Query 027460
Match_columns 223
No_of_seqs 111 out of 1257
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 10:14:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 6.7E-38 1.5E-42 274.3 19.1 170 19-194 163-332 (365)
2 PTZ00224 protein phosphatase 2 100.0 5.9E-36 1.3E-40 263.0 20.6 170 21-195 103-274 (381)
3 KOG0697 Protein phosphatase 1B 100.0 3.7E-36 8E-41 246.7 16.5 171 20-194 123-293 (379)
4 KOG0699 Serine/threonine prote 100.0 1.1E-34 2.4E-39 245.4 16.2 183 14-196 322-507 (542)
5 KOG0698 Serine/threonine prote 100.0 5.9E-34 1.3E-38 247.5 19.4 167 19-197 137-309 (330)
6 PF00481 PP2C: Protein phospha 100.0 3.6E-35 7.9E-40 246.6 11.2 158 18-184 95-254 (254)
7 COG0631 PTC1 Serine/threonine 100.0 1.5E-33 3.3E-38 237.7 12.6 158 12-195 98-255 (262)
8 KOG0700 Protein phosphatase 2C 100.0 5.3E-30 1.1E-34 220.7 12.5 165 10-174 189-377 (390)
9 smart00332 PP2Cc Serine/threon 100.0 1.5E-28 3.4E-33 205.0 18.7 157 18-189 98-255 (255)
10 cd00143 PP2Cc Serine/threonine 100.0 5.6E-28 1.2E-32 201.0 19.1 160 17-191 94-254 (254)
11 PRK14559 putative protein seri 100.0 2.1E-28 4.5E-33 226.5 15.8 159 18-197 480-640 (645)
12 KOG1323 Serine/threonine phosp 99.9 6.3E-24 1.4E-28 178.7 12.0 177 15-193 239-488 (493)
13 KOG1379 Serine/threonine prote 99.8 3.3E-18 7.1E-23 143.7 15.0 138 19-191 164-330 (330)
14 KOG0618 Serine/threonine phosp 99.7 9.7E-18 2.1E-22 157.0 8.8 172 1-192 591-772 (1081)
15 smart00331 PP2C_SIG Sigma fact 99.5 7.6E-13 1.7E-17 106.2 12.4 108 19-172 82-192 (193)
16 PF13672 PP2C_2: Protein phosp 99.3 1.5E-12 3.2E-17 106.1 6.3 104 16-155 91-196 (212)
17 PF07228 SpoIIE: Stage II spor 99.3 1.8E-11 3.9E-16 98.0 11.0 124 21-192 59-193 (193)
18 TIGR02865 spore_II_E stage II 99.3 3.1E-11 6.6E-16 115.5 13.8 123 21-191 634-763 (764)
19 COG2208 RsbU Serine phosphatas 98.3 1E-05 2.2E-10 71.6 12.9 124 22-192 231-366 (367)
20 PF09436 DUF2016: Domain of un 53.1 8.3 0.00018 26.0 1.3 18 125-143 26-43 (72)
21 PF05785 CNF1: Rho-activating 52.4 20 0.00043 30.6 3.7 27 17-44 127-153 (281)
22 COG5518 Bacteriophage capsid p 41.7 27 0.00058 31.2 3.0 116 30-169 189-306 (492)
23 KOG0641 WD40 repeat protein [G 37.6 2.2E+02 0.0049 23.8 7.6 31 33-63 242-274 (350)
24 PF01436 NHL: NHL repeat; Int 35.0 73 0.0016 16.7 3.2 21 29-49 8-28 (28)
25 PRK15322 invasion protein OrgB 32.2 1.8E+02 0.0039 23.7 6.1 52 121-173 142-194 (210)
26 COG2168 DsrH Uncharacterized c 29.6 38 0.00081 24.1 1.6 31 121-152 20-50 (96)
27 PRK06369 nac nascent polypepti 27.2 2.6E+02 0.0056 20.6 6.8 56 110-168 37-99 (115)
28 PF06972 DUF1296: Protein of u 26.5 1.3E+02 0.0028 19.4 3.5 27 141-170 19-45 (60)
29 KOG3571 Dishevelled 3 and rela 26.4 2E+02 0.0043 27.0 6.0 73 122-219 295-370 (626)
30 COG3700 AphA Acid phosphatase 26.1 2.5E+02 0.0055 22.6 5.9 47 126-173 71-128 (237)
31 COG4669 EscJ Type III secretor 25.8 1.1E+02 0.0023 25.6 3.9 36 164-203 167-202 (246)
32 COG0501 HtpX Zn-dependent prot 20.6 1.3E+02 0.0028 25.3 3.6 39 115-154 125-165 (302)
33 TIGR03735 PRTRC_A PRTRC system 20.0 58 0.0013 26.3 1.3 49 124-173 24-89 (192)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=6.7e-38 Score=274.32 Aligned_cols=170 Identities=40% Similarity=0.711 Sum_probs=152.3
Q ss_pred CCCCcceEEEEEEECCeEEEEEeccccEEEEeCCeeeeCCCCCCCCcHHHHHHHHHhCCeEeecccCCccccccccCChh
Q 027460 19 GPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVE 98 (223)
Q Consensus 19 ~~~~GsT~~~~~i~~~~l~i~~vGDSr~~l~~~~~~~~lt~dH~~~~~~e~~ri~~~~~~~~~~r~~~~~~ltr~lG~~~ 98 (223)
...||||++++++.++++|++|+||||+|+++++++++||+||++.++.|++||...|+.+...++++.+++||+|||..
T Consensus 163 ~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg~v~~g~v~g~l~vTRalGD~~ 242 (365)
T PLN03145 163 SLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGGYVYDGYLNGQLNVARALGDWH 242 (365)
T ss_pred CCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCCceecceECCcccccccccccc
Confidence 34599999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhcCCCCcccceeeecCcceEEEecCCCeEEEEEcCCCccCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCC
Q 027460 99 FKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGG 178 (223)
Q Consensus 99 ~k~~~~~~~~~~~v~~~p~i~~~~l~~~d~~lvL~SDGl~d~l~~~~i~~~v~~~~~~~~~~~~~a~~l~~~a~~~~~~~ 178 (223)
+|.... .....++++|++..+++.++|.|||||||||||+++++++.+++.+.+....++.++|+.|++.|+. +
T Consensus 243 ~k~~k~--~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~~~p~~aa~~Lv~~Al~----r 316 (365)
T PLN03145 243 MEGMKG--SDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPVMCSKELVDEALK----R 316 (365)
T ss_pred cccccc--ccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh----C
Confidence 763211 1113467899999999999999999999999999999999988877766566899999999999999 8
Q ss_pred CCCCCeeEEEEEcCCC
Q 027460 179 EGCDNMTMILVQFKNA 194 (223)
Q Consensus 179 ~~~DN~Tvivi~~~~~ 194 (223)
++.||+||||++|...
T Consensus 317 gs~DNITvIVV~l~~~ 332 (365)
T PLN03145 317 KSGDNLAVVVVCFQSQ 332 (365)
T ss_pred CCCCCEEEEEEEeecC
Confidence 8999999999999963
No 2
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=5.9e-36 Score=263.01 Aligned_cols=170 Identities=35% Similarity=0.621 Sum_probs=152.3
Q ss_pred CCcceEEEEEEE-CCeEEEEEeccccEEEEeCCeeeeCCCCCCCCcHHHHHHHHHhCCeEeecccCCccccccccCChhh
Q 027460 21 TSGSTACVAIIR-DKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEF 99 (223)
Q Consensus 21 ~~GsT~~~~~i~-~~~l~i~~vGDSr~~l~~~~~~~~lt~dH~~~~~~e~~ri~~~~~~~~~~r~~~~~~ltr~lG~~~~ 99 (223)
.+|||++++++. +++++++|+||||+|++++|++++||+||++.++.|+.||...++.+..+|++|.+.+||+||+..+
T Consensus 103 ~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~~Rv~G~l~vTRalGd~~~ 182 (381)
T PTZ00224 103 EGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEACGGRVVSNRVDGDLAVSRAFGDRSF 182 (381)
T ss_pred CCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHHHHccCEeccccccCceeeecccCCccc
Confidence 469999998886 5799999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcCCCCcccceeeecCcceEEEecCCCeEEEEEcCCCcc-CCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCC
Q 027460 100 KLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWD-CLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGG 178 (223)
Q Consensus 100 k~~~~~~~~~~~v~~~p~i~~~~l~~~d~~lvL~SDGl~d-~l~~~~i~~~v~~~~~~~~~~~~~a~~l~~~a~~~~~~~ 178 (223)
|.........+.++++|++..+.+.++| +|||||||||| +++++++.+++.+.+....++..+|+.|++.|+. +
T Consensus 183 K~~~~~~~~~~~v~~~Pdi~~~~l~~~D-~llLaSDGL~d~~ls~eEi~~iv~~~l~~~~~~~~aA~~Lv~~A~~----r 257 (381)
T PTZ00224 183 KVKGTGDYLEQKVIAVPDVTHLTCQSND-FIILACDGVFEGNFSNEEVVAFVKEQLETCDDLAVVAGRVCDEAIR----R 257 (381)
T ss_pred ccccccccccCcceeeeEEEEEECCCCC-EEEEECCCcCcCccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh----c
Confidence 8765433344567899999999999998 89999999999 8999999999987665566899999999999999 8
Q ss_pred CCCCCeeEEEEEcCCCC
Q 027460 179 EGCDNMTMILVQFKNAS 195 (223)
Q Consensus 179 ~~~DN~Tvivi~~~~~~ 195 (223)
|+.||+||||+++....
