Query 027458
Match_columns 223
No_of_seqs 221 out of 962
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 17:09:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027458.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027458hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 100.0 1E-36 3.4E-41 266.9 9.9 130 72-205 13-145 (232)
2 3pl9_A Chlorophyll A-B binding 100.0 6.1E-36 2.1E-40 263.8 3.0 117 75-205 6-165 (243)
3 2wsc_2 LHCA2, type II chloroph 100.0 1.3E-33 4.3E-38 252.1 3.7 116 71-205 55-170 (269)
4 2wsc_4 Chlorophyll A-B binding 100.0 9.1E-32 3.1E-36 238.1 1.0 114 73-205 45-159 (251)
5 2wsc_3 LHCA3, type II chloroph 100.0 7.6E-31 2.6E-35 234.9 3.4 118 76-205 52-176 (276)
6 2wsc_1 AT3G54890, LHCA1; photo 99.9 3.9E-28 1.3E-32 213.8 7.6 114 79-205 44-159 (241)
7 3pl9_A Chlorophyll A-B binding 99.4 4.5E-14 1.5E-18 124.6 3.9 52 101-153 172-223 (243)
8 2wsc_3 LHCA3, type II chloroph 99.4 2.7E-14 9.1E-19 128.0 1.7 55 99-153 200-254 (276)
9 2bhw_A Chlorophyll A-B binding 99.4 1.4E-13 4.8E-18 120.4 5.1 54 99-153 153-206 (232)
10 2wsc_2 LHCA2, type II chloroph 99.4 4.9E-14 1.7E-18 125.9 1.0 55 99-153 192-247 (269)
11 2wsc_1 AT3G54890, LHCA1; photo 99.3 7.2E-13 2.5E-17 116.7 1.4 54 99-153 164-218 (241)
12 2wsc_4 Chlorophyll A-B binding 99.1 3.2E-11 1.1E-15 106.7 2.7 47 101-153 183-229 (251)
13 2wsc_H Photosystem I reaction 33.6 8.8 0.0003 31.1 0.0 26 1-26 1-30 (144)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=1e-36 Score=266.88 Aligned_cols=130 Identities=44% Similarity=0.866 Sum_probs=112.3
Q ss_pred hhhhhcCCCccccCcCccCCCCCCCCCCCCCCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCC
Q 027458 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (223)
Q Consensus 72 ~~~w~g~~R~~~lp~g~~~~~~~p~yL~G~~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G 151 (223)
.++|||+||++||| +++ .++|+||||++||||||||+||++|+|+++|||++||+||||||||++|++++|++++.|
T Consensus 13 ~~~~~~~~r~~~l~--~~~-~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G 89 (232)
T 2bhw_A 13 GSPWYGPDRVKYLG--PFS-GESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNG 89 (232)
T ss_dssp TCTTSSTTCCCTTG--GGC-CSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCcccCCCcccccC--ccc-cCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCC
Confidence 35899999999995 344 589999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCCcccccccccccCCCccccCCCCchh---hHHHHHHHHHHHHhhhhheeccC
Q 027458 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITN 205 (223)
Q Consensus 152 ~~~~p~~~Wf~AG~~~~~g~~l~Ylg~~~p~---~l~~li~~evlLmG~~E~~R~~~ 205 (223)
+.. ++..||++|...+.+..++|+++|... .+..++++|+++||++|.+|+.+
T Consensus 90 ~~~-~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~ 145 (232)
T 2bhw_A 90 VKF-GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG 145 (232)
T ss_dssp CCC-SCCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCC-cccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 643 357899999877776678899877532 24456678999999999999875
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=6.1e-36 Score=263.77 Aligned_cols=117 Identities=33% Similarity=0.739 Sum_probs=69.0
Q ss_pred hhcCCCccccCcCccCCCCCCCCCCCCCCCCCcCCCCCCCCChh------------------------------------
Q 027458 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------------------------------------ 118 (223)
Q Consensus 75 w~g~~R~~~lp~g~~~~~~~p~yL~G~~PGD~GfDPlgL~~~pe------------------------------------ 118 (223)
+++++|++|||+ ..+|+||||++||||||||+||+++||
T Consensus 6 ~~~~~r~~w~pg-----~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T 3pl9_A 6 GFSTDRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSL 80 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcccccccCC-----CCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhcccccccccccccccccccccc
Confidence 445799999996 899999999999999999999999987
Q ss_pred -------hHHHHHHHHhhhchhhhhhhhhhhhhhhhccCCCCCCCCcccccccccccCCCccccCCCCchhhHHHHHHHH
Q 027458 119 -------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE 191 (223)
Q Consensus 119 -------~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G~~~~p~~~Wf~AG~~~~~g~~l~Ylg~~~p~~l~~li~~e 191 (223)
+++|||++||+||||||||++|++++|+++ +.+||++|++.+.+ .++|++++.++++.+++++|
