Query 027458
Match_columns 223
No_of_seqs 221 out of 962
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 10:12:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027458.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027458hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00187 photosystem II light- 100.0 1.2E-39 2.5E-44 294.2 11.3 158 15-205 6-206 (286)
2 PLN00025 photosystem II light 100.0 5.9E-37 1.3E-41 274.0 12.0 130 72-205 43-175 (262)
3 PLN00171 photosystem light-ha 100.0 1E-34 2.2E-39 265.5 10.0 134 69-205 97-235 (324)
4 PLN00098 light-harvesting comp 100.0 2.5E-33 5.5E-38 251.2 10.4 115 72-205 54-168 (267)
5 PLN00101 Photosystem I light-h 100.0 6.4E-33 1.4E-37 246.7 11.0 114 73-205 46-159 (250)
6 PLN00097 photosystem I light h 100.0 2E-32 4.3E-37 242.8 9.1 111 77-205 41-151 (244)
7 PLN00048 photosystem I light h 100.0 4.3E-32 9.3E-37 242.8 9.6 119 75-205 37-162 (262)
8 PLN00170 photosystem II light- 100.0 2.8E-30 6.1E-35 230.3 10.7 111 78-205 49-160 (255)
9 PLN00099 light-harvesting comp 100.0 1.5E-29 3.4E-34 224.3 9.1 114 78-204 42-157 (243)
10 PLN00147 light-harvesting comp 100.0 1.8E-29 3.9E-34 224.9 9.5 112 75-204 40-151 (252)
11 PLN00100 light-harvesting comp 100.0 9.5E-29 2.1E-33 219.5 8.7 103 78-205 33-135 (246)
12 PF00504 Chloroa_b-bind: Chlor 99.8 1.3E-20 2.8E-25 154.5 8.3 96 94-205 1-98 (156)
13 PLN00089 fucoxanthin-chlorophy 99.7 6.7E-18 1.5E-22 147.2 7.2 57 95-152 47-104 (209)
14 PLN00147 light-harvesting comp 99.6 1.2E-15 2.7E-20 136.4 4.7 59 95-153 172-230 (252)
15 PLN00089 fucoxanthin-chlorophy 99.6 2.6E-15 5.6E-20 131.1 4.9 54 100-153 153-207 (209)
16 PLN00048 photosystem I light h 99.5 4.6E-15 1E-19 133.4 3.6 54 100-153 187-240 (262)
17 PLN00025 photosystem II light 99.5 2.4E-14 5.1E-19 128.8 4.2 54 99-153 183-236 (262)
18 PLN00187 photosystem II light- 99.4 4.6E-14 1E-18 128.2 4.3 54 100-153 212-265 (286)
19 PLN00099 light-harvesting comp 99.4 9.1E-14 2E-18 123.9 4.2 53 100-153 164-217 (243)
20 PLN00098 light-harvesting comp 99.4 1.2E-13 2.6E-18 124.6 4.4 54 100-153 191-245 (267)
21 PLN00120 fucoxanthin-chlorophy 99.4 3.3E-13 7.2E-18 117.3 6.9 39 108-146 47-87 (202)
22 PF00504 Chloroa_b-bind: Chlor 99.4 2.5E-13 5.4E-18 111.5 4.1 50 97-146 107-156 (156)
23 PLN00171 photosystem light-ha 99.4 4.8E-13 1E-17 123.3 4.6 52 102-153 252-303 (324)
24 PLN00097 photosystem I light h 99.3 7.2E-13 1.6E-17 118.2 4.3 53 101-153 170-227 (244)
25 PLN00120 fucoxanthin-chlorophy 99.3 4.2E-12 9.2E-17 110.4 4.6 51 100-150 142-195 (202)
26 PLN00100 light-harvesting comp 99.3 2.6E-12 5.7E-17 114.8 3.4 48 101-153 143-190 (246)
27 PLN00101 Photosystem I light-h 99.2 1.3E-11 2.8E-16 110.5 3.3 47 102-153 184-230 (250)
28 PLN00170 photosystem II light- 99.2 1.9E-11 4.2E-16 109.7 4.0 51 102-153 191-250 (255)
29 PHA02337 putative high light i 97.9 8E-06 1.7E-10 53.4 2.1 29 124-152 3-31 (35)
30 PLN00014 light-harvesting-like 97.2 0.0001 2.2E-09 66.1 0.7 31 123-153 159-189 (250)
31 PLN00084 photosystem II subuni 95.7 0.0045 9.8E-08 53.8 1.4 34 120-153 132-166 (214)
No 1
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=1.2e-39 Score=294.22 Aligned_cols=158 Identities=30% Similarity=0.595 Sum_probs=127.0
Q ss_pred cchhhcCCccccccccccCCCCCCCCCCCceeEecccCCCCCCCCCCCCcCCCchhhhhhhhcCCCccccCcCccCCCCC
Q 027458 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEI 94 (223)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~f~~~~~~~~~~~k~~~~~~~~~~~~~w~g~~R~~~lp~g~~~~~~~ 94 (223)
..|.|+|.++.. +.++..+++++|+.++...++ ++++ +..++|+++|++|||+ .++
T Consensus 6 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~r~~w~p~-----~~~ 61 (286)
T PLN00187 6 AASSFMGTRVPD-----------VASNSGRIVARFGFGKKKKAA-KKAK-------KKSSKVGADRPLWFPG-----AKA 61 (286)
T ss_pred cchhhhhhhhcc-----------cccCccchhhhhccCcccccC-Cccc-------cCccCCCCCccccCCC-----CCC