T Consensus 258 Gs~DNITvIvV~~~~~~ 274 (381)
T PTZ00224 258 GSKDNISCLIVQLKDGA 274 (381)
T ss_pred CCCCCEEEEEEEeeCCC
Confidence 99999999999998543
No 3
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-36 Score=246.65 Aligned_cols=171 Identities=42% Similarity=0.753 Sum_probs=164.9
Q ss_pred CCCcceEEEEEEECCeEEEEEeccccEEEEeCCeeeeCCCCCCCCcHHHHHHHHHhCCeEeecccCCccccccccCChhh
Q 027460 20 PTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEF 99 (223)
Q Consensus 20 ~~~GsT~~~~~i~~~~l~i~~vGDSr~~l~~~~~~~~lt~dH~~~~~~e~~ri~~~~~~~~~~r~~~~~~ltr~lG~~~~ 99 (223)
.++|||++.+++...++|++|+||||++++|+|+++.-|+||+|.++.|++||.++||.+...|+||.++++|+|||+.|
T Consensus 123 drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeRIqnAGGSVMIqRvNGsLAVSRAlGDydy 202 (379)
T KOG0697|consen 123 DRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKERIQNAGGSVMIQRVNGSLAVSRALGDYDY 202 (379)
T ss_pred ccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCChHHHHHHhcCCCeEEEEEecceeeeehhccCccc
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCcccceeeecCcceEEEecCCCeEEEEEcCCCccCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCC
Q 027460 100 KLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGE 179 (223)
Q Consensus 100 k~~~~~~~~~~~v~~~p~i~~~~l~~~d~~lvL~SDGl~d~l~~~~i~~~v~~~~~~~~~~~~~a~~l~~~a~~~~~~~~ 179 (223)
|.....++...-|+++|++..+.-...|.||||++||+||.++++|+-++++.-+....++..+|..+++.|+- +|
T Consensus 203 K~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelcefv~sRl~Vt~dL~~vcn~VvDtCLh----KG 278 (379)
T KOG0697|consen 203 KNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEFVKSRLEVTSDLEEVCNDVVDTCLH----KG 278 (379)
T ss_pred ccCCCCCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHHHHHhhheecccHHHHHHHHHHHHHh----cc
Confidence 99988888899999999999999888888999999999999999999999999999999999999999999999 89
Q ss_pred CCCCeeEEEEEcCCC
Q 027460 180 GCDNMTMILVQFKNA 194 (223)
Q Consensus 180 ~~DN~Tvivi~~~~~ 194 (223)
++||+|++++-|...
T Consensus 279 SRDNMsivlvcfp~A 293 (379)
T KOG0697|consen 279 SRDNMSIVLVCFPGA 293 (379)
T ss_pred CccCceEEEEecCCC
Confidence 999999999999863
No 4
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-34 Score=245.40 Aligned_cols=183 Identities=55% Similarity=0.945 Sum_probs=172.0
Q ss_pred CCCCCCCCCcceEEEEEEECCeEEEEEeccccEEEEeCCeeeeCCCCCCCCcHHHHHHHHHhCCeEe-ecccCCcccccc
Q 027460 14 HSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQ-VGRVNGSLNLAR 92 (223)
Q Consensus 14 ~~~~~~~~~GsT~~~~~i~~~~l~i~~vGDSr~~l~~~~~~~~lt~dH~~~~~~e~~ri~~~~~~~~-~~r~~~~~~ltr 92 (223)
-.+..+..+|||++||++.+++|+++|.||||+++.|+|+.+.++.||.|..+.|..||+.+||.+. ..|+||.++++|
T Consensus 322 g~EePG~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlDGRVNGGLNLSR 401 (542)
T KOG0699|consen 322 GAEEPGEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLDGRVNGGLNLSR 401 (542)
T ss_pred cCcCCCCCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeecceecCccchhh
Confidence 3456677899999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred ccCChhhhhcCCCCcccceeeecCcceEEEecCCCeEEEEEcCCCccCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 027460 93 AIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCL 172 (223)
Q Consensus 93 ~lG~~~~k~~~~~~~~~~~v~~~p~i~~~~l~~~d~~lvL~SDGl~d~l~~~~i~~~v~~~~~~~~~~~~~a~~l~~~a~ 172 (223)
+|||.-||....++.+..-|++-|+|....|.+.|.|+||++||||++++.+++.++|+..+..+..+..+|+.|+++|+
T Consensus 402 A~GDHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CL 481 (542)
T KOG0699|consen 402 AFGDHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICEELCDACL 481 (542)
T ss_pred hhhhhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC--CCCCCCCeeEEEEEcCCCCC
Q 027460 173 APSA--GGEGCDNMTMILVQFKNASN 196 (223)
Q Consensus 173 ~~~~--~~~~~DN~Tvivi~~~~~~~ 196 (223)
...+ -+...||+|||++.|+....
T Consensus 482 Ap~T~GDGTGCDNMT~ii~~Fkrk~~ 507 (542)
T KOG0699|consen 482 APSTDGDGTGCDNMTVIITTFKRKSK 507 (542)
T ss_pred CCCCCCCCcCCCcceEEEEEeccchh
Confidence 8766 34577999999999985443
No 5
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-34 Score=247.49 Aligned_cols=167 Identities=47% Similarity=0.713 Sum_probs=152.1
Q ss_pred CCCCcceEEEEEEECC-eEEEEEeccccEEEEeCC-eeeeCCCCCCCCcHHHHHHHHHhCCeEee----cccCCcccccc
Q 027460 19 GPTSGSTACVAIIRDK-QLVVANAGDSRCVLSRKG-QALNLSKDHKPDLEVEKDRILKAGGFIQV----GRVNGSLNLAR 92 (223)
Q Consensus 19 ~~~~GsT~~~~~i~~~-~l~i~~vGDSr~~l~~~~-~~~~lt~dH~~~~~~e~~ri~~~~~~~~~----~r~~~~~~ltr 92 (223)
...+|||++++++..+ ++|++|+||||++|.+++ +.++||.||++..+.|+.||...||.+.. .|++|.++++|
T Consensus 137 ~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~GG~v~~~~~~~Rv~G~LavsR 216 (330)
T KOG0698|consen 137 NRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAGGRVSNWGGVWRVNGVLAVSR 216 (330)
T ss_pred CCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcCCEEEEcCCcceEeceEEEee
Confidence 4678888888888754 999999999999999865 89999999999999999999999999993 59999999999
Q ss_pred ccCChhhhhcCCCCcccceeeecCcceEEEecCCCeEEEEEcCCCccCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 027460 93 AIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCL 172 (223)
Q Consensus 93 ~lG~~~~k~~~~~~~~~~~v~~~p~i~~~~l~~~d~~lvL~SDGl~d~l~~~~i~~~v~~~~~~~~~~~~~a~~l~~~a~ 172 (223)
+|||..+|. ++++++|++....+...|.||||+||||||.++++++.++++..+.....+..++..+...|.
T Consensus 217 a~GD~~~k~--------~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~~a~~~l~~~a~ 288 (330)
T KOG0698|consen 217 AFGDVELKS--------QGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISSPLAAAKLLATEAL 288 (330)
T ss_pred ecCCHHhcC--------CcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999999883 678999999999999999999999999999999999999999976556688899999999998
Q ss_pred cCCCCCCCCCCeeEEEEEcCCCCCC
Q 027460 173 APSAGGEGCDNMTMILVQFKNASNN 197 (223)
Q Consensus 173 ~~~~~~~~~DN~Tvivi~~~~~~~~ 197 (223)
. +++.||+||||+.|..+...
