP~saEH~lalmedG~lri~~~tntfis~~---~l--------------------q~~~~~~en~-d~Re 258 (512)
T COG4070 204 YFEVELSRN-SPKSAEHFLALMEDGTLRIDVTTNTFISDD---TL--------------------QEEKVPEENF-DLRE 258 (512)
T ss_pred EEEEEeCCC-CchhHHHHHHHhhcceEEEEEeccceeecc---cc--------------------ccccCChhhh-hhhh
Confidence 377888876 9999999999998874 2222221110 00 1222333322 1237
Q ss_pred ccEEEEecCCCCCCCcceEEEEeCCCCCCCCCCcEEEEEEcChHHHHHHhcC
Q 027457 115 RGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRKLEGL 166 (223)
Q Consensus 115 ~G~lsma~~~~~~~~~sqFfItl~~~~~ldg~~~vFG~Vv~G~~vl~~I~~~ 166 (223)
+|.++.-|.+ -+ .-.-||.-.+-+. --.|.+.|+|++||++++--...
T Consensus 259 rG~iTvRn~G-vg--eGrvYIyRedR~s-s~sHnvVGrV~eGiELid~a~eG 306 (512)
T COG4070 259 RGAITVRNVG-VG--EGRVYIYREDRPS-SLSHNVVGRVIEGIELIDLAEEG 306 (512)
T ss_pred cceEEEEeee-cc--cceEEEEecCCCC-ccccceeeeeecceEEEEecccC
Confidence 9999998843 22 2257787655432 23699999999999998765443
No 35
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=94.28 E-value=0.59 Score=43.41 Aligned_cols=119 Identities=7% Similarity=0.043 Sum_probs=72.3
Q ss_pred CCcEEEEEEeceeEEEEEcCCCChhhHHHHHHhhcCCccCCceEEEEecCCEEEeecCCCCCCCCCcchhhcccCccccC
Q 027457 27 GSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVVG 106 (223)
Q Consensus 27 ~~~~v~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~g~~~~~ 106 (223)
......+.|+.|.|+|+|-. ...+++-|+..++. |-|...|=..+. -+..|-... .+..
T Consensus 45 ~~~~y~IkTtkG~i~iel~~--~~~~~~~w~e~y~~--~e~~~i~W~s~~-~vAfGp~~s----------------dl~p 103 (503)
T TIGR03268 45 ETKEYLIKTTKGEVVIELTP--NTEAGKFWSEIYKE--LEGKQIRWTTPQ-EVAFGPFPS----------------DLEP 103 (503)
T ss_pred ccceEEEEccCceEEEEecC--CchHHHHHHHHHHh--hcCCceeecchh-heeeCcccC----------------Cccc
Confidence 35677899999999999994 55567667655543 334433322111 122221111 0111
Q ss_pred CcCCCCCCccEEEEecCCCCCCCcceEEEEeCCCCCCC---CCCcEEEEEEcChHHHHHHhcCC
Q 027457 107 EFSDVKHVRGILSMGRYSDPNSAASSFSILLGDAPHLD---GQYAVFGKVTKGDETLRKLEGLP 167 (223)
Q Consensus 107 e~~~l~h~~G~lsma~~~~~~~~~sqFfItl~~~~~ld---g~~~vFG~Vv~G~~vl~~I~~~~ 167 (223)
....-.+.++-|.+.- ++-+...+.+.|+-.+....- ...-+||+|+.|..+|+++...+
T Consensus 104 ~~~~~~y~r~DV~lg~-~G~d~~~thLIfsk~~h~~~YG~p~~~gvigrvi~Gk~vl~~L~~~D 166 (503)
T TIGR03268 104 SREPSEYERWDVILSL-SGFDPDETHIIFSKKRHAAEYGVPDENGIIARVVGGKRVIDRLSDGD 166 (503)
T ss_pred cCCcceeecccEEEEc-cCCCCCCceEEEEecchhhhhCCCCCCCEEEEEccchhhHhhccCCC
Confidence 1122334788888877 666666777777776654211 14579999999999999997744
No 36
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=93.41 E-value=0.25 Score=38.79 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=20.3
Q ss_pred eceeEEEEEcCCCChhhHHHHHHhh
Q 027457 36 NYGDIEFGFYPSVAPQTVDHIFKLV 60 (223)
Q Consensus 36 ~~G~i~ieL~~~~aP~t~~nF~~L~ 60 (223)
.--.++.+|..|.||+||+.|.+..
T Consensus 6 ~g~~~~A~l~~d~AP~Tcaa~~~~L 30 (147)
T PF12903_consen 6 RGVSFTARLLDDKAPKTCAAFWEAL 30 (147)
T ss_dssp TTEEEEEEE-TTTSHHHHHHHHHH-
T ss_pred CCeEEEEEEcccCChHHHHHHHHhC
Confidence 3456889999999999999999987
No 37
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=93.20 E-value=0.092 Score=39.40 Aligned_cols=37 Identities=30% Similarity=0.324 Sum_probs=33.2
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEEec
Q 027457 1 MLNVIRIFLTLITLIGTASSQEDPQLGSARVVFQTNY 37 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~ 37 (223)
||+++.+++.+++|.+|++..+.+......|+|+|+.
T Consensus 1 Mrk~~~~~l~~~lLvGCsS~~~i~~~~~q~vvm~~s~ 37 (123)
T COG5633 1 MRKLCLLSLALLLLVGCSSHQEILVNDEQSVVMETSV 37 (123)
T ss_pred CceehHHHHHHHHhhccCCCCCccccccceeeecccc
Confidence 8999999999999999999988888888899999973
No 38
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=90.65 E-value=0.21 Score=27.18 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=16.2
Q ss_pred ChhHHHHHHHHHHHHhccC
Q 027457 1 MLNVIRIFLTLITLIGTAS 19 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (223)
|||++..+++++.|++|+.
T Consensus 7 mKkil~~l~a~~~LagCss 25 (25)
T PF08139_consen 7 MKKILFPLLALFMLAGCSS 25 (25)
T ss_pred HHHHHHHHHHHHHHhhccC
Confidence 4899999999999998874
No 39
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=81.57 E-value=18 Score=27.25 Aligned_cols=100 Identities=16% Similarity=0.210 Sum_probs=54.8
Q ss_pred EEEEEEeceeEEEEEcCCCChhhHHHHHHhhc----CCccCCceEEEEecCCEEEeecCCCCCCCCCcchhhcccCcccc
Q 027457 30 RVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVR----LGCYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKTVV 105 (223)
Q Consensus 30 ~v~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~----~g~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~g~~~~ 105 (223)
++.++.....+.++|+.. .|++.|.+..= -..|- ..++--.|. .+.
