Query 027462
Match_columns 223
No_of_seqs 127 out of 2284
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 10:16:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027462.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027462hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0254 Predicted transporter 99.7 1.1E-15 2.3E-20 141.7 12.7 153 26-219 36-190 (513)
2 PRK10077 xylE D-xylose transpo 99.6 6.1E-15 1.3E-19 134.1 13.9 177 31-220 8-199 (479)
3 PRK14995 methyl viologen resis 99.6 2.1E-15 4.6E-20 139.0 8.4 160 33-221 4-167 (495)
4 COG2814 AraJ Arabinose efflux 99.6 1.1E-14 2.4E-19 130.2 12.6 128 36-211 14-141 (394)
5 TIGR00887 2A0109 phosphate:H+ 99.6 2.9E-14 6.2E-19 131.6 11.9 149 27-218 8-162 (502)
6 PRK10406 alpha-ketoglutarate t 99.6 4.3E-14 9.3E-19 127.9 12.4 173 27-220 14-203 (432)
7 TIGR00879 SP MFS transporter, 99.5 6.4E-14 1.4E-18 125.3 12.9 176 26-220 19-201 (481)
8 TIGR01299 synapt_SV2 synaptic 99.5 3.2E-14 7E-19 137.0 11.6 171 30-220 162-339 (742)
9 KOG0569 Permease of the major 99.5 1.5E-13 3.4E-18 126.1 13.8 153 27-213 3-158 (485)
10 TIGR02332 HpaX 4-hydroxyphenyl 99.5 5.2E-14 1.1E-18 126.9 10.0 162 36-220 9-173 (412)
11 TIGR00891 2A0112 putative sial 99.5 1E-13 2.3E-18 122.2 11.8 161 33-220 10-173 (405)
12 PRK03545 putative arabinose tr 99.5 1.3E-13 2.9E-18 122.7 12.2 125 87-220 41-168 (390)
13 PRK09556 uhpT sugar phosphate 99.5 7.8E-14 1.7E-18 127.5 10.6 144 33-196 27-178 (467)
14 PRK12307 putative sialic acid 99.5 1.5E-13 3.3E-18 123.2 12.1 154 38-220 21-177 (426)
15 PRK10642 proline/glycine betai 99.5 2.6E-13 5.5E-18 125.0 12.7 162 37-220 18-197 (490)
16 PRK11551 putative 3-hydroxyphe 99.5 3.1E-13 6.7E-18 120.5 12.0 146 32-197 12-160 (406)
17 PRK09705 cynX putative cyanate 99.5 2.9E-13 6.2E-18 121.2 11.4 121 58-196 30-152 (393)
18 PRK03893 putative sialic acid 99.5 4.4E-13 9.4E-18 122.6 11.4 159 33-220 18-179 (496)
19 TIGR00711 efflux_EmrB drug res 99.4 1.6E-13 3.4E-18 124.8 7.4 155 37-220 4-161 (485)
20 PRK10213 nepI ribonucleoside t 99.4 1.1E-12 2.5E-17 117.5 12.8 125 87-220 52-179 (394)
21 PRK15403 multidrug efflux syst 99.4 4.4E-13 9.6E-18 120.9 9.4 156 36-220 17-175 (413)
22 KOG0252 Inorganic phosphate tr 99.4 4.3E-13 9.3E-18 121.0 8.8 156 23-190 29-194 (538)
23 PRK10091 MFS transport protein 99.4 3.8E-13 8.2E-18 119.7 8.4 151 41-220 9-162 (382)
24 TIGR00890 2A0111 Oxalate/Forma 99.4 5.5E-13 1.2E-17 116.0 9.1 125 87-220 35-161 (377)
25 PRK11663 regulatory protein Uh 99.4 1.2E-12 2.7E-17 118.5 10.9 154 38-220 26-182 (434)
26 PRK10133 L-fucose transporter; 99.4 2.5E-12 5.4E-17 117.1 11.8 139 39-197 30-174 (438)
27 PRK09952 shikimate transporter 99.4 4E-12 8.6E-17 115.5 12.9 162 36-220 23-204 (438)
28 PRK10504 putative transporter; 99.4 1.3E-12 2.9E-17 118.9 9.2 150 42-220 17-169 (471)
29 PF00083 Sugar_tr: Sugar (and 99.4 1.2E-14 2.5E-19 131.4 -4.9 146 39-193 4-155 (451)
30 PRK03699 putative transporter; 99.4 5.2E-12 1.1E-16 112.8 12.2 153 40-220 12-167 (394)
31 PRK15075 citrate-proton sympor 99.4 4.8E-12 1E-16 114.6 11.4 139 36-194 16-171 (434)
32 PRK05122 major facilitator sup 99.4 1.1E-11 2.4E-16 110.3 13.3 114 86-199 47-171 (399)
33 TIGR00895 2A0115 benzoate tran 99.4 5.4E-12 1.2E-16 110.7 11.0 141 41-201 23-166 (398)
34 PRK12382 putative transporter; 99.4 2.3E-11 4.9E-16 108.2 14.9 113 86-198 47-170 (392)
35 TIGR00903 2A0129 major facilit 99.4 2.4E-12 5.2E-17 114.9 8.5 134 60-220 14-149 (368)
36 PLN00028 nitrate transmembrane 99.3 4.7E-12 1E-16 116.4 10.4 108 87-194 68-177 (476)
37 PRK03633 putative MFS family t 99.3 6.3E-12 1.4E-16 111.7 10.9 140 42-201 13-155 (381)
38 PF06609 TRI12: Fungal trichot 99.3 5.2E-12 1.1E-16 118.7 10.7 125 88-221 76-202 (599)
39 TIGR00892 2A0113 monocarboxyla 99.3 7.5E-12 1.6E-16 114.4 10.7 125 87-220 51-178 (455)
40 KOG1330 Sugar transporter/spin 99.3 1.9E-12 4.1E-17 116.9 6.6 139 35-193 33-174 (493)
41 PRK15402 multidrug efflux syst 99.3 1.4E-11 3E-16 110.2 12.0 150 30-199 8-160 (406)
42 TIGR00881 2A0104 phosphoglycer 99.3 4.9E-12 1.1E-16 110.1 8.8 129 46-194 6-137 (379)
43 TIGR00710 efflux_Bcr_CflA drug 99.3 1.1E-11 2.4E-16 108.8 10.6 132 48-199 18-152 (385)
44 TIGR00893 2A0114 d-galactonate 99.3 4.1E-12 8.9E-17 110.6 6.9 114 87-200 26-142 (399)
45 TIGR00885 fucP L-fucose:H+ sym 99.3 1.7E-11 3.6E-16 110.8 10.5 143 39-201 7-155 (410)
46 PRK15034 nitrate/nitrite trans 99.3 2.2E-11 4.7E-16 111.8 10.9 96 86-182 66-169 (462)
47 PF07690 MFS_1: Major Facilita 99.3 1.4E-11 3.1E-16 106.4 9.2 115 86-200 28-145 (352)
48 TIGR00898 2A0119 cation transp 99.3 1.1E-11 2.3E-16 113.9 8.5 114 83-196 117-236 (505)
49 cd06174 MFS The Major Facilita 99.3 4.7E-11 1E-15 102.5 11.3 115 87-201 31-148 (352)
50 KOG0255 Synaptic vesicle trans 99.3 1.5E-11 3.3E-16 113.8 8.5 78 86-163 114-191 (521)
51 TIGR00900 2A0121 H+ Antiporter 99.3 3E-11 6.5E-16 104.7 9.6 125 87-220 31-163 (365)
52 PRK11652 emrD multidrug resist 99.2 2.2E-11 4.7E-16 108.4 8.8 113 87-199 40-155 (394)
53 PRK11273 glpT sn-glycerol-3-ph 99.2 2.7E-11 5.9E-16 110.3 9.5 108 87-194 60-175 (452)
54 TIGR00894 2A0114euk Na(+)-depe 99.2 3.1E-11 6.6E-16 110.0 9.1 118 84-201 70-192 (465)
55 TIGR00886 2A0108 nitrite extru 99.2 7.7E-11 1.7E-15 103.1 11.2 110 86-195 33-145 (366)
56 KOG2615 Permease of the major 99.2 4.4E-11 9.6E-16 105.9 8.8 115 87-201 65-181 (451)
57 PRK09874 drug efflux system pr 99.2 9E-11 1.9E-15 104.3 11.0 109 91-199 55-165 (408)
58 PRK10473 multidrug efflux syst 99.2 1.5E-10 3.2E-15 103.0 11.4 123 58-198 24-149 (392)
59 PRK11043 putative transporter; 99.2 5.4E-11 1.2E-15 106.1 8.5 113 87-199 38-153 (401)
60 PTZ00207 hypothetical protein; 99.2 3.6E-10 7.8E-15 106.6 14.0 112 87-199 59-178 (591)
61 TIGR00806 rfc RFC reduced fola 99.2 2.1E-10 4.6E-15 105.1 11.9 112 86-198 57-172 (511)
62 TIGR00896 CynX cyanate transpo 99.2 8.4E-11 1.8E-15 103.2 8.9 122 59-199 22-145 (355)
63 TIGR00805 oat sodium-independe 99.1 2E-11 4.3E-16 116.3 3.5 156 43-218 41-257 (633)
64 KOG2532 Permease of the major 99.1 7.1E-11 1.5E-15 108.7 7.0 132 82-221 65-201 (466)
65 PRK11102 bicyclomycin/multidru 99.1 2.4E-10 5.2E-15 100.6 9.8 113 87-199 23-138 (377)
66 KOG2504 Monocarboxylate transp 99.1 2.1E-10 4.5E-15 106.7 9.6 154 26-202 40-196 (509)
67 PRK11195 lysophospholipid tran 99.1 3.1E-10 6.7E-15 101.8 10.3 110 87-199 35-147 (393)
68 TIGR00712 glpT glycerol-3-phos 99.1 2.7E-10 5.8E-15 103.3 9.9 126 87-220 58-190 (438)
69 TIGR00897 2A0118 polyol permea 99.1 8.6E-10 1.9E-14 98.8 11.4 114 87-200 45-166 (402)
70 COG2271 UhpC Sugar phosphate p 99.1 6E-10 1.3E-14 100.0 10.1 167 27-220 21-190 (448)
71 PRK11646 multidrug resistance 99.1 1.8E-09 3.9E-14 97.0 11.9 125 86-220 42-169 (400)
72 TIGR00899 2A0120 sugar efflux 99.1 7E-10 1.5E-14 97.2 8.9 126 86-220 29-160 (375)
73 KOG2325 Predicted transporter/ 99.0 3.5E-10 7.7E-15 103.7 6.8 164 26-210 28-199 (488)
74 PRK10054 putative transporter; 99.0 2.8E-09 6.1E-14 95.6 12.1 115 86-200 39-156 (395)
75 TIGR00883 2A0106 metabolite-pr 99.0 1.1E-09 2.3E-14 95.8 8.5 132 88-220 28-175 (394)
76 KOG3764 Vesicular amine transp 99.0 1E-09 2.3E-14 97.8 7.6 113 83-195 99-215 (464)
77 PRK10207 dipeptide/tripeptide 99.0 9.4E-09 2E-13 95.2 13.4 126 86-220 46-178 (489)
78 TIGR00924 yjdL_sub1_fam amino 99.0 1.2E-08 2.7E-13 93.9 14.0 126 86-220 44-176 (475)
79 KOG2533 Permease of the major 98.9 7.8E-09 1.7E-13 95.8 9.8 136 83-221 74-212 (495)
80 TIGR00902 2A0127 phenyl propri 98.9 6E-09 1.3E-13 92.8 8.2 114 87-200 36-152 (382)
81 PRK08633 2-acyl-glycerophospho 98.9 1.7E-08 3.7E-13 101.2 12.2 113 88-200 45-163 (1146)
82 PRK10489 enterobactin exporter 98.8 2.6E-09 5.5E-14 96.0 4.7 113 87-199 49-169 (417)
83 PRK09584 tppB putative tripept 98.8 3.4E-08 7.4E-13 91.6 12.2 126 86-220 53-185 (500)
84 COG0738 FucP Fucose permease [ 98.8 1.4E-08 2.9E-13 90.9 9.0 141 41-201 19-165 (422)
85 PRK11128 putative 3-phenylprop 98.8 1.9E-08 4E-13 89.5 8.2 113 87-201 36-153 (382)
86 TIGR00880 2_A_01_02 Multidrug 98.8 7.2E-09 1.6E-13 77.3 4.7 105 96-200 4-111 (141)
87 TIGR00890 2A0111 Oxalate/Forma 98.8 6.9E-08 1.5E-12 83.8 10.6 114 87-200 237-355 (377)
88 COG2223 NarK Nitrate/nitrite t 98.7 2.2E-08 4.7E-13 89.8 6.8 102 83-213 42-146 (417)
89 PRK10642 proline/glycine betai 98.7 1.7E-07 3.6E-12 86.5 12.9 77 87-163 283-362 (490)
90 TIGR00882 2A0105 oligosacchari 98.7 3E-07 6.4E-12 82.0 13.2 114 86-200 34-157 (396)
91 TIGR00883 2A0106 metabolite-pr 98.7 3.1E-07 6.7E-12 80.2 12.6 111 87-197 252-370 (394)
92 PRK06814 acylglycerophosphoeth 98.7 4.5E-08 9.7E-13 98.6 7.3 111 90-200 52-168 (1140)
93 PRK15462 dipeptide/tripeptide 98.6 4.9E-07 1.1E-11 83.9 13.2 126 86-220 41-173 (493)
94 PRK15011 sugar efflux transpor 98.6 1E-06 2.2E-11 78.8 14.7 116 86-201 248-365 (393)
95 cd06174 MFS The Major Facilita 98.6 4.7E-07 1E-11 77.6 12.0 116 86-201 207-326 (352)
96 PRK15011 sugar efflux transpor 98.6 4.4E-07 9.4E-12 81.1 12.0 113 86-200 47-167 (393)
97 PRK11551 putative 3-hydroxyphe 98.6 4.4E-07 9.5E-12 80.8 11.9 115 87-201 252-369 (406)
98 TIGR01299 synapt_SV2 synaptic 98.6 1.4E-07 3.1E-12 91.4 8.6 109 91-199 596-707 (742)
99 PRK03699 putative transporter; 98.6 4.2E-07 9.1E-12 81.2 10.9 115 86-200 237-353 (394)
100 TIGR00891 2A0112 putative sial 98.6 6.7E-07 1.5E-11 78.8 11.8 115 86-200 270-388 (405)
101 TIGR00901 2A0125 AmpG-related 98.6 9.6E-07 2.1E-11 77.4 12.8 98 87-212 241-350 (356)
102 PRK11010 ampG muropeptide tran 98.6 2.4E-07 5.2E-12 85.7 9.1 124 87-220 44-179 (491)
103 TIGR00895 2A0115 benzoate tran 98.5 1.1E-06 2.4E-11 76.9 12.2 97 87-211 282-378 (398)
104 TIGR00899 2A0120 sugar efflux 98.5 1.7E-06 3.7E-11 75.7 13.2 114 87-200 232-347 (375)
105 KOG0253 Synaptic vesicle trans 98.5 2.9E-07 6.3E-12 81.9 7.5 77 86-163 109-185 (528)
106 TIGR00900 2A0121 H+ Antiporter 98.5 1.8E-06 3.9E-11 74.7 12.2 98 87-212 244-342 (365)
107 TIGR00901 2A0125 AmpG-related 98.5 8.8E-07 1.9E-11 77.6 10.0 131 87-220 20-162 (356)
108 PRK12382 putative transporter; 98.5 1.2E-06 2.7E-11 77.7 10.1 110 92-201 251-363 (392)
109 TIGR00902 2A0127 phenyl propri 98.4 1.9E-06 4.1E-11 76.7 11.0 114 87-201 237-354 (382)
110 PRK05122 major facilitator sup 98.4 2.3E-06 5E-11 76.1 11.4 109 91-199 250-361 (399)
111 PRK09528 lacY galactoside perm 98.4 2.7E-06 5.8E-11 76.6 11.5 114 86-199 42-164 (420)
112 PRK11902 ampG muropeptide tran 98.4 1.8E-06 3.8E-11 77.4 10.1 124 87-220 31-166 (402)
113 TIGR00893 2A0114 d-galactonate 98.4 2.8E-06 6.1E-11 73.7 10.9 114 87-201 248-372 (399)
114 PRK09556 uhpT sugar phosphate 98.4 2.6E-06 5.6E-11 78.0 10.6 135 86-220 290-433 (467)
115 PRK09952 shikimate transporter 98.4 4.4E-06 9.6E-11 75.9 11.8 77 87-163 283-363 (438)
116 TIGR00711 efflux_EmrB drug res 98.4 5.3E-06 1.2E-10 75.4 11.9 116 86-201 287-409 (485)
117 KOG0569 Permease of the major 98.3 6.7E-06 1.4E-10 76.0 11.8 104 87-219 302-419 (485)
118 PRK10406 alpha-ketoglutarate t 98.3 7.6E-06 1.6E-10 74.1 11.9 45 87-131 276-320 (432)
119 PRK15075 citrate-proton sympor 98.3 9.4E-06 2E-10 73.5 12.5 112 86-197 270-389 (434)
120 TIGR00889 2A0110 nucleoside tr 98.3 2.4E-06 5.2E-11 77.4 8.4 114 88-201 249-370 (418)
121 PRK11128 putative 3-phenylprop 98.3 3.8E-06 8.3E-11 74.7 9.0 114 87-200 237-353 (382)
122 PRK10489 enterobactin exporter 98.3 8.3E-06 1.8E-10 73.2 11.2 116 86-201 255-373 (417)
123 TIGR00896 CynX cyanate transpo 98.3 6.9E-06 1.5E-10 72.0 10.3 111 87-198 229-344 (355)
124 TIGR00889 2A0110 nucleoside tr 98.3 8.5E-06 1.8E-10 73.8 11.2 77 86-162 34-111 (418)
125 PRK03893 putative sialic acid 98.3 1.4E-05 3.1E-10 73.0 12.5 116 86-201 307-427 (496)
126 TIGR00882 2A0105 oligosacchari 98.2 1.1E-05 2.5E-10 71.8 11.0 114 88-201 252-369 (396)
127 PRK09528 lacY galactoside perm 98.2 9.6E-06 2.1E-10 72.9 10.6 115 87-201 259-377 (420)
128 PRK08633 2-acyl-glycerophospho 98.2 1.2E-05 2.5E-10 81.0 12.2 108 87-194 265-376 (1146)
129 PRK14995 methyl viologen resis 98.2 2.3E-05 4.9E-10 72.5 12.6 115 86-200 291-411 (495)