Confidence 347788888742 344678888988743221111 1111 1236789999999997 899
Q ss_pred CCCCCCCCCCCCcCCCCCCCCChhh-------------------------------------------HHHHHHHHhhhc
Q 027458 95 PEYLTGEVPGDYGYDPFGLSKKPDD-------------------------------------------FSKYQAYELIHA 131 (223)
Q Consensus 95 p~yL~G~~PGD~GfDPlgL~~~pe~-------------------------------------------~~~~r~~EL~hG 131 (223)
|+||||++||||||||+||+++||. ++|||++||+||
T Consensus 62 P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHG 141 (286)
T PLN00187 62 PEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHG 141 (286)
T ss_pred cccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhh
Confidence 9999999999999999999999986 599999999999
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCCCCcccccccccccCCCccccCCCCchhhHHHHHHHHHHHHhhhhheeccC
Q 027458 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205 (223)
Q Consensus 132 R~AMLgv~G~lv~e~l~~~G~~~~p~~~Wf~AG~~~~~g~~l~Ylg~~~p~~l~~li~~evlLmG~~E~~R~~~ 205 (223)
||||||++||+++|+++ +..||++|.+.+.++ .+|++.+.++.+.+++++|+++||++|.+|+.+
T Consensus 142 RwAMLAvaG~lvpEll~--------G~~W~~aG~~~~~~g-~~y~g~~~p~~~~~l~~iqvllmG~~E~~R~~~ 206 (286)
T PLN00187 142 RWAMLATLGALSVEALT--------GVTWQDAGKVELVDG-SSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAE 206 (286)
T ss_pred HHHHHHhhchhhHHhcc--------CCccccccccccccc-ccccccccchhHHHHHHHHHHHHHHHHhhhccC
Confidence 99999999999999985 246999998765443 469999888887888899999999999999875
No 2
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=5.9e-37 Score=273.97 Aligned_cols=130 Identities=45% Similarity=0.889 Sum_probs=114.4
Q ss_pred hhhhhcCCCccccCcCccCCCCCCCCCCCCCCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCC
Q 027458 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (223)
Q Consensus 72 ~~~w~g~~R~~~lp~g~~~~~~~p~yL~G~~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G 151 (223)
.+.|||+||++||| ++. .++|+||||++||||||||+||++||++++|||++||+||||||||++||+++|++++.|
T Consensus 43 ~~~~~g~~R~~~l~--p~~-~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g 119 (262)
T PLN00025 43 GSIWYGPDRPKYLG--PFS-GETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 119 (262)
T ss_pred cccccCCCCccccC--Ccc-cCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence 46799999999993 444 589999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCCcccccccccccCCCccccCCCCchh---hHHHHHHHHHHHHhhhhheeccC
Q 027458 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITN 205 (223)
Q Consensus 152 ~~~~p~~~Wf~AG~~~~~g~~l~Ylg~~~p~---~l~~li~~evlLmG~~E~~R~~~ 205 (223)
+... +.+||++|+.++.+++++|++++..+ .+.+++++|+++||++|.+|+.+
T Consensus 120 ~~~~-~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~ 175 (262)
T PLN00025 120 VKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNG 175 (262)
T ss_pred cCcC-cccccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccC
Confidence 6543 56899999988887889999988654 34566788999999999999876
No 3
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=1e-34 Score=265.49 Aligned_cols=134 Identities=41% Similarity=0.782 Sum_probs=115.6
Q ss_pred hhhhhhhhcCCCccccCcCccCCCCCCCCCCCCCCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhc
Q 027458 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148 (223)
Q Consensus 69 ~~~~~~w~g~~R~~~lp~g~~~~~~~p~yL~G~~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~ 148 (223)
+++.+.|||++|++|||+ ++ .++|+||||++||||||||+||++|+++++|||++||+||||||||++|++++|+++
T Consensus 97 ~~~~~~~~g~~R~~wl~~--~~-~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~ 173 (324)
T PLN00171 97 ARNESFWYGEERPRWLGP--IP-YDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLD 173 (324)
T ss_pred hcccCcccCCCCccccCC--CC-CCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhc
Confidence 566789999999999964 22 379999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcccccccccccCCCccccCCCCch-----hhHHHHHHHHHHHHhhhhheeccC