T Consensus 2 kI~i~i~~~~~~a~L~d~---~ta~~~~~~LPlt~~~~~~g-~E~y~~~p~--------------------------~l~ 51 (120)
T PF04126_consen 2 KIKITIGGQEIEAELNDS---PTARAFAAQLPLTVTMNDWG-NEKYFSLPL--------------------------KLP 51 (120)
T ss_dssp EEEEEETTEEEEEEEETT---HHHHHHHHC-SEEEEEEECT-TEEEEE-S------------------------------
T ss_pred eEEEEECCEEEEEEECCC---HHHHHHHHhCCeEEEHHHCC-ceEEEeCCC--------------------------CCC
Confidence 466777788899999998 78888888751 11232 222211111 001
Q ss_pred -CCcCCCCCCccEEEEecCCCCCCCcceEEEEeCCCC-------CCCCCCcEEEEEEcChHHHHHHhc
Q 027457 106 -GEFSDVKHVRGILSMGRYSDPNSAASSFSILLGDAP-------HLDGQYAVFGKVTKGDETLRKLEG 165 (223)
Q Consensus 106 -~e~~~l~h~~G~lsma~~~~~~~~~sqFfItl~~~~-------~ldg~~~vFG~Vv~G~~vl~~I~~ 165 (223)
++...-....|-|+.-. .+. -|-|-+++.| .+-....++|+|++|.+.+.++..
T Consensus 52 ~~~~~~~~~~~GDi~Yw~-pg~-----~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 52 TEENPRSSVEAGDIAYWP-PGG-----ALAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp -SSSEESSB-TTEEEEEC-CCT-----EEEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred cccCccccccCceEEEeC-CCC-----EEEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 11112223788888765 222 3777777764 344568999999999998887743
No 40
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=67.18 E-value=11 Score=30.93 Aligned_cols=34 Identities=12% Similarity=0.158 Sum_probs=20.6
Q ss_pred CCCCCcEEEEEEe-ceeE-EEEEcCCCChhhHHHHHH
Q 027457 24 PQLGSARVVFQTN-YGDI-EFGFYPSVAPQTVDHIFK 58 (223)
Q Consensus 24 ~~~~~~~v~~~t~-~G~i-~ieL~~~~aP~t~~nF~~ 58 (223)
+..+..+..+... .|.. ++|.|.-.|| .|.+|..
T Consensus 22 ~~~G~~Y~~~~~p~~~~~~VvEffdy~Cp-hC~~~~~ 57 (207)
T PRK10954 22 FTDGKQYTTLDKPVAGEPQVLEFFSFYCP-HCYQFEE 57 (207)
T ss_pred ccCCceeEEecCcCCCCCeEEEEeCCCCc-cHHHhcc
Confidence 3334444444433 2333 7889999998 6777765
No 41
>PRK11627 hypothetical protein; Provisional
Probab=64.89 E-value=11 Score=30.84 Aligned_cols=22 Identities=18% Similarity=0.381 Sum_probs=16.5
Q ss_pred ChhHHHHHHHHHHHHhccCCCC
Q 027457 1 MLNVIRIFLTLITLIGTASSQE 22 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~ 22 (223)
|||+++.++++++|.+|++++.
T Consensus 2 lkklll~l~a~~~L~gCA~~p~ 23 (192)
T PRK11627 2 LKKILFPLVALFMLAGCATPSN 23 (192)
T ss_pred hHHHHHHHHHHHHHHhhcCCCC
Confidence 5688877777777888987743
No 42
>PRK13792 lysozyme inhibitor; Provisional
Probab=62.27 E-value=18 Score=27.69 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=12.9
Q ss_pred ChhHHHHHHHHHH--HHhccCCCCCC
Q 027457 1 MLNVIRIFLTLIT--LIGTASSQEDP 24 (223)
Q Consensus 1 m~~~~~~~~~~~~--~~~~~~~~~~~ 24 (223)
||+.++++++... |++|+..+..+
T Consensus 1 mk~~l~~ll~~~~~lLsaCs~~~~~~ 26 (127)
T PRK13792 1 MKKALWLLLAAVPVVLVACGGSDDDK 26 (127)
T ss_pred ChhHHHHHHHHHHhheecccCCCCCc
Confidence 8766555554333 55565555443
No 43
>PF10880 DUF2673: Protein of unknown function (DUF2673); InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=61.48 E-value=9 Score=24.95 Aligned_cols=18 Identities=28% Similarity=0.312 Sum_probs=13.6
Q ss_pred ChhHHHHHHHHHHHHhcc
Q 027457 1 MLNVIRIFLTLITLIGTA 18 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~ 18 (223)
||+++.+++++++..+..
T Consensus 1 mknllkillilafa~pvf 18 (65)
T PF10880_consen 1 MKNLLKILLILAFASPVF 18 (65)
T ss_pred ChhHHHHHHHHHHhhhHh
Confidence 899999888877765443
No 44
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=61.22 E-value=19 Score=28.10 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=26.8
Q ss_pred HHHHHHHHhccCCCCCCCCCCcEEEEEEe-------ce---eEEEEEcCCCChhhH--HHHHHhhc
Q 027457 8 FLTLITLIGTASSQEDPQLGSARVVFQTN-------YG---DIEFGFYPSVAPQTV--DHIFKLVR 61 (223)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~v~~~t~-------~G---~i~ieL~~~~aP~t~--~nF~~L~~ 61 (223)
+++.+++.+|+++.+.+.+..-.+.+..+ .| .|++.+|-=..+..- .-|..|.+
T Consensus 7 l~~~llL~gC~s~~~~~~~~~v~l~i~a~~~lNp~~~g~p~PvvvrvyqL~d~~~F~~adf~~L~~ 72 (146)
T TIGR03352 7 LAACLLLAGCSSAPPPKEPTYVTLTLTAAPDVNPDEDGRASPVVVRVYELKSDTKFEAADFFALTE 72 (146)
T ss_pred HHHHHHHhhccCCCCCCCCeEEEEEEEecCCcCCCCCCCccCeEEEEEEECCccccccCCHHHHHh
Confidence 33334567777665444333344444442 44 478877754343322 23455543
No 45
>PRK11372 lysozyme inhibitor; Provisional
Probab=59.07 E-value=33 Score=25.43 Aligned_cols=45 Identities=11% Similarity=0.203 Sum_probs=22.1
Q ss_pred ChhHHHHHHHHHHHHhccCCCCC-CCCCCcEEEEEEeceeEEEEEcC
Q 027457 1 MLNVIRIFLTLITLIGTASSQED-PQLGSARVVFQTNYGDIEFGFYP 46 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~t~~G~i~ieL~~ 46 (223)
||+++ +++++++|++|+..... +......+...=....+++..+.
T Consensus 3 mk~ll-~~~~~~lL~gCs~~~~~~~~~~~~~~~Y~C~~~~~~v~~~~ 48 (109)
T PRK11372 3 MKKLL-IICLPVLLTGCSAYNQFVERMQTDTLEYQCDEKPLTVKLNN 48 (109)
T ss_pred hHHHH-HHHHHHHHHHhcCCccccCCCCCCcEEEEeCCcEEEEEEEC
Confidence 66655 44445557777764332 22222233333334566665553
No 46
>PRK10449 heat-inducible protein; Provisional
Probab=58.87 E-value=9.4 Score=29.50 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=17.0
Q ss_pred ChhHHHHHHHHHHHHhccCCC
Q 027457 1 MLNVIRIFLTLITLIGTASSQ 21 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~ 21 (223)
||+++.++++.+++++|++..