130 PF07690 MFS_1: Major Facilita 98.2 2.8E-05 6.1E-10 67.0 12.5 100 87-214 239-342 (352)
131 TIGR00897 2A0118 polyol permea 98.2 1.2E-05 2.6E-10 72.1 10.2 115 87-201 254-375 (402)
132 PRK10504 putative transporter; 98.2 1.8E-05 4E-10 72.0 11.6 113 87-199 294-412 (471)
133 PRK03545 putative arabinose tr 98.2 1.2E-05 2.6E-10 71.5 9.7 113 87-200 238-353 (390)
134 PF05977 MFS_3: Transmembrane 98.1 2.5E-05 5.5E-10 73.1 11.5 107 88-194 43-157 (524)
135 TIGR01301 GPH_sucrose GPH fami 98.1 2.3E-05 4.9E-10 72.6 10.8 110 87-196 36-172 (477)
136 PRK10077 xylE D-xylose transpo 98.1 1.9E-05 4.2E-10 71.8 10.3 108 87-194 303-418 (479)
137 PRK09874 drug efflux system pr 98.1 2.1E-05 4.5E-10 69.8 10.2 110 91-200 259-371 (408)
138 PRK12307 putative sialic acid 98.1 3E-05 6.6E-10 69.4 11.3 113 87-199 263-380 (426)
139 PF06813 Nodulin-like: Nodulin 98.1 4.2E-05 9.1E-10 65.1 11.2 117 86-203 33-158 (250)
140 TIGR00710 efflux_Bcr_CflA drug 98.1 9.7E-05 2.1E-09 64.7 13.9 109 86-194 238-354 (385)
141 TIGR00892 2A0113 monocarboxyla 98.1 3.4E-05 7.4E-10 70.6 11.0 115 87-201 273-394 (455)
142 PRK09705 cynX putative cyanate 98.1 3.2E-05 6.9E-10 69.2 10.5 112 87-200 237-353 (393)
143 TIGR01272 gluP glucose/galacto 98.1 4.7E-05 1E-09 66.4 11.3 114 86-201 174-289 (310)
144 PRK03633 putative MFS family t 98.1 4E-05 8.6E-10 68.1 11.0 111 87-200 232-345 (381)
145 PF05631 DUF791: Protein of un 98.1 7.9E-05 1.7E-09 66.1 12.5 78 86-164 65-142 (354)
146 TIGR00879 SP MFS transporter, 98.1 4.5E-05 9.8E-10 68.1 11.2 114 87-201 316-444 (481)
147 PF05977 MFS_3: Transmembrane 98.0 5.8E-05 1.3E-09 70.7 11.8 97 87-211 251-347 (524)
148 KOG2563 Permease of the major 98.0 9.1E-05 2E-09 67.5 12.1 115 28-163 38-160 (480)
149 TIGR00881 2A0104 phosphoglycer 98.0 3E-05 6.5E-10 67.3 8.8 114 86-199 248-369 (379)
150 PRK15402 multidrug efflux syst 98.0 0.0002 4.3E-09 64.0 13.9 115 87-201 248-369 (406)
151 TIGR00792 gph sugar (Glycoside 98.0 9.1E-06 2E-10 73.0 5.0 110 85-194 30-154 (437)
152 TIGR00886 2A0108 nitrite extru 98.0 5.1E-05 1.1E-09 66.2 9.6 53 86-138 257-309 (366)
153 TIGR00792 gph sugar (Glycoside 98.0 8.8E-05 1.9E-09 66.6 11.0 114 88-201 255-379 (437)
154 PRK06814 acylglycerophosphoeth 97.9 6.5E-05 1.4E-09 76.0 11.1 114 86-199 257-393 (1140)
155 PF13347 MFS_2: MFS/sugar tran 97.9 7E-05 1.5E-09 67.7 10.2 75 89-163 259-335 (428)
156 COG2223 NarK Nitrate/nitrite t 97.9 6.4E-05 1.4E-09 67.8 9.5 114 86-201 250-374 (417)
157 TIGR00898 2A0119 cation transp 97.9 9.6E-05 2.1E-09 67.9 10.6 102 96-197 361-467 (505)
158 COG3104 PTR2 Dipeptide/tripept 97.9 5.9E-05 1.3E-09 69.4 8.9 115 85-199 56-178 (498)
159 TIGR00887 2A0109 phosphate:H+ 97.9 0.00013 2.8E-09 67.4 11.0 103 97-199 342-451 (502)
160 PRK11646 multidrug resistance 97.9 0.00041 8.9E-09 62.3 13.7 114 88-201 241-358 (400)
161 PRK10473 multidrug efflux syst 97.9 8.7E-05 1.9E-09 65.9 9.1 112 86-197 235-348 (392)
162 PF06779 DUF1228: Protein of u 97.8 0.00012 2.6E-09 52.0 7.8 78 48-145 5-82 (85)
163 PRK11195 lysophospholipid tran 97.8 0.00033 7.3E-09 62.7 12.6 77 86-163 237-313 (393)
164 TIGR02332 HpaX 4-hydroxyphenyl 97.8 7.2E-05 1.6E-09 67.5 8.3 115 87-201 276-394 (412)
165 COG2807 CynX Cyanate permease 97.8 0.00046 9.9E-09 61.5 12.9 108 86-194 43-152 (395)
166 PLN00028 nitrate transmembrane 97.8 0.00018 3.8E-09 66.3 10.7 111 86-196 284-403 (476)
167 PRK11273 glpT sn-glycerol-3-ph 97.8 0.00025 5.5E-09 64.6 11.6 113 87-199 286-407 (452)
168 COG2270 Permeases of the major 97.8 8.8E-05 1.9E-09 67.1 8.3 116 84-199 282-400 (438)
169 PF01306 LacY_symp: LacY proto 97.8 0.00046 1E-08 62.7 12.3 112 88-199 257-372 (412)
170 PF11700 ATG22: Vacuole efflux 97.8 0.00025 5.4E-09 65.8 10.8 114 85-198 312-438 (477)
171 KOG0253 Synaptic vesicle trans 97.7 0.0001 2.2E-09 66.1 7.5 94 99-196 390-490 (528)
172 PRK10133 L-fucose transporter; 97.7 0.00024 5.2E-09 64.8 10.2 113 86-200 291-405 (438)
173 COG0477 ProP Permeases of the 97.7 0.00014 3.1E-09 59.5 7.8 105 90-194 39-150 (338)
174 PRK10091 MFS transport protein 97.7 0.00015 3.2E-09 64.5 8.4 116 86-201 231-349 (382)
175 COG2271 UhpC Sugar phosphate p 97.7 0.00068 1.5E-08 61.5 11.9 102 86-215 284-390 (448)
176 PRK10054 putative transporter; 97.6 0.00018 3.8E-09 64.6 7.8 113 88-201 242-358 (395)
177 PRK11010 ampG muropeptide tran 97.6 0.0012 2.6E-08 61.2 13.4 114 86-201 254-377 (491)
178 TIGR00788 fbt folate/biopterin 97.6 0.00092 2E-08 61.6 12.3 77 86-163 57-140 (468)
179 PRK09848 glucuronide transport 97.6 0.00049 1.1E-08 62.5 10.3 114 88-201 262-387 (448)
180 PRK11102 bicyclomycin/multidru 97.6 0.0017 3.8E-08 56.9 13.3 110 86-195 226-342 (377)
181 TIGR02718 sider_RhtX_FptX side 97.6 0.0013 2.9E-08 58.4 12.6 115 87-201 240-365 (390)
182 TIGR00903 2A0129 major facilit 97.6 0.00077 1.7E-08 60.2 11.1 90 92-212 228-321 (368)
183 PRK10429 melibiose:sodium symp 97.6 0.00078 1.7E-08 61.9 11.4 113 88-200 264-391 (473)
184 TIGR00894 2A0114euk Na(+)-depe 97.6 0.00066 1.4E-08 61.9 10.3 117 86-202 293-422 (465)
185 PRK15034 nitrate/nitrite trans 97.5 0.00087 1.9E-08 61.9 11.0 102 96-199 292-425 (462)
186 PF03825 Nuc_H_symport: Nucleo 97.5 0.00054 1.2E-08 62.1 9.5 113 88-200 241-362 (400)
187 COG2814 AraJ Arabinose efflux 97.5 0.00084 1.8E-08 60.6 10.6 77 86-163 243-320 (394)
188 TIGR00712 glpT glycerol-3-phos 97.5 0.00099 2.1E-08 60.4 11.1 35 86-120 283-317 (438)
189 PRK11043 putative transporter; 97.5 0.0013 2.8E-08 58.5 11.7 115 87-201 235-356 (401)
190 PRK11663 regulatory protein Uh 97.5 0.0013 2.8E-08 59.6 11.8 114 86-200 275-397 (434)
191 PF03825 Nuc_H_symport: Nucleo 97.5 0.0011 2.4E-08 60.0 11.1 106 87-192 34-141 (400)
192 KOG4686 Predicted sugar transp 97.5 0.0007 1.5E-08 58.9 8.6 114 86-202 296-414 (459)
193 PRK10213 nepI ribonucleoside t 97.4 0.0035 7.5E-08 56.2 13.3 114 87-201 249-365 (394)
194 KOG2532 Permease of the major 97.4 0.00068 1.5E-08 62.7 8.7 140 57-221 278-432 (466)
195 KOG0254 Predicted transporter 97.4 0.0028 6.1E-08 58.9 12.1 99 93-220 332-447 (513)
196 TIGR00885 fucP L-fucose:H+ sym 97.3 0.0023 4.9E-08 57.9 10.5 112 89-201 268-380 (410)
197 KOG2504 Monocarboxylate transp 97.3 0.0022 4.7E-08 60.0 10.3 114 86-199 329-447 (509)
198 PF12832 MFS_1_like: MFS_1 lik 97.3 0.0012 2.7E-08 45.9 6.5 45 86-130 31-75 (77)
199 PF05978 UNC-93: Ion channel r 97.2 0.0019 4.1E-08 51.1 7.9 74 89-163 36-109 (156)
200 PRK09584 tppB putative tripept 97.2 0.0014 3E-08 60.9 8.0 91 92-210 318-421 (500)
201 PRK11652 emrD multidrug resist 97.1 0.0068 1.5E-07 53.8 11.4 115 86-200 239-358 (394)
202 KOG4686 Predicted sugar transp 97.1 0.00016 3.5E-09 62.9 0.8 103 86-190 75-186 (459)
203 TIGR02718 sider_RhtX_FptX side 97.0 0.0059 1.3E-07 54.2 9.6 68 42-129 8-78 (390)
204 PRK09669 putative symporter Ya 97.0 0.0009 2E-08 60.8 4.4 110 84-193 39-163 (444)
205 PRK09669 putative symporter Ya 96.9 0.009 2E-07 54.2 10.5 112 90-201 264-387 (444)
206 PRK11902 ampG muropeptide tran 96.9 0.009 1.9E-07 53.4 10.2 105 86-193 241-356 (402)
207 COG2211 MelB Na+/melibiose sym 96.9 0.012 2.5E-07 54.5 10.9 76 88-163 270-347 (467)
208 PF01306 LacY_symp: LacY proto 96.8 0.0039 8.5E-08 56.8 7.4 112 86-197 39-159 (412)
209 PRK10429 melibiose:sodium symp 96.8 0.0016 3.5E-08 59.8 4.8 106 85-190 37-157 (473)
210 COG2807 CynX Cyanate permease 96.8 0.019 4.2E-07 51.4 11.3 101 87-188 240-349 (395)
211 TIGR00924 yjdL_sub1_fam amino 96.8 0.012 2.6E-07 54.3 10.4 106 92-197 314-438 (475)
212 PF03209 PUCC: PUCC protein; 96.8 0.018 4E-07 52.1 11.1 102 82-211 236-341 (403)
213 KOG2816 Predicted transporter 96.6 0.0058 1.3E-07 56.5 7.2 101 95-200 67-172 (463)
214 PRK10207 dipeptide/tripeptide 96.6 0.007 1.5E-07 56.2 7.5 102 92-193 311-432 (489)
215 PRK11462 putative transporter; 96.4 0.062 1.3E-06 49.4 12.5 74 89-162 262-337 (460)
216 COG0738 FucP Fucose permease [ 96.3 0.074 1.6E-06 48.3 11.8 113 86-200 268-382 (422)
217 TIGR00788 fbt folate/biopterin 96.3 0.0079 1.7E-07 55.5 5.8 111 85-195 283-406 (468)
218 PRK09848 glucuronide transport 96.3 0.01 2.2E-07 53.9 6.2 77 86-162 40-128 (448)
219 PF03137 OATP: Organic Anion T 96.2 0.0011 2.4E-08 62.4 -0.3 112 86-197 34-198 (539)
220 PF13347 MFS_2: MFS/sugar tran 96.1 0.0028 6E-08 57.3 1.8 107 86-192 33-156 (428)
221 TIGR00926 2A1704 Peptide:H+ sy 96.1 0.045 9.8E-07 52.8 10.0 112 86-197 19-145 (654)
222 KOG0252 Inorganic phosphate tr 95.7 0.009 2E-07 55.0 3.1 92 101-193 359-459 (538)
223 PF00083 Sugar_tr: Sugar (and 95.7 0.00016 3.6E-09 65.3 -8.2 41 98-138 294-334 (451)
224 PRK15403 multidrug efflux syst 95.4 0.25 5.4E-06 44.5 11.7 78 86-163 250-332 (413)
225 PRK11462 putative transporter; 95.3 0.048 1E-06 50.1 6.6 112 83-194 38-164 (460)
226 KOG2533 Permease of the major 95.2 0.076 1.7E-06 49.6 7.8 121 86-206 305-435 (495)
227 KOG3764 Vesicular amine transp 95.2 0.027 5.8E-07 51.1 4.4 114 88-201 304-428 (464)
228 PRK15462 dipeptide/tripeptide 94.9 0.14 3.1E-06 47.7 8.7 93 91-211 309-417 (493)
229 PF06609 TRI12: Fungal trichot 94.7 0.07 1.5E-06 50.9 6.1 111 90-200 349-465 (599)
230 KOG2816 Predicted transporter 94.4 0.2 4.3E-06 46.5 8.3 115 85-199 272-389 (463)
231 PF11700 ATG22: Vacuole efflux 94.2 0.43 9.2E-06 44.4 9.9 74 90-163 70-146 (477)
232 KOG3626 Organic anion transpor 94.1 0.027 5.8E-07 54.7 1.8 112 86-197 128-294 (735)
233 KOG3762 Predicted transporter 94.0 0.031 6.7E-07 52.4 2.1 107 88-194 404-518 (618)
234 TIGR01301 GPH_sucrose GPH fami 93.4 0.93 2E-05 42.2 10.6 71 93-163 308-400 (477)
235 KOG0255 Synaptic vesicle trans 92.9 0.42 9E-06 44.3 7.7 95 102-196 362-462 (521)
236 PF03209 PUCC: PUCC protein; 92.8 0.63 1.4E-05 42.3 8.4 98 86-212 11-130 (403)
237 KOG3762 Predicted transporter 92.8 0.26 5.7E-06 46.4 6.0 55 86-140 42-97 (618)
238 COG2211 MelB Na+/melibiose sym 92.6 0.28 6E-06 45.5 6.0 82 82-163 40-132 (467)
239 KOG0637 Sucrose transporter an 92.5 0.23 4.9E-06 45.9 5.1 111 87-197 64-200 (498)
240 COG2270 Permeases of the major 92.4 1 2.3E-05 41.2 9.2 76 88-163 56-135 (438)
241 KOG4332 Predicted sugar transp 92.2 0.03 6.6E-07 48.6 -0.8 75 86-164 68-145 (454)
242 PTZ00207 hypothetical protein; 91.3 0.65 1.4E-05 44.4 7.0 108 95-203 396-515 (591)
243 KOG3098 Uncharacterized conser 91.1 0.7 1.5E-05 42.8 6.8 67 96-163 56-122 (461)
244 PF01770 Folate_carrier: Reduc 89.2 2.9 6.2E-05 38.3 9.0 78 85-162 35-113 (412)
245 TIGR00805 oat sodium-independe 88.6 2.3 5.1E-05 40.9 8.5 49 86-134 362-413 (633)
246 PF06963 FPN1: Ferroportin1 (F 88.2 6.1 0.00013 36.4 10.5 98 86-211 289-396 (432)
247 KOG2615 Permease of the major 87.6 0.96 2.1E-05 41.1 4.7 121 85-205 292-420 (451)
248 COG3104 PTR2 Dipeptide/tripept 85.2 8.1 0.00017 36.2 9.6 92 91-210 325-433 (498)
249 PF03092 BT1: BT1 family; Int 85.1 4.2 9.2E-05 37.1 7.8 109 86-195 21-143 (433)
250 PRK03612 spermidine synthase; 83.9 20 0.00042 33.8 11.8 113 88-201 48-174 (521)
251 PF02487 CLN3: CLN3 protein; 83.8 8 0.00017 35.3 8.9 70 89-163 280-355 (402)
252 KOG1237 H+/oligopeptide sympor 83.8 23 0.00051 33.8 12.4 53 87-139 70-123 (571)
253 PF02487 CLN3: CLN3 protein; 79.1 10 0.00022 34.6 7.8 99 93-194 62-161 (402)
254 TIGR00880 2_A_01_02 Multidrug 77.0 18 0.0004 25.6 7.6 44 89-132 86-129 (141)
255 TIGR01272 gluP glucose/galacto 77.0 1.2 2.6E-05 38.7 1.2 63 139-201 6-71 (310)
256 KOG2563 Permease of the major 76.1 7.1 0.00015 36.2 5.9 77 87-163 298-379 (480)
257 KOG3098 Uncharacterized conser 75.6 19 0.00042 33.5 8.7 99 91-189 280-401 (461)
258 TIGR00769 AAA ADP/ATP carrier 74.0 25 0.00054 32.8 9.1 113 88-200 41-189 (472)
259 COG5336 Uncharacterized protei 72.4 15 0.00033 27.2 5.7 39 90-128 42-81 (116)
260 KOG3097 Predicted membrane pro 71.9 12 0.00025 33.6 6.0 59 104-163 72-130 (390)
261 KOG3574 Acetyl-CoA transporter 68.0 31 0.00066 31.8 7.9 63 40-125 36-103 (510)
262 PRK11469 hypothetical protein; 64.9 71 0.0015 25.9 8.9 31 104-134 149-179 (188)
263 KOG1330 Sugar transporter/spin 63.6 35 0.00076 31.9 7.5 30 88-117 281-310 (493)