Q 027458 149 KFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-----INLVFAVIAEIVLVGGAEYYRITN 205 (223)
Q Consensus 149 ~~G~~~~p~~~Wf~AG~~~~~g~~l~Ylg~~~p-----~~l~~li~~evlLmG~~E~~R~~~ 205 (223)
+.|....++++||++|...+++..++|++.+.. ..+..+.++|+++|+++|++|+.+
T Consensus 174 ~~g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~ 235 (324)
T PLN00171 174 LFGAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCG 235 (324)
T ss_pred cCCccccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeecc
Confidence 887654456789999988777777889887642 134456688999999999999875
No 4
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=2.5e-33 Score=251.22 Aligned_cols=115 Identities=37% Similarity=0.778 Sum_probs=101.9
Q ss_pred hhhhhcCCCccccCcCccCCCCCCCCCCCCCCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCC
Q 027458 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (223)
Q Consensus 72 ~~~w~g~~R~~~lp~g~~~~~~~p~yL~G~~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G 151 (223)
.+.+|+++|++|+|+ .++|+||||++||||||||+||++|++++++||++||+||||||||++|+++||++++.|
T Consensus 54 ~~~~~~~~r~~w~Pg-----~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g 128 (267)
T PLN00098 54 VCEPLPPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLG 128 (267)
T ss_pred ccccCCCCccccCCC-----CCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 466799999999997 889999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCCcccccccccccCCCccccCCCCchhhHHHHHHHHHHHHhhhhheeccC
Q 027458 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205 (223)
Q Consensus 152 ~~~~p~~~Wf~AG~~~~~g~~l~Ylg~~~p~~l~~li~~evlLmG~~E~~R~~~ 205 (223)
++. +..||++|+. +|++++. +++++|+++||++|++||++
T Consensus 129 ~~~--~~~w~~Ag~~-------~~~~~~~-----~l~~~q~~lmG~~E~~R~~~ 168 (267)
T PLN00098 129 FIE--NFSWYDAGAR-------EYFADPT-----TLFVVQMVLMGWAEGRRWAD 168 (267)
T ss_pred ccc--ccccccccch-------hhccCch-----HHHHHHHHHHHHHHHHHhhc
Confidence 754 3579999864 5777652 35678999999999999765
No 5
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=6.4e-33 Score=246.66 Aligned_cols=114 Identities=33% Similarity=0.706 Sum_probs=100.9
Q ss_pred hhhhcCCCccccCcCccCCCCCCCCCCCCCCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCCC
Q 027458 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152 (223)
Q Consensus 73 ~~w~g~~R~~~lp~g~~~~~~~p~yL~G~~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G~ 152 (223)
+.+++++|++|+|+ .++|+||||++||||||||+||++|++++++||++||+||||||||++|+++||++++.|+
T Consensus 46 ~~~~~~~r~~W~P~-----~~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~ 120 (250)
T PLN00101 46 SFKVEAKKGEWLPG-----LASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120 (250)
T ss_pred cccccccccccCCC-----CCCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCC
Confidence 35566899999996 7899999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCcccccccccccCCCccccCCCCchhhHHHHHHHHHHHHhhhhheeccC
Q 027458 153 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205 (223)
Q Consensus 153 ~~~p~~~Wf~AG~~~~~g~~l~Ylg~~~p~~l~~li~~evlLmG~~E~~R~~~ 205 (223)
++. +.||++|+. +|++.+ .+++++|+++||++|++|+++
T Consensus 121 ~~~--p~w~~ag~~-------~~~~~~-----~~l~~ie~~~mg~~E~~R~~~ 159 (250)
T PLN00101 121 INA--PQWYDAGKA-------EYFASS-----STLFVIEFILFHYVEIRRWQD 159 (250)
T ss_pred cCC--Cccccccch-------hhcccc-----hHHHHHHHHHHHHHHHHHhhc
Confidence 754 479999864 466654 346778999999999999875
No 6
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.97 E-value=2e-32 Score=242.77 Aligned_cols=111 Identities=32% Similarity=0.584 Sum_probs=97.2
Q ss_pred cCCCccccCcCccCCCCCCCCCCCCCCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCCCCCCC
Q 027458 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156 (223)
Q Consensus 77 g~~R~~~lp~g~~~~~~~p~yL~G~~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G~~~~p 156 (223)
+++|++|||+ .++|+||||++||||||||+||++|++++++||++||+||||||||++||++||++++.|+..