T Consensus 1 mk~~~~~~~~~~~l~~C~~~~ 21 (140)
T PRK10449 1 MKKVVALVALSLLMAGCVSSG 21 (140)
T ss_pred ChhHHHHHHHHHHHHHhcCCC
Confidence 899998887878888887754
No 47
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=58.67 E-value=16 Score=30.19 Aligned_cols=23 Identities=22% Similarity=0.576 Sum_probs=16.6
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCC
Q 027457 1 MLNVIRIFLTLITLIGTASSQEDP 24 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~ 24 (223)
||+++.++ +++++.+|+.....+
T Consensus 1 mk~i~~l~-l~lll~~C~~~~~~~ 23 (216)
T PF11153_consen 1 MKKILLLL-LLLLLTGCSTNPNEP 23 (216)
T ss_pred ChHHHHHH-HHHHHHhhcCCCccC
Confidence 88887777 555777888776664
No 48
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=57.75 E-value=7.9 Score=28.24 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=16.1
Q ss_pred ChhHHHHHHHHHHHHhccCC
Q 027457 1 MLNVIRIFLTLITLIGTASS 20 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~ 20 (223)
||++++...+.+++.+|+++
T Consensus 1 mKk~ll~~~lallLtgCatq 20 (97)
T PF06291_consen 1 MKKLLLAAALALLLTGCATQ 20 (97)
T ss_pred CcHHHHHHHHHHHHccccee
Confidence 89988888777778888765
No 49
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=56.15 E-value=34 Score=29.13 Aligned_cols=35 Identities=20% Similarity=0.068 Sum_probs=25.9
Q ss_pred CCCCCCcEEEEEEeceeEEEEEcCCCChhhHHHHHHhhcCCc
Q 027457 23 DPQLGSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGC 64 (223)
Q Consensus 23 ~~~~~~~~v~~~t~~G~i~ieL~~~~aP~t~~nF~~L~~~g~ 64 (223)
.+.....-|.+-|+.|. .+||..=+||.++++++-
T Consensus 37 ~~~k~~~VVELfTSQGC-------sSCPPAd~~l~k~a~~~~ 71 (261)
T COG5429 37 SAAKPLGVVELFTSQGC-------SSCPPADANLAKLADDPG 71 (261)
T ss_pred CCCCCceEEEEeecCCc-------CCCChHHHHHHHhccCCC
Confidence 33334556667777775 689999999999998763
No 50
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=54.77 E-value=11 Score=29.76 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=16.7
Q ss_pred ChhHHHHHHHHHHHHhccC
Q 027457 1 MLNVIRIFLTLITLIGTAS 19 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (223)
|+|++.+++++++|.+|+.
T Consensus 1 Mrk~l~~~~l~l~LaGCAt 19 (151)
T PRK13883 1 MRKIVLLALLALALGGCAT 19 (151)
T ss_pred ChhHHHHHHHHHHHhcccC
Confidence 8999999998888888985
No 51
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=52.47 E-value=30 Score=30.29 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=26.0
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCCCC-------------CCcEEEEEEeceeEEEEEcC
Q 027457 1 MLNVIRIFLTLITLIGTASSQEDPQL-------------GSARVVFQTNYGDIEFGFYP 46 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~t~~G~i~ieL~~ 46 (223)
|++++..+++++++++.+.+...|.. ++..+.+.|..|..+.-.|+
T Consensus 2 ~~~~~~~~~~~~~~~~~a~A~~~p~~~~~D~RIr~v~Y~p~~V~~V~~~~G~~T~I~f~ 60 (292)
T PRK13861 2 IKKLFLTLACLLFAAIGALAEDTPAAGKLDPRMRYLAYNPDQVVRLSTAVGATLVVTFG 60 (292)
T ss_pred hhHHHHHHHHHHHhccchhHhhcCCCCCCCCceEEEEeCCCCEEEEEEECCcEEEEEEC
Confidence 67777666666544443333333322 35566678888886654444
No 52
>PF05643 DUF799: Putative bacterial lipoprotein (DUF799); InterPro: IPR008517 This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=51.91 E-value=15 Score=30.78 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=18.1
Q ss_pred ChhHHHHHHHHHHHHhccCCCC
Q 027457 1 MLNVIRIFLTLITLIGTASSQE 22 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~ 22 (223)
||+++..++++++|.+|+.+..
T Consensus 1 mk~l~~~l~~~l~LsgCa~~~~ 22 (215)
T PF05643_consen 1 MKKLILGLAAALLLSGCATTKP 22 (215)
T ss_pred ChhHHHHHHHHHHHhhccCCCC
Confidence 9999999888888888876543
No 53
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=50.02 E-value=13 Score=24.17 Aligned_cols=18 Identities=44% Similarity=0.558 Sum_probs=13.3
Q ss_pred ChhHHHHHHHHHHHHhcc
Q 027457 1 MLNVIRIFLTLITLIGTA 18 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~ 18 (223)
||++|+.+++++.+++.+
T Consensus 1 mk~~~~s~~ala~l~sLA 18 (58)
T COG5567 1 MKNVFKSLLALATLFSLA 18 (58)
T ss_pred ChhHHHHHHHHHHHHHHH
Confidence 888888888877666443
No 54
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=49.03 E-value=19 Score=30.22 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=15.2
Q ss_pred ChhHHHHHHHHHHHHhccC
Q 027457 1 MLNVIRIFLTLITLIGTAS 19 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (223)
||+++++++++++|.+|++
T Consensus 1 mk~~~~~~~~~l~l~gCa~ 19 (221)
T PRK12407 1 MKRFLILTALLLALCGCES 19 (221)
T ss_pred ChhHHHHHHHHHHHhhccC
Confidence 8888888877777788875
No 55
>PF11106 YjbE: Exopolysaccharide production protein YjbE
Probab=47.70 E-value=16 Score=25.34 Aligned_cols=19 Identities=16% Similarity=0.385 Sum_probs=13.0
Q ss_pred ChhHHHHHHHHHHHHhccC
Q 027457 1 MLNVIRIFLTLITLIGTAS 19 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (223)
|||+++.+++++.+.+.++
T Consensus 1 MKK~~~~~~~i~~l~~~s~ 19 (80)
T PF11106_consen 1 MKKIIYGLFAILALASSSA 19 (80)
T ss_pred ChhHHHHHHHHHHHHhcch
Confidence 8999987766665655543
No 56
>PRK11443 lipoprotein; Provisional
Probab=44.57 E-value=23 Score=27.00 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=12.6
Q ss_pred ChhHHHHHHHHHHHHhccCCC
Q 027457 1 MLNVIRIFLTLITLIGTASSQ 21 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~ 21 (223)
||+++.+++++ +|.+|++.+
T Consensus 1 Mk~~~~~~~~~-lLsgCa~~~ 20 (124)
T PRK11443 1 MKKFIAPLLAL-LLSGCQIDP 20 (124)
T ss_pred ChHHHHHHHHH-HHHhccCCC
Confidence 87665555444 577777754
No 57
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=42.96 E-value=47 Score=27.82 Aligned_cols=51 Identities=20% Similarity=0.228 Sum_probs=30.5
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCCCC--CCcEEEEEEe-------------ceeEEEEEcCCCChh
Q 027457 1 MLNVIRIFLTLITLIGTASSQEDPQL--GSARVVFQTN-------------YGDIEFGFYPSVAPQ 51 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~t~-------------~G~i~ieL~~~~aP~ 51 (223)
|+.+++++++++.+++.......-.. ....+.++.+ .+.+.|..|..+||.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~ 66 (224)
T PTZ00443 1 MKFIILACCILFGLIADEATNVKLDAEDANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSH 66 (224)
T ss_pred CchhHHHHHHHHHHHccccccccccccCCCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChH
Confidence 78877777776666555444331111 2333443321 367999999999995
No 58
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=42.78 E-value=74 Score=24.36 Aligned_cols=48 Identities=10% Similarity=0.318 Sum_probs=35.5
Q ss_pred cEEEEEEeceeEEEEEcCCCCh---------hhHHHHHHhhcCC-ccCCceEEEEecC
Q 027457 29 ARVVFQTNYGDIEFGFYPSVAP---------QTVDHIFKLVRLG-CYNTNHFFRVDKG 76 (223)
Q Consensus 29 ~~v~~~t~~G~i~ieL~~~~aP---------~t~~nF~~L~~~g-~Y~g~~f~ri~~~ 76 (223)
..++++|..|++.+..-.+.++ ++++.|++..+.- .-+.+.|+-++++
T Consensus 4 vNIfLEsd~grvkl~~~~~~~~c~~~~~~~~~Av~~Fl~~L~kyI~veeStFylvvrd 61 (130)
T PF06138_consen 4 VNIFLESDSGRVKLRYEEPDCKCARTGCEARRAVKHFLSVLKKYIDVEESTFYLVVRD 61 (130)
T ss_pred eEEEEeccCceeEEEEeCCCcccccccchHHHHHHHHHHHHHhhEEecccEEEEEEec
Confidence 4689999999988887754433 3678898887653 3467888888876
No 59
>PF13617 Lipoprotein_19: YnbE-like lipoprotein
Probab=42.14 E-value=56 Score=21.54 Aligned_cols=16 Identities=13% Similarity=0.337 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHhcc
Q 027457 3 NVIRIFLTLITLIGTA 18 (223)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (223)
.++.++++.+++.+|+
T Consensus 2 ~l~~~~~~~~~l~gCt 17 (59)
T PF13617_consen 2 PLLLLLALALALTGCT 17 (59)
T ss_pred hhHHHHHHHHHHccCC
Confidence 3455555555666665
No 60
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=41.96 E-value=26 Score=27.42 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=18.0
Q ss_pred ChhHHHHHHHHHHHHhccCCC
Q 027457 1 MLNVIRIFLTLITLIGTASSQ 21 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~ 21 (223)
|++++.++++++++.+|++..