264 TIGR00806 rfc RFC reduced fola 57.9 73 0.0016 30.1 8.7 70 94-163 302-373 (511)
265 PF07672 MFS_Mycoplasma: Mycop 55.3 49 0.0011 28.5 6.6 97 93-190 144-253 (267)
266 PF01770 Folate_carrier: Reduc 54.8 1.7E+02 0.0038 26.8 11.3 73 91-163 286-360 (412)
267 KOG0637 Sucrose transporter an 52.2 27 0.00058 32.7 4.8 71 93-163 335-405 (498)
268 TIGR00939 2a57 Equilibrative N 42.8 2E+02 0.0044 26.4 9.1 72 91-163 308-392 (437)
269 PF00854 PTR2: POT family; In 42.1 40 0.00087 29.7 4.4 73 121-193 2-89 (372)
270 PF02632 BioY: BioY family; I 41.2 1.4E+02 0.003 23.2 6.7 26 96-121 59-84 (148)
271 COG4769 Predicted membrane pro 40.5 50 0.0011 26.5 4.1 44 104-153 87-130 (181)
272 COG1268 BioY Uncharacterized c 40.3 1.3E+02 0.0027 24.5 6.5 24 96-119 88-111 (184)
273 PF03219 TLC: TLC ATP/ADP tran 39.5 2.2E+02 0.0047 26.8 8.9 52 88-139 56-108 (491)
274 COG2076 EmrE Membrane transpor 39.0 1.6E+02 0.0034 21.7 7.4 57 107-163 17-74 (106)
275 PF06963 FPN1: Ferroportin1 (F 38.8 3.1E+02 0.0067 25.3 9.6 42 92-133 40-81 (432)
276 KOG4085 Uncharacterized conser 35.0 2.2E+02 0.0048 22.3 7.3 18 110-127 87-104 (175)
277 PRK10692 hypothetical protein; 33.5 1.4E+02 0.0031 21.2 5.0 45 119-163 3-58 (92)
278 PF11947 DUF3464: Protein of u 32.7 2.2E+02 0.0048 22.4 6.6 16 141-156 95-110 (153)
279 COG3202 ATP/ADP translocase [E 31.1 3.8E+02 0.0083 25.4 8.9 53 87-139 58-111 (509)
280 PF11712 Vma12: Endoplasmic re 30.5 1.4E+02 0.0031 22.8 5.2 27 89-115 74-101 (142)
281 PF01733 Nucleoside_tran: Nucl 29.9 19 0.0004 31.3 0.2 68 95-163 187-268 (309)
282 TIGR02840 spore_YtaF putative 28.7 3.3E+02 0.0071 22.3 8.8 25 30-54 128-152 (206)
283 PF10762 DUF2583: Protein of u 27.1 1.8E+02 0.0038 20.6 4.6 44 119-162 3-57 (89)
284 PF13493 DUF4118: Domain of un 26.9 1.4E+02 0.003 21.0 4.4 23 98-120 83-105 (105)
285 TIGR02230 ATPase_gene1 F0F1-AT 25.9 2.6E+02 0.0057 20.3 6.4 29 102-130 54-83 (100)
286 COG5336 Uncharacterized protei 25.4 94 0.002 23.1 3.1 33 132-164 62-94 (116)
287 KOG2325 Predicted transporter/ 25.4 88 0.0019 29.4 3.7 36 167-202 414-450 (488)
288 TIGR02230 ATPase_gene1 F0F1-AT 23.4 1.6E+02 0.0035 21.4 4.0 23 93-115 75-97 (100)
289 KOG3626 Organic anion transpor 23.1 3.3E+02 0.0072 27.1 7.3 47 86-132 424-473 (735)
290 PF06596 PsbX: Photosystem II 23.0 1.8E+02 0.0039 17.4 3.6 24 88-111 2-25 (39)
291 KOG3810 Micronutrient transpor 22.4 3.9E+02 0.0084 24.5 7.0 60 93-152 274-335 (433)
292 TIGR02185 Trep_Strep conserved 21.8 2E+02 0.0043 23.2 4.8 90 98-195 38-129 (189)
293 PRK02237 hypothetical protein; 20.9 2.6E+02 0.0057 20.7 4.7 49 90-138 56-104 (109)
294 PF02694 UPF0060: Uncharacteri 20.6 1.9E+02 0.0042 21.3 4.0 51 89-139 53-103 (107)
295 COG0387 ChaA Ca2+/H+ antiporte 20.4 6.5E+02 0.014 22.8 8.6 19 113-131 280-298 (368)
296 PF09605 Trep_Strep: Hypotheti 20.0 4.6E+02 0.01 21.0 7.6 85 98-190 36-122 (186)
No 1
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.65 E-value=1.1e-15 Score=141.74 Aligned_cols=153 Identities=32% Similarity=0.463 Sum_probs=123.4
Q ss_pred CCCchHHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCCh--hHHHHHHHHHHHHH
Q 027462 26 NGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDS--QLLAAFTSSLYISG 103 (223)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~s~~~lg~ 103 (223)
..+........+....++.+.+|++ +..+....+....+++....... .+. .+.+|+.+...++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~fg~~-g~~g~~s~~~~~~~~~~~~~~~~------------~~~~~~~~s~~~s~~~lga 102 (513)
T KOG0254|consen 36 PTMISPFVILLALVAALGGLLFGYD-GDIGGISGALDFLQRFASLYDLS------------TGEYSVRQGLLTSILNLGA 102 (513)
T ss_pred cccCceehHHHHHHHHHHHHHhCcc-cccccchhhHHHHHhcccccccc------------cchhHHHHHHHHHHHHHHH
Confidence 3445556677788888999999998 43333343345555543221111 122 56799999999999
Q ss_pred HHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhh
Q 027462 104 LIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLAS 183 (223)
Q Consensus 104 ~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (223)
.+++++.|+++|++|||+.++++.+++.++.+++++++++.+++++|++.|+|.|.....
T Consensus 103 ~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~-------------------- 162 (513)
T KOG0254|consen 103 LVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVL-------------------- 162 (513)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhc--------------------
Confidence 999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcccCccchhhhhhhccCCCCCcccccchhhhhhhh
Q 027462 184 KYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLL 219 (223)
Q Consensus 184 ~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~ 219 (223)
.|.+.+|+.|++.||...+..++-+.++
T Consensus 163 --------~piy~sEiap~~~RG~l~~~~~l~~~~G 190 (513)
T KOG0254|consen 163 --------APVYISEIAPAHIRGTLVSLYQLFITIG 190 (513)
T ss_pred --------chhhHhhcCChhhhHHHHHHHHHHHHHH
Confidence 9999999999999999998766555544
No 2
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.62 E-value=6.1e-15 Score=134.12 Aligned_cols=177 Identities=16% Similarity=0.250 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhH
Q 027462 31 VFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFA 110 (223)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~ 110 (223)
+....++++++++.+..+||.+++++.. |.+.+.|.+. ...+.+.++.+.+++.+.+.++..+++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----------~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~ 75 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTV--ESLNTVFVAP----------QNLSESAANSLLGFCVASALIGCIIGGALG 75 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhH--HHHHHHhccc----------ccccccCChhHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777788899999999988654 7788877532 233346789999999999999999999999
Q ss_pred HhHHhhhchhHHHHHHHHHHHHHHHHHhhh------------hhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-ccc
Q 027462 111 STVTRAFGRKASILVGGTAFLAGSAIGGAA------------LNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNT 175 (223)
Q Consensus 111 g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a------------~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~ 175 (223)
|++.||+|||++++++.+++.++.+.++++ ..+..+++.|+++|++.|...+... +++.+++ +|+
T Consensus 76 G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg 155 (479)
T PRK10077 76 GYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRG 155 (479)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhh
Confidence 999999999999999999998888877753 2256788999999999999888654 6666654 488
Q ss_pred ccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462 176 EEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
++.+..+....+|.++++....-..+.. .+......+|||.|.+
T Consensus 156 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~-~~~~~~~~gWr~~f~~ 199 (479)
T PRK10077 156 KLVSFNQFAIIFGQLVVYFVNYFIARSG-DASWLNTDGWRYMFAS 199 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC-cccccccCChHHHHHH
Confidence 8888888888888877665433222221 1122234589988865
No 3
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.60 E-value=2.1e-15 Score=139.04 Aligned_cols=160 Identities=16% Similarity=0.088 Sum_probs=136.4
Q ss_pred HHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHh
Q 027462 33 VVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFAST 112 (223)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~ 112 (223)
.+.....++++.++...|.++++.. +|.+.++++ .+.++.+|+.+.+.++..+..++.|+
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a--~p~i~~~l~------------------~s~~~~~~~~~~~~l~~~~~~~~~G~ 63 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVA--APTLSMTLG------------------ASGNELLWIIDIYSLVMAGMVLPMGA 63 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhC------------------CCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788889999999998744 599988885 57889999999999999999999999
Q ss_pred HHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccc-c-ccccccccchhhhcccC
Q 027462 113 VTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKW-H-HQNTEEHSPLASKYVLP 188 (223)
Q Consensus 113 l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~-~-~~~~~~~~~~~~~~~~~ 188 (223)
+.||+|||++++++.+++.+++++++++++++.++++|+++|+|.+...+... +.+.+ + ++|+++++.....+.+|
T Consensus 64 l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g 143 (495)
T PRK14995 64 LGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGG 143 (495)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988766433 44444 3 45999999999999999
Q ss_pred ccchhhhhhhccCCCCCcccccchhhhhhhhhc
Q 027462 189 LVSYPLIFSITAPKRSRGAGAGESPWQWLLLLH 221 (223)
Q Consensus 189 ~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l~ 221 (223)
.+++|.+...+.+ ..+|||.|.++
T Consensus 144 ~~~gp~lgg~l~~---------~~gwr~~f~i~ 167 (495)
T PRK14995 144 AAFGPLVGGILLE---------HFYWGSVFLIN 167 (495)
T ss_pred HHHHHHHHHHhhc---------cCChHHHHHHH
Confidence 9999987665554 35799988764
No 4
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.60 E-value=1.1e-14 Score=130.25 Aligned_cols=128 Identities=13% Similarity=0.166 Sum_probs=112.3
Q ss_pred HHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHh
Q 027462 36 SCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTR 115 (223)
Q Consensus 36 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~d 115 (223)
..+.++++.|..+.+..+..++. |++.++++ ++....+++.|.|.++..++.++...+.|
T Consensus 14 ~l~aLa~~~F~igttEfv~~gLL--p~iA~dl~------------------vs~~~aG~lis~yAl~~ai~ap~l~~lt~ 73 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGLL--PPIAADLG------------------VSEGAAGQLITAYALGVALGAPLLALLTG 73 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhch--HHHHHHcC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556677788888887776664 89988885 79999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhhhcccCccchhhh
Q 027462 116 AFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLI 195 (223)
Q Consensus 116 r~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (223)
|++||++++....++.++++++++++|+..++++|++.|+..|...+. ...+
T Consensus 74 r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i----------------------------~~~~ 125 (394)
T COG2814 74 RLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSI----------------------------AAAL 125 (394)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH----------------------------HHHH
Confidence 999999999999999999999999999999999999999999999998 6666
Q ss_pred hhhccCCCCCcccccc
Q 027462 196 FSITAPKRSRGAGAGE 211 (223)
Q Consensus 196 ~~~~~p~~~rg~~~~~ 211 (223)
..++.|+++|++++++
T Consensus 126 a~~lvpp~~~~~Aiai 141 (394)
T COG2814 126 AARLVPPGKRGRALAL 141 (394)
T ss_pred HHHHcCccchhhHHHH
Confidence 7777777777776665
No 5
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.56 E-value=2.9e-14 Score=131.58 Aligned_cols=149 Identities=22% Similarity=0.167 Sum_probs=123.0
Q ss_pred CCchHHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHH
Q 027462 27 GKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIA 106 (223)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~ 106 (223)
.+..+.++..+++++++.+.++||.+.++.+. |.+.+++.. .+.+.++.+.+++.+...++..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~--~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ig~~ig 72 (502)
T TIGR00887 8 APFGWQHFRAIVIAGVGFFTDSYDLFCISLVT--KMLGYVYYH-------------GKGPLPSSVSAAVNGSASIGTLAG 72 (502)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcc-------------CcccchHHHHHHHHHHHHHHHHHH
Confidence 45566777788888889999999999988665 444333220 012346778899999999999999
Q ss_pred HHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccc
Q 027462 107 SLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALN------IYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSP 180 (223)
Q Consensus 107 ~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~------~~~l~v~r~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~ 180 (223)
.++.|++.||+|||+.+.++.++..++.++++++++ +.+++++|++.|++.|...+.