T Consensus 289 ~----~~s~DnitvvvV~l~~~~~~ 309 (330)
T KOG0698|consen 289 S----RGSKDNITVVVVRLKSSPKS 309 (330)
T ss_pred h----cCCCCCeEEEEEEecCcccc
Confidence 8 89999999999999986654
No 6
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=3.6e-35 Score=246.56 Aligned_cols=158 Identities=48% Similarity=0.748 Sum_probs=136.4
Q ss_pred CCCCCcceEEEEEEECCeEEEEEeccccEEEEeCCeee-eCCCCCCCCcHHHHHHHHHhCCeEe-ecccCCccccccccC
Q 027460 18 HGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQAL-NLSKDHKPDLEVEKDRILKAGGFIQ-VGRVNGSLNLARAIG 95 (223)
Q Consensus 18 ~~~~~GsT~~~~~i~~~~l~i~~vGDSr~~l~~~~~~~-~lt~dH~~~~~~e~~ri~~~~~~~~-~~r~~~~~~ltr~lG 95 (223)
....+|||++++++.++++|++|+||||+|+++++... +||+||++.++.|+.||+..|+.+. ..|+++.+.+||+||
T Consensus 95 ~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~~~rv~g~l~~sRalG 174 (254)
T PF00481_consen 95 ESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSENGRVNGVLAVSRALG 174 (254)
T ss_dssp THTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEETEEETTTBSSSB-EE
T ss_pred ccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccceeeccccccccchhhhhccccccccc
Confidence 56789999999999999999999999999999999888 9999999999999999999999999 899999999999999
Q ss_pred ChhhhhcCCCCcccceeeecCcceEEEecCCCeEEEEEcCCCccCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCC
Q 027460 96 DVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPS 175 (223)
Q Consensus 96 ~~~~k~~~~~~~~~~~v~~~p~i~~~~l~~~d~~lvL~SDGl~d~l~~~~i~~~v~~~~~~~~~~~~~a~~l~~~a~~~~ 175 (223)
|..+|.+. +++|+++|++..+++.++|.|||||||||||+++++++.+++.+.......+..+|+.|++.|+.
T Consensus 175 d~~~k~~~-----~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~~-- 247 (254)
T PF00481_consen 175 DFDLKPPG-----KPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQEAAEKLVDEAIA-- 247 (254)
T ss_dssp -GGGTTCT-----SSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH--
T ss_pred cccccccc-----cceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh--
Confidence 99998533 46789999999999999998999999999999999999999999776555699999999999999
Q ss_pred CCCCCCCCe
Q 027460 176 AGGEGCDNM 184 (223)
Q Consensus 176 ~~~~~~DN~ 184 (223)
+++.|||
T Consensus 248 --~gs~DNi 254 (254)
T PF00481_consen 248 --RGSKDNI 254 (254)
T ss_dssp --TTHHSHE
T ss_pred --cCCCCCC
Confidence 8999996
No 7
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-33 Score=237.69 Aligned_cols=158 Identities=33% Similarity=0.543 Sum_probs=146.4
Q ss_pred CCCCCCCCCCCcceEEEEEEECCeEEEEEeccccEEEEeCCeeeeCCCCCCCCcHHHHHHHHHhCCeEeecccCCccccc
Q 027460 12 GPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLA 91 (223)
Q Consensus 12 ~~~~~~~~~~~GsT~~~~~i~~~~l~i~~vGDSr~~l~~~~~~~~lt~dH~~~~~~e~~ri~~~~~~~~~~r~~~~~~lt 91 (223)
....+.+...||||++++++.+++++++||||||+|+++++++++||.||++.+..++.|++..++...++|++ .+|
T Consensus 98 ~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~~~~~~~~~~~~~~~~~---~lt 174 (262)
T COG0631 98 EGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQRGIITPEEARSHPRRN---ALT 174 (262)
T ss_pred hhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHHHHHhcCCCHHHHHhCccch---hhh
Confidence 33345666889999999999999999999999999999999999999999999999999999999888899998 999
Q ss_pred cccCChhhhhcCCCCcccceeeecCcceEEEecCCCeEEEEEcCCCccCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 027460 92 RAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRC 171 (223)
Q Consensus 92 r~lG~~~~k~~~~~~~~~~~v~~~p~i~~~~l~~~d~~lvL~SDGl~d~l~~~~i~~~v~~~~~~~~~~~~~a~~l~~~a 171 (223)
|+||+.. ...|++...++.++| |+||||||||+.++++++.+++.. ...++.+++.|++.|
T Consensus 175 ralG~~~--------------~~~p~~~~~~~~~~d-~llL~SDGl~d~v~~~~i~~il~~----~~~~~~~~~~li~~a 235 (262)
T COG0631 175 RALGDFD--------------LLEPDITELELEPGD-FLLLCSDGLWDVVSDDEIVDILKN----SETPQEAADKLIELA 235 (262)
T ss_pred hhcCCCc--------------ccceeEEEEEcCCCC-EEEEECCCCccCcCHHHHHHHHhc----CCCHHHHHHHHHHHH
Confidence 9999998 488999999999997 888999999999999999999987 568999999999999
Q ss_pred hcCCCCCCCCCCeeEEEEEcCCCC
Q 027460 172 LAPSAGGEGCDNMTMILVQFKNAS 195 (223)
Q Consensus 172 ~~~~~~~~~~DN~Tvivi~~~~~~ 195 (223)
+. +++.||+|++++++....
T Consensus 236 ~~----~g~~DNiT~ilv~~~~~~ 255 (262)
T COG0631 236 LE----GGGPDNITVVLVRLNGEG 255 (262)
T ss_pred Hh----cCCCCceEEEEEEeeccc
Confidence 99 899999999999998755
No 8
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.97 E-value=5.3e-30 Score=220.68 Aligned_cols=165 Identities=31% Similarity=0.429 Sum_probs=141.0
Q ss_pred hcCCCCCCCCCCCcceEEEEEEECCeEEEEEeccccEEEEe---CC---eeeeCCCCCCCCcHHHHHHHHHhCC----eE
Q 027460 10 LEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSR---KG---QALNLSKDHKPDLEVEKDRILKAGG----FI 79 (223)
Q Consensus 10 ~~~~~~~~~~~~~GsT~~~~~i~~~~l~i~~vGDSr~~l~~---~~---~~~~lt~dH~~~~~~e~~ri~~~~~----~~ 79 (223)
.........-+.+||||++.++.++.|||+|+||||++|.. ++ ..+|||.||+..++.|++||...+. .+
T Consensus 189 ~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~dHn~~ne~Ev~Rir~eHPdd~~~v 268 (390)
T KOG0700|consen 189 DKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQLSTDHNASNEDEVRRIRSEHPDDPHIV 268 (390)
T ss_pred HHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEecChhhccccHHHHHHHHHhCCCCcceE
Confidence 44555667778999999999999999999999999999953 33 5799999999999999999999874 33
Q ss_pred eec--ccCCccccccccCChhhhhcCCC------------CcccceeeecCcceEEEecCCCeEEEEEcCCCccCCCHHH
Q 027460 80 QVG--RVNGSLNLARAIGDVEFKLNKSL------------PAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQE 145 (223)
Q Consensus 80 ~~~--r~~~~~~ltr~lG~~~~k~~~~~------------~~~~~~v~~~p~i~~~~l~~~d~~lvL~SDGl~d~l~~~~ 145 (223)
... |+.|.+.+||+|||..+|++..+ ...+|+++++|.++.++|.+.|+||||+|||+|++|+++|
T Consensus 269 v~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~HrL~p~DkFLIlASDGLwE~lsNee 348 (390)
T KOG0700|consen 269 VNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHKLTPNDKFLILASDGLWEYLSNEE 348 (390)
T ss_pred eeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEEcCCCCeEEEEeccchhhhcChHH
Confidence 344 99999999999999999988655 3358999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhhcC
Q 027460 146 LVDFVRDQLTNETKLSVICEKVFDRCLAP 174 (223)
Q Consensus 146 i~~~v~~~~~~~~~~~~~a~~l~~~a~~~ 174 (223)
+..+|...+.....-+.+|++|++.|+..
T Consensus 349 aV~lV~~~i~~~~pd~~~A~hLIr~aL~~ 377 (390)
T KOG0700|consen 349 AVSLVHEFISGKFPDGNPATHLIRHALGR 377 (390)
T ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHhh
Confidence 99999987654233346688888887763
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.96 E-value=1.5e-28 Score=205.03 Aligned_cols=157 Identities=50% Similarity=0.791 Sum_probs=140.6
Q ss_pred CCCCCcceEEEEEEECCeEEEEEeccccEEEEeCCeeeeCCCCCCCCcHHHHHHHHHhCCeEeecccCCccccccccCCh
Q 027460 18 HGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDV 97 (223)
Q Consensus 18 ~~~~~GsT~~~~~i~~~~l~i~~vGDSr~~l~~~~~~~~lt~dH~~~~~~e~~ri~~~~~~~~~~r~~~~~~ltr~lG~~ 97 (223)
....+|||++++++..+.++++|+||||+|+++++++.++|.||++.+..+..|+...++.+...+.++...+||++|+.
T Consensus 98 ~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~~~~~~~~lt~~~g~~ 177 (255)
T smart00332 98 EDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVINGRVNGVLALSRAIGDF 177 (255)
T ss_pred CCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEECCeECCeEecccccCCH
Confidence 44679999999999999999999999999999999999999999999999999999999888777788888999999998
Q ss_pred hhhhcCCCCcccceeeecCcceEEEe-cCCCeEEEEEcCCCccCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCC
Q 027460 98 EFKLNKSLPAEKQIVTANPDISTIEL-CDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSA 176 (223)
Q Consensus 98 ~~k~~~~~~~~~~~v~~~p~i~~~~l-~~~d~~lvL~SDGl~d~l~~~~i~~~v~~~~~~~~~~~~~a~~l~~~a~~~~~ 176 (223)
.+| +.+..+|++..+++ .++| +|||||||||++++++++.+++...... .++.++++.|++.|..