T Consensus 1 mrk~~~~~~~al~LaGCaT~~ 21 (145)
T PRK13835 1 LRRLLAACILALLLSGCQTLA 21 (145)
T ss_pred ChhHHHHHHHHHHHhcccccC
Confidence 899999999888889998853
No 61
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=41.34 E-value=20 Score=23.88 Aligned_cols=20 Identities=10% Similarity=0.047 Sum_probs=14.4
Q ss_pred ChhHHHHHHHHHHHHhccCC
Q 027457 1 MLNVIRIFLTLITLIGTASS 20 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~ 20 (223)
||+++-+|+++++++..+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (92)
T TIGR02052 1 MKKLATLLALFVLTSLPAWA 20 (92)
T ss_pred ChhHHHHHHHHHHhcchhhh
Confidence 88888777777766655544
No 62
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=40.69 E-value=37 Score=21.77 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=13.3
Q ss_pred ChhHHHHHHH---HHHHHhccCCCCC
Q 027457 1 MLNVIRIFLT---LITLIGTASSQED 23 (223)
Q Consensus 1 m~~~~~~~~~---~~~~~~~~~~~~~ 23 (223)
|.+.+.++++ ++-+++|.++++.
T Consensus 1 mlk~lkf~lv~imlaqllsctpsapy 26 (60)
T PF10913_consen 1 MLKSLKFLLVLIMLAQLLSCTPSAPY 26 (60)
T ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCc
Confidence 5555555444 4455677777653
No 63
>PHA03001 putative virion core protein; Provisional
Probab=38.98 E-value=73 Score=24.41 Aligned_cols=48 Identities=15% Similarity=0.372 Sum_probs=34.9
Q ss_pred cEEEEEEeceeEEEEEcC--CCCh------hhHHHHHHhhcCC-ccCCceEEEEecC
Q 027457 29 ARVVFQTNYGDIEFGFYP--SVAP------QTVDHIFKLVRLG-CYNTNHFFRVDKG 76 (223)
Q Consensus 29 ~~v~~~t~~G~i~ieL~~--~~aP------~t~~nF~~L~~~g-~Y~g~~f~ri~~~ 76 (223)
..++++|..|++.+..-. ..+| +++++|++..... .-+.+.|+-++++
T Consensus 4 vNIfLEsd~grvkl~~~~~~~~~~~~~~~~ka~~~fl~~L~kYi~v~eStFylvvrd 60 (132)
T PHA03001 4 VNIFLETDAGRVKLAIENPDKVCATKAEMRKAINKFLELLKKYIHVDKSTFYLVVKD 60 (132)
T ss_pred eEEEEeccCCceEEEEcCCCccccccchHHHHHHHHHHHHHhhEEecccEEEEEEec
Confidence 468999999998776643 3444 4678998887553 3477888888876
No 64
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=38.29 E-value=57 Score=25.31 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=21.2
Q ss_pred ChhHHHHHHHHHHHH-hc--cCCCCCCCCCCcEEEEEEe
Q 027457 1 MLNVIRIFLTLITLI-GT--ASSQEDPQLGSARVVFQTN 36 (223)
Q Consensus 1 m~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~v~~~t~ 36 (223)
|+++++.++++++++ ++ +++.....++...+..++.
T Consensus 1 M~~~~~~~~~~~~~~~~~~~~a~~~~~kpGlWe~t~~~~ 39 (162)
T PF12276_consen 1 MKRRLLLALALALLALAAAAAAAAPDIKPGLWEVTTTTE 39 (162)
T ss_pred CchHHHHHHHHHHHHhhcccccccCCCCCcccEEEEEec
Confidence 787777766665543 22 2233445566667776666
No 65
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=34.42 E-value=42 Score=27.07 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=16.2
Q ss_pred ChhHHHHHHHHHHHHhccCC
Q 027457 1 MLNVIRIFLTLITLIGTASS 20 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~ 20 (223)
||.++.++++++++.+|+..