T Consensus 73 ~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~----------------- 135 (502)
T TIGR00887 73 QLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPL----------------- 135 (502)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHH-----------------
Confidence 999999999999999999999999999988888754 678999999999999999998
Q ss_pred hhhhcccCccchhhhhhhccCCCCCcccccchhhhhhh
Q 027462 181 LASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLL 218 (223)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~ 218 (223)
.+.+..|++|++.||+++++.+..+.+
T Consensus 136 -----------~~~~~~e~~p~~~Rg~~~~~~~~~~~~ 162 (502)
T TIGR00887 136 -----------SAIITSEFATKKWRGAMMAAVFAMQGF 162 (502)
T ss_pred -----------HHHHHHHhcChhhHHHHHHHHHHHHHH
Confidence 899999999999999999876555443
No 6
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.55 E-value=4.3e-14 Score=127.90 Aligned_cols=173 Identities=17% Similarity=0.147 Sum_probs=117.5
Q ss_pred CCchHHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhH---HHHHHHHHHHHH
Q 027462 27 GKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQL---LAAFTSSLYISG 103 (223)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~~~s~~~lg~ 103 (223)
...+.+++.......++.++..||..+++.+. |.+.+++++.- .+..+ .+.+.+..+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~l~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~ 76 (432)
T PRK10406 14 SSDTRRRIWAIVGASSGNLVEWFDFYVYSFCS--LYFAHIFFPSG---------------NTTTQLLQTAGVFAAGFLMR 76 (432)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhCCCC---------------CchHHHHHHHHHHHHHHHHH
Confidence 33444455455566677888899999987554 77888876310 13333 334445566677
Q ss_pred HHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHhhhhhhhhhhhh--hccccc-c
Q 027462 104 LIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIY--------MLIFGRVLLGVGIGFTNQCRY--ISQKWH-H 172 (223)
Q Consensus 104 ~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~--------~l~v~r~l~G~g~g~~~~~~~--~~~~~~-~ 172 (223)
.+++++.|++.||+|||+++..+.+++.++.+++++++++. .+++.|+++|++.|...+... +++.++ +
T Consensus 77 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~ 156 (432)
T PRK10406 77 PIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEG 156 (432)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCC
Confidence 79999999999999999999999999999999999887753 588999999999998877643 555553 3
Q ss_pred cccccccchhhhcccCccchhhhh---hhccCCCCCcccccchhhhhhhhh
Q 027462 173 QNTEEHSPLASKYVLPLVSYPLIF---SITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
+|+++.+....+..+|.++++... ....+.. .....+||+.|.+
T Consensus 157 ~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~----~~~~~gWr~~F~i 203 (432)
T PRK10406 157 RKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDA----ELREWGWRIPFAL 203 (432)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH----HHhccchHHHHHH
Confidence 477776666666555555544321 2222110 0112478888865
No 7
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.55 E-value=6.4e-14 Score=125.31 Aligned_cols=176 Identities=29% Similarity=0.382 Sum_probs=131.5
Q ss_pred CCCchHHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHH
Q 027462 26 NGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLI 105 (223)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~ 105 (223)
.++..++.+..++++.++.+++++|...++... |...+++.-. ...+-+.+..+.+++.+.+.++..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i 86 (481)
T TIGR00879 19 LGSTYWKVALLSLIAAIGGLMFGYDTGVIGGAL--ALPAFEFKFT----------SANSDSYSSSLWGLVVSIFLVGGFI 86 (481)
T ss_pred CCcccHHHHHHHHHHHHHHHhcccccchhhhhh--hcHHHHHhcC----------CcccCCCChhHHHHHHHHHHHHHHH
Confidence 344556666667777778888999998887665 4444444210 0011124689999999999999999
Q ss_pred HHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-ccccccc
Q 027462 106 ASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA---LNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHS 179 (223)
Q Consensus 106 ~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a---~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~ 179 (223)
+.++.|++.||+|||++++++.++..++.+++.+. .+++.+++.|++.|++.+...+... ..+.+++ +|+++.+
T Consensus 87 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 166 (481)
T TIGR00879 87 GALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTS 166 (481)
T ss_pred HHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhh
Confidence 99999999999999999999999999888887554 3455889999999999988777543 6666654 4999999
Q ss_pred chhhhcccCccchhhhh-hhccCCCCCcccccchhhhhhhhh
Q 027462 180 PLASKYVLPLVSYPLIF-SITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 180 ~~~~~~~~~~~~~~~~~-~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
.......+|.++++.+. .. +......+|||.+.+
T Consensus 167 ~~~~~~~~G~~~~~~~~~~~-------~~~~~~~~w~~~f~~ 201 (481)
T TIGR00879 167 LYQLAITFGILVAYGFGSGK-------VSLNNTLGWRIPLGL 201 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHh-------hcCCCCccHHHHHHH
Confidence 99999999999998876 11 111123578888765
No 8
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.54 E-value=3.2e-14 Score=137.01 Aligned_cols=171 Identities=15% Similarity=0.162 Sum_probs=137.5
Q ss_pred hHHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHh
Q 027462 30 TVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLF 109 (223)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~ 109 (223)
.+..+.+.++++++.+..+++..+++.+ +|.+.++++ ++..+.+++.+++.++.++++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~i--lp~i~~~~g------------------ls~~~~g~l~s~~~lG~iiG~li 221 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFV--LPSAEKDLC------------------IPDSGKGMLGLIVYLGMMVGAFF 221 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhC------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777788888889998877655 477777764 68899999999999999999999
Q ss_pred HHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hccccccc-ccccccchhhhcc
Q 027462 110 ASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHHQ-NTEEHSPLASKYV 186 (223)
Q Consensus 110 ~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~ 186 (223)
+|+++||+|||++++++.++..++.+++++++++.+++++|++.|++.|...+... +++.+..+ |++..+.+...+.
T Consensus 222 ~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~ 301 (742)
T TIGR01299 222 WGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWM 301 (742)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998877654 66666554 8889999999999
Q ss_pred cCccchhhhhhhccCC-CCC---cccccchhhhhhhhh
Q 027462 187 LPLVSYPLIFSITAPK-RSR---GAGAGESPWQWLLLL 220 (223)
Q Consensus 187 ~~~~~~~~~~~~~~p~-~~r---g~~~~~~~~~~~~~l 220 (223)
+|.++++.+..-+.|. .++ +......+|||.+.+
T Consensus 302 iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i 339 (742)
T TIGR01299 302 IGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIV 339 (742)
T ss_pred HHHHHHHHHHHHHHHhccchhccccccccccHHHHHHH
Confidence 9988887765444442 111 223344679998765
No 9
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.53 E-value=1.5e-13 Score=126.05 Aligned_cols=153 Identities=25% Similarity=0.424 Sum_probs=125.0
Q ss_pred CCchHHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHH
Q 027462 27 GKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIA 106 (223)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~ 106 (223)
++..++..+.++.++++++-+||+.+.++.. .+..++|.++.+.+.+..+...+. -+...+.+.+++.+|.++|
T Consensus 3 ~~~t~~L~~~~~~~~~gsf~~Gy~~~~iNap---~~~i~~f~n~t~~~r~g~~~s~~~---~~~lwS~~vs~f~iG~~~G 76 (485)
T KOG0569|consen 3 PKLTRRLLLAVIVATLGSFQFGYNIGVVNAP---QELIKSFINETLIERYGLPLSDST---LDLLWSLIVSIFFIGGMIG 76 (485)
T ss_pred CCccHHHHHHHHHHHHhchhhhhhheecCch---HHHHHHHHHHHHHHhcCCCCChHH---HHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888899999999997544 677888877776655421111111 2335577899999999999
Q ss_pred HHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhh
Q 027462 107 SLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA---LNIYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLAS 183 (223)
Q Consensus 107 ~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a---~~~~~l~v~r~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (223)
+++.++++||+|||..++++.++..++.++..++ +++.+++++|++.|+..|.....
T Consensus 77 s~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~-------------------- 136 (485)
T KOG0569|consen 77 SFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGL-------------------- 136 (485)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHH--------------------
Confidence 9999999999999999999999998888777665 78899999999999999999999
Q ss_pred hcccCccchhhhhhhccCCCCCcccccchh
Q 027462 184 KYVLPLVSYPLIFSITAPKRSRGAGAGESP 213 (223)
Q Consensus 184 ~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~ 213 (223)
.|.+..|..|++.||..-.+.+
T Consensus 137 --------~pmyl~E~sP~~~RG~~g~~~~ 158 (485)
T KOG0569|consen 137 --------VPMYLTEISPKNLRGALGTLLQ 158 (485)
T ss_pred --------HHHHHhhcChhhhccHHHHHHH
Confidence 9999999999999999877643
No 10
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.52 E-value=5.2e-14 Score=126.90 Aligned_cols=162 Identities=13% Similarity=0.037 Sum_probs=129.6
Q ss_pred HHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHh
Q 027462 36 SCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTR 115 (223)
Q Consensus 36 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~d 115 (223)
...+..+..++..+|....+... |.+.++++ +++++.+++.+.+.++..+++++.|++.|
T Consensus 9 ~~~~~~~~~~~~~~d~~~~~~~~--~~l~~~~~------------------~s~~~~g~~~s~~~~~~~~~~~~~g~l~d 68 (412)
T TIGR02332 9 LIIFLFILFIFSFLDRINIGFAG--LTMGKDLG------------------LSATMFGLAATLFYAAYVICGIPSNIMLA 68 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHH--HhhHhhcC------------------CCHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34445555566777777776443 66666664 79999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccch
Q 027462 116 AFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSY 192 (223)
Q Consensus 116 r~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 192 (223)
|+|||+++..+.++..++.++.++++++.++++.|++.|++.+...+... .++.+++ +|+++.+.+...+++|.+++
T Consensus 69 r~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~ 148 (412)
T TIGR02332 69 IIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALG 148 (412)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998776543 5666665 49999999999999999988
Q ss_pred hhhhhhccCCCCCcccccchhhhhhhhh
Q 027462 193 PLIFSITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 193 ~~~~~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
+.+..-..+.+ + ..+..+|||.|.+
T Consensus 149 ~~~~~~l~~~~--~-~~~~~gwr~~f~~ 173 (412)
T TIGR02332 149 LILSGYILALD--G-LMALKGWQWLFLL 173 (412)
T ss_pred HHHHHHHHhCC--C-CCCccchhHHHHH
Confidence 88765443210 0 1223579998865
No 11
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.52 E-value=1e-13 Score=122.18 Aligned_cols=161 Identities=21% Similarity=0.314 Sum_probs=127.6
Q ss_pred HHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHh
Q 027462 33 VVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFAST 112 (223)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~ 112 (223)
++.....+.++.+..+++....+... |.+.++++ +++.+.+++.+.+.++..++.++.|+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~------------------~s~~~~g~~~~~~~~~~~~~~~~~G~ 69 (405)
T TIGR00891 10 QWNAFSAAWLGWLLDAFDFFLVALVL--AEVAGEFG------------------LTTVDAASLISAALISRWFGALMFGL 69 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhC------------------CChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666777788887776554 77777774 68999999999999999999999999
Q ss_pred HHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hccccc-ccccccccchhhhcccCc
Q 027462 113 VTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWH-HQNTEEHSPLASKYVLPL 189 (223)
Q Consensus 113 l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~ 189 (223)
+.||+|||++++++.++..++.++.++++++..+++.|++.|++.+...+... ..+.++ ++|+++.+.....+.+|.
T Consensus 70 l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~ 149 (405)
T TIGR00891 70 WGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGA 149 (405)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888776543 555554 458999999999999999
Q ss_pred cchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462 190 VSYPLIFSITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 190 ~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
++++.+..-.... .+ .+||+.+.+
T Consensus 150 ~~~~~l~~~l~~~--~~-----~~w~~~f~~ 173 (405)
T TIGR00891 150 VVAAQVYSLVVPV--WG-----DGWRALFFI 173 (405)
T ss_pred HHHHHHHHHHHHh--cC-----ccHHHHHHH
Confidence 8888765544321 00 247777654
No 12
>PRK03545 putative arabinose transporter; Provisional
Probab=99.51 E-value=1.3e-13 Score=122.67 Aligned_cols=125 Identities=14% Similarity=0.079 Sum_probs=106.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY- 165 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~- 165 (223)
.++++.+++.+.+.++..++.++.|++.||+|||+++..+.++..++.+.+++++++.++++.|++.|++.+...+...
T Consensus 41 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~ 120 (390)
T PRK03545 41 MQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITAS 120 (390)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999998887665433
Q ss_pred -hccccc-ccccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462 166 -ISQKWH-HQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 166 -~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
.++.++ +||+++++....+..+|.+++|.+..-... ..+|||.|.+
T Consensus 121 ~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~---------~~gw~~~f~~ 168 (390)
T PRK03545 121 LAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ---------YLGWRTTFLA 168 (390)
T ss_pred HHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH---------HhcHHHHHHH
Confidence 555554 469999999999999999988876544332 3478887765
No 13
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.51 E-value=7.8e-14 Score=127.51 Aligned_cols=144 Identities=11% Similarity=-0.047 Sum_probs=115.4
Q ss_pred HHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHh
Q 027462 33 VVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFAST 112 (223)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~ 112 (223)
.+.......+++++...+...++.. .|.+.++++ ++.++.+++.+.+.+++.++.++.|+
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~--~~~i~~~~~------------------~s~~~~g~~~s~~~~~~~~~~~~~G~ 86 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAA--QNDMISTYG------------------LSTTELGMIGLGFSITYGVGKTLVGY 86 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhh--hHHHHHhcC------------------CCHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4445555566666666677777644 488888875 68999999999999999999999999
Q ss_pred HHhhhchhHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhh
Q 027462 113 VTRAFGRKASILVGGTAFLAGSAIGGA-----ALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASK 184 (223)
Q Consensus 113 l~dr~Grk~~~~~~~l~~~~~~l~~~~-----a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~ 184 (223)
+.||+|||+++.++.++..+..++.++ ++++..+++.|++.|++.+...+... .++.+++ +|+++.+....+
T Consensus 87 l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~ 166 (467)
T PRK09556 87 YADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNIS 166 (467)
T ss_pred HhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecc
Confidence 999999999998888777766655544 58899999999999998887666543 6666655 599999999999
Q ss_pred cccCccchhhhh
Q 027462 185 YVLPLVSYPLIF 196 (223)
Q Consensus 185 ~~~~~~~~~~~~ 196 (223)
..+|.++++.+.
T Consensus 167 ~~lG~~l~~~i~ 178 (467)
T PRK09556 167 HNLGGAGAGGVA 178 (467)
T ss_pred cchhhhHHHHHH
Confidence 999999887754
No 14
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.51 E-value=1.5e-13 Score=123.15 Aligned_cols=154 Identities=18% Similarity=0.278 Sum_probs=124.3
Q ss_pred HHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhh
Q 027462 38 IVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAF 117 (223)
Q Consensus 38 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~ 117 (223)
+...++.+..+++.....+. +|.+.++++ +++.+.+++.+.+.++..+++++.|++.||+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~------------------~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~ 80 (426)
T PRK12307 21 FSAWLGYVFDGFDFMLIFYI--MYLIKADLG------------------LTDMEGAFLATAAFIGRPFGGALFGLLADKF 80 (426)
T ss_pred HHHHHHHHHHHhHHHHHHHH--HHHHHHHhC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556667777666544 377777764 6899999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hccccccc-ccccccchhhhcccCccchhh
Q 027462 118 GRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHHQ-NTEEHSPLASKYVLPLVSYPL 194 (223)
Q Consensus 118 Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 194 (223)
|||+++.++.++..++.++.++++++..++++|++.|++.+...+... ..+.++++ |+++.+....++++|.++++.
T Consensus 81 g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~ 160 (426)
T PRK12307 81 GRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAY 160 (426)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHH
Confidence 999999999999999999999999999999999999999887766543 56666554 899999999999999998876
Q ss_pred hhhhccCCCCCcccccchhhhhhhhh
Q 027462 195 IFSITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 195 ~~~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
+...... ..+||+.+.+
T Consensus 161 l~~~l~~---------~~~w~~~f~i 177 (426)
T PRK12307 161 FMPSFAE---------AYGWRAAFFV 177 (426)
T ss_pred HHHHHcc---------cCCHHHHHHH
Confidence 5544332 2368887654
No 15
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.49 E-value=2.6e-13 Score=124.99 Aligned_cols=162 Identities=17% Similarity=0.180 Sum_probs=119.2
Q ss_pred HHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCCh--hHHHH--HHHHHHHHHHHHHHhHHh
Q 027462 37 CIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDS--QLLAA--FTSSLYISGLIASLFAST 112 (223)
Q Consensus 37 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~--~~s~~~lg~~~~~~~~g~ 112 (223)
.+...++.++.+||..+++... |.+.++|++.. ++ ...+. +.+..+++..+++++.|+
T Consensus 18 ~~~~~~g~~~~~~d~~~~~~~~--~~i~~~~~~~~----------------~~~~~~~~~~~~~~~~~l~~~ig~~~~G~ 79 (490)
T PRK10642 18 ITAASLGNAMEWFDFGVYGFVA--YALGKVFFPGA----------------DPSVQMIAALATFSVPFLIRPLGGLFFGM 79 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHhhCCCC----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678889999999987554 77777776421 22 11222 257788999999999999
Q ss_pred HHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHH--------HHHHHHHHhhhhhhhhhhhh--hccccc-ccccccccch
Q 027462 113 VTRAFGRKASILVGGTAFLAGSAIGGAALNIYM--------LIFGRVLLGVGIGFTNQCRY--ISQKWH-HQNTEEHSPL 181 (223)
Q Consensus 113 l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~--------l~v~r~l~G~g~g~~~~~~~--~~~~~~-~~~~~~~~~~ 181 (223)
+.||+|||+++.++.+++.++.+++++++++.. +++.|+++|++.|...+... ..+.++ ++|+++.+..