T Consensus 178 ~~~---------~~i~~~p~~~~~~~~~~~d-~ill~SDGv~~~l~~~~i~~~~~~~~~~-~~~~~~~~~l~~~a~~--- 243 (255)
T smart00332 178 FLK---------PYVSAEPDVTVVELTEKDD-FLILASDGLWDVLSNQEVVDIVRKHLSK-SDPEEAAKRLIDLALA--- 243 (255)
T ss_pred hhc---------CCeEeeeEEEEEEecCCCc-EEEEECCccccCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHH---
Confidence 865 55678899999996 7878 7889999999999999999999875322 2589999999999998
Q ss_pred CCCCCCCeeEEEE
Q 027460 177 GGEGCDNMTMILV 189 (223)
Q Consensus 177 ~~~~~DN~Tvivi 189 (223)
++..||+|++|+
T Consensus 244 -~~~~Dn~T~ivv 255 (255)
T smart00332 244 -RGSKDNITVIVV 255 (255)
T ss_pred -cCCCCCeEEEEC
Confidence 789999999985
No 10
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.96 E-value=5.6e-28 Score=201.01 Aligned_cols=160 Identities=48% Similarity=0.768 Sum_probs=141.1
Q ss_pred CCCCCCcceEEEEEEECCeEEEEEeccccEEEEeCCeeeeCCCCCCCCcHHHHHHHHHhCCeEeecccCCccccccccCC
Q 027460 17 FHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGD 96 (223)
Q Consensus 17 ~~~~~~GsT~~~~~i~~~~l~i~~vGDSr~~l~~~~~~~~lt~dH~~~~~~e~~ri~~~~~~~~~~r~~~~~~ltr~lG~ 96 (223)
.....+|||++++++.++.++++|+||||+|++++++++++|.||++.+..++.|+...++.+...+.++...+||+||+
T Consensus 94 ~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~~~~~~~~~t~~lG~ 173 (254)
T cd00143 94 PDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVSNGRVPGVLAVTRALGD 173 (254)
T ss_pred cCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEEeCEEcCceeeccccCC
Confidence 34567999999999999999999999999999999999999999999998999999999988766666777799999999
Q ss_pred hhhhhcCCCCcccceeeecCcceEEEe-cCCCeEEEEEcCCCccCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCC
Q 027460 97 VEFKLNKSLPAEKQIVTANPDISTIEL-CDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPS 175 (223)
Q Consensus 97 ~~~k~~~~~~~~~~~v~~~p~i~~~~l-~~~d~~lvL~SDGl~d~l~~~~i~~~v~~~~~~~~~~~~~a~~l~~~a~~~~ 175 (223)
..+| +.+..+|++..+++ +++| +|+|||||||++++++++.+++.....+ .++.++|+.|++.|..
T Consensus 174 ~~~~---------~~~~~~~~~~~~~l~~~~d-~ill~SDG~~~~l~~~~i~~~~~~~~~~-~~~~~~a~~l~~~a~~-- 240 (254)
T cd00143 174 FDLK---------PGVSAEPDVTVVKLTEDDD-FLILASDGLWDVLSNQEAVDIVRSELAK-EDLQEAAQELVDLALR-- 240 (254)
T ss_pred cccc---------CCEEcCCeEEEEEeCCCCc-EEEEECCCCeeccChHHHHHHHHHHhcc-cCHHHHHHHHHHHHHh--
Confidence 9765 33478899999999 8888 7889999999999999999999874211 2799999999999998
Q ss_pred CCCCCCCCeeEEEEEc
Q 027460 176 AGGEGCDNMTMILVQF 191 (223)
Q Consensus 176 ~~~~~~DN~Tvivi~~ 191 (223)
.++.||+|++++++
T Consensus 241 --~~~~Dn~t~i~~~~ 254 (254)
T cd00143 241 --RGSHDNITVVVVRL 254 (254)
T ss_pred --CCCCCCEEEEEEeC
Confidence 77899999999875
No 11
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.96 E-value=2.1e-28 Score=226.54 Aligned_cols=159 Identities=26% Similarity=0.324 Sum_probs=122.4
Q ss_pred CCCCCcceEEEEEEECCeEEEEEeccccEEEEe-CCeeeeCCCCCCCCcHHHHHHHHHhCCeEeecccCCccccccccCC
Q 027460 18 HGPTSGSTACVAIIRDKQLVVANAGDSRCVLSR-KGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGD 96 (223)
Q Consensus 18 ~~~~~GsT~~~~~i~~~~l~i~~vGDSr~~l~~-~~~~~~lt~dH~~~~~~e~~ri~~~~~~~~~~r~~~~~~ltr~lG~ 96 (223)
...+||||++++++.++++|++||||||+|+++ +|++.+||+||++.+.+.+.++.. .. ...+++...+||+||+
T Consensus 480 ~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~lv~~Gi~~-~~---a~~~p~~~~LTrALG~ 555 (645)
T PRK14559 480 GSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQREIQRGVEP-QI---AYARPDAYQLTQALGP 555 (645)
T ss_pred cCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHHHHHHhCCCH-HH---HhcCcccceeeeccCC
Confidence 445699999999999999999999999999985 689999999999877655554321 11 1112345599999998
Q ss_pred hhhhhcCCCCcccceeeecCcceEEEecCCCeEEEEEcCCCccC-CCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCC
Q 027460 97 VEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDC-LSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPS 175 (223)
Q Consensus 97 ~~~k~~~~~~~~~~~v~~~p~i~~~~l~~~d~~lvL~SDGl~d~-l~~~~i~~~v~~~~~~~~~~~~~a~~l~~~a~~~~ 175 (223)
...+ ..+|++..+.+.++| +||||||||||+ +.+..+.+.+...+....++.+++++|++.|+.
T Consensus 556 ~~~~------------~l~Pdi~~~~L~~gD-~lLLCSDGL~D~~~ve~~~~~~l~~il~~~~~l~~aa~~Li~~Al~-- 620 (645)
T PRK14559 556 RDNS------------AIQPDIQFLEIEEDT-LLLLCSDGLSDNDLLETHWQTHLLPLLSSSANLDQGLNKLIDLANQ-- 620 (645)
T ss_pred CCCC------------cccceEEEEEcCCCC-EEEEECCCCCCCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--
Confidence 7533 468999999999988 777999999994 333333333333343456899999999999998
Q ss_pred CCCCCCCCeeEEEEEcCCCCCC
Q 027460 176 AGGEGCDNMTMILVQFKNASNN 197 (223)
Q Consensus 176 ~~~~~~DN~Tvivi~~~~~~~~ 197 (223)
+++.||+|+||++++..+..
T Consensus 621 --~gg~DNITvIvV~l~~~p~~ 640 (645)
T PRK14559 621 --YNGHDNITAILVRLKVRPQL 640 (645)
T ss_pred --cCCCCcEEEEEEEeccCCCC
Confidence 88999999999999865443
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.91 E-value=6.3e-24 Score=178.68 Aligned_cols=177 Identities=27% Similarity=0.446 Sum_probs=144.1
Q ss_pred CCCCCCCCcceEEEEEEECCeEEEEEeccccEEEEeCCeeeeCCCCCCCCcHHHHHHHHHhCC---------eEe-----
Q 027460 15 SDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGG---------FIQ----- 80 (223)
Q Consensus 15 ~~~~~~~~GsT~~~~~i~~~~l~i~~vGDSr~~l~~~~~~~~lt~dH~~~~~~e~~ri~~~~~---------~~~----- 80 (223)
.+.-..-+|||+++++..-+++|++|.||||++++|++++++|+.+.++ +.||+|+...+- +-.
T Consensus 239 r~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTP--etERqRlQ~Laf~~PeLlgneFtrLEfpr 316 (493)
T KOG1323|consen 239 RQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTP--ETERQRLQELAFRNPELLGNEFTRLEFPR 316 (493)
T ss_pred HHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCc--HHHHHHHHHHhhcChHhhcccccceeccc
Confidence 3444556899999999999999999999999999999999999999998 567888765531 000
Q ss_pred -----------------------------------------ecccCCccccccccCChhhhhcCCCCcccceeeecCcce
Q 027460 81 -----------------------------------------VGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDIS 119 (223)
Q Consensus 81 -----------------------------------------~~r~~~~~~ltr~lG~~~~k~~~~~~~~~~~v~~~p~i~ 119 (223)
..|+...+.+||.|||..+|.......-+|++++.|++.