T Consensus 1 ~~~~~~~~~~~~~~~~c~~~ 20 (177)
T TIGR03516 1 MKHLIAVILLLLLLLGCKTP 20 (177)
T ss_pred CceeHHHHHHHHHHhhcCCC
Confidence 88888888888888888854
No 66
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=33.75 E-value=32 Score=31.66 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=20.4
Q ss_pred CCcEEEEEEcChHHHHHHhcCCCCCCCCCCCCccceEEEeeeee
Q 027457 146 QYAVFGKVTKGDETLRKLEGLPTRKEGIFVMPTERITIHSSYYY 189 (223)
Q Consensus 146 ~~~vFG~Vv~G~~vl~~I~~~~~~~~~~~~~P~~~i~I~~~~vl 189 (223)
+-|++|+=--|+.|.--+.. +..+ ...+.+.+.+...+
T Consensus 209 ~VTl~G~SAGa~sv~~~l~s-p~~~-----~LF~raI~~SGs~~ 246 (535)
T PF00135_consen 209 NVTLFGQSAGAASVSLLLLS-PSSK-----GLFHRAILQSGSAL 246 (535)
T ss_dssp EEEEEEETHHHHHHHHHHHG-GGGT-----TSBSEEEEES--TT
T ss_pred ceeeeeecccccccceeeec-cccc-----cccccccccccccc
Confidence 46788887667777655555 2211 24455555555443
No 67
>PRK10756 hypothetical protein; Provisional
Probab=33.49 E-value=95 Score=24.64 Aligned_cols=12 Identities=8% Similarity=-0.014 Sum_probs=8.8
Q ss_pred eceeEEEEEcCC
Q 027457 36 NYGDIEFGFYPS 47 (223)
Q Consensus 36 ~~G~i~ieL~~~ 47 (223)
+.-+|+||-|.|
T Consensus 36 ~d~kI~VeA~dD 47 (157)
T PRK10756 36 PDHKIVVEAFDD 47 (157)
T ss_pred CCCEEEEEEecC
Confidence 344599999886
No 68
>PRK11671 mltC murein transglycosylase C; Provisional
Probab=33.42 E-value=97 Score=28.01 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=16.7
Q ss_pred EEEEEEeceeEEEEEcCCCChh
Q 027457 30 RVVFQTNYGDIEFGFYPSVAPQ 51 (223)
Q Consensus 30 ~v~~~t~~G~i~ieL~~~~aP~ 51 (223)
+..++-..|.|+||.-....|+
T Consensus 75 r~~vdF~~g~i~vet~~~~~p~ 96 (359)
T PRK11671 75 RSHINFDDGTITIETIAGTNPA 96 (359)
T ss_pred eeeEecCCCeEEEEecCCcChH
Confidence 4446667999999988777774
No 69
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=32.00 E-value=76 Score=18.16 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=16.5
Q ss_pred HHHHHHHHhhhhhHHHHHHhhhccC
Q 027457 198 KERSVLKRRLTASVIEIERQRMKCF 222 (223)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (223)
.+++.|+++.|.=+..+++.|+-|.
T Consensus 8 sekeqLrrr~eqLK~kLeqlrnS~a 32 (32)
T PF02344_consen 8 SEKEQLRRRREQLKHKLEQLRNSCA 32 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4578888888888888888887663
No 70
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=31.10 E-value=1.1e+02 Score=22.19 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=29.0
Q ss_pred EEeeeeecCCcchhHHHHHHHHHhhhhhHHHHHHhhhc
Q 027457 183 IHSSYYYDTEMEICEKERSVLKRRLTASVIEIERQRMK 220 (223)
Q Consensus 183 I~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (223)
..-...+-+++|..+++..+++++++.....++.+-.|
T Consensus 63 rwwtvalcdefdmikee~~emkkdleaankrve~q~ek 100 (122)
T PF05325_consen 63 RWWTVALCDEFDMIKEETIEMKKDLEAANKRVESQAEK 100 (122)
T ss_pred eEEeeeechhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44444577889999999999999999887777666544
No 71
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=30.80 E-value=1.5e+02 Score=23.08 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCChhhH---HHHHHhhcCCccCCceEEEE
Q 027457 38 GDIEFGFYPSVAPQTV---DHIFKLVRLGCYNTNHFFRV 73 (223)
Q Consensus 38 G~i~ieL~~~~aP~t~---~nF~~L~~~g~Y~g~~f~ri 73 (223)
+.++|..|..+||... .-|.++++.-...+..|.+|
T Consensus 48 ~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~V 86 (152)
T cd02962 48 VTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKI 86 (152)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEE
Confidence 4689999999999432 24455554422234566665
No 72
>COG4314 NosL Predicted lipoprotein involved in nitrous oxide reduction [Energy production and conversion]
Probab=30.76 E-value=51 Score=26.25 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=10.9
Q ss_pred ChhHHHHHHHH-HHHHhccCC
Q 027457 1 MLNVIRIFLTL-ITLIGTASS 20 (223)
Q Consensus 1 m~~~~~~~~~~-~~~~~~~~~ 20 (223)
||++++..+++ +++++|.++
T Consensus 1 mkr~Lla~la~~~llAgC~~~ 21 (176)
T COG4314 1 MKRTLLAILAVTALLAGCRQA 21 (176)
T ss_pred CchhHHHHHHHHHHHHhcchh
Confidence 67666555554 444556553
No 73
>PRK09934 fimbrial-like adhesin protein SfmF; Provisional
Probab=29.85 E-value=35 Score=27.04 Aligned_cols=15 Identities=13% Similarity=-0.040 Sum_probs=9.0
Q ss_pred ChhHHHHHHHHHHHH
Q 027457 1 MLNVIRIFLTLITLI 15 (223)
Q Consensus 1 m~~~~~~~~~~~~~~ 15 (223)
|||+++..+.++++.
T Consensus 1 m~~~~~~~~~~~~~~ 15 (171)
T PRK09934 1 MRRVFFACFCGLLWS 15 (171)
T ss_pred ChhHHHHHHHHHhhC
Confidence 888876665444333
No 74
>PRK09810 entericidin A; Provisional
Probab=29.80 E-value=51 Score=20.10 Aligned_cols=10 Identities=30% Similarity=0.398 Sum_probs=6.0
Q ss_pred ChhHHHHHHH
Q 027457 1 MLNVIRIFLT 10 (223)
Q Consensus 1 m~~~~~~~~~ 10 (223)
||+++.++++
T Consensus 2 Mkk~~~l~~~ 11 (41)
T PRK09810 2 MKRLIVLVLL 11 (41)
T ss_pred hHHHHHHHHH
Confidence 6776665544
No 75
>COG3045 CreA Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.45 E-value=1.6e+02 Score=23.27 Aligned_cols=18 Identities=11% Similarity=-0.029 Sum_probs=10.7
Q ss_pred EEEEEEeceeEEEEEcCC
Q 027457 30 RVVFQTNYGDIEFGFYPS 47 (223)
Q Consensus 30 ~v~~~t~~G~i~ieL~~~ 47 (223)
+|+-.+-.-.|+||-|.|
T Consensus 32 tvf~~~G~D~IvveafdD 49 (165)
T COG3045 32 TVFDWLGNDHIVVEAFDD 49 (165)
T ss_pred eeEEEecCCcEEEEecCC
Confidence 333333333399998886
No 76
>PRK02710 plastocyanin; Provisional
Probab=28.18 E-value=1.1e+02 Score=22.71 Aligned_cols=13 Identities=15% Similarity=0.314 Sum_probs=5.8
Q ss_pred CcEEEEEEeceeE
Q 027457 28 SARVVFQTNYGDI 40 (223)
Q Consensus 28 ~~~v~~~t~~G~i 40 (223)
+..|.+.+.-|.+
T Consensus 30 ~~~V~~~~~~~~~ 42 (119)
T PRK02710 30 TVEVKMGSDAGML 42 (119)
T ss_pred eEEEEEccCCCee
Confidence 4455554443333
No 77
>PTZ00102 disulphide isomerase; Provisional
Probab=27.43 E-value=82 Score=28.78 Aligned_cols=16 Identities=13% Similarity=0.123 Sum_probs=12.4
Q ss_pred ceeEEEEEcCCCChhh
Q 027457 37 YGDIEFGFYPSVAPQT 52 (223)
Q Consensus 37 ~G~i~ieL~~~~aP~t 52 (223)
...+.|..|..+||..