T Consensus 80 l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~ 159 (490)
T PRK10642 80 LGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWL 159 (490)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHH
Confidence 999999999999999999999999999998864 78999999999999888643 666664 4588888888
Q ss_pred hhhcccCccchhhhhh---hccCCCCCcccccchhhhhhhhh
Q 027462 182 ASKYVLPLVSYPLIFS---ITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 182 ~~~~~~~~~~~~~~~~---~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
..++.+|.++++.+.. ...+.. .....+|||.|.+
T Consensus 160 ~~~~~~G~~lg~~~~~~~~~~~~~~----~~~~~gWR~~f~i 197 (490)
T PRK10642 160 DFGSIAGFVLGAGVVVLISTIVGEA----NFLDWGWRIPFFI 197 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHH----HhcCccHHHHHHH
Confidence 7777777776654332 122211 0112479998875
No 16
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.48 E-value=3.1e-13 Score=120.47 Aligned_cols=146 Identities=18% Similarity=0.127 Sum_probs=120.8
Q ss_pred HHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHH
Q 027462 32 FVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFAS 111 (223)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g 111 (223)
+.+...++.....+++++|....+... |.+.++++ +++++.+++.+...++..++.++.|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------~s~~~~g~~~~~~~~~~~~~~~~~g 71 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAA--PRMAQEFG------------------LDVAQMGWAFSAGILGLLPGALLGG 71 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhC------------------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445455666667778888887776554 78877774 6899999999999999999999999
Q ss_pred hHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hccccc-ccccccccchhhhcccC
Q 027462 112 TVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWH-HQNTEEHSPLASKYVLP 188 (223)
Q Consensus 112 ~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~ 188 (223)
++.||+|||+++..+.++..++.+++++++++..+++.|++.|++.+...+... ..+.++ ++|+++.+.......+|
T Consensus 72 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 151 (406)
T PRK11551 72 RLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFG 151 (406)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888888999999999999999999887766542 555564 45888999988888888
Q ss_pred ccchhhhhh
Q 027462 189 LVSYPLIFS 197 (223)
Q Consensus 189 ~~~~~~~~~ 197 (223)
..+++.+..
T Consensus 152 ~~~~~~~~~ 160 (406)
T PRK11551 152 GALASVIGV 160 (406)
T ss_pred HHHHHHHHH
Confidence 888876543
No 17
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.48 E-value=2.9e-13 Score=121.17 Aligned_cols=121 Identities=12% Similarity=0.044 Sum_probs=103.6
Q ss_pred cCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHH
Q 027462 58 TSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIG 137 (223)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~ 137 (223)
..+|.+.++++ ++..+.+++.+.+.++..+++++.|++.||+|||+++..+..+..++.+++
T Consensus 30 ~~lp~i~~~~~------------------~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~ 91 (393)
T PRK09705 30 PLLPQLRQASG------------------MSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMR 91 (393)
T ss_pred hhHHHHHHHhC------------------CCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 33588888875 799999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccccccccccchhhhcccCccchhhhh
Q 027462 138 GAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHHQNTEEHSPLASKYVLPLVSYPLIF 196 (223)
Q Consensus 138 ~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (223)
+++++++.+++.|+++|++.+...+... .++.+++||+++++...+.-.+|..+++.+.
T Consensus 92 ~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~ 152 (393)
T PRK09705 92 ELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAIT 152 (393)
T ss_pred HHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998766544 5566677789999988776655555555443
No 18
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.46 E-value=4.4e-13 Score=122.62 Aligned_cols=159 Identities=19% Similarity=0.329 Sum_probs=127.9
Q ss_pred HHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHh
Q 027462 33 VVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFAST 112 (223)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~ 112 (223)
.+.....+.++.++.+++....++. +|.+.++++ +++.+.+++.+.+.++..++.++.|+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~------------------~s~~~~~~~~~~~~~~~~~~~~~~g~ 77 (496)
T PRK03893 18 QWKAFSAAWLGYLLDGFDFVLITLV--LTEVQGEFG------------------LTTVQAASLISAAFISRWFGGLLLGA 77 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhC------------------CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555666667778888776544 377777764 68999999999999999999999999
Q ss_pred HHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCc
Q 027462 113 VTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPL 189 (223)
Q Consensus 113 l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~ 189 (223)
+.||+|||+.++++.++..++.++.++++++..+++.|++.|++.+...+... ..+.+++ +|+++++.....+.+|.
T Consensus 78 l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 157 (496)
T PRK03893 78 MGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGA 157 (496)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998887666543 5566655 48999999999999999
Q ss_pred cchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462 190 VSYPLIFSITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 190 ~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
+++|.+..-+.+ ..+|||.+.+
T Consensus 158 ~~~~~~~~~l~~---------~~~w~~~f~~ 179 (496)
T PRK03893 158 VVAAQVYSLVVP---------VWGWRALFFI 179 (496)
T ss_pred HHHHHHHHHHhc---------cCCHHHHHHH
Confidence 988876665543 2468877654
No 19
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.44 E-value=1.6e-13 Score=124.81 Aligned_cols=155 Identities=17% Similarity=0.250 Sum_probs=126.1
Q ss_pred HHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhh
Q 027462 37 CIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRA 116 (223)
Q Consensus 37 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr 116 (223)
...+.++.++..+|..+.+.. +|.+.++++ .+..+.+|+.+.+.++..++.++.|++.||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~g------------------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr 63 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVA--IPTIAGDLG------------------SSLSQVQWVITSYMLANAISIPLTGWLAKR 63 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHhcC------------------CChhhhhHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344555667778888877644 488877775 588899999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccchh
Q 027462 117 FGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYP 193 (223)
Q Consensus 117 ~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 193 (223)
+|||+.++++.++..++.++++.++++..+++.|+++|++.+...+... ..+.+++ +|.++++.......+|..++|
T Consensus 64 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~ 143 (485)
T TIGR00711 64 FGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGP 143 (485)
T ss_pred hCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999888776543 6666654 589999999999989888888
Q ss_pred hhhhhccCCCCCcccccchhhhhhhhh
Q 027462 194 LIFSITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 194 ~~~~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
.+..-+.. ..+|||.+.+
T Consensus 144 ~~~~~l~~---------~~~w~~~f~~ 161 (485)
T TIGR00711 144 TLGGWIIE---------NYHWRWIFLI 161 (485)
T ss_pred ccHhHhcc---------CcCceehhhh
Confidence 76554433 2357766544
No 20
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.44 E-value=1.1e-12 Score=117.52 Aligned_cols=125 Identities=14% Similarity=0.124 Sum_probs=107.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY- 165 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~- 165 (223)
+++++.++..+...++..++.++.|++.||+|||+.++.+.++..++.++++++++++.+++.|++.|++.+...+...
T Consensus 52 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 131 (394)
T PRK10213 52 ISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSAS 131 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999988766543
Q ss_pred -hcccccc-cccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462 166 -ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 166 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
.++.+++ +|+++.+......++|.+++|.+..-+.+ ..+|||.|.+
T Consensus 132 ~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~---------~~gw~~~f~~ 179 (394)
T PRK10213 132 LTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE---------LIGWRNVFNA 179 (394)
T ss_pred HHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------hcCHHHHHHH
Confidence 5566644 58999999999999999888887665543 2468887764
No 21
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.43 E-value=4.4e-13 Score=120.95 Aligned_cols=156 Identities=13% Similarity=0.193 Sum_probs=121.4
Q ss_pred HHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHh
Q 027462 36 SCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTR 115 (223)
Q Consensus 36 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~d 115 (223)
.+....+..+....+..++. .++|.+.++++ .+..+.++..+.+.++..++.++.|++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~--p~l~~i~~~~~------------------~~~~~~~~~~s~~~~~~~~~~~~~G~l~d 76 (413)
T PRK15403 17 FPMALILYDFAAYLTTDLIQ--PGIINVVRDFN------------------ADVSLAPASVSLYLAGGMALQWLLGPLSD 76 (413)
T ss_pred HHHHHHHHHHHHHHHHHhhc--cCHHHHHHHhC------------------CCHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34444555555566666664 34577777775 58899999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccch
Q 027462 116 AFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSY 192 (223)
Q Consensus 116 r~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 192 (223)
|+|||++++.+.++..++.+++++++++..+++.|+++|++.+...+..+ ..+.+++ +++++++.......+|.+++
T Consensus 77 r~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 156 (413)
T PRK15403 77 RIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIG 156 (413)
T ss_pred HcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998876444333 4445544 47888998888888888888
Q ss_pred hhhhhhccCCCCCcccccchhhhhhhhh
Q 027462 193 PLIFSITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 193 ~~~~~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
|.+..-+.. ..+|||.|.+
T Consensus 157 ~~lg~~l~~---------~~gw~~~f~~ 175 (413)
T PRK15403 157 PLSGAALMH---------FVHWKVLFAI 175 (413)
T ss_pred HHHHHHHHH---------hcCHHHHHHH
Confidence 775543321 2468888765
No 22
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.43 E-value=4.3e-13 Score=120.97 Aligned_cols=156 Identities=18% Similarity=0.173 Sum_probs=119.7
Q ss_pred CccCCCchHHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHH
Q 027462 23 RYYNGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIS 102 (223)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg 102 (223)
++.....+|+.+...+++.++.+.++||....+..+ |-+...|.... ... -++++...+.+..+..+|
T Consensus 29 ~~~~~g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt--~il~~lY~~~~--------~~~--g~~ps~i~~~Vn~~A~vG 96 (538)
T KOG0252|consen 29 TRTSEGLQWKHFKAIIIAGMGFFTDSYDLFSISLVT--KILGYLYYHGD--------ESG--GHYPSGVLALVNAAALVG 96 (538)
T ss_pred hccccchhHHHHHHHHHhhhhhcccchhhhhHHHHH--HHHHHHhcCCC--------CCC--CcCCchHHHHHHHHHHHH
Confidence 344556689999999999999999999999988665 44444443211 001 235777888899999999
Q ss_pred HHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh-------hHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-
Q 027462 103 GLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL-------NIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH- 172 (223)
Q Consensus 103 ~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~-------~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~- 172 (223)
.++|+++.|++.|++|||+++...++++++++++++++. -..++++.|++.|+|.|+-+|+.+ .|....+
T Consensus 97 ti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~ 176 (538)
T KOG0252|consen 97 TIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKK 176 (538)
T ss_pred HHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhc
Confidence 999999999999999999999999999999999888762 136889999999999999999855 5666644
Q ss_pred cccccccchhhhcccCcc
Q 027462 173 QNTEEHSPLASKYVLPLV 190 (223)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~ 190 (223)
||+..++.+-+--+.|.+
T Consensus 177 ~RGa~iaavFa~Qg~Gil 194 (538)
T KOG0252|consen 177 TRGAFIAAVFAMQGFGIL 194 (538)
T ss_pred cccceeEEEEEecchhHh
Confidence 366666665554444433
No 23
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.43 E-value=3.8e-13 Score=119.65 Aligned_cols=151 Identities=15% Similarity=0.123 Sum_probs=119.8
Q ss_pred HhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchh
Q 027462 41 ATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRK 120 (223)
Q Consensus 41 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk 120 (223)
....+..++......+. +|.+.++++ ++.++.+++.+.+.++..+++++.|++.||+|||
T Consensus 9 ~~~~~~~~~~~~~~~~~--l~~~~~~~g------------------~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r 68 (382)
T PRK10091 9 ALGTFGLGMAEFGIMGV--LTELAHDVG------------------ISIPAAGHMISYYALGVVVGAPIIALFSSRYSLK 68 (382)
T ss_pred HHHHHHHHhhHHHHHhC--hHHHHHHcC------------------CCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccH
Confidence 33445556666555544 378888775 6899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccchhhhhh
Q 027462 121 ASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFS 197 (223)
Q Consensus 121 ~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (223)
+++.++.++..++.++++++++++.+++.|++.|++.+...+... .++.+++ ||+++++....+..+|..++|.+..
T Consensus 69 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~ 148 (382)
T PRK10091 69 HILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGT 148 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999999999999999999999887665433 5555544 4888899888888888887776544
Q ss_pred hccCCCCCcccccchhhhhhhhh
Q 027462 198 ITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 198 ~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
-... ..+|||.+.+
T Consensus 149 ~l~~---------~~gwr~~f~~ 162 (382)
T PRK10091 149 YLSQ---------EFSWRYTFLL 162 (382)
T ss_pred HHhh---------hccHHHHHHH
Confidence 3322 2468887765
No 24
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.42 E-value=5.5e-13 Score=115.97 Aligned_cols=125 Identities=13% Similarity=0.125 Sum_probs=104.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY- 165 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~- 165 (223)
+++++.+++.+.+.++..++.++.|++.||+|||+++.++.++..++.+.+++++++..+++.|++.|++.+...+...
T Consensus 35 ~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 114 (377)
T TIGR00890 35 VGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALN 114 (377)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999887654432
Q ss_pred -hcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462 166 -ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 166 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
..+.++++|+++.+....+.++|.++.+.+...+.. ..+|||.+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~~~~~f~~ 161 (377)
T TIGR00890 115 TAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVIN---------LEGVPAAFIY 161 (377)
T ss_pred HHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHHh---------cccHHHHHHH
Confidence 444456679999999999999998866554443332 2368877654
No 25
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.41 E-value=1.2e-12 Score=118.51 Aligned_cols=154 Identities=12% Similarity=0.105 Sum_probs=121.3
Q ss_pred HHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhh
Q 027462 38 IVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAF 117 (223)
Q Consensus 38 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~ 117 (223)
....++.++..++...++.. +|.+.++++ +++++.+++.+.+.++..++.++.|++.||+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g------------------~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~ 85 (434)
T PRK11663 26 ITMYLGYALFYFTRKSFNAA--MPEMLADLG------------------LSRSDIGLLATLFYITYGVSKFVSGIVSDRS 85 (434)
T ss_pred HHHHHHHHHHHHhhhhHHHh--hHHHHHhcC------------------CCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc
Confidence 33444455555555444433 477777764 6899999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccchhh
Q 027462 118 GRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPL 194 (223)
Q Consensus 118 Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 194 (223)
|||+++.++.++..++.++.++++++..+++.|++.|++.|...+... ..+.+++ +|+++++.......+|.+++|.
T Consensus 86 g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~ 165 (434)
T PRK11663 86 NARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPL 165 (434)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998887655433 5555554 5999999999999999998887
Q ss_pred hhhhccCCCCCcccccchhhhhhhhh
Q 027462 195 IFSITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 195 ~~~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
+..-+.+ ..+|||.+.+
T Consensus 166 ~~~~l~~---------~~gw~~~f~~ 182 (434)
T PRK11663 166 VVGAIAL---------HYGWRYGMMI 182 (434)
T ss_pred HHHHHHH---------cccHHHHHHH
Confidence 6655443 2468877654
No 26
>PRK10133 L-fucose transporter; Provisional
Probab=99.39 E-value=2.5e-12 Score=117.15 Aligned_cols=139 Identities=12% Similarity=0.167 Sum_probs=111.3
Q ss_pred HHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhc
Q 027462 39 VAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFG 118 (223)
Q Consensus 39 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~G 118 (223)
...+..++.+++....+.. .|.++++++ +++.+.+++.+.+.++..+++++.|++.||+|
T Consensus 30 ~~~~~~~~~~~~~~~~~~~--~p~i~~~~~------------------~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G 89 (438)
T PRK10133 30 LLCSLFFLWAVANNLNDIL--LPQFQQAFT------------------LTNFQAGLIQSAFYFGYFIIPIPAGILMKKLS 89 (438)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHhC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444556667776666544 377777774 69999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHhhhhhhhhhhhh--hccccccc-ccccccchhhhcccCccch
Q 027462 119 RKASILVGGTAFLAGSAIG---GAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHHQ-NTEEHSPLASKYVLPLVSY 192 (223)
Q Consensus 119 rk~~~~~~~l~~~~~~l~~---~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 192 (223)
||+++..+.+++.++.+++ +.++++..++++|+++|+|.|...+..+ ..+..+++ |....+..+..+++|..++
T Consensus 90 ~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g 169 (438)
T PRK10133 90 YKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIA 169 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998775 4678999999999999999998877654 33323333 4446888899999999988
Q ss_pred hhhhh
Q 027462 193 PLIFS 197 (223)
Q Consensus 193 ~~~~~ 197 (223)
|.+..
T Consensus 170 ~~~g~ 174 (438)
T PRK10133 170 VVFGQ 174 (438)
T ss_pred HHHHH
Confidence 87654
No 27
>PRK09952 shikimate transporter; Provisional
Probab=99.39 E-value=4e-12 Score=115.51 Aligned_cols=162 Identities=14% Similarity=0.176 Sum_probs=114.8
Q ss_pred HHHHHHhhhhhhhhhccccccccCcHH-HHHhhcchhhhhcccccccccccCCChhHHHHHH-----HHHHHHHHHHHHh
Q 027462 36 SCIVAATGGLIFGFDIGISGGVTSMEP-FLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFT-----SSLYISGLIASLF 109 (223)
Q Consensus 36 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-----s~~~lg~~~~~~~ 109 (223)
......++.++..||..+++.+. |. +.+++++. .++. .+++. +..+++..+++++
T Consensus 23 ~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~~----------------~~~~-~~~~~~~~~~~~~~~~~~~g~~~ 83 (438)
T PRK09952 23 AALGSFAGAVVDWYDFLLYGITA--ALVFNREFFPQ----------------VSPA-MGTLAAFATFGVGFLFRPLGGVV 83 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCC----------------CCcH-HHHHHHHHHHHHHHHHHhhHHHH
Confidence 34555667788899998876442 33 33444321 2343 34433 3455677899999
Q ss_pred HHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccc
Q 027462 110 ASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIY--------MLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEH 178 (223)
Q Consensus 110 ~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~--------~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~ 178 (223)
.|++.||+|||++++++.+++.++.+++++++++. .+++.|+++|++.|...+... .++.+++ +|++..