T Consensus 81 ~~~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~--------g~~W~~aG~~~~~~-g~~y~g~p~~~~i~~l~~~q 151 (243)
T 3pl9_A 81 QPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLT--------GITWQDAGKVELIE-GSSYLGQPLPFSMTTLIWIE 151 (243)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------SCCTTTHHHHHHHS-CEEETTEEECCCHHHHHHHH
T ss_pred ccccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhc--------Cccccccccccccc-ccccccCccchhhHHHHHHH
Confidence 378999999999999999999999999986 25799999876654 37899988888888888999
Q ss_pred HHHHhhhhheeccC
Q 027458 192 IVLVGGAEYYRITN 205 (223)
Q Consensus 192 vlLmG~~E~~R~~~ 205 (223)
+++||++|.+|+.+
T Consensus 152 v~lmG~~E~~R~~~ 165 (243)
T 3pl9_A 152 VLVIGYIEFQRNAE 165 (243)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhcc
Confidence 99999999999976
No 3
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.97 E-value=1.3e-33 Score=252.15 Aligned_cols=116 Identities=39% Similarity=0.770 Sum_probs=65.2
Q ss_pred hhhhhhcCCCccccCcCccCCCCCCCCCCCCCCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccC
Q 027458 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150 (223)
Q Consensus 71 ~~~~w~g~~R~~~lp~g~~~~~~~p~yL~G~~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~ 150 (223)
.+..+|+++|++|+|+ .++|.||||++||||||||+||++|+|+++|||++||+||||||||++|++++|++++.
T Consensus 55 ~~~~~~~~~r~~wlpg-----~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~ 129 (269)
T 2wsc_2 55 TVCTVAEPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKL 129 (269)
T ss_dssp --------------------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCT
T ss_pred eeecccCCCcccccCC-----CCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccC
Confidence 3456899999999996 78999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCcccccccccccCCCccccCCCCchhhHHHHHHHHHHHHhhhhheeccC
Q 027458 151 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205 (223)
Q Consensus 151 G~~~~p~~~Wf~AG~~~~~g~~l~Ylg~~~p~~l~~li~~evlLmG~~E~~R~~~ 205 (223)
|+.+. +.||++|.. +||.++. .++++|+++||++|.+|+++
T Consensus 130 G~~~~--p~w~~aG~~-------~~~~~~~-----~l~~~qi~liG~~E~~r~~~ 170 (269)
T 2wsc_2 130 GILNT--PSWYTAGEQ-------EYFTDTT-----TLFIVELVFIGWAEGRRWAD 170 (269)
T ss_dssp TSSSC--CCCCSTTSS-------SSCCCTT-----SHHHHHTTHHHHHHHHHHTT
T ss_pred CcccC--ccccccchh-------hhhcchH-----HHHHHHHHHHHHHHHHHHhc
Confidence 87743 569997653 5776653 24567899999999999764
No 4
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.96 E-value=9.1e-32 Score=238.05 Aligned_cols=114 Identities=34% Similarity=0.710 Sum_probs=67.0
Q ss_pred hhhhcC-CCccccCcCccCCCCCCCCCCCCCCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCC
Q 027458 73 AKWYGP-DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (223)
Q Consensus 73 ~~w~g~-~R~~~lp~g~~~~~~~p~yL~G~~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G 151 (223)
..+|++ +|++|+|+ .++|.||||++||||||||+||++|+|+++++|++||+||||||||++|++++|++++.|
T Consensus 45 ~~~~~~~~r~~~~pg-----~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g 119 (251)
T 2wsc_4 45 ASFKVEAKKGEWLPG-----LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 119 (251)
T ss_dssp -----------------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSC
T ss_pred ccccCcchhhhccCC-----CCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCC
Confidence 468999 89999996 789999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCcccccccccccCCCccccCCCCchhhHHHHHHHHHHHHhhhhheeccC
Q 027458 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205 (223)
Q Consensus 152 ~~~~p~~~Wf~AG~~~~~g~~l~Ylg~~~p~~l~~li~~evlLmG~~E~~R~~~ 205 (223)
+.+ .+.||++|.. +|++++.. ++++|+++||++|.+|+.+
T Consensus 120 ~~~--~p~w~~aG~~-------~~~~~~~~-----l~~~qi~liG~~E~~r~~~ 159 (251)
T 2wsc_4 120 IIN--VPKWYAAGKE-------EYFASSST-----LFVIEFILSHYVEIRRWQD 159 (251)
T ss_dssp SSC--CCCCSCCCSS-------SCSSCSSC-----TTTTHHHHHHTTTHHHHHH
T ss_pred ccC--CccccccchH-------hhhccchH-----HHHHHHHHHHHHHHHHhhc
Confidence 874 3579997653 57776532 3457888999999999764
No 5
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.96 E-value=7.6e-31 Score=234.93 Aligned_cols=118 Identities=36% Similarity=0.660 Sum_probs=67.2
Q ss_pred hcCCCccccCcCccCCCCCCCCCCCCCCCCCcCCCCCCCCChhhH------HHHHHHHhhhchhhhhhhhhhhhhhhhcc
Q 027458 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF------SKYQAYELIHARWAMLGAAGFIIPEAFNK 149 (223)