T Consensus 317 Rl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lkv~dsnl~iKPFLssvPeV~ 396 (493)
T KOG1323|consen 317 RLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLKVVDSNLSIKPFLSSVPEVR 396 (493)
T ss_pred ccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcceeeeecCCcccchhhhcCCeeE
Confidence 455667889999999999998888888889999999999
Q ss_pred EEEecC----CCeEEEEEcCCCccCCCHHHHHHHHHHHhcCCC--CH---HHHHHHHHHHhhc-----CCC----CCCCC
Q 027460 120 TIELCD----DDEFLVIACDGIWDCLSSQELVDFVRDQLTNET--KL---SVICEKVFDRCLA-----PSA----GGEGC 181 (223)
Q Consensus 120 ~~~l~~----~d~~lvL~SDGl~d~l~~~~i~~~v~~~~~~~~--~~---~~~a~~l~~~a~~-----~~~----~~~~~ 181 (223)
..++.. .|+++||+|||+||++++++++.++.+.+.... ++ ..+++.|+..|.. .|. +-++.
T Consensus 397 V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~aaqdlva~arg~~k~rgWr~~n~~lgSg 476 (493)
T KOG1323|consen 397 VYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQAAQDLVAAARGQQKDRGWRMNNGGLGSG 476 (493)
T ss_pred EEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhcCccCCCceeccCCCcCCC
Confidence 887764 234899999999999999999999999887543 23 3677788877753 343 55789
Q ss_pred CCeeEEEEEcCC
Q 027460 182 DNMTMILVQFKN 193 (223)
Q Consensus 182 DN~Tvivi~~~~ 193 (223)
|||||.||-+..
T Consensus 477 DDIsVfVIPL~~ 488 (493)
T KOG1323|consen 477 DDISVFVIPLKY 488 (493)
T ss_pred CceEEEEEeccC
Confidence 999999998875
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.79 E-value=3.3e-18 Score=143.68 Aligned_cols=138 Identities=25% Similarity=0.443 Sum_probs=106.4
Q ss_pred CCCCcceEEEEEEE--CCeEEEEEeccccEEEEeCCeeeeCCCCCCCCcHHHHHHHHHhCCeEeecccCCccccc-----
Q 027460 19 GPTSGSTACVAIIR--DKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLA----- 91 (223)
Q Consensus 19 ~~~~GsT~~~~~i~--~~~l~i~~vGDSr~~l~~~~~~~~lt~dH~~~~~~e~~ri~~~~~~~~~~r~~~~~~lt----- 91 (223)
...++||++++.++ +++||++|+|||.+.++|+|++++.|..+.+. + |--++++
T Consensus 164 ~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~-------------F------N~PyQLs~~p~~ 224 (330)
T KOG1379|consen 164 PIVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHY-------------F------NTPYQLSSPPEG 224 (330)
T ss_pred CCCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheec-------------c------CCceeeccCCcc
Confidence 34588999999998 88999999999999999999999998865431 0 1111111
Q ss_pred --cccCChhhhhcCCCCcccceeeecCcceEEEecCCCeEEEEEcCCCccCCCHHHHHHHHHHHhc-CCCCHHHHHHHHH
Q 027460 92 --RAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLT-NETKLSVICEKVF 168 (223)
Q Consensus 92 --r~lG~~~~k~~~~~~~~~~~v~~~p~i~~~~l~~~d~~lvL~SDGl~d~l~~~~i~~~v~~~~~-~~~~~~~~a~~l~ 168 (223)
.+++|. ....+...+.+++|| +|||+|||+||++.+++|..++..... ....++.+|++|+
T Consensus 225 ~~~~~~d~---------------p~~ad~~~~~v~~GD-vIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia 288 (330)
T KOG1379|consen 225 YSSYISDV---------------PDSADVTSFDVQKGD-VIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIA 288 (330)
T ss_pred ccccccCC---------------ccccceEEEeccCCC-EEEEecccccccccHHHHHHHHHHhhccccccHHHHHHHHH
Confidence 123333 244678899999999 888999999999999999999987665 5678999999999
Q ss_pred HHhhc-------------------CCCCCCCCCCeeEEEEEc
Q 027460 169 DRCLA-------------------PSAGGEGCDNMTMILVQF 191 (223)
Q Consensus 169 ~~a~~-------------------~~~~~~~~DN~Tvivi~~ 191 (223)
+.|.. ....+|+.|||||+|..+
T Consensus 289 ~~Ar~ls~d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~v 330 (330)
T KOG1379|consen 289 EKARELSRDPKFQSPFAQAAREHGFKAYGGKPDDITVVLSSV 330 (330)
T ss_pred HHHHHhccCcCcCChHHHHHHHhCcccCCCCcccEEEEEecC
Confidence 99864 111356889999999753
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.73 E-value=9.7e-18 Score=157.02 Aligned_cols=172 Identities=27% Similarity=0.409 Sum_probs=148.0
Q ss_pred CchhhHHhhhcCCCCCCCCCCCcceEEEEEEECC--------eEEEEEeccccEEEEeCCeeeeCCCCCCC-CcHHHHHH
Q 027460 1 MSDFFFVAFLEGPHSDFHGPTSGSTACVAIIRDK--------QLVVANAGDSRCVLSRKGQALNLSKDHKP-DLEVEKDR 71 (223)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~GsT~~~~~i~~~--------~l~i~~vGDSr~~l~~~~~~~~lt~dH~~-~~~~e~~r 71 (223)
|++.|..-.++. ...+..-|..++.+.+..+ .+.+||+|+|.+++.++|+-.++|+-... .+.+|.+|
T Consensus 591 mr~~fl~~~rkl---g~~g~~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~R 667 (1081)
T KOG0618|consen 591 MRNTFLRLNRKL---GEEGQVLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKR 667 (1081)
T ss_pred HHHHHHHHhhhh---hhhhccccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHHH
Confidence 344555444432 4455567777777777644 58999999999999999999998886543 48899999
Q ss_pred HHHhCCeEe-ecccCCccccccccCChhhhhcCCCCcccceeeecCcceEEEecCCCeEEEEEcCCCccCCCHHHHHHHH
Q 027460 72 ILKAGGFIQ-VGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFV 150 (223)
Q Consensus 72 i~~~~~~~~-~~r~~~~~~ltr~lG~~~~k~~~~~~~~~~~v~~~p~i~~~~l~~~d~~lvL~SDGl~d~l~~~~i~~~v 150 (223)
|...++++. .++++|+...||++|.+... |.+.+.|++....|.+.|+|||||+-++|++++-+++.+.+
T Consensus 668 I~~~~g~i~ed~k~ngvt~~tR~iG~~~l~---------P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~v 738 (1081)
T KOG0618|consen 668 IVDSKGFITEDNKLNGVTSSTRAIGPFSLF---------PHVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAV 738 (1081)
T ss_pred HHHhcCeecCCCeeeceeeeeeeccccccc---------ccccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHH
Confidence 999999999 99999999999999999764 67899999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHhhcCCCCCCCCCCeeEEEEEcC
Q 027460 151 RDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFK 192 (223)
Q Consensus 151 ~~~~~~~~~~~~~a~~l~~~a~~~~~~~~~~DN~Tvivi~~~ 192 (223)
++ ..+|-.+|++|++.|++ -|+.||++|+|+++.
T Consensus 739 Rn----~~dpL~AAkKL~d~AqS----Ygc~~nv~vlVv~l~ 772 (1081)
T KOG0618|consen 739 RN----VEDPLLAAKKLCDLAQS----YGCAENVSVLVVRLN 772 (1081)
T ss_pred hc----CCchHHHHHHHHHHHHh----cccccCeeEEEEEee
Confidence 86 57899999999999999 899999999999975
No 15
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.47 E-value=7.6e-13 Score=106.24 Aligned_cols=108 Identities=21% Similarity=0.293 Sum_probs=85.4
Q ss_pred CCCCcceEEEEEE--ECCeEEEEEeccccEEEEe-CCeeeeCCCCCCCCcHHHHHHHHHhCCeEeecccCCccccccccC
Q 027460 19 GPTSGSTACVAII--RDKQLVVANAGDSRCVLSR-KGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIG 95 (223)
Q Consensus 19 ~~~~GsT~~~~~i--~~~~l~i~~vGDSr~~l~~-~~~~~~lt~dH~~~~~~e~~ri~~~~~~~~~~r~~~~~~ltr~lG 95 (223)
...+|+|++++++ ..++++++|+||+|+|+++ ++...+++.+. ++.+|
T Consensus 82 ~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~-----------------------------~~~lG 132 (193)
T smart00331 82 EDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDL-----------------------------GAPLG 132 (193)
T ss_pred CCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCC-----------------------------Cceee
Confidence 3458999999998 5788999999999999998 66555555542 23456
Q ss_pred ChhhhhcCCCCcccceeeecCcceEEEecCCCeEEEEEcCCCccCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 027460 96 DVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCL 172 (223)
Q Consensus 96 ~~~~k~~~~~~~~~~~v~~~p~i~~~~l~~~d~~lvL~SDGl~d~l~~~~i~~~v~~~~~~~~~~~~~a~~l~~~a~ 172 (223)
... ..++++..+.+.++| .|+|+|||+++.++.+++.+++.+.. ..+++++++++++.++
T Consensus 133 ~~~--------------~~~~~~~~~~l~~gd-~l~l~TDGl~e~~~~~~l~~~l~~~~--~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 133 LEP--------------DVEVDVRELTLEPGD-LLLLYTDGLTEARNPERLEELLEELL--GSPPAEIAQRILEELL 192 (193)
T ss_pred eCC--------------CCcceeEEEeeCCCC-EEEEECCCccccCChHHHHHHHHHhc--CCCHHHHHHHHHHHHh
Confidence 543 244678889999999 67799999999999999999998753 4578899999888754
No 16
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.34 E-value=1.5e-12 Score=106.09 Aligned_cols=104 Identities=29% Similarity=0.485 Sum_probs=61.3
Q ss_pred CCCCCCCcceEEEEEEECCeEEEEEeccccEEE-EeCCeeeeCCCCCCCCcHHHHHHHHHhCCeEeecccCCcccccccc
Q 027460 16 DFHGPTSGSTACVAIIRDKQLVVANAGDSRCVL-SRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAI 94 (223)
Q Consensus 16 ~~~~~~~GsT~~~~~i~~~~l~i~~vGDSr~~l-~~~~~~~~lt~dH~~~~~~e~~ri~~~~~~~~~~r~~~~~~ltr~l 94 (223)
......++||++++++.++.++++|+||||+|+ .+++++.+++.+|+. +.. ..++.+
T Consensus 91 ~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~----~~~------------------~~~~~~ 148 (212)
T PF13672_consen 91 DLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSG----EYP------------------NQTRSL 148 (212)
T ss_dssp SGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BH----HHH------------------HCTTSC
T ss_pred cccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccc----hhh------------------hhhhcc
Confidence 445667899999999999999999999999975 579999999999972 111 113333
Q ss_pred CChhhhhcCCCCcccceeeecCcceEEEecCCCeEEEEEcCCCccCCCHHH-HHHHHHHHhc
Q 027460 95 GDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQE-LVDFVRDQLT 155 (223)
Q Consensus 95 G~~~~k~~~~~~~~~~~v~~~p~i~~~~l~~~d~~lvL~SDGl~d~l~~~~-i~~~v~~~~~ 155 (223)
..... .....+..+++.++| .|+|||||||+.+...+ +..++.+.+.