T Consensus 84 ~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~ 163 (438)
T PRK09952 84 FGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYS 163 (438)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHH
Confidence 99999999999999999999999999999998876 588899999999998877543 5665644 488888
Q ss_pred cchhhhcccCccchhhhhh---hccCCCCCcccccchhhhhhhhh
Q 027462 179 SPLASKYVLPLVSYPLIFS---ITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~---~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
+....++.+|.+++..+.. ...+.+ .....+||+.|.+
T Consensus 164 ~~~~~g~~~G~~l~~~~~~~l~~~~~~~----~~~~~gWr~~f~~ 204 (438)
T PRK09952 164 SGVQVGYGVGLLLSTGLVSLISMMTTDE----QFLSWGWRIPFLF 204 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHH----HhhccChHHHHHH
Confidence 8888888888887765433 222211 1122479888764
No 28
>PRK10504 putative transporter; Provisional
Probab=99.38 E-value=1.3e-12 Score=118.90 Aligned_cols=150 Identities=13% Similarity=0.152 Sum_probs=121.0
Q ss_pred hhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhH
Q 027462 42 TGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKA 121 (223)
Q Consensus 42 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~ 121 (223)
.+.++..++...+++ .+|.+.++++ .++.+.+++.+.+.++..++.++.|++.||+|||+
T Consensus 17 ~~~~~~~~~~~~~~~--~~p~~~~~~g------------------~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~ 76 (471)
T PRK10504 17 FGFFMQSLDTTIVNT--ALPSMAQSLG------------------ESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRN 76 (471)
T ss_pred HHHHHHHHhHHHHHH--HHHHHHHHhC------------------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 344556666666553 3588887764 68999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccchhhhhhh
Q 027462 122 SILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSI 198 (223)
Q Consensus 122 ~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (223)
+++.+.++..++.+.++++++++.+++.|+++|++.+...+... ..+.+++ +|.++++.+.....+|.+++|.+...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~ 156 (471)
T PRK10504 77 IFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGL 156 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999988888888889999999999999999988776543 5555554 47889999998888999888887655
Q ss_pred ccCCCCCcccccchhhhhhhhh
Q 027462 199 TAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 199 ~~p~~~rg~~~~~~~~~~~~~l 220 (223)
+.. ..+|||.|.+
T Consensus 157 l~~---------~~gw~~~f~~ 169 (471)
T PRK10504 157 LVE---------YASWHWIFLI 169 (471)
T ss_pred HHh---------hccHHHHHHH
Confidence 543 2368888765
No 29
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.37 E-value=1.2e-14 Score=131.45 Aligned_cols=146 Identities=27% Similarity=0.457 Sum_probs=104.9
Q ss_pred HHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhc
Q 027462 39 VAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFG 118 (223)
Q Consensus 39 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~G 118 (223)
+.+++.+.+|||.+.++...........+..+ +.. .+++.++.+.+++.+...+|..+|+++.|++.||+|
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~------~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~G 74 (451)
T PF00083_consen 4 IASLGGFLFGYDLGLIGSFASLLGFLQFFGWS---SSE------SSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYG 74 (451)
T ss_pred eeHHHHHHHHHHHHHHhhHHhhhhhhhccccc---ccc------ccccchHHHHHHHHHHHHhhhccccccccccccccc
Confidence 35566788999999987666444433333211 110 001114567899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHhhhhhhhhhhhh--hccccccc-ccccccchhhhcccCccch
Q 027462 119 RKASILVGGTAFLAGSAIGGAAL---NIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHHQ-NTEEHSPLASKYVLPLVSY 192 (223)
Q Consensus 119 rk~~~~~~~l~~~~~~l~~~~a~---~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 192 (223)
||+.++++.++..++.++.++++ ++..++++|++.|++.|....... ..+..+++ |++..+.....+.+|.+++
T Consensus 75 Rk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~ 154 (451)
T PF00083_consen 75 RKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLA 154 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999 999999999999999999888721 33333222 4444444444444444444
Q ss_pred h
Q 027462 193 P 193 (223)
Q Consensus 193 ~ 193 (223)
.
T Consensus 155 ~ 155 (451)
T PF00083_consen 155 S 155 (451)
T ss_pred c
Confidence 3
No 30
>PRK03699 putative transporter; Provisional
Probab=99.37 E-value=5.2e-12 Score=112.79 Aligned_cols=153 Identities=15% Similarity=0.166 Sum_probs=119.8
Q ss_pred HHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhch
Q 027462 40 AATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGR 119 (223)
Q Consensus 40 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Gr 119 (223)
..++.++.+.+...++.+. |++.++++ ++.++.+++.+.+.++..++.++.|++.||+||
T Consensus 12 ~~~~~~~~~~~~~~~g~~~--~~i~~~~~------------------~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~ 71 (394)
T PRK03699 12 SFLSYALTGALVIVTGMVM--GPIAEYFN------------------LPVSSMSNTFTFLNAGILISIFLNAWLMEIIPL 71 (394)
T ss_pred HHHHHHHHHHHHHHHhhhh--HHHHHHhC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3444556666666665443 78887774 699999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccchhhhh
Q 027462 120 KASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIF 196 (223)
Q Consensus 120 k~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 196 (223)
|+++..+.++..++.++.++++++..+++.|++.|++.|...+... ..+.+++ +|..+.+.....+++|.+++|.+.
T Consensus 72 r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 151 (394)
T PRK03699 72 KRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIA 151 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887665433 5566655 478888888788888888787765
Q ss_pred hhccCCCCCcccccchhhhhhhhh
Q 027462 197 SITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 197 ~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
.-.... ..+||+.+.+
T Consensus 152 ~~l~~~--------~~gw~~~f~~ 167 (394)
T PRK03699 152 AYLLAR--------SIEWYWVYAC 167 (394)
T ss_pred HHHHhc--------cccHHHHHHH
Confidence 443321 1368877653
No 31
>PRK15075 citrate-proton symporter; Provisional
Probab=99.36 E-value=4.8e-12 Score=114.59 Aligned_cols=139 Identities=14% Similarity=0.191 Sum_probs=99.7
Q ss_pred HHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHH-HHHHH-----HHHHHHHHHh
Q 027462 36 SCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAA-FTSSL-----YISGLIASLF 109 (223)
Q Consensus 36 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~~s~~-----~lg~~~~~~~ 109 (223)
......++.++..+|...++... |.+.++++ .++.+.++ ..+.. .+...+++++
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~--~~i~~~~~------------------~~~~~~~~~~~~~~~~~~~~l~~~ig~~~ 75 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYA--TAIAKTFF------------------PAGNEFASLMLTFAVFGAGFLMRPLGAIV 75 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhC------------------CCCCchHHHHHHHHHHHHHHHHhhhHHHH
Confidence 35556668899999999987554 88888885 24444433 22222 2333578899
Q ss_pred HHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccc
Q 027462 110 ASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIY--------MLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEH 178 (223)
Q Consensus 110 ~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~--------~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~ 178 (223)
.|++.||+|||+.++.+.++..++.+++++++++. .+++.|+++|++.|...+... .++.+++ +|.++.
T Consensus 76 ~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~ 155 (434)
T PRK15075 76 LGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYT 155 (434)
T ss_pred HHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHH
Confidence 99999999999999999999999999999998876 468899999999988776522 4444433 366666
Q ss_pred cchhhhcccCccchhh
Q 027462 179 SPLASKYVLPLVSYPL 194 (223)
Q Consensus 179 ~~~~~~~~~~~~~~~~ 194 (223)
+.......+|.++++.
T Consensus 156 ~~~~~~~~~g~~~g~~ 171 (434)
T PRK15075 156 SWQSASQQVAVVFAAL 171 (434)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666555555544443
No 32
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.36 E-value=1.1e-11 Score=110.28 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=91.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh--------hhHHHHHHHHHHHhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA--------LNIYMLIFGRVLLGVGI 157 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a--------~~~~~l~v~r~l~G~g~ 157 (223)
+.++++.+++.+.+.++..+++++.|++.||+|||++++++.++..++.+.+.++ .++..+++.|++.|++.
T Consensus 47 g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 126 (399)
T PRK05122 47 GFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGE 126 (399)
T ss_pred CccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhH
Confidence 3689999999999999999999999999999999999999998887776655443 24667899999999999
Q ss_pred hhhhhhhh--hcccc-cccccccccchhhhcccCccchhhhhhhc
Q 027462 158 GFTNQCRY--ISQKW-HHQNTEEHSPLASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 158 g~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
+...+... ..+.+ +++|+++.+.......+|.+++|.+..-+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l 171 (399)
T PRK05122 127 SLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLL 171 (399)
T ss_pred HhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHH
Confidence 88776543 34445 34588999988888888888777765444
No 33
>TIGR00895 2A0115 benzoate transport.
Probab=99.36 E-value=5.4e-12 Score=110.66 Aligned_cols=141 Identities=18% Similarity=0.147 Sum_probs=112.4
Q ss_pred HhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchh
Q 027462 41 ATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRK 120 (223)
Q Consensus 41 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk 120 (223)
.+..+..+++....+.. .|.+.++++ +++.+.+++.+...++..++.++.|++.||+|||
T Consensus 23 ~~~~~~~~~~~~~~~~~--~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 82 (398)
T TIGR00895 23 FLIMLMDGYDLAAMGFA--APAISAEWG------------------LDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRK 82 (398)
T ss_pred HHHHHHHHHHHHHHHhh--HHHHhhccC------------------CCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhH
Confidence 33445555555554433 366666653 6889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccchhhhhh
Q 027462 121 ASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFS 197 (223)
Q Consensus 121 ~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (223)
+.+..+.++..++.++..++++++.+++.|++.|++.+...+... ..+.+++ +|+++++.....+.+|..++|.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 162 (398)
T TIGR00895 83 RVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAG 162 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHH
Confidence 999999999999988888899999999999999999887776543 5555544 4899999999999998888887665
Q ss_pred hccC
Q 027462 198 ITAP 201 (223)
Q Consensus 198 ~~~p 201 (223)
.+.+
T Consensus 163 ~l~~ 166 (398)
T TIGR00895 163 WLIP 166 (398)
T ss_pred HHhh
Confidence 5543
No 34
>PRK12382 putative transporter; Provisional
Probab=99.35 E-value=2.3e-11 Score=108.20 Aligned_cols=113 Identities=15% Similarity=0.125 Sum_probs=90.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHH---h-----hhhhHHHHHHHHHHHhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIG---G-----AALNIYMLIFGRVLLGVGI 157 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~---~-----~a~~~~~l~v~r~l~G~g~ 157 (223)
++|.++.+++.+.+.++..+++++.|++.||+|||++++.+.++..++.+.. + ..+++..+++.|+++|++.
T Consensus 47 g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 126 (392)
T PRK12382 47 GFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGE 126 (392)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999999999999999999888776654322 1 1357888999999999998
Q ss_pred hhhhhhhh--hcccc-cccccccccchhhhcccCccchhhhhhh
Q 027462 158 GFTNQCRY--ISQKW-HHQNTEEHSPLASKYVLPLVSYPLIFSI 198 (223)
Q Consensus 158 g~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (223)
+...+... ..+.. +++|+++++..+....+|.+++|.+..-
T Consensus 127 ~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~ 170 (392)
T PRK12382 127 SQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLL 170 (392)
T ss_pred HHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 87665432 33444 4459999999988888888888776543
No 35
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.35 E-value=2.4e-12 Score=114.85 Aligned_cols=134 Identities=10% Similarity=-0.019 Sum_probs=102.8
Q ss_pred cHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh
Q 027462 60 MEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA 139 (223)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~ 139 (223)
+|.+.++++ +++++.+++.+.+.+++.++.++.|++.||+|||+++..+.+....+.+....
T Consensus 14 lp~i~~~~~------------------~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~ 75 (368)
T TIGR00903 14 LSLVAEDID------------------VSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLD 75 (368)
T ss_pred HHHHHHHhC------------------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence 478888775 69999999999999999999999999999999998876555444444332333
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhhhh-hcccccc-cccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhh
Q 027462 140 ALNIYMLIFGRVLLGVGIGFTNQCRY-ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWL 217 (223)
Q Consensus 140 a~~~~~l~v~r~l~G~g~g~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~ 217 (223)
++++.++++.|++.|++.+...+... .++.+.+ +|+++.+....+..+|.++++.+..-+.+ ..+||+.
T Consensus 76 ~~~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~---------~~gWr~~ 146 (368)
T TIGR00903 76 PFNYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT---------AGGLQLL 146 (368)
T ss_pred hccHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------ccchHHH
Confidence 37899999999999999886443322 5555544 59999999999999999988876655543 2478887
Q ss_pred hhh
Q 027462 218 LLL 220 (223)
Q Consensus 218 ~~l 220 (223)
|.+
T Consensus 147 f~~ 149 (368)
T TIGR00903 147 IIP 149 (368)
T ss_pred HHH
Confidence 754
No 36
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.35 E-value=4.7e-12 Score=116.39 Aligned_cols=108 Identities=11% Similarity=0.011 Sum_probs=89.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY- 165 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~- 165 (223)
++..+.+++.+.+.++..++.++.|++.||+|||+++..+.++..++.++.++++++..+++.|++.|++.+...+...
T Consensus 68 ls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~ 147 (476)
T PLN00028 68 LTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYW 147 (476)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 6899999999999999999999999999999999999999999999888889999999999999999998876443322
Q ss_pred hcccccc-cccccccchhhhcccCccchhh
Q 027462 166 ISQKWHH-QNTEEHSPLASKYVLPLVSYPL 194 (223)
Q Consensus 166 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 194 (223)
.++.+++ +|+++.+.......+|..+++.
T Consensus 148 i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~ 177 (476)
T PLN00028 148 MSTMFNGKIVGTANGIAAGWGNLGGGVTQL 177 (476)
T ss_pred HHHhcChhheeHHHHHHHHHHHHHHHHHHH
Confidence 5666654 5899999887655555554443
No 37
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.35 E-value=6.3e-12 Score=111.68 Aligned_cols=140 Identities=18% Similarity=0.216 Sum_probs=116.1
Q ss_pred hhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhH
Q 027462 42 TGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKA 121 (223)
Q Consensus 42 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~ 121 (223)
.+.++.+.+.++.++. +|.++++++ .++.+.+++.+.+.++..+++++.|++.||+|||+
T Consensus 13 ~~~~~~~~~~~~~~~~--lp~~~~~~~------------------~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~ 72 (381)
T PRK03633 13 CGLLLLTLAIAVLNTL--VPLWLAQEH------------------LPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNR 72 (381)
T ss_pred HHHHHHHHhhhhHHHH--HHHHHHHcC------------------CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445556666666545 488888774 68999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hccccc-ccccccccchhhhcccCccchhhhhhh
Q 027462 122 SILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWH-HQNTEEHSPLASKYVLPLVSYPLIFSI 198 (223)
Q Consensus 122 ~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (223)
++..+.++..++.+..+++++++.+++.|++.|++.+...+... ..+.+. ++|+++++.....+.+|..++|.+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 152 (381)
T PRK03633 73 SYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSK 152 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999887765432 444453 358999999999999999999887666
Q ss_pred ccC
Q 027462 199 TAP 201 (223)
Q Consensus 199 ~~p 201 (223)
..+
T Consensus 153 l~~ 155 (381)
T PRK03633 153 VST 155 (381)
T ss_pred ccc
Confidence 544
No 38
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.34 E-value=5.2e-12 Score=118.71 Aligned_cols=125 Identities=22% Similarity=0.393 Sum_probs=95.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-h
Q 027462 88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY-I 166 (223)
Q Consensus 88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~-~ 166 (223)
+.....|+.+.+.++..++.++.|+++|.||||..++++.++.++|.++++-++|...++.+..+.|+|.|....... +
T Consensus 76 ~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~~~~i 155 (599)
T PF06609_consen 76 GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELAALAI 155 (599)
T ss_pred CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 567888999999999999999999999999999999999999999999999999999999999999999877654322 4
Q ss_pred ccccccc-ccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhhc
Q 027462 167 SQKWHHQ-NTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLLH 221 (223)
Q Consensus 167 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l~ 221 (223)
++....| |...+........+.+.++|.+...... ..+|||+|++.