Q Consensus 76 ~g~~R~~~lp~g~~~~~~~p~yL~G~~PGD~GfDPlgL~~~pe~~------~~~r~~EL~hGR~AMLgv~G~lv~e~l~~ 149 (223)
||++|++|||+ .++|+||||++||||||||+|| .|++++ +++|++||+||||||||++|++++|++++
T Consensus 52 ~g~~R~~wlP~-----~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~ 125 (276)
T 2wsc_3 52 QGSDRPLWFAS-----KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125 (276)
T ss_dssp ---------------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSS
T ss_pred cCCCccccCCC-----CCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcc
Confidence 89999999995 7899999999999999999999 789999 99999999999999999999999999999
Q ss_pred CCCCCCC-CcccccccccccCCCccccCCCCchhhHHHHHHHHHHHHhhhhheeccC
Q 027458 150 FGANCGP-EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205 (223)
Q Consensus 150 ~G~~~~p-~~~Wf~AG~~~~~g~~l~Ylg~~~p~~l~~li~~evlLmG~~E~~R~~~ 205 (223)
.|+.... ...||+++.+. ..+..+||+++.. ++++|+++||++|.+|+++
T Consensus 126 ~g~~~~~~p~~w~~~g~ip-~aG~~~~~~~~~~-----l~~~qi~liG~~E~~r~~~ 176 (276)
T 2wsc_3 126 AGLIPQETALPWFRTGFIP-PAGTYNYWADSYT-----LFVFEMALMGFAEHRRFQD 176 (276)
T ss_dssp CCCCCCSSCCSSSSCCCC------CCCSCCCCS-----TTHHHHHHTHHHHTTTTTG
T ss_pred cccccccCcchhhhhhccc-chhHHHHhccchH-----HHHHHHHHHHHHHHhhhcc
Confidence 8876321 24599987753 3445789987642 4567999999999999764
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.94 E-value=3.9e-28 Score=213.84 Aligned_cols=114 Identities=34% Similarity=0.712 Sum_probs=78.9
Q ss_pred CCccccCcCccCCCCCCCCCCCCCCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCCCCCCCCc
Q 027458 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEA 158 (223)
Q Consensus 79 ~R~~~lp~g~~~~~~~p~yL~G~~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G~~~~p~~ 158 (223)
-|..|+|+ ...|+||+|++||||||||+||++|+|+++|||++||+||||||||++|++++|+++. .
T Consensus 44 m~~~w~P~-----~~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~--------~ 110 (241)
T 2wsc_1 44 MAAHWMPG-----EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY--------G 110 (241)
T ss_dssp ----------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC--------C
T ss_pred cccccCCC-----CCCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC--------C
Confidence 45679996 7899999999999999999999999999999999999999999999999999999753 2
Q ss_pred cccccccc-ccCCCccccCCCCchh-hHHHHHHHHHHHHhhhhheeccC
Q 027458 159 VWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITN 205 (223)
Q Consensus 159 ~Wf~AG~~-~~~g~~l~Ylg~~~p~-~l~~li~~evlLmG~~E~~R~~~ 205 (223)
.|+++++. .+.++..+|++++.++ .+.+++++|+++||++|.+|+.+
T Consensus 111 ~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~ 159 (241)
T 2wsc_1 111 NWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME 159 (241)
T ss_dssp -----CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSC
T ss_pred ccccccchhccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47776542 3456667898887665 45667789999999999999854
No 7
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.43 E-value=4.5e-14 Score=124.56 Aligned_cols=52 Identities=37% Similarity=0.589 Sum_probs=49.7
Q ss_pred CCCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCCCC
Q 027458 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (223)
Q Consensus 101 ~~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G~~ 153 (223)
.+|||+ |||+||++|+++++++|++||+|||+||+|++|+++||++++.|++
T Consensus 172 ~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl 223 (243)
T 3pl9_A 172 LYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPL 223 (243)
T ss_dssp TCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred cCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChH
Confidence 589999 9999999999999999999999999999999999999999998864
No 8
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.42 E-value=2.7e-14 Score=127.98 Aligned_cols=55 Identities=22% Similarity=0.436 Sum_probs=46.5
Q ss_pred CCCCCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCCCC
Q 027458 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (223)
Q Consensus 99 ~G~~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G~~ 153 (223)
|..+|||++|||+||++++++++++|++||+||||||||++|+++||++++.|++
T Consensus 200 d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~ 254 (276)
T 2wsc_3 200 EPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPY 254 (276)