T Consensus 149 ~~~~~-------------~~~~~~~~~~~~~~d-~ilL~SDG~~~~l~~~~~~~~~l~~~~~ 196 (212)
T PF13672_consen 149 TGDDP-------------EPDVQYGSIPLEEGD-VILLCSDGVWDNLRSYEDLEQFLKDLWN 196 (212)
T ss_dssp CHHCC-------------CTETEEEEEE--TT--EEEEE-HHHHTTS-HHHHHHHH------
T ss_pred Ccccc-------------ccCCeEEEEEcCCCC-EEEEECcCccccCCCHHHHHHHhhhccc
Confidence 32210 223466778888999 56699999999998654 7777766543
No 17
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.32 E-value=1.8e-11 Score=98.00 Aligned_cols=124 Identities=23% Similarity=0.341 Sum_probs=85.8
Q ss_pred CCcceEEEEEEE--CCeEEEEEeccccEEEEeC--CeeeeCCCCCCCCcHHHHHHHHHhCCeEeecccCCccccccccCC
Q 027460 21 TSGSTACVAIIR--DKQLVVANAGDSRCVLSRK--GQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGD 96 (223)
Q Consensus 21 ~~GsT~~~~~i~--~~~l~i~~vGDSr~~l~~~--~~~~~lt~dH~~~~~~e~~ri~~~~~~~~~~r~~~~~~ltr~lG~ 96 (223)
...+|++++.++ .+.++++|+|+++++++++ +....+..... .+|-
T Consensus 59 ~~~~t~~~~~~d~~~~~l~~~~aG~~~~l~~~~~~~~~~~~~~~~~------------------------------~lG~ 108 (193)
T PF07228_consen 59 NRYATACYAIIDPETGTLTYANAGHPPPLLLRPGGREIEQLESEGP------------------------------PLGI 108 (193)
T ss_dssp STTEEEEEEEEETTTTEEEEEEESSSEEEEEETTCTEEEEETCSSB------------------------------BCSS
T ss_pred cccceEEEEEecccceEEEEeCCCCCCEEEEeccccceeecccCcc------------------------------ceee
Confidence 578888888886 6679999999999999998 34444433221 1444
Q ss_pred hhhhhcCCCCcccceeeecCcceEEEecCCCeEEEEEcCCCccCCCHH-------HHHHHHHHHhcCCCCHHHHHHHHHH
Q 027460 97 VEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQ-------ELVDFVRDQLTNETKLSVICEKVFD 169 (223)
Q Consensus 97 ~~~k~~~~~~~~~~~v~~~p~i~~~~l~~~d~~lvL~SDGl~d~l~~~-------~i~~~v~~~~~~~~~~~~~a~~l~~ 169 (223)
.. ...+....+.+.+|| .|+|+|||++|....+ .+.+++.+. ...+++++++.+++
T Consensus 109 ~~--------------~~~~~~~~~~l~~gd-~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~ 171 (193)
T PF07228_consen 109 FE--------------DIDYQEQEIQLEPGD-RLLLYTDGLFEALNEDGEFFGEERLLELLDEN--RGLSPQEIIDALLE 171 (193)
T ss_dssp SC--------------TTCEEEEEEE--TTE-EEEEECHHHCTTTCHHCHHCCCHHHHHHHHCH--TTS-HHHHHHHHHH
T ss_pred ec--------------cccccceEEEecccc-EEEEeCCChhhccCCccchhHHHHHHHHHhhc--cCCCHHHHHHHHHH
Confidence 32 234456678999999 6779999999998433 445555543 34679999999998
Q ss_pred HhhcCCCCCCCCCCeeEEEEEcC
Q 027460 170 RCLAPSAGGEGCDNMTMILVQFK 192 (223)
Q Consensus 170 ~a~~~~~~~~~~DN~Tvivi~~~ 192 (223)
.+.. ..+....||+|++++++.
T Consensus 172 ~~~~-~~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 172 AIDR-FGKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp HHHH-HTTSSTSS-EEEEEEEE-
T ss_pred HHHH-hcCCCCCCceEEEEEEEC
Confidence 8876 113678899999999873
No 18
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.31 E-value=3.1e-11 Score=115.48 Aligned_cols=123 Identities=20% Similarity=0.319 Sum_probs=94.1
Q ss_pred CCcceEEEEEEE--CCeEEEEEeccccEEEEeCCeeeeCCCCCCCCcHHHHHHHHHhCCeEeecccCCccccccccCChh
Q 027460 21 TSGSTACVAIIR--DKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVE 98 (223)
Q Consensus 21 ~~GsT~~~~~i~--~~~l~i~~vGDSr~~l~~~~~~~~lt~dH~~~~~~e~~ri~~~~~~~~~~r~~~~~~ltr~lG~~~ 98 (223)
.+.+|+.+++++ .+++.++++|+++.|+.|++++.+++..+.| +|-..
T Consensus 634 ~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lP------------------------------lGil~ 683 (764)
T TIGR02865 634 EKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLP------------------------------IGILD 683 (764)
T ss_pred CeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCce------------------------------eEecc
Confidence 468999999996 6889999999999999999999888654322 23221
Q ss_pred hhhcCCCCcccceeeecCcceEEEecCCCeEEEEEcCCCccCCCHHH-----HHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 027460 99 FKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQE-----LVDFVRDQLTNETKLSVICEKVFDRCLA 173 (223)
Q Consensus 99 ~k~~~~~~~~~~~v~~~p~i~~~~l~~~d~~lvL~SDGl~d~l~~~~-----i~~~v~~~~~~~~~~~~~a~~l~~~a~~ 173 (223)
..+++....++.+|| +|||+|||++|..++.+ +.+++.+. ...+++++++.|++.+..