T Consensus 41 ~~~R~~w~Pg-----~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~-- 113 (244)
T PLN00097 41 AADRPTWLPG-----KAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMAD-- 113 (244)
T ss_pred CCCCcccCCC-----CCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCccc--
Confidence 3699999996 789999999999999999999999999999999999999999999999999999999888754
Q ss_pred CcccccccccccCCCccccCCCCchhhHHHHHHHHHHHHhhhhheeccC
Q 027458 157 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205 (223)
Q Consensus 157 ~~~Wf~AG~~~~~g~~l~Ylg~~~p~~l~~li~~evlLmG~~E~~R~~~ 205 (223)
.++||++|+.. .|+... .+++++|+++||++|.+|+++
T Consensus 114 ~p~W~~Ag~~~------~~~~~~-----~~l~~i~~~lmg~~E~~r~~~ 151 (244)
T PLN00097 114 LPNWIDAAKWD------GYWAGA-----GPLFFIQMAMFNWAEIRRWQD 151 (244)
T ss_pred CCccccCCcch------hccccc-----hhHHHHHHHHHHHHHHHHhhc
Confidence 35799998752 255432 346778999999999999875
No 7
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.97 E-value=4.3e-32 Score=242.79 Aligned_cols=119 Identities=35% Similarity=0.636 Sum_probs=100.1
Q ss_pred hhcCCCccccCcCccCCCCCCCCCCCCCCCCCcCCCCCCCCChh------hHHHHHHHHhhhchhhhhhhhhhhhhhhhc
Q 027458 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------DFSKYQAYELIHARWAMLGAAGFIIPEAFN 148 (223)
Q Consensus 75 w~g~~R~~~lp~g~~~~~~~p~yL~G~~PGD~GfDPlgL~~~pe------~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~ 148 (223)
+|+++|++|+|+ .++|+||||++||||||||+||+ +|+ +.+++|++||+||||||||++||++||+++
T Consensus 37 ~~~~~r~~w~p~-----~~~P~yLdG~lPGD~GFDPlGL~-~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~ 110 (262)
T PLN00048 37 KQGADRQLWFAS-----KQSLSYLDGTLPGDFGFDPLGLS-DPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILG 110 (262)
T ss_pred CCCCCCceecCC-----CCCccccCCCCCCccCCCccccC-CccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhc
Confidence 345799999996 89999999999999999999997 443 568899999999999999999999999999
Q ss_pred cCCCCCCC-CcccccccccccCCCccccCCCCchhhHHHHHHHHHHHHhhhhheeccC
Q 027458 149 KFGANCGP-EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205 (223)
Q Consensus 149 ~~G~~~~p-~~~Wf~AG~~~~~g~~l~Ylg~~~p~~l~~li~~evlLmG~~E~~R~~~ 205 (223)
+.|++... ...||++|++. ..+..+|++++. +++++|+++||++|.+|+++
T Consensus 111 ~~g~~~~~~~~~w~~ag~~~-~~~~~~y~~~p~-----~l~~~~~~lmg~~E~~R~~~ 162 (262)
T PLN00048 111 KAGLIPQETALPWFQSGVIP-PAGTYDYWADPY-----TLFVLEMALMGFAEHRRAQD 162 (262)
T ss_pred cCCccccccccccccccccc-cccccccccchh-----HHHHHHHHHhhheeeecccc
Confidence 88876422 34699999853 344578988852 45788999999999999886
No 8
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.96 E-value=2.8e-30 Score=230.26 Aligned_cols=111 Identities=32% Similarity=0.615 Sum_probs=91.8
Q ss_pred CCCccccCcC-ccCCCCCCCCCCCCCCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCCCCCCC
Q 027458 78 PDRRIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156 (223)
Q Consensus 78 ~~R~~~lp~g-~~~~~~~p~yL~G~~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G~~~~p 156 (223)
++|+.|+|+- +-+...+|+||||++||||||||++|++|+|++++||++||+||||||||++||+++|++++
T Consensus 49 ~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g------- 121 (255)
T PLN00170 49 QPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG------- 121 (255)
T ss_pred CCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccC-------
Confidence 4778899851 00123579999999999999999999999999999999999999999999999999999862
Q ss_pred CcccccccccccCCCccccCCCCchhhHHHHHHHHHHHHhhhhheeccC
Q 027458 157 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205 (223)
Q Consensus 157 ~~~Wf~AG~~~~~g~~l~Ylg~~~p~~l~~li~~evlLmG~~E~~R~~~ 205 (223)
..||++|+.. .++ .|+++.+++++|+++||++|.+||++
T Consensus 122 -~~w~~aG~~~------~~~---~p~~~~~l~~~q~~lmg~~E~~R~~~ 160 (255)
T PLN00170 122 -IPWFEAGADP------GAI---APFSFGSLLGTQLLLMGWVESKRWVD 160 (255)
T ss_pred -CChhhCCccc------ccc---CccchHHHHHHHHHHhhhhhheeecc
Confidence 4699998752 122 13345678889999999999999976
No 9
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.96 E-value=1.5e-29 Score=224.29 Aligned_cols=114 Identities=32% Similarity=0.688 Sum_probs=98.6
Q ss_pred CCCccccCcCccCCCCCCCCCCCCCCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCCCCCCCC
Q 027458 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157 (223)
Q Consensus 78 ~~R~~~lp~g~~~~~~~p~yL~G~~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G~~~~p~ 157 (223)
.+|..|+|+ ..+|+||||++||||||||++|+++++++++||++||+||||||||++|++++|+++.