T Consensus 49 ~~~~lv~f~a~wC~~C 64 (477)
T PTZ00102 49 NEIVLVKFYAPWCGHC 64 (477)
T ss_pred CCcEEEEEECCCCHHH
Confidence 3358889999999963
No 78
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.37 E-value=48 Score=24.54 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=10.4
Q ss_pred ChhHHHHHHHHHHHHh
Q 027457 1 MLNVIRIFLTLITLIG 16 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~ 16 (223)
||+++++++++++.++
T Consensus 1 MKk~~ll~~~ll~s~~ 16 (114)
T PF11777_consen 1 MKKIILLASLLLLSSS 16 (114)
T ss_pred CchHHHHHHHHHHHHH
Confidence 8988877755444433
No 79
>PF11873 DUF3393: Domain of unknown function (DUF3393); InterPro: IPR024570 Membrane-bound lytic murein transglycosylase C (also known as murein hydrolase C), is a murein-degrading enzyme that may play a role in the recycling of muropeptides during cell elongation and/or cell division. This entry represents the N-terminal domain, whose function is currently not known.
Probab=26.36 E-value=1.9e+02 Score=23.98 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=17.3
Q ss_pred EEEEEEeceeEEEEEcCCCChh
Q 027457 30 RVVFQTNYGDIEFGFYPSVAPQ 51 (223)
Q Consensus 30 ~v~~~t~~G~i~ieL~~~~aP~ 51 (223)
+..++-..|.|+||--....|+
T Consensus 89 Ra~VdFd~G~I~VETi~~~~p~ 110 (204)
T PF11873_consen 89 RAHVDFDKGTITVETIAQTDPK 110 (204)
T ss_pred EEEEEeeCCeEEEEecCCcCHH
Confidence 5556677899999988888884
No 80
>PF12099 DUF3575: Protein of unknown function (DUF3575); InterPro: IPR021958 This family of proteins are functionally uncharacterised. This family is only found in bacteria. Proteins in this family are typically between 187 to 236 amino acids in length.
Probab=26.06 E-value=74 Score=25.86 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=24.8
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCC------------CCCCcEEEEEEece-eEEEEEcCCCCh
Q 027457 1 MLNVIRIFLTLITLIGTASSQEDP------------QLGSARVVFQTNYG-DIEFGFYPSVAP 50 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~v~~~t~~G-~i~ieL~~~~aP 50 (223)
||+++.++++++++..+++..... ...++.+-++..+| +.+++|.....|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~q~~avKtN~l~~~~~tpNlg~E~~l~~~~Sl~l~~~yn~ 63 (189)
T PF12099_consen 1 MKKIRILFLLLLLFCSLSPSNARAQKVAVKTNLLYWATGTPNLGVEFALGNRWSLDLSGSYNP 63 (189)
T ss_pred CceehHHHHHHHHHHHhccccccceEEEEEeHHhHHHHhCCceEEEEEECCCEEEEEEEEECC
Confidence 888877776655444433111111 12344444444433 366666665556
No 81
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=25.53 E-value=77 Score=26.65 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=25.5
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEEeceeEEEEEcC
Q 027457 1 MLNVIRIFLTLITLIGTASSQEDPQLGSARVVFQTNYGDIEFGFYP 46 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~G~i~ieL~~ 46 (223)
|.|.++++++++++.+++.++- .....+|.+.-+.....+.|..
T Consensus 3 ~~~~~~~~~~~~~~~~~a~A~v--~l~~TRvIy~~~~~~~si~i~N 46 (229)
T PRK15211 3 MMKWGLVSLLSLAVCGQAMAAF--VLNGTRFIYDEGRKNISFEVTN 46 (229)
T ss_pred eeehHHHHHHHHHHhHHheEEE--EECceEEEEcCCCceEEEEEEe
Confidence 4466666666665555444332 2334567777666666666655
No 82
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=25.46 E-value=20 Score=22.13 Aligned_cols=13 Identities=38% Similarity=0.401 Sum_probs=7.3
Q ss_pred ChhHHHHHHHHHH
Q 027457 1 MLNVIRIFLTLIT 13 (223)
Q Consensus 1 m~~~~~~~~~~~~ 13 (223)
||+++.++++++.
T Consensus 1 MkKi~~~~i~~~~ 13 (46)
T PF02402_consen 1 MKKIIFIGIFLLT 13 (46)
T ss_pred CcEEEEeHHHHHH
Confidence 7776655444444
No 83
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=25.35 E-value=97 Score=20.70 Aligned_cols=28 Identities=32% Similarity=0.560 Sum_probs=21.1
Q ss_pred CCCCCcEEEEEEcChHHHHHHhcCCCCCCC
Q 027457 143 LDGQYAVFGKVTKGDETLRKLEGLPTRKEG 172 (223)
Q Consensus 143 ldg~~~vFG~Vv~G~~vl~~I~~~~~~~~~ 172 (223)
+|..-.++|+|++| -+.+|....++.++
T Consensus 16 ~d~~G~~vG~vveG--d~k~L~G~~vd~~G 43 (64)
T PF12396_consen 16 VDDDGNVVGRVVEG--DPKKLVGKKVDEDG 43 (64)
T ss_pred ECCCCCEEEEEecC--CHHHhcCCcCCCCC
Confidence 44556799999999 56677777777765
No 84
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=25.01 E-value=58 Score=25.07 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=15.0
Q ss_pred ChhHHHHHHHHHHHHhccCCC
Q 027457 1 MLNVIRIFLTLITLIGTASSQ 21 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~ 21 (223)
||+++.+++++++.++.+.+.
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~ 21 (131)
T PF11948_consen 1 MKRFLALFLSVLSAFSTALAA 21 (131)
T ss_pred CcchHHHHHHHHHHhcccccc
Confidence 899998888877765554443
No 85
>TIGR03780 Bac_Flav_CT_N Bacteroides conjugative transposon TraN protein. Members of this family are the TraN protein encoded by transfer region genes of conjugative transposons of Bacteroides. The family is related to conjugative transfer proteins VirB9 and TrbG of Agrobacterium Ti plasmids.
Probab=24.43 E-value=1.9e+02 Score=25.35 Aligned_cols=11 Identities=27% Similarity=0.431 Sum_probs=6.6
Q ss_pred ChhHHHHHHHH
Q 027457 1 MLNVIRIFLTL 11 (223)
Q Consensus 1 m~~~~~~~~~~ 11 (223)
||+++.+++++
T Consensus 1 mk~~~~~~~~~ 11 (285)
T TIGR03780 1 MKKIFGIMLAS 11 (285)
T ss_pred CcchHHHHHHH
Confidence 88888433333
No 86
>PF12052 VGCC_beta4Aa_N: Voltage gated calcium channel subunit beta domain 4Aa N terminal; InterPro: IPR000584 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. Co-expression of beta subunit mRNA with alpha-1 subunit mRNA in xenopus oocytes produces increased calcium currents, which are accompanied by a shift in the voltage-dependence of activation to more negative membrane potentials. Conversely, microinjection of antisense oligonucleotides to beta subunit mRNA produces decreased calcium currents and shifts voltage-dependent activation to more positive membrane potentials. There are four distinct beta subunits: beta-1, beta-2, beta-3 and beta-4; and the magnitude of the shift in the voltage-dependence of activation of change to membrane potentials varies with the particular subtype []. This entry represents the beta subunits found in L-type voltage-gated calcium channels.; GO: 0005245 voltage-gated calcium channel activity, 0006816 calcium ion transport, 0051925 regulation of calcium ion transport via voltage-gated calcium channel activity; PDB: 1T0J_A 1T0H_A 2D46_A 1T3S_A 1T3L_A 4DEY_A 4DEX_A 1VYT_B 1VYU_A.