T Consensus 156 sEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~---------~~~WRw~~~~~ 202 (599)
T PF06609_consen 156 SELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA---------HSGWRWIFYIF 202 (599)
T ss_pred HHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc---------CCCcchHHHHH
Confidence 4444333 5555544444444444445554433332 24899998763
No 39
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.33 E-value=7.5e-12 Score=114.37 Aligned_cols=125 Identities=14% Similarity=0.168 Sum_probs=100.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHhhhhhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIF-GRVLLGVGIGFTNQCRY 165 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v-~r~l~G~g~g~~~~~~~ 165 (223)
+++.+.+++.+.+.++..++.++.|++.||+|||++++.+.++..++.+++++++++..+++ .|++.|++.+...+...
T Consensus 51 ~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~ 130 (455)
T TIGR00892 51 ATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSL 130 (455)
T ss_pred cchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHH
Confidence 68999999999999999999999999999999999999999999999999999988887765 57899998886533322
Q ss_pred --hcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462 166 --ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 166 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
..+.++++|+++.+....+..+|..++|.+..-+.. ..+|||.|.+
T Consensus 131 ~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~---------~~gwr~~f~~ 178 (455)
T TIGR00892 131 TMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFE---------SFGWRGSFLI 178 (455)
T ss_pred HHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHH---------HhChHHHHHH
Confidence 444556679999999999999998888775544433 2357777654
No 40
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.33 E-value=1.9e-12 Score=116.88 Aligned_cols=139 Identities=14% Similarity=0.119 Sum_probs=109.5
Q ss_pred HHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHH
Q 027462 35 LSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVT 114 (223)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~ 114 (223)
+..++.++.+++.-.|...+.... ++.+++| +++++..+.+++.+.+...++.|++|++.
T Consensus 33 ~~l~il~~vnlmny~Dr~~iagv~--~~v~~~f------------------ni~~s~~Gll~~vf~v~~~i~sPl~gyLa 92 (493)
T KOG1330|consen 33 LTLVILCLVNLMNYADRYTIAGVL--KEVQTYF------------------NISDSELGLLQTVFIVVFMIASPLFGYLA 92 (493)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhh--HHHHHhc------------------CCCchhccchhHHHHHHHHHHHHHHHHHH
Confidence 345556666777777777665432 5555555 47999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccc
Q 027462 115 RAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVS 191 (223)
Q Consensus 115 dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~ 191 (223)
||++||+++.+|..++.++.+.++++..++++.++|.+.|+|.+...+... +++-+++ +|++.++.+.-.-.+|..+
T Consensus 93 dryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsgl 172 (493)
T KOG1330|consen 93 DRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGL 172 (493)
T ss_pred hhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccce
Confidence 999999999999999999999999999999999999999999999888733 5555544 4666666655544444444
Q ss_pred hh
Q 027462 192 YP 193 (223)
Q Consensus 192 ~~ 193 (223)
+.
T Consensus 173 G~ 174 (493)
T KOG1330|consen 173 GY 174 (493)
T ss_pred eE
Confidence 43
No 41
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.33 E-value=1.4e-11 Score=110.19 Aligned_cols=150 Identities=15% Similarity=0.164 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHh
Q 027462 30 TVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLF 109 (223)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~ 109 (223)
+.+.++..+...+..+...++..++.+. +|.+.++++ +++.+.++..+.+.++..++.++
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~------------------~s~~~~~~~~~~~~~~~~~~~~~ 67 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPG--MLAVVEDFN------------------AGAEWVPTSMTAYLAGGMFLQWL 67 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcc--hHHHHHHhC------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666667666666666543 477877775 68999999999999999999999
Q ss_pred HHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hccccccc-ccccccchhhhcc
Q 027462 110 ASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHHQ-NTEEHSPLASKYV 186 (223)
Q Consensus 110 ~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~ 186 (223)
.|++.||+|||+++.++.++..++.+....+++++.+++.|++.|++.+...+... .++.++++ |.++.+.......
T Consensus 68 ~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 147 (406)
T PRK15402 68 LGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVAL 147 (406)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888999999999999999998887655433 55556554 6777777777777
Q ss_pred cCccchhhhhhhc
Q 027462 187 LPLVSYPLIFSIT 199 (223)
Q Consensus 187 ~~~~~~~~~~~~~ 199 (223)
++.+++|.+..-+
T Consensus 148 ~~~~~g~~i~~~l 160 (406)
T PRK15402 148 LAPLLGPLVGAAL 160 (406)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777765443
No 42
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.32 E-value=4.9e-12 Score=110.07 Aligned_cols=129 Identities=11% Similarity=-0.022 Sum_probs=107.9
Q ss_pred hhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHH
Q 027462 46 IFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILV 125 (223)
Q Consensus 46 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~ 125 (223)
++.++...++.. +|.+.++++ +++.+.+++.+...++..++.++.|++.||+|||+.+.+
T Consensus 6 ~~~~~~~~~~~~--~~~~~~~~g------------------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 65 (379)
T TIGR00881 6 AYYLVRKNFALA--MPYLVEEIG------------------LSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPI 65 (379)
T ss_pred HHHHhHHhhhhh--hHHHHHHhC------------------CCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHH
Confidence 334445444433 377777664 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccchhh
Q 027462 126 GGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPL 194 (223)
Q Consensus 126 ~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 194 (223)
+.++..++.++.+++++++.+++.|++.|++.+...+... .++.+++ +|+++.+.......+|.+++|.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 137 (379)
T TIGR00881 66 GLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPP 137 (379)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHH
Confidence 9999999999999999999999999999999887766544 5555554 4899999999999999998884
No 43
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.32 E-value=1.1e-11 Score=108.81 Aligned_cols=132 Identities=14% Similarity=0.102 Sum_probs=109.1
Q ss_pred hhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHH
Q 027462 48 GFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGG 127 (223)
Q Consensus 48 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~ 127 (223)
..+...+.+. +|.+.++++ .++++.+++.+.+.++..++.++.|++.||+|||+++..+.
T Consensus 18 ~~~~~~~~~~--~p~~~~~~g------------------~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~ 77 (385)
T TIGR00710 18 PLGIDMYLPA--FPEIAADLS------------------TPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGL 77 (385)
T ss_pred HHHHHHhccc--HHHHHHHhC------------------CCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHH
Confidence 4444444433 477777774 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccchhhhhhhc
Q 027462 128 TAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 128 l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
++..++.+....++++..+++.|++.|++.+...+... ..+.+++ +|+++++.......+|.+++|.+..-+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l 152 (385)
T TIGR00710 78 FIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYI 152 (385)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888766543 5555554 488899999998888888887765543
No 44
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.30 E-value=4.1e-12 Score=110.57 Aligned_cols=114 Identities=12% Similarity=-0.004 Sum_probs=100.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY- 165 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~- 165 (223)
+++.+.+++.+.+.++..++.++.|++.||+|||+++.++.++..++.++.+++++++.+++.|++.|++.+...+...
T Consensus 26 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 105 (399)
T TIGR00893 26 LSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIIL 105 (399)
T ss_pred CChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999888776543
Q ss_pred -hcccccc-cccccccchhhhcccCccchhhhhhhcc
Q 027462 166 -ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITA 200 (223)
Q Consensus 166 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
.++.+++ +|+++.+.......+|.+++|.+..-+.
T Consensus 106 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 142 (399)
T TIGR00893 106 IVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL 142 (399)
T ss_pred HHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 5566654 4889999999999999998887665443
No 45
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.29 E-value=1.7e-11 Score=110.85 Aligned_cols=143 Identities=17% Similarity=0.181 Sum_probs=115.0
Q ss_pred HHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhc
Q 027462 39 VAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFG 118 (223)
Q Consensus 39 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~G 118 (223)
.++...++.|++.++.+++. |.++++++ +++.+.+++.+.+.++..+++++.|++.||+|
T Consensus 7 ~~~~~f~~~G~~~~~~~~l~--~~~~~~~~------------------~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G 66 (410)
T TIGR00885 7 LITSLFALWGFANDITNPMV--PQFQQAFT------------------LTAFQAALVQSAFYGGYFIMAIPAAIFMKKLS 66 (410)
T ss_pred HHHHHHHHHHHHHHhHHHHH--HHHHHHhC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45556677788877776665 88888875 69999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHhhhhhhhhhhhh--hccccc-ccccccccchhhhcccCccch
Q 027462 119 RKASILVGGTAFLAGSAIGGA---ALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWH-HQNTEEHSPLASKYVLPLVSY 192 (223)
Q Consensus 119 rk~~~~~~~l~~~~~~l~~~~---a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 192 (223)
||+++.++.+++.++.++... .+++..+++.|++.|+|.|...+..+ .....+ ++|++..+..+....+|..++
T Consensus 67 ~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g 146 (410)
T TIGR00885 67 YKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIG 146 (410)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877544 35788999999999999998877543 333333 346777888888888888888
Q ss_pred hhhhhhccC
Q 027462 193 PLIFSITAP 201 (223)
Q Consensus 193 ~~~~~~~~p 201 (223)
|.+...+..
T Consensus 147 ~~i~~~l~~ 155 (410)
T TIGR00885 147 MVVAQQLIL 155 (410)
T ss_pred HHHHHHHHh
Confidence 877666543
No 46
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.28 E-value=2.2e-11 Score=111.77 Aligned_cols=96 Identities=17% Similarity=0.147 Sum_probs=78.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA-----LNIYMLIFGRVLLGVGIGFT 160 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a-----~~~~~l~v~r~l~G~g~g~~ 160 (223)
++++++.+++.+...++..+..++.|++.||+|.|+++.++.++..+..+..+++ +++..+++.|++.|++ |..
T Consensus 66 ~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~ 144 (462)
T PRK15034 66 NFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GAN 144 (462)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHh
Confidence 5899999999999999999999999999999999999999999999999888876 7999999999999998 555
Q ss_pred hhhhh--hcccccc-cccccccchh
Q 027462 161 NQCRY--ISQKWHH-QNTEEHSPLA 182 (223)
Q Consensus 161 ~~~~~--~~~~~~~-~~~~~~~~~~ 182 (223)
.+... ++.-+.+ +|+++.+...
T Consensus 145 f~~~~~~vs~wfp~~~rG~A~Gi~~ 169 (462)
T PRK15034 145 FASSMGNISFFFPKAKQGSALGING 169 (462)
T ss_pred HHHHHHHHHHHCCHhHhHHHHHHHH
Confidence 55521 3333433 2556665553
No 47
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.28 E-value=1.4e-11 Score=106.44 Aligned_cols=115 Identities=23% Similarity=0.404 Sum_probs=99.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY 165 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~ 165 (223)
+.++.+.+++.+.+.++..++.++.|++.||+|||+++.++.++..++.++..++++.+.+++.|++.|++.+...+...
T Consensus 28 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 107 (352)
T PF07690_consen 28 GLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASN 107 (352)
T ss_dssp TTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccccccccccc
Confidence 46899999999999999999999999999999999999999999999866666767777999999999999988877654
Q ss_pred --hcccccc-cccccccchhhhcccCccchhhhhhhcc
Q 027462 166 --ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITA 200 (223)
Q Consensus 166 --~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
+.+.+++ +|+++++.......+|.+++|.+..-+.
T Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 145 (352)
T PF07690_consen 108 ALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI 145 (352)
T ss_dssp HHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccccccchhhhhhhccccccchhhhhhhcccchhhhhh
Confidence 6666665 5999999999999999998888766555
No 48
>TIGR00898 2A0119 cation transport protein.
Probab=99.28 E-value=1.1e-11 Score=113.95 Aligned_cols=114 Identities=18% Similarity=0.215 Sum_probs=95.8
Q ss_pred cccCCC---hhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhh
Q 027462 83 NYCKFD---SQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGF 159 (223)
Q Consensus 83 ~~~~~s---~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~ 159 (223)
++++++ +.+.+++.+.+.++.+++.++.|+++||+|||++++++.++..++.++.++++++..+++.|++.|++.+.
T Consensus 117 ~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~ 196 (505)
T TIGR00898 117 TEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGG 196 (505)
T ss_pred EEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccc
Confidence 334466 88999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhh--hccccccc-ccccccchhhhcccCccchhhhh
Q 027462 160 TNQCRY--ISQKWHHQ-NTEEHSPLASKYVLPLVSYPLIF 196 (223)
Q Consensus 160 ~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 196 (223)
..+... .++.+.++ |.++.+.....+.+|.++.|.+.
T Consensus 197 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 236 (505)
T TIGR00898 197 IWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVA 236 (505)
T ss_pred hHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 777643 55555443 77777777777777777666543
No 49
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.26 E-value=4.7e-11 Score=102.50 Aligned_cols=115 Identities=23% Similarity=0.343 Sum_probs=100.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY- 165 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~- 165 (223)
.++.+.+++.+...++..++.++.|++.||+|||+.+.++.++..++.+...+++++..+++.|++.|++.+...+...
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 110 (352)
T cd06174 31 LSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAA 110 (352)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999888777643
Q ss_pred -hcccccc-cccccccchhhhcccCccchhhhhhhccC
Q 027462 166 -ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 166 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
.++..++ +|++.++.......+|..++|.+...+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 148 (352)
T cd06174 111 LIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148 (352)
T ss_pred HHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666655 58889999998888888888876665543
No 50
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.26 E-value=1.5e-11 Score=113.85 Aligned_cols=78 Identities=26% Similarity=0.240 Sum_probs=74.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~ 163 (223)
+.+.....+..+.+++|.++|+++.|+++||+|||++++.+.++..++.+..++++|+..+++.|++.|++.+.....
T Consensus 114 c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~ 191 (521)
T KOG0255|consen 114 CDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTV 191 (521)
T ss_pred eCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHH
Confidence 357888899999999999999999999999999999999999999999999999999999999999999999998888
No 51
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.25 E-value=3e-11 Score=104.72 Aligned_cols=125 Identities=14% Similarity=0.081 Sum_probs=104.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL-----NIYMLIFGRVLLGVGIGFTN 161 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~-----~~~~l~v~r~l~G~g~g~~~ 161 (223)
.++.+.+++.+...++..++.++.|++.||+|||++++.+.++..++.++..++. +++.+++.|++.|++.+...
T Consensus 31 ~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 110 (365)
T TIGR00900 31 GSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFT 110 (365)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999999999999999999999998888888877777 89999999999999998877
Q ss_pred hhhh--hcccccc-cccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462 162 QCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 162 ~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
+... ..+..++ +|+++.+.......+|.+++|.+..-+.. ..+|++.+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~---------~~g~~~~~~~ 163 (365)
T TIGR00900 111 PAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA---------TLGIKWAIWV 163 (365)
T ss_pred HHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------HhhHHHHHHH
Confidence 7643 5555544 58999999999999999988876554432 2467776654
No 52
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.25 E-value=2.2e-11 Score=108.40 Aligned_cols=113 Identities=20% Similarity=0.282 Sum_probs=94.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY- 165 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~- 165 (223)
+++.+.+++.+.+.++..++.++.|++.||+|||+.+.++.++..++.++..+++++..+++.|++.|++.+...+...
T Consensus 40 ~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 119 (394)
T PRK11652 40 VREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMART 119 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999998888889999999999999998876555432
Q ss_pred -hcccccc-cccccccchhhhcccCccchhhhhhhc
Q 027462 166 -ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 166 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
..+.+++ ++.++.+....+..++.+++|.+..-.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l 155 (394)
T PRK11652 120 LPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLL 155 (394)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444543 477788888888888888787765443
No 53
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.25 E-value=2.7e-11 Score=110.32 Aligned_cols=108 Identities=14% Similarity=-0.019 Sum_probs=89.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHhhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL----NIYMLIFGRVLLGVGIGFTNQ 162 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~----~~~~l~v~r~l~G~g~g~~~~ 162 (223)
+++++.+++.+...++..+++++.|++.||+|||++++++.++..++.+..++++ ++..+++.|++.|++.+...+
T Consensus 60 ~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~ 139 (452)
T PRK11273 60 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWP 139 (452)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccch
Confidence 6899999999999999999999999999999999999999999998888877653 677888999999998887655
Q ss_pred hhh--hcccccc-cccccccchhhhcccCcc-chhh
Q 027462 163 CRY--ISQKWHH-QNTEEHSPLASKYVLPLV-SYPL 194 (223)
Q Consensus 163 ~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~ 194 (223)
... ..+.+.+ +|+++.+....+..+|.. .+|+
T Consensus 140 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l 175 (452)
T PRK11273 140 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLL 175 (452)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 332 4444544 489999998888888764 4554
No 54
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.23 E-value=3.1e-11 Score=110.00 Aligned_cols=118 Identities=18% Similarity=0.092 Sum_probs=101.4
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHhhhhhhhh
Q 027462 84 YCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA--LNIYMLIFGRVLLGVGIGFTN 161 (223)
Q Consensus 84 ~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a--~~~~~l~v~r~l~G~g~g~~~ 161 (223)
+++++..+.+++.+.+.+++.++.++.|++.||+|||+++.++.++..++.+++.++ .++..+++.|+++|++.+...
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~ 149 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS 149 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence 678899999999999999999999999999999999999999999888888776554 457788999999999999888
Q ss_pred hhhh--hcccccc-cccccccchhhhcccCccchhhhhhhccC
Q 027462 162 QCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 162 ~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
+... .++.+++ +|+++.+....+..+|.+++|.+...+..