T Consensus 42 ~~~~~w~P~-----~~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~-------- 108 (243)
T PLN00099 42 TMSADWMPG-----QPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL-------- 108 (243)
T ss_pred cccccccCC-----CCCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc--------
Confidence 478899996 7899999999999999999999999999999999999999999999999999999762
Q ss_pred ccccccccc-ccCCCccccCCCCchh-hHHHHHHHHHHHHhhhhheecc
Q 027458 158 AVWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRIT 204 (223)
Q Consensus 158 ~~Wf~AG~~-~~~g~~l~Ylg~~~p~-~l~~li~~evlLmG~~E~~R~~ 204 (223)
..||++++. ...++..+|++++.++ .+.+++++|+++||++|.+|+.
T Consensus 109 ~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~r~~ 157 (243)
T PLN00099 109 GNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSM 157 (243)
T ss_pred CCcccccchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHHhhc
Confidence 258888763 3455567899888766 3566778999999999998864
No 10
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.96 E-value=1.8e-29 Score=224.87 Aligned_cols=112 Identities=31% Similarity=0.626 Sum_probs=95.2
Q ss_pred hhcCCCccccCcCccCCCCCCCCCCCCCCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCCCCC
Q 027458 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154 (223)
Q Consensus 75 w~g~~R~~~lp~g~~~~~~~p~yL~G~~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G~~~ 154 (223)
.++++|++|+|+ .++|+||||++||||||||+||++|++++++||++||+||||||||++|+++||+++..|...
T Consensus 40 ~~~~~R~~wlP~-----~~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~~ 114 (252)
T PLN00147 40 VVAQERPTWLPG-----LDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRN 114 (252)
T ss_pred cCCCCccccCCC-----CCCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCcC
Confidence 445799999996 789999999999999999999999999999999999999999999999999999998877654
Q ss_pred CCCcccccccccccCCCccccCCCCchhhHHHHHHHHHHHHhhhhheecc
Q 027458 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT 204 (223)
Q Consensus 155 ~p~~~Wf~AG~~~~~g~~l~Ylg~~~p~~l~~li~~evlLmG~~E~~R~~ 204 (223)
. +.||++|...+ .+..+ .+++++|+++||++|.+|+.
T Consensus 115 ~--p~w~~ag~~~~------~~~~~-----~~~~~~q~~~mG~~E~~R~~ 151 (252)
T PLN00147 115 L--PVWYEAGAVKF------EFAST-----RTLFVVQLLLMGFAETKRYM 151 (252)
T ss_pred C--cchhhcccchh------ccccc-----hHHHHHHHHHHHHHHHHhhc
Confidence 3 57999876432 12222 34667899999999999864
No 11
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.95 E-value=9.5e-29 Score=219.47 Aligned_cols=103 Identities=31% Similarity=0.598 Sum_probs=89.2
Q ss_pred CCCccccCcCccCCCCCCCCCCCCCCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCCCCCCCC
Q 027458 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157 (223)
Q Consensus 78 ~~R~~~lp~g~~~~~~~p~yL~G~~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G~~~~p~ 157 (223)
.+|++|+|+ .++|+||||++||||||||+||++++++++++|++||+||||||||++|++++|+++ .