Probab=24.35 E-value=72 Score=19.39 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhh-hhHHHHHHhhhc
Q 027457 197 EKERSVLKRRLT-ASVIEIERQRMK 220 (223)
Q Consensus 197 ~~~~~~~~~~~~-~~~~~~~~~~~~ 220 (223)
++..+.++++.+ ....|+++.|.|
T Consensus 18 dedrEalRre~erqA~~QLekAk~K 42 (42)
T PF12052_consen 18 DEDREALRREAERQALAQLEKAKTK 42 (42)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhcC
Confidence 344566777776 445667777654
No 87
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=24.10 E-value=1e+02 Score=25.81 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=22.9
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEEeceeEEEEEcC
Q 027457 1 MLNVIRIFLTLITLIGTASSQEDPQLGSARVVFQTNYGDIEFGFYP 46 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~G~i~ieL~~ 46 (223)
||.+.... ++++++++.++++.-.....+|.+.-......+.|..
T Consensus 1 ~~~~~~~~-~~~~~~~~~~a~agv~l~~TRvI~~~~~~~~si~i~N 45 (228)
T PRK15208 1 MRLISFTA-LALALIAQNSFAGGVALSSTRVIYDGSKKEASLTVNN 45 (228)
T ss_pred CchhHHHH-HHHHHHhhHhhhccEEeCceEEEEeCCCceEEEEEEe
Confidence 77752222 2222223333333333345577777777777777754
No 88
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=24.06 E-value=52 Score=29.67 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=32.7
Q ss_pred CCCccEEEEecCCCCCCCcceEEEEeCCCCCCCCCCcEEEEEE-cChHHHHHHh
Q 027457 112 KHVRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVT-KGDETLRKLE 164 (223)
Q Consensus 112 ~h~~G~lsma~~~~~~~~~sqFfItl~~~~~ldg~~~vFG~Vv-~G~~vl~~I~ 164 (223)
...+|.|.+.| ..-....-+.-|++.+.|. |++.-|+|+|. +-+..|+-|.
T Consensus 297 ~r~~G~ItIdN-~~ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~ 348 (357)
T PF05913_consen 297 ERKRGDITIDN-ENYGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIK 348 (357)
T ss_dssp -B-TTEEEEE--GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--
T ss_pred cccCceEEEeC-CCccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcC
Confidence 34899999998 4444455578999999885 88999999999 5788888874
No 89
>TIGR00548 lolB outer membrane lipoprotein LolB. This protein, LolB, is known so far only in the gamma and beta subdivisions of the Proteobacteria. It is a processed, lipid-modified outer membrane protein. It is required in E. coli for insertion of the major outer lipoprotein (Lpp) into the outer membrane. Lpp is transferred to LolB from the carrier protein LolA in the periplasm. Previously, this protein was thought to play in role in 5-aminolevulinic acid synthesis and was designated HemM.
Probab=23.71 E-value=66 Score=26.34 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=12.4
Q ss_pred ChhHHHHHHHHHHHHhccCC
Q 027457 1 MLNVIRIFLTLITLIGTASS 20 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~ 20 (223)
|++++++++++++|.+|++.
T Consensus 1 ~~~~~~~l~~~llLsgCa~~ 20 (202)
T TIGR00548 1 RFRLFLALSALALLTACAGL 20 (202)
T ss_pred CceeHHHHHHHHHHhhccCC
Confidence 35566666666667778643
No 90
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.50 E-value=61 Score=24.22 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=13.3
Q ss_pred ChhHHHHHHHHHHHHhcc
Q 027457 1 MLNVIRIFLTLITLIGTA 18 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~ 18 (223)
||+++.++++++++..++
T Consensus 1 MKkil~~ilall~~ii~a 18 (113)
T COG5294 1 MKKILIGILALLLIIIGA 18 (113)
T ss_pred CcchHHHHHHHHHHHHhh
Confidence 899998888877765443
No 91
>PRK09838 periplasmic copper-binding protein; Provisional
Probab=23.38 E-value=61 Score=24.29 Aligned_cols=19 Identities=5% Similarity=0.046 Sum_probs=12.5
Q ss_pred ChhHHHHHHHHHHHHhccC
Q 027457 1 MLNVIRIFLTLITLIGTAS 19 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (223)
||+++..+++.++++.+..
T Consensus 1 mk~~~~~~~~~~~~~~~~~ 19 (115)
T PRK09838 1 MKKALKVAMFSLFSVIGFN 19 (115)
T ss_pred CchHHHHHHHHHHHHHhhh
Confidence 7888877777666554444
No 92
>PF07437 YfaZ: YfaZ precursor; InterPro: IPR009998 This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.
Probab=22.97 E-value=1.2e+02 Score=24.61 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=11.9
Q ss_pred ChhHHHHHHHHHHHHhccC
Q 027457 1 MLNVIRIFLTLITLIGTAS 19 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (223)
|||+++..++++++++.++
T Consensus 1 m~k~~~a~~~~l~~~s~~a 19 (180)
T PF07437_consen 1 MKKFLLASAAALLLVSASA 19 (180)
T ss_pred CchHHHHHHHHHHHHhhhh
Confidence 8888877666555544433
No 93
>PRK10626 hypothetical protein; Provisional
Probab=22.19 E-value=1.9e+02 Score=24.58 Aligned_cols=16 Identities=13% Similarity=0.034 Sum_probs=9.1
Q ss_pred EEEEEEeceeEEEEEc
Q 027457 30 RVVFQTNYGDIEFGFY 45 (223)
Q Consensus 30 ~v~~~t~~G~i~ieL~ 45 (223)
.|.+....|+++|+-.
T Consensus 38 ~v~V~~~sg~l~I~~d 53 (239)
T PRK10626 38 TVQVVGASGNLVISPD 53 (239)
T ss_pred eEEEEecCCceEEcCC
Confidence 4455555666666544
No 94
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=20.99 E-value=1.1e+02 Score=18.06 Aligned_cols=6 Identities=17% Similarity=-0.097 Sum_probs=2.9
Q ss_pred ChhHHH
Q 027457 1 MLNVIR 6 (223)
Q Consensus 1 m~~~~~ 6 (223)
||-+-.
T Consensus 1 Mk~l~~ 6 (36)
T PF08194_consen 1 MKCLSL 6 (36)
T ss_pred CceeHH
Confidence 664433
No 95
>COG5645 Predicted periplasmic lipoprotein [General function prediction only]
Probab=20.87 E-value=60 Score=22.65 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=14.8
Q ss_pred ChhHHHHHHHHHHHHhccC
Q 027457 1 MLNVIRIFLTLITLIGTAS 19 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (223)
|++++..+.+++.+.+|++
T Consensus 1 mr~i~l~l~v~lllSGC~S 19 (80)
T COG5645 1 MRNILLSLMVLLLLSGCGS 19 (80)
T ss_pred CceehHHHHHHHHhCccce
Confidence 7888888888877777765
No 96
>PRK15240 resistance to complement killing; Provisional
Probab=20.63 E-value=96 Score=25.12 Aligned_cols=17 Identities=18% Similarity=-0.029 Sum_probs=11.3
Q ss_pred ChhHHHHHHHHHHHHhc
Q 027457 1 MLNVIRIFLTLITLIGT 17 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~ 17 (223)
|||++.+.++++++..+
T Consensus 1 Mkk~~~~~~~~~~~~~~ 17 (185)
T PRK15240 1 MKKIVLSSLLLSAAGLA 17 (185)
T ss_pred CchhHHHHHHHHHHHhc
Confidence 89888766665555444
No 97
>PF07197 DUF1409: Protein of unknown function (DUF1409); InterPro: IPR010811 This represents a short conserved region (approximately 50 residues long), sometimes repeated, within a number of hypothetical Oryza sativa proteins of unknown function.