T ss_dssp SCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCS
T ss_pred cccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChH
Confidence 3468999999999999988899999999999999999999999999999998875
No 9
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.40 E-value=1.4e-13 Score=120.38 Aligned_cols=54 Identities=30% Similarity=0.568 Sum_probs=50.6
Q ss_pred CCCCCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCCCC
Q 027458 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (223)
Q Consensus 99 ~G~~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G~~ 153 (223)
|..+|||+ |||+||.+|+++++++|++||+|||+||+|++|+++||.+++.|++
T Consensus 153 d~~~Pg~~-fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~ 206 (232)
T 2bhw_A 153 DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 206 (232)
T ss_dssp SSSCCCTT-SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSH
T ss_pred cccCCCcc-cccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChH
Confidence 45689998 9999999999999999999999999999999999999999998864
No 10
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.38 E-value=4.9e-14 Score=125.89 Aligned_cols=55 Identities=24% Similarity=0.445 Sum_probs=50.7
Q ss_pred CCCCCCCCcCCCCCCCC-ChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCCCC
Q 027458 99 TGEVPGDYGYDPFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (223)
Q Consensus 99 ~G~~PGD~GfDPlgL~~-~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G~~ 153 (223)
|..+|||++|||+||.+ ++|+++++|++||+|||+||+|++|+++||.+++.|++
T Consensus 192 d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l 247 (269)
T 2wsc_2 192 DVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 247 (269)
T ss_dssp SCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSS
T ss_pred ccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChH
Confidence 34689999999999985 78889999999999999999999999999999998876
No 11
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.26 E-value=7.2e-13 Score=116.69 Aligned_cols=54 Identities=30% Similarity=0.612 Sum_probs=49.1
Q ss_pred CCCCCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhh-hhccCCCC
Q 027458 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE-AFNKFGAN 153 (223)
Q Consensus 99 ~G~~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e-~l~~~G~~ 153 (223)
++.+||| +|||+|+.+|+++++++|.+||+|||+||+|++|++++| .+++.|++
T Consensus 164 ~~~yPgg-~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl 218 (241)
T 2wsc_1 164 KKKYPGG-AFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 218 (241)
T ss_dssp CSSSCSC-CSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCC
T ss_pred CCCCCCC-cccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchH
Confidence 4578998 599999999999999999999999999999999999999 57888865
No 12
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.07 E-value=3.2e-11 Score=106.67 Aligned_cols=47 Identities=26% Similarity=0.453 Sum_probs=42.9
Q ss_pred CCCCCCcCCCCCCCCChhhHHHHHHHHhhhchhhhhhhhhhhhhhhhccCCCC
Q 027458 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (223)
Q Consensus 101 ~~PGD~GfDPlgL~~~pe~~~~~r~~EL~hGR~AMLgv~G~lv~e~l~~~G~~ 153 (223)
.+|||+ |||+++.+ ++++|.+||+|||+ |+|++|+++||++++.|++
T Consensus 183 ~yPGg~-FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl 229 (251)
T 2wsc_4 183 GYPGGI-FNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPF 229 (251)
T ss_dssp HSSCCT-TCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCC
T ss_pred cCCCCc-cCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHH
Confidence 479998 99999975 67789999999999 9999999999999998876
No 13
>2wsc_H Photosystem I reaction center subunit VI, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_H* 2wsf_H* 2o01_H* 3lw5_H*
Probab=33.59 E-value=8.8 Score=31.11 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=0.0
Q ss_pred Ccccccc--cCccc--cccchhhcCCcccc
Q 027458 1 MASLAAS--STPAA--SIGAKEMLGNPLNV 26 (223)
Q Consensus 1 ~~~~~~~--~~~~~--~~~~~~~~g~~~~~ 26 (223)
||||+.. .+.+. -|+.|++-|+.+..
T Consensus 1 maslat~~a~~p~~~kgl~gSs~~G~Kl~v 30 (144)
T 2wsc_H 1 MASLATLAAVQPTTLKGLAGSSIAGTKLHI 30 (144)
T ss_dssp ------------------------------
T ss_pred CcchhhhhhcCccccccccccccccceEee
Confidence 7776652 23333 37788888988864
Done!