T Consensus 33 ~~r~~W~P~-----~~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~--------~ 99 (246)
T PLN00100 33 RARPMWYPG-----ATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG--------L 99 (246)
T ss_pred CCCcccCCC-----CCCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc--------c
Confidence 589999996 889999999999999999999999999999999999999999999999999999975 2
Q ss_pred cccccccccccCCCccccCCCCchhhHHHHHHHHHHHHhhhhheeccC
Q 027458 158 AVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205 (223)
Q Consensus 158 ~~Wf~AG~~~~~g~~l~Ylg~~~p~~l~~li~~evlLmG~~E~~R~~~ 205 (223)
+.||++|... |..+ ..+++++|+++||++|.+|+++
T Consensus 100 P~w~~ag~~~-------~~~~-----~~~l~~iqill~g~~E~~r~~~ 135 (246)
T PLN00100 100 PKFWEAGAEK-------YGLD-----LQTLVLIQVVVMAVLEAARYRG 135 (246)
T ss_pred cchhhcchhh-------hccc-----hhHHHHHHHHHHHHHhhhcccc
Confidence 3599987642 3221 2456678999999999999875
No 12
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.83 E-value=1.3e-20 Score=154.52 Aligned_cols=96 Identities=38% Similarity=0.672 Sum_probs=70.8
Q ss_pred CCCCCCCCCCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCCCCC--CCCcccccccccccCCC
Q 027458 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC--GPEAVWFKTGALLLDGN 171 (223)
Q Consensus 94 ~p~yL~G~~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G~~~--~p~~~Wf~AG~~~~~g~ 171 (223)
+|+||||+++|||||||+||++++ +++++|+.||+|||+||||++|++++|++++.+... ...+.|++++.
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~------ 73 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG------ 73 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS------
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhh------
Confidence 589999999999999999999887 999999999999999999999999999998754321 11234766431
Q ss_pred ccccCCCCchhhHHHHHHHHHHHHhhhhheeccC
Q 027458 172 TLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205 (223)
Q Consensus 172 ~l~Ylg~~~p~~l~~li~~evlLmG~~E~~R~~~ 205 (223)
+ +.+ ...++..++++|.+|.+|..+
T Consensus 74 ----~--~~~---~~~~~~~l~~ig~~e~~~~~~ 98 (156)
T PF00504_consen 74 ----I--PVP---AAGWAQILLFIGALEPWRQQG 98 (156)
T ss_dssp ----S--SSH---SHHHHHHHHHHHHHHHHHHHH
T ss_pred ----h--hhh---hHHHHHHHHHHhHhhhhhccc
Confidence 1 111 112234567888888876654
No 13
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.72 E-value=6.7e-18 Score=147.21 Aligned_cols=57 Identities=33% Similarity=0.546 Sum_probs=50.9
Q ss_pred CCCCCCCCCCCCcCCCCCCCC-ChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCCC
Q 027458 95 PEYLTGEVPGDYGYDPFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152 (223)
Q Consensus 95 p~yL~G~~PGD~GfDPlgL~~-~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G~ 152 (223)
|.-|+|. .||++|||+||++ ++|+++|+|++||+|||+||||++|+++||.++..|.
T Consensus 47 ~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~ 104 (209)
T PLN00089 47 EFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGE 104 (209)
T ss_pred CccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCc
Confidence 4468898 9999999999985 6788999999999999999999999999999876553
No 14
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.58 E-value=1.2e-15 Score=136.41 Aligned_cols=59 Identities=25% Similarity=0.443 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCCCC
Q 027458 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (223)
Q Consensus 95 p~yL~G~~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G~~ 153 (223)
+..+++.+|||++|||+||++|++++++++++||+||||||+|++|+++|+++++.|++
T Consensus 172 ~~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~ 230 (252)
T PLN00147 172 LEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPI 230 (252)
T ss_pred ccccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChH
Confidence 34556679999999999999999999999999999999999999999999999998865
No 15
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.56 E-value=2.6e-15 Score=131.07 Aligned_cols=54 Identities=30% Similarity=0.496 Sum_probs=49.9
Q ss_pred CCCCCCCcCCCCCCC-CChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCCCC
Q 027458 100 GEVPGDYGYDPFGLS-KKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (223)
Q Consensus 100 G~~PGD~GfDPlgL~-~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G~~ 153 (223)
++.||||||||+||. +|+++++++|.+||+||||||+|++|+++||++++.|+.