T Consensus 684 --------------~~~~~~~~~~L~~GD-~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~--~~~~p~ela~~Il~~a~~ 746 (764)
T TIGR02865 684 --------------EVDVELVRKKLKNGD-LIVMVSDGVLEGEKEVEGKVLWLVRKLKET--NTNDPEEIAEYLLEKAKE 746 (764)
T ss_pred --------------CCccceEEEEeCCCC-EEEEECCCCCcCCcccccHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHH
Confidence 245677888999999 67799999999876432 55555442 245799999999999886
Q ss_pred CCCCCCCCCCeeEEEEEc
Q 027460 174 PSAGGEGCDNMTMILVQF 191 (223)
Q Consensus 174 ~~~~~~~~DN~Tvivi~~ 191 (223)
.. ++...||+|++++++
T Consensus 747 ~~-~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 747 LR-SGKIKDDMTVIVAKV 763 (764)
T ss_pred hc-CCCCCCCeEEEEEEe
Confidence 43 234689999999986
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.34 E-value=1e-05 Score=71.58 Aligned_cols=124 Identities=17% Similarity=0.255 Sum_probs=95.1
Q ss_pred CcceEEEEEEE--CCeEEEEEeccccEEEEeCCe---eeeCCCCCCCCcHHHHHHHHHhCCeEeecccCCccccccccCC
Q 027460 22 SGSTACVAIIR--DKQLVVANAGDSRCVLSRKGQ---ALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGD 96 (223)
Q Consensus 22 ~GsT~~~~~i~--~~~l~i~~vGDSr~~l~~~~~---~~~lt~dH~~~~~~e~~ri~~~~~~~~~~r~~~~~~ltr~lG~ 96 (223)
+-+|+...+++ .+.+.++++|=--.++++.+. +..+. .....+|-
T Consensus 231 ~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~~l~------------------------------~~g~piG~ 280 (367)
T COG2208 231 MFVTLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVEDLT------------------------------ALGLPIGL 280 (367)
T ss_pred cEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeEEcc------------------------------CCCceeee
Confidence 77888888886 678999999999999988654 34332 22334565
Q ss_pred hhhhhcCCCCcccceeeecCcceEEEecCCCeEEEEEcCCCcc-------CCCHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 027460 97 VEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWD-------CLSSQELVDFVRDQLTNETKLSVICEKVFD 169 (223)
Q Consensus 97 ~~~k~~~~~~~~~~~v~~~p~i~~~~l~~~d~~lvL~SDGl~d-------~l~~~~i~~~v~~~~~~~~~~~~~a~~l~~ 169 (223)
.. ...+.+....+++|| .||+.|||+.+ .+..+...+++.+ ....+++++++.+.+
T Consensus 281 ~~--------------~~~~~~~~~~l~~gd-~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~i~~ 343 (367)
T COG2208 281 LP--------------DYQYEVASLQLEPGD-LLVLYTDGVTEARNSDGEFFGLERLLKILGR--LLGQPAEEILEAILE 343 (367)
T ss_pred cC--------------CccchheeEEecCCC-EEEEEcCCeeeeecCCccEecHHHHHHHHHH--HhCCCHHHHHHHHHH
Confidence 54 466778889999999 78899999999 5677788888775 235688999999988
Q ss_pred HhhcCCCCCCCCCCeeEEEEEcC
Q 027460 170 RCLAPSAGGEGCDNMTMILVQFK 192 (223)
Q Consensus 170 ~a~~~~~~~~~~DN~Tvivi~~~ 192 (223)
............||+|++++++.
T Consensus 344 ~l~~~~~~~~~~DDiTll~lk~~ 366 (367)
T COG2208 344 SLEELQGDQIQDDDITLLVLKVK 366 (367)
T ss_pred HHHHhhCCccccCceEEEEEEec
Confidence 87765444567788999999975
No 20
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=53.07 E-value=8.3 Score=25.96 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=13.3
Q ss_pred CCCeEEEEEcCCCccCCCH
Q 027460 125 DDDEFLVIACDGIWDCLSS 143 (223)
Q Consensus 125 ~~d~~lvL~SDGl~d~l~~ 143 (223)
+|.++| +++||+|=.+..
T Consensus 26 ~G~Rll-va~nGv~lEv~r 43 (72)
T PF09436_consen 26 PGHRLL-VASNGVFLEVRR 43 (72)
T ss_pred CCcEEE-EecCcEEEEEec
Confidence 677555 999999976543
No 21
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=52.42 E-value=20 Score=30.61 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=20.4
Q ss_pred CCCCCCcceEEEEEEECCeEEEEEeccc
Q 027460 17 FHGPTSGSTACVAIIRDKQLVVANAGDS 44 (223)
Q Consensus 17 ~~~~~~GsT~~~~~i~~~~l~i~~vGDS 44 (223)
..+..+|||.+.+ +.++.+|..|+|-+
T Consensus 127 tsG~LSGCT~i~A-~K~~~~y~~HtGk~ 153 (281)
T PF05785_consen 127 TSGALSGCTMIYA-RKDNYFYAYHTGKS 153 (281)
T ss_dssp E---BSS-EEEEE-EETTEEEEEEEEES
T ss_pred eCCccCCCEEEEE-EcCCeEEEEEcCCC
Confidence 4677899999888 78899999999987
No 22
>COG5518 Bacteriophage capsid portal protein [General function prediction only]
Probab=41.68 E-value=27 Score=31.15 Aligned_cols=116 Identities=15% Similarity=0.155 Sum_probs=63.6
Q ss_pred EEECCeEEEEEeccccEEEEeCCeeeeCCCCCCCCcHHHHHHHHHhCCeEeecccCCccccccccCChhhhhcCCCCccc
Q 027460 30 IIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEK 109 (223)
Q Consensus 30 ~i~~~~l~i~~vGDSr~~l~~~~~~~~lt~dH~~~~~~e~~ri~~~~~~~~~~r~~~~~~ltr~lG~~~~k~~~~~~~~~ 109 (223)
+|+.+++|+-..||.|.|=++.|+-+..++-..+.++..-..|- .|.+-+-|.||..---.. ..
T Consensus 189 mID~k~v~FkeyGdpr~~d~~~G~yv~~~~le~~ane~ih~kIg-----------s~~YG~Prwig~ivslyg-ar---- 252 (492)
T COG5518 189 MIDLKTVWFKEYGDPRPYDFTTGNYVSMFHLEEPANEDIHQKIG-----------SGAYGLPRWIGAIVSLYG-AR---- 252 (492)
T ss_pred eeccceEEEEecCCCcceeeccCccchhhhhhcchhhhHHHhhc-----------ccccCchHHHHHHHHHHh-hh----
Confidence 47788999999999999999999766655555554443333221 122344444444311000 00
Q ss_pred ceeeecCcceEEEecCC--CeEEEEEcCCCccCCCHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 027460 110 QIVTANPDISTIELCDD--DEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFD 169 (223)
Q Consensus 110 ~~v~~~p~i~~~~l~~~--d~~lvL~SDGl~d~l~~~~i~~~v~~~~~~~~~~~~~a~~l~~ 169 (223)
.--+....-+.+| -.++|..+||..+.=+-.++.+.+.. -+.+..+-+.|+-
T Consensus 253 ----kAeeln~~YfknGrH~paai~~~~g~l~e~~y~~L~eyMk~----~~g~eNa~~flm~ 306 (492)
T COG5518 253 ----KAEELNRMYFKNGRHAPAAIYMTDGALSEEDYNNLREYMKS----AKGPENARNFLMY 306 (492)
T ss_pred ----hHHHHHHHHHhcCccCceEEEecccccchHHHHHHHHHHhh----cCCchhhhhheee
Confidence 0001111112222 23788999999776666666666655 3455555555443
No 23
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=37.57 E-value=2.2e+02 Score=23.83 Aligned_cols=31 Identities=26% Similarity=0.493 Sum_probs=23.4
Q ss_pred CCeEEEEEeccccEEE--EeCCeeeeCCCCCCC
Q 027460 33 DKQLVVANAGDSRCVL--SRKGQALNLSKDHKP 63 (223)
Q Consensus 33 ~~~l~i~~vGDSr~~l--~~~~~~~~lt~dH~~ 63 (223)
.+++...---||.+.| +|+|+.+|.=..|+.
T Consensus 242 sgrll~sg~~dssc~lydirg~r~iq~f~phsa 274 (350)
T KOG0641|consen 242 SGRLLASGHADSSCMLYDIRGGRMIQRFHPHSA 274 (350)
T ss_pred CcceeeeccCCCceEEEEeeCCceeeeeCCCcc
Confidence 5677777777888777 589999888777763
No 24
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=35.05 E-value=73 Score=16.73 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=16.2
Q ss_pred EEEECCeEEEEEeccccEEEE
Q 027460 29 AIIRDKQLVVANAGDSRCVLS 49 (223)
Q Consensus 29 ~~i~~~~l~i~~vGDSr~~l~ 49 (223)
++-.++.+|++-.|..|+..+
T Consensus 8 av~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 8 AVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEETTSEEEEEECCCTEEEEE
T ss_pred EEeCCCCEEEEECCCCEEEEC
Confidence 334788999999999887654
No 25
>PRK15322 invasion protein OrgB; Provisional
Probab=32.16 E-value=1.8e+02 Score=23.71 Aligned_cols=52 Identities=13% Similarity=0.382 Sum_probs=37.4
Q ss_pred EEecCCCeEEEEEcCCCccCCCHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhhc
Q 027460 121 IELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETK-LSVICEKVFDRCLA 173 (223)
Q Consensus 121 ~~l~~~d~~lvL~SDGl~d~l~~~~i~~~v~~~~~~~~~-~~~~a~~l~~~a~~ 173 (223)
+..-.+.+|| +|||-..-.+++++..+...+.+....+ ....|+.|-+.+++
T Consensus 142 i~yhd~~rFV-~~~g~qIaEFsPq~~v~~a~~~l~~~~d~~~~~~r~ls~~~l~ 194 (210)
T PRK15322 142 LKYHQEQRFI-MSCGDQIAEFSPEQFVETAVGVIKHHLDELPQDCRTISDNAIN 194 (210)
T ss_pred EEEcCCCceE-EEeCCchhccCHHHHHHHHHHHHHhCccchHHHHHHHhHHHHH
Confidence 5556667677 8888887888999888887766654444 67778777776654
No 26
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=29.59 E-value=38 Score=24.13 Aligned_cols=31 Identities=19% Similarity=0.440 Sum_probs=23.1
Q ss_pred EEecCCCeEEEEEcCCCccCCCHHHHHHHHHH
Q 027460 121 IELCDDDEFLVIACDGIWDCLSSQELVDFVRD 152 (223)
Q Consensus 121 ~~l~~~d~~lvL~SDGl~d~l~~~~i~~~v~~ 152 (223)
.-+.++|. |+|+.||++-.+...+.-+-++.