Probab=20.60 E-value=47 Score=21.24 Aligned_cols=40 Identities=10% Similarity=0.084 Sum_probs=29.9
Q ss_pred EEeeeeecCCcchhHHHHHHHHHhhhhhHHHHHHhhhccC
Q 027457 183 IHSSYYYDTEMEICEKERSVLKRRLTASVIEIERQRMKCF 222 (223)
Q Consensus 183 I~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (223)
+++||-+...++.....++.-.+++..-...+|+.+-|.+
T Consensus 11 v~~cg~IrarleE~qa~i~~e~~~l~~~~~~lEq~~~KL~ 50 (51)
T PF07197_consen 11 VVDCGSIRARLEEIQAQIPDELAKLATPAVYLEQHQFKLE 50 (51)
T ss_pred HhccchHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHhc
Confidence 5678888777777777777777777777777888776653
No 98
>PRK12580 outer membrane protease; Reviewed
Probab=20.41 E-value=1.5e+02 Score=26.25 Aligned_cols=20 Identities=10% Similarity=0.190 Sum_probs=15.0
Q ss_pred CCCCCcEEEEEEeceeEEEE
Q 027457 24 PQLGSARVVFQTNYGDIEFG 43 (223)
Q Consensus 24 ~~~~~~~v~~~t~~G~i~ie 43 (223)
|.-....|.+.+++|.+..+
T Consensus 27 ~~f~~~~is~~~slG~L~gk 46 (312)
T PRK12580 27 PNISPDSFTVAASTGMLSGK 46 (312)
T ss_pred cccCccceeEEeeeeeeecc
Confidence 35556788899999988664
No 99
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=20.40 E-value=2.5e+02 Score=20.70 Aligned_cols=35 Identities=6% Similarity=0.134 Sum_probs=20.8
Q ss_pred eceeEEEEEcCCCChhhHHHHHHhhcCCccCCceEEEEe
Q 027457 36 NYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVD 74 (223)
Q Consensus 36 ~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~g~~f~ri~ 74 (223)
..|.|.+.. .-+|..+++=+.-- --=.|...|||+
T Consensus 50 ~iGtVSvs~--~gsp~d~~~~La~K--Ada~GA~yYrIi 84 (104)
T PRK14864 50 KMGTVSALV--RGSPDDAEREIQAK--ANAAGADYYVIV 84 (104)
T ss_pred eeeEEEEec--CCCHHHHHHHHHHH--HHHcCCCEEEEE
Confidence 588888874 55787776544331 112356667775
No 100
>PF06316 Ail_Lom: Enterobacterial Ail/Lom protein; InterPro: IPR000758 Virulence-related outer membrane proteins are expressed in Gram-negative bacteria and are essential to bacterial survival within macrophages and for eukaryotic cell invasion. Members of this group include: PagC, required by Salmonella typhimurium for survival in macrophages and for virulence in mice [] Rck outer membrane protein of the S. typhimurium virulence plasmid [] Ail, a product of the Yersinia enterocolitica chromosome capable of mediating bacterial adherence to and invasion of epithelial cell lines [] OmpX from Escherichia coli that promotes adhesion to and entry into mammalian cells. It also has a role in the resistance against attack by the human complement system [] a Bacteriophage lambda outer membrane protein, Lom [] The crystal structure of OmpX from E. coli reveals that OmpX consists of an eight-stranded antiparallel all-next-neighbour beta barrel []. The structure shows two girdles of aromatic amino acid residues and a ribbon of nonpolar residues that attach to the membrane interior. The core of the barrel consists of an extended hydrogen-bonding network of highly conserved residues. OmpX thus resembles an inverse micelle. The OmpX structure shows that the membrane-spanning part of the protein is much better conserved than the extracellular loops. Moreover, these loops form a protruding beta sheet, the edge of which presumably binds to external proteins. It is suggested that this type of binding promotes cell adhesion and invasion and helps defend against the complement system. Although OmpX has the same beta-sheet topology as the structurally related outer membrane protein A (OmpA) IPR000498 from INTERPRO, their barrels differ with respect to the shear numbers and internal hydrogen-bonding networks.; GO: 0009279 cell outer membrane
Probab=20.32 E-value=95 Score=25.65 Aligned_cols=15 Identities=20% Similarity=0.301 Sum_probs=10.5
Q ss_pred ChhHHHHHHHHHHHH
Q 027457 1 MLNVIRIFLTLITLI 15 (223)
Q Consensus 1 m~~~~~~~~~~~~~~ 15 (223)
||++...+++++++.
T Consensus 1 mr~~~~~ils~~~~l 15 (199)
T PF06316_consen 1 MRKLCAAILSAAVLL 15 (199)
T ss_pred ChhHHHHHHHHHHHH
Confidence 888888877655443
No 101
>PRK10386 curli assembly protein CsgE; Provisional
Probab=20.28 E-value=1.6e+02 Score=22.68 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=11.3
Q ss_pred ChhHHHHHHHHHHHHhcc
Q 027457 1 MLNVIRIFLTLITLIGTA 18 (223)
Q Consensus 1 m~~~~~~~~~~~~~~~~~ 18 (223)
||++.+.+++.++++.+.
T Consensus 1 ~~r~~~~~l~~~~l~~~~ 18 (130)
T PRK10386 1 MKRYLRWIVAAELLFAAG 18 (130)
T ss_pred ChhHHHHHHHHHHHHhCc
Confidence 888886666655554444
No 102
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=20.23 E-value=91 Score=19.95 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=21.0
Q ss_pred EcChHHHHHHhcCCCCCCCCCCCCccceEEEee
Q 027457 154 TKGDETLRKLEGLPTRKEGIFVMPTERITIHSS 186 (223)
Q Consensus 154 v~G~~vl~~I~~~~~~~~~~~~~P~~~i~I~~~ 186 (223)
++|.+|++++.+. .. .. ...-||..++.
T Consensus 4 ~sGv~vlRel~r~-~~-~~---~~~~PVVFTS~ 31 (58)
T PF08415_consen 4 FSGVEVLRELARR-GG-GR---AAVMPVVFTSM 31 (58)
T ss_pred ccHHHHHHHHHHh-cC-CC---CCcCCEEEeCC
Confidence 3799999999998 32 22 56778888875
No 103
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=20.02 E-value=76 Score=20.02 Aligned_cols=10 Identities=10% Similarity=0.248 Sum_probs=5.7
Q ss_pred ChhHHHHHHH
Q 027457 1 MLNVIRIFLT 10 (223)
Q Consensus 1 m~~~~~~~~~ 10 (223)
||+++.++++
T Consensus 2 mKk~i~~i~~ 11 (48)
T PRK10081 2 VKKTIAAIFS 11 (48)
T ss_pred hHHHHHHHHH
Confidence 6776655443
Done!