T Consensus 153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~ 207 (209)
T PLN00089 153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFP 207 (209)
T ss_pred CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence 478999999999994 689999999999999999999999999999999987753
No 16
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.52 E-value=4.6e-15 Score=133.37 Aligned_cols=54 Identities=24% Similarity=0.442 Sum_probs=51.2
Q ss_pred CCCCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCCCC
Q 027458 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (223)
Q Consensus 100 G~~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G~~ 153 (223)
..+|||++|||+||++|+|+++++|++||+||||||+|++||++|+++++.|++
T Consensus 187 ~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~ 240 (262)
T PLN00048 187 PAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPF 240 (262)
T ss_pred cccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHH
Confidence 359999999999999999999999999999999999999999999999998865
No 17
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.47 E-value=2.4e-14 Score=128.80 Aligned_cols=54 Identities=30% Similarity=0.575 Sum_probs=51.1
Q ss_pred CCCCCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCCCC
Q 027458 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (223)
Q Consensus 99 ~G~~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G~~ 153 (223)
|..+|||+ |||+||++|+++++++|.+||+||||||++++|+++|+++|+.|++
T Consensus 183 d~~yPG~~-FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPl 236 (262)
T PLN00025 183 DPLYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 236 (262)
T ss_pred cCcCCccc-CCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChH
Confidence 45799999 9999999999999999999999999999999999999999998875
No 18
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.45 E-value=4.6e-14 Score=128.24 Aligned_cols=54 Identities=33% Similarity=0.485 Sum_probs=51.0
Q ss_pred CCCCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCCCC
Q 027458 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (223)
Q Consensus 100 G~~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G~~ 153 (223)
..+|||++|||+||++|+++++++|++||+||||||+|++||++|+.+++.|++
T Consensus 212 ~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi 265 (286)
T PLN00187 212 RLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 265 (286)
T ss_pred CCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChH
Confidence 358999999999999999999999999999999999999999999999998875
No 19
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.42 E-value=9.1e-14 Score=123.87 Aligned_cols=53 Identities=34% Similarity=0.703 Sum_probs=48.4
Q ss_pred CCCCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhh-hhccCCCC
Q 027458 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE-AFNKFGAN 153 (223)
Q Consensus 100 G~~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e-~l~~~G~~ 153 (223)
+.+||| +|||+|+.+|+++++++|.+||+|||+||+|++|+++|+ .+++.|++
T Consensus 164 ~~yPGd-~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl 217 (243)
T PLN00099 164 KKYPGG-AFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 217 (243)
T ss_pred CcCCCC-cCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChH
Confidence 468999 899999999999999999999999999999999999999 46777764
No 20
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.42 E-value=1.2e-13 Score=124.59 Aligned_cols=54 Identities=24% Similarity=0.413 Sum_probs=50.3
Q ss_pred CCCCCCCcCCCCCCCC-ChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCCCC
Q 027458 100 GEVPGDYGYDPFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (223)
Q Consensus 100 G~~PGD~GfDPlgL~~-~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G~~ 153 (223)
..+|||++|||+||.+ |++++++++.+||+|||+||+|++|+++|+.+|+.|++
T Consensus 191 ~~yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl 245 (267)
T PLN00098 191 VGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPI 245 (267)
T ss_pred CCCCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChH
Confidence 3589999999999974 89999999999999999999999999999999998875
No 21
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.41 E-value=3.3e-13 Score=117.30 Aligned_cols=39 Identities=33% Similarity=0.746 Sum_probs=37.2
Q ss_pred CCCCCCC--CChhhHHHHHHHHhhhchhhhhhhhhhhhhhh
Q 027458 108 YDPFGLS--KKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146 (223)
Q Consensus 108 fDPlgL~--~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~ 146 (223)
|||+||+ .|+++++++|++||+||||||||++|+++||.
T Consensus 47 fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 47 FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecc
Confidence 9999997 47899999999999999999999999999997
No 22
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.39 E-value=2.5e-13 Score=111.47 Aligned_cols=50 Identities=46% Similarity=0.733 Sum_probs=46.4
Q ss_pred CCCCCCCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhhh
Q 027458 97 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146 (223)
Q Consensus 97 yL~G~~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~ 146 (223)
+.++.+|||++|||+|+.+++++.++++.+||+|||+||+|++|+++||.
T Consensus 107 ~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 107 GKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp SSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999999999999999999999999973
No 23
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.36 E-value=4.8e-13 Score=123.29 Aligned_cols=52 Identities=37% Similarity=0.567 Sum_probs=47.7
Q ss_pred CCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCCCC
Q 027458 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (223)
Q Consensus 102 ~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G~~ 153 (223)
+||+++|||+||++|++++++++++||+||||||+|++|+++|+.+|+.|++
T Consensus 252 YPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPl 303 (324)
T PLN00171 252 YPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPV 303 (324)
T ss_pred CCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChH
Confidence 3555569999999999999999999999999999999999999999988865
No 24
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.34 E-value=7.2e-13 Score=118.23 Aligned_cols=53 Identities=25% Similarity=0.364 Sum_probs=48.1
Q ss_pred CCCCCCc-----CCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCCCC
Q 027458 101 EVPGDYG-----YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (223)
Q Consensus 101 ~~PGD~G-----fDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G~~ 153 (223)
..|||.+ |||+||.+|++++++++.+||+|||+||++++|+++|+++|+.|++
T Consensus 170 ~~~~d~gYPgg~FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl 227 (244)
T PLN00097 170 DTNTDVGYPKGLFDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPV 227 (244)
T ss_pred CcccccCCCCCCCCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHH
Confidence 3445544 9999999999999999999999999999999999999999998875
No 25
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.26 E-value=4.2e-12 Score=110.40 Aligned_cols=51 Identities=27% Similarity=0.397 Sum_probs=40.8
Q ss_pred CCCCCCCcCC--CCCCCC-ChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccC
Q 027458 100 GEVPGDYGYD--PFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150 (223)
Q Consensus 100 G~~PGD~GfD--PlgL~~-~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~ 150 (223)
++.||||+++ ++|+.. |+|+.+++|++||+|||+||+|++|+++||.+++.