T Consensus 20 ~~l~~~D~-vlL~qdGV~aAl~~~~~~~sl~~ 50 (96)
T COG2168 20 RLLTEGDA-VLLLQDGVYAALKGNRYLASLRE 50 (96)
T ss_pred HHhcccCe-EEEEcccchhhhcCcHHHHHHhc
Confidence 34678885 55999999988877766666555
No 27
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=27.23 E-value=2.6e+02 Score=20.62 Aligned_cols=56 Identities=7% Similarity=0.143 Sum_probs=40.5
Q ss_pred ceeeecCcceEEEecCCCeEEEEEcCCCcc-------CCCHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 027460 110 QIVTANPDISTIELCDDDEFLVIACDGIWD-------CLSSQELVDFVRDQLTNETKLSVICEKVF 168 (223)
Q Consensus 110 ~~v~~~p~i~~~~l~~~d~~lvL~SDGl~d-------~l~~~~i~~~v~~~~~~~~~~~~~a~~l~ 168 (223)
..+...|++..++.+.++.|.|.+..-.-+ .+++++|.-++.+. +-+-.++-+.|.
T Consensus 37 ~~Vi~~P~V~~m~~~g~~tY~I~Ge~~~e~~~~~~~~~i~~edI~lv~~q~---gvs~~~A~~AL~ 99 (115)
T PRK06369 37 EIVFENPQVTVMDAQGQKTYQIVGEPEEVEKEAEKEVEIPEEDIELVAEQT---GVSEEEARKALE 99 (115)
T ss_pred EEEEcCCeEEEEecCCCcEEEEEeccEEeeccccccCCCCHHHHHHHHHHH---CcCHHHHHHHHH
Confidence 456889999999998888899888877754 47888887777664 344445544443
No 28
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=26.49 E-value=1.3e+02 Score=19.42 Aligned_cols=27 Identities=7% Similarity=0.255 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 027460 141 LSSQELVDFVRDQLTNETKLSVICEKVFDR 170 (223)
Q Consensus 141 l~~~~i~~~v~~~~~~~~~~~~~a~~l~~~ 170 (223)
-++++|..++.++ +-+|.+++++|+.+
T Consensus 19 hse~eIya~L~ec---nMDpnea~qrLL~q 45 (60)
T PF06972_consen 19 HSEEEIYAMLKEC---NMDPNEAVQRLLSQ 45 (60)
T ss_pred CCHHHHHHHHHHh---CCCHHHHHHHHHhc
Confidence 5789999999887 56899999999873
No 29
>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]
Probab=26.40 E-value=2e+02 Score=26.99 Aligned_cols=73 Identities=10% Similarity=0.195 Sum_probs=39.5
Q ss_pred EecCCCeEEEEEcCCCccCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCCCCCeeEEEEEcCCCCCCCC--
Q 027460 122 ELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKNASNNGP-- 199 (223)
Q Consensus 122 ~l~~~d~~lvL~SDGl~d~l~~~~i~~~v~~~~~~~~~~~~~a~~l~~~a~~~~~~~~~~DN~Tvivi~~~~~~~~~~-- 199 (223)
.+.+|| .|+-..|==|+++++++...++++. .. +.. =+++.|++-..+.+.+-
T Consensus 295 RIe~GD-MiLQVNevsFENmSNd~AVrvLREa------------------V~----~~g--Pi~ltvAk~~DP~~q~~fT 349 (626)
T KOG3571|consen 295 RIEPGD-MILQVNEVSFENMSNDQAVRVLREA------------------VS----RPG--PIKLTVAKCWDPNPQSYFT 349 (626)
T ss_pred ccCccc-eEEEeeecchhhcCchHHHHHHHHH------------------hc----cCC--CeEEEEeeccCCCCccccc
Confidence 344566 5555666666667776666555442 22 111 17777777654333111
Q ss_pred -CCCCCCCchhhhhhhhcccC
Q 027460 200 -SAAEQPPSDQQSKLASSSAG 219 (223)
Q Consensus 200 -~~~~~~~~~~~~~~~~~~~~ 219 (223)
|...+.-++..+.|+++.++
T Consensus 350 ipr~epvrPIDp~awv~ht~a 370 (626)
T KOG3571|consen 350 IPRGEPVRPIDPAAWVSHTQA 370 (626)
T ss_pred CCCCCcCCcCCHHHHHHHHHH
Confidence 33344555666777777665
No 30
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=26.07 E-value=2.5e+02 Score=22.65 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=32.1
Q ss_pred CCeEEEEEcCCCcc-----------CCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 027460 126 DDEFLVIACDGIWD-----------CLSSQELVDFVRDQLTNETKLSVICEKVFDRCLA 173 (223)
Q Consensus 126 ~d~~lvL~SDGl~d-----------~l~~~~i~~~v~~~~~~~~~~~~~a~~l~~~a~~ 173 (223)
+|. ++..|.|||. +|.++..=+.+..-.....-|.++|+.|++.-.+
T Consensus 71 DDT-vLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~ 128 (237)
T COG3700 71 DDT-VLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQR 128 (237)
T ss_pred CCe-eEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHh
Confidence 354 4488888885 4555655556655444556789999999987655
No 31
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=25.77 E-value=1.1e+02 Score=25.65 Aligned_cols=36 Identities=14% Similarity=0.327 Sum_probs=25.3
Q ss_pred HHHHHHHhhcCCCCCCCCCCeeEEEEEcCCCCCCCCCCCC
Q 027460 164 CEKVFDRCLAPSAGGEGCDNMTMILVQFKNASNNGPSAAE 203 (223)
Q Consensus 164 a~~l~~~a~~~~~~~~~~DN~Tvivi~~~~~~~~~~~~~~ 203 (223)
.++|+..++. +-.+||+||+...-.......++++.
T Consensus 167 IK~LV~nSv~----gL~YenISVVl~~~~~~~~~~~~~~~ 202 (246)
T COG4669 167 IKRLVANSVP----GLQYENISVVLVPASDSDPAIPGPRA 202 (246)
T ss_pred HHHHHHhccC----CCchhceEEEEeecccccccccCccc
Confidence 4556666666 88999999999887766655444333
No 32
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=20.65 E-value=1.3e+02 Score=25.28 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=27.7
Q ss_pred cCcceEEEecC--CCeEEEEEcCCCccCCCHHHHHHHHHHHh
Q 027460 115 NPDISTIELCD--DDEFLVIACDGIWDCLSSQELVDFVRDQL 154 (223)
Q Consensus 115 ~p~i~~~~l~~--~d~~lvL~SDGl~d~l~~~~i~~~v~~~~ 154 (223)
.|...-+.+.. ....| .-|+|+.+.++++|+..++.+.+
T Consensus 125 ~~~~NAFa~g~~~~~~~V-~vt~gLl~~l~~dEl~aVlaHEl 165 (302)
T COG0501 125 TPQPNAFALGGGPKNGRV-VVTTGLLDLLNDDELEAVLAHEL 165 (302)
T ss_pred CCCccceecCCCCCCeeE-EecHHHHhhCCHHHHHHHHHHHH
Confidence 34444444444 34445 89999999999999999887644
No 33
>TIGR03735 PRTRC_A PRTRC system protein A. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated protein A.
Probab=20.05 E-value=58 Score=26.26 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=30.2
Q ss_pred cCCCeEEEEEcCCCccCCCHHHHHHHHHH--Hhc---C------------CCCHHHHHHHHHHHhhc
Q 027460 124 CDDDEFLVIACDGIWDCLSSQELVDFVRD--QLT---N------------ETKLSVICEKVFDRCLA 173 (223)
Q Consensus 124 ~~~d~~lvL~SDGl~d~l~~~~i~~~v~~--~~~---~------------~~~~~~~a~~l~~~a~~ 173 (223)
++|.+|| +++||+|-.+...-+.-+..- ... + ..-+..+.+++++.|.+
T Consensus 24 ~~g~r~~-~a~~G~~lev~r~wl~~~~~~~~~~~~~~PYg~~~~~~~~~~g~Ip~~l~~~ii~hAr~ 89 (192)
T TIGR03735 24 KPGHRFI-VAADGVWREVRRPWLHAIQRVAPASPITVPYGAVEETLEFLCGPIPASLLEEFAEAARA 89 (192)
T ss_pred cCCcEEE-EecCcEEEEEecHHHHHHHHhcccccccccceeeeeeEEEecCCCCHHHHHHHHHHHHh
Confidence 4577665 999999987765544333211 110 0 12356778888888876
Done!