T Consensus 142 ~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g~ 195 (202)
T PLN00120 142 GEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGVE 195 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 5778865333 333332 78999999999999999999999999999999764
No 26
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.26 E-value=2.6e-12 Score=114.77 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=43.7
Q ss_pred CCCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCCCC
Q 027458 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (223)
Q Consensus 101 ~~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G~~ 153 (223)
..||||+|||+||++ ++++.+||+|||+||+|++|+++|+++++.|++
T Consensus 143 ~~pg~~~FDPLGl~~-----~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPl 190 (246)
T PLN00100 143 GVLSFFPFDPTGMDS-----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPL 190 (246)
T ss_pred CCCCCCCCCcccccH-----HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChH
Confidence 368999999999963 578999999999999999999999999998875
No 27
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.17 E-value=1.3e-11 Score=110.54 Aligned_cols=47 Identities=26% Similarity=0.504 Sum_probs=41.5
Q ss_pred CCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCCCC
Q 027458 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (223)
Q Consensus 102 ~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G~~ 153 (223)
+||+. ||||||+++ ++++++||+||||||+|++|+++|+++|+.|++
T Consensus 184 YPGG~-FDPLgl~~~----~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi 230 (250)
T PLN00101 184 YPGGI-FNPLNFAPT----EEAKEKELANGRLAMLAFLGFVVQHNVTGKGPF 230 (250)
T ss_pred CCCCc-cCccCCCcc----HHHHHHHHhhcchHHHHHhhHhheehccCCChH
Confidence 56554 999999865 378999999999999999999999999998875
No 28
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.16 E-value=1.9e-11 Score=109.71 Aligned_cols=51 Identities=25% Similarity=0.342 Sum_probs=46.0
Q ss_pred CCCCCcCCCCCCCC---------ChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCCCC
Q 027458 102 VPGDYGYDPFGLSK---------KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (223)
Q Consensus 102 ~PGD~GfDPlgL~~---------~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G~~ 153 (223)
+||+.-|||+||++ |+++++++|.+||+|||+||++++|+++|. .++.|++
T Consensus 191 yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~ 250 (255)
T PLN00170 191 YPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPL 250 (255)
T ss_pred cCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCch
Confidence 68877799999985 789999999999999999999999999999 5777765
No 29
>PHA02337 putative high light inducible protein
Probab=97.88 E-value=8e-06 Score=53.42 Aligned_cols=29 Identities=17% Similarity=0.053 Sum_probs=26.7
Q ss_pred HHHHhhhchhhhhhhhhhhhhhhhccCCC
Q 027458 124 QAYELIHARWAMLGAAGFIIPEAFNKFGA 152 (223)
Q Consensus 124 r~~EL~hGR~AMLgv~G~lv~e~l~~~G~ 152 (223)
..+|..|||+||+|++..+..|++++.++
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 35799999999999999999999998876
No 30
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.21 E-value=0.0001 Score=66.07 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=27.8
Q ss_pred HHHHHhhhchhhhhhhhhhhhhhhhccCCCC
Q 027458 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (223)
Q Consensus 123 ~r~~EL~hGR~AMLgv~G~lv~e~l~~~G~~ 153 (223)
+.++|+.|||+||+|++-.++.|.+++.|+.
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll 189 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLV 189 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHH
Confidence 3678999999999999999999999987763
No 31
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=95.75 E-value=0.0045 Score=53.83 Aligned_cols=34 Identities=35% Similarity=0.441 Sum_probs=29.4
Q ss_pred HHHHHHHHhhhchhhhhhhhhhhhhhhhc-cCCCC
Q 027458 120 FSKYQAYELIHARWAMLGAAGFIIPEAFN-KFGAN 153 (223)
Q Consensus 120 ~~~~r~~EL~hGR~AMLgv~G~lv~e~l~-~~G~~ 153 (223)
.+..+..|+-|||+||+|++-.++.|++| +.|+.
T Consensus 132 vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL 166 (214)
T PLN00084 132 VREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPL 166 (214)
T ss_pred HHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchH
Confidence 34456679999999999999999999999 88875
Done!