T Consensus 150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~ 192 (465)
T TIGR00894 150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCE 192 (465)
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7654 6666655 49999999999999999999887665543
No 55
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.23 E-value=7.7e-11 Score=103.10 Aligned_cols=110 Identities=13% Similarity=0.137 Sum_probs=90.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHhhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL-NIYMLIFGRVLLGVGIGFTNQCR 164 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~-~~~~l~v~r~l~G~g~g~~~~~~ 164 (223)
++++.+.+++.+...++..+++++.|++.||+|||+.+.++.++..++.+++++++ ++..+++.|++.|++.+...+..
T Consensus 33 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 112 (366)
T TIGR00886 33 GLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCM 112 (366)
T ss_pred CCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchhhHhHH
Confidence 47999999999999999999999999999999999999999999999999999998 99999999999999866443322
Q ss_pred h-hcccccc-cccccccchhhhcccCccchhhh
Q 027462 165 Y-ISQKWHH-QNTEEHSPLASKYVLPLVSYPLI 195 (223)
Q Consensus 165 ~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 195 (223)
. .++.+++ +|+++.+.......+|..+++.+
T Consensus 113 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i 145 (366)
T TIGR00886 113 PWISFFFPKKIQGTALGLAAGWGNMGGGVAQFV 145 (366)
T ss_pred HHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 2 5555544 48999988886666665555443
No 56
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.22 E-value=4.4e-11 Score=105.94 Aligned_cols=115 Identities=19% Similarity=0.154 Sum_probs=102.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY- 165 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~- 165 (223)
.+..-.|.+.|.+.+.+++.++++|.++||+|||+++++|++..++.+++.+.+.++..+++.|++.|+.-|....+++
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAi 144 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAI 144 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHH
Confidence 3566779999999999999999999999999999999999999999999999999996666669999999999888877
Q ss_pred hccccccc-ccccccchhhhcccCccchhhhhhhccC
Q 027462 166 ISQKWHHQ-NTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 166 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
+++-...+ |...++.++..+++|.+++|.+.+-+..
T Consensus 145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 78877666 9999999999999999999987655443
No 57
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.22 E-value=9e-11 Score=104.28 Aligned_cols=109 Identities=22% Similarity=0.182 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-hccc
Q 027462 91 LLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY-ISQK 169 (223)
Q Consensus 91 ~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~-~~~~ 169 (223)
..+++.+...++..++.++.|++.||+|||+++..+.++..++.++..++++++.+++.|++.|++.+....... ..+.
T Consensus 55 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 134 (408)
T PRK09874 55 WSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQ 134 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHh
Confidence 358889999999999999999999999999999999998888888888889999999999999987654322211 4444
Q ss_pred cc-ccccccccchhhhcccCccchhhhhhhc
Q 027462 170 WH-HQNTEEHSPLASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 170 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
+. ++|+++.+.......+|.+++|.+..-+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 165 (408)
T PRK09874 135 VPRNKSGWALGTLSTGGVSGALLGPLAGGLL 165 (408)
T ss_pred cCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 4588999999888888888888765544
No 58
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.20 E-value=1.5e-10 Score=102.97 Aligned_cols=123 Identities=19% Similarity=0.230 Sum_probs=103.7
Q ss_pred cCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHH
Q 027462 58 TSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIG 137 (223)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~ 137 (223)
..+|.+.++++ .++.+.++..+.+.++..++.++.|++.||+|||+.++++.++..++.++.
T Consensus 24 ~~lp~~~~~~~------------------~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~ 85 (392)
T PRK10473 24 VGLPRIAADLN------------------ASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLC 85 (392)
T ss_pred hhHHHHHHHhC------------------CCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 34588887774 689999999999999999999999999999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccchhhhhhh
Q 027462 138 GAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSI 198 (223)
Q Consensus 138 ~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (223)
..++++..+++.|++.|++.+...+... ..+.+++ +|+++.+.......++.+++|.+..-
T Consensus 86 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~ 149 (392)
T PRK10473 86 SLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHL 149 (392)
T ss_pred HHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999887666443 5556644 48888898888888888777776543
No 59
>PRK11043 putative transporter; Provisional
Probab=99.19 E-value=5.4e-11 Score=106.06 Aligned_cols=113 Identities=16% Similarity=0.143 Sum_probs=92.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh--
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR-- 164 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~-- 164 (223)
.++++.+++.+.+.++..+++++.|++.||+|||+.+..+.++..++.++..++++++.+++.|++.|++.+...+..
T Consensus 38 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~ 117 (401)
T PRK11043 38 TSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQA 117 (401)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999998888899999999999999999877655432
Q ss_pred hhcccccc-cccccccchhhhcccCccchhhhhhhc
Q 027462 165 YISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 165 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
...+.+++ ++.+.++.......++..++|.+..-+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l 153 (401)
T PRK11043 118 LVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWL 153 (401)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14555544 466677777776777777777655433
No 60
>PTZ00207 hypothetical protein; Provisional
Probab=99.19 E-value=3.6e-10 Score=106.55 Aligned_cols=112 Identities=12% Similarity=-0.021 Sum_probs=88.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh------hhHHHHHHHHHHHhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA------LNIYMLIFGRVLLGVGIGFT 160 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a------~~~~~l~v~r~l~G~g~g~~ 160 (223)
++.++.+++.+... ...+..++.|++.||+|+|+++.++.++..++.++++++ .+++.+++.|++.|+|.+..
T Consensus 59 ls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~ 137 (591)
T PTZ00207 59 LTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLF 137 (591)
T ss_pred cCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHH
Confidence 78999999887633 344567788999999999999999999999999999987 57899999999999998766
Q ss_pred hhhhh--hcccccccccccccchhhhcccCccchhhhhhhc
Q 027462 161 NQCRY--ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 161 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
.+... ....+.++|+++.+...+..++|+.+...+..-+
T Consensus 138 ~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l 178 (591)
T PTZ00207 138 DLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAF 178 (591)
T ss_pred HHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55432 4444566789999999999999987544443333
No 61
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.18 E-value=2.1e-10 Score=105.06 Aligned_cols=112 Identities=10% Similarity=0.024 Sum_probs=99.7
Q ss_pred CCChhH-HHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 027462 86 KFDSQL-LAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR 164 (223)
Q Consensus 86 ~~s~~~-~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~ 164 (223)
++++++ .+.+.+.++.++++..++.|++.||+|.|+++.++.+...+..++.+++.++..+.+.|++.|++.|... +.
T Consensus 57 glT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~ 135 (511)
T TIGR00806 57 NFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AY 135 (511)
T ss_pred CCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 489999 9999999999999999999999999999999999999999999999999999999999999999999988 43
Q ss_pred h--hccccccc-ccccccchhhhcccCccchhhhhhh
Q 027462 165 Y--ISQKWHHQ-NTEEHSPLASKYVLPLVSYPLIFSI 198 (223)
Q Consensus 165 ~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (223)
+ +...++++ |+++.++..++..+|.++++.+..-
T Consensus 136 ~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 136 SSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL 172 (511)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 55555554 8999999999999998888776554
No 62
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.18 E-value=8.4e-11 Score=103.17 Aligned_cols=122 Identities=16% Similarity=0.121 Sum_probs=101.2
Q ss_pred CcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHh
Q 027462 59 SMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGG 138 (223)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~ 138 (223)
.+|.+.++++ +++++.+++.+.+.++..++.++.|++.||+|||+++.++.++..++.+.+
T Consensus 22 ~lp~l~~~~~------------------~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~- 82 (355)
T TIGR00896 22 LLPQIRSALG------------------MSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR- 82 (355)
T ss_pred cHHHHHHHhC------------------CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-
Confidence 3478887775 699999999999999999999999999999999999999998888877776
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccccccccccchhhhcccCccchhhhhhhc
Q 027462 139 AALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 139 ~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
.+++...+++.|++.|++.+....... ..+.++++|+++.+.++....+|..+++.+..-+
T Consensus 83 ~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l 145 (355)
T TIGR00896 83 SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPL 145 (355)
T ss_pred HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888889999999999887655432 4455566789999999998888888777654433
No 63
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.15 E-value=2e-11 Score=116.32 Aligned_cols=156 Identities=15% Similarity=0.071 Sum_probs=120.0
Q ss_pred hhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHH
Q 027462 43 GGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKAS 122 (223)
Q Consensus 43 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~ 122 (223)
..+......+..+... +.+.++|. ++.++.+++.+.+.++.+++.++.+++.||+|||+.
T Consensus 41 ~~~~~~~~~g~~~~~l--~~iek~F~------------------lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~ 100 (633)
T TIGR00805 41 AQLQGLLYNGLVNSSL--TTIERRFK------------------LSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIV 100 (633)
T ss_pred HHHHHHHHHHHHHhhc--hhhhhhhC------------------CCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceE
Confidence 3344444445555443 77777774 689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhh---------------------------------------------------hHHHHHHHHH
Q 027462 123 ILVGGTAFLAGSAIGGAAL---------------------------------------------------NIYMLIFGRV 151 (223)
Q Consensus 123 ~~~~~l~~~~~~l~~~~a~---------------------------------------------------~~~~l~v~r~ 151 (223)
+.++.+++.++.+++++++ .+..++++|+
T Consensus 101 i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 180 (633)
T TIGR00805 101 IGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQL 180 (633)
T ss_pred EEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHH
Confidence 9999999999999988764 2456778999
Q ss_pred HHhhhhhhhhhhhh--hccccccc-ccccccchhhhcccCccchhhhhhhccCC--CC-----Ccccccchhhhhhh
Q 027462 152 LLGVGIGFTNQCRY--ISQKWHHQ-NTEEHSPLASKYVLPLVSYPLIFSITAPK--RS-----RGAGAGESPWQWLL 218 (223)
Q Consensus 152 l~G~g~g~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~-----rg~~~~~~~~~~~~ 218 (223)
++|+|.+...+... +++.++++ |+.+.+.+.+...+|..+++++.+-+... ++ .........+||..
T Consensus 181 l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiG 257 (633)
T TIGR00805 181 LRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIG 257 (633)
T ss_pred HHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHH
Confidence 99999998877553 77777664 99999999999999999888876554431 11 12234455778753
No 64
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.14 E-value=7.1e-11 Score=108.67 Aligned_cols=132 Identities=15% Similarity=0.207 Sum_probs=105.5
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHhhhhhh
Q 027462 82 SNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL--NIYMLIFGRVLLGVGIGF 159 (223)
Q Consensus 82 ~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~--~~~~l~v~r~l~G~g~g~ 159 (223)
..+++++.++.+++.++++.|++++.+..|+++||+|.|+++..+.++.++..++..++. +++.+++.|+++|++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 456889999999999999999999999999999999999999999999999999988774 445778999999999999
Q ss_pred hhhhhh-hccccccc--ccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhhc
Q 027462 160 TNQCRY-ISQKWHHQ--NTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLLH 221 (223)
Q Consensus 160 ~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l~ 221 (223)
..++.. +..+|-.+ |+++.+.+.++.-+|.++...+..++... ..+|++.|++|
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s--------~~GW~sifY~~ 201 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES--------SLGWPSIFYVF 201 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc--------CCCCchHHHHH
Confidence 999854 66666442 77777777777767666555444444332 14688877765
No 65
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.14 E-value=2.4e-10 Score=100.63 Aligned_cols=113 Identities=19% Similarity=0.206 Sum_probs=97.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY- 165 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~- 165 (223)
+++++.+++.+.+.++..++.++.|++.||+|||+.+..+.++..++.+.+.+++++..+++.|++.|++.+...+...
T Consensus 23 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 102 (377)
T PRK11102 23 VSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINA 102 (377)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999887666543
Q ss_pred -hcccccc-cccccccchhhhcccCccchhhhhhhc
Q 027462 166 -ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 166 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
..+.+++ +|.++++.......+|..++|.+...+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 138 (377)
T PRK11102 103 LMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWL 138 (377)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544 488888888888888888887755433
No 66
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.13 E-value=2.1e-10 Score=106.68 Aligned_cols=154 Identities=18% Similarity=0.214 Sum_probs=121.9
Q ss_pred CCCchHHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHH
Q 027462 26 NGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLI 105 (223)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~ 105 (223)
+.-+.|......++..+ +.+|+..+.- ...+.++++|+ -+..+.+|+.+.......+
T Consensus 40 dGG~gWvV~~a~fl~~~--~~~g~~~~~G---v~~~~~~~~f~------------------~s~~~~~~i~sl~~~~~~~ 96 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNL--STDGLINSFG---LLFEELMDYFG------------------SSSSQIAWIGSLLLGVYLL 96 (509)
T ss_pred CCCeeeeeeHhHHHHHH--hhhcchheeh---hhHHHHHHHhC------------------CCccHHHHHHHHHHHHHHH
Confidence 44556655555544444 3334333321 33478888885 3677799999999999999
Q ss_pred HHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHhhhhhhhhhhh--hhcccccccccccccchh
Q 027462 106 ASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIF-GRVLLGVGIGFTNQCR--YISQKWHHQNTEEHSPLA 182 (223)
Q Consensus 106 ~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v-~r~l~G~g~g~~~~~~--~~~~~~~~~~~~~~~~~~ 182 (223)
.+|+.+.+.||+|.|.+.+.|.++..++.++..++++++.+++ .-++.|+|.|+.+... .+...|++||+.|.++..
T Consensus 97 ~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~ 176 (509)
T KOG2504|consen 97 AGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAV 176 (509)
T ss_pred hccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999977765 4667788888876643 277788999999999999
Q ss_pred hhcccCccchhhhhhhccCC
Q 027462 183 SKYVLPLVSYPLIFSITAPK 202 (223)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~p~ 202 (223)
++.++|.++.|.+...+...
T Consensus 177 ~GsG~G~~~~~~l~~~l~~~ 196 (509)
T KOG2504|consen 177 SGTGVGTVVFPPLLKYLLSK 196 (509)
T ss_pred ccCCcceeeHHHHHHHHHHH
Confidence 99999999998877777663
No 67
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.13 E-value=3.1e-10 Score=101.76 Aligned_cols=110 Identities=7% Similarity=0.145 Sum_probs=91.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY- 165 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~- 165 (223)
.++.+.+++.+.+.+...+..++.|+++||+|||++++.+.+++.++.+.++++.+. ++.|+++|++.+...++..
T Consensus 35 ~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a 111 (393)
T PRK11195 35 YPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYG 111 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999999999999999999999999999999998888877776553 6789999999999888753
Q ss_pred -hcccccc-cccccccchhhhcccCccchhhhhhhc
Q 027462 166 -ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 166 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
+++..++ +|.++.+..+....+|.+++|.+..-+
T Consensus 112 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l 147 (393)
T PRK11195 112 ILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGAL 147 (393)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666644 488888888888777777777755433
No 68
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.13 E-value=2.7e-10 Score=103.32 Aligned_cols=126 Identities=14% Similarity=0.041 Sum_probs=99.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHhhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA----LNIYMLIFGRVLLGVGIGFTNQ 162 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a----~~~~~l~v~r~l~G~g~g~~~~ 162 (223)
+++++.+++.+.+.++..++.++.|++.||+|||+.+.++.++..++.++.+.. .++..+++.|++.|++.|...+
T Consensus 58 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~ 137 (438)
T TIGR00712 58 FSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWP 137 (438)
T ss_pred CCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchH
Confidence 689999999999999999999999999999999999999998888888776654 4567778899999998887655
Q ss_pred hhh--hccccc-ccccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462 163 CRY--ISQKWH-HQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 163 ~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
... ..+.++ ++|+++++.......+|..++|.+..-.... ..+||+.|.+
T Consensus 138 ~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~--------~~~w~~~f~~ 190 (438)
T TIGR00712 138 PCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW--------FNDWHAALYF 190 (438)
T ss_pred HHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH--------hhhhHHHHHH
Confidence 432 555564 4599999999999998888877654332211 1357776654
No 69
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.09 E-value=8.6e-10 Score=98.85 Aligned_cols=114 Identities=13% Similarity=0.083 Sum_probs=90.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHh---hh-hhHHHHHHHHHHHhhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGG---AA-LNIYMLIFGRVLLGVGIGFTNQ 162 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~---~a-~~~~~l~v~r~l~G~g~g~~~~ 162 (223)
+++++.+++.+.+.++..++.++.|++.||+|||+++..+.++..++.+++. .. .++..+++.|++.|+|.+...+
T Consensus 45 ~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~ 124 (402)
T TIGR00897 45 LSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAY 124 (402)
T ss_pred CCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHh
Confidence 6899999999999999999999999999999999999999999888766542 32 5777888899999998876544
Q ss_pred hhh--hccccc-ccccccccchhhhcccCc-cchhhhhhhcc
Q 027462 163 CRY--ISQKWH-HQNTEEHSPLASKYVLPL-VSYPLIFSITA 200 (223)
Q Consensus 163 ~~~--~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 200 (223)
... ..+.++ ++|+++.+......++|. +++|.+..-..
T Consensus 125 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~ 166 (402)
T TIGR00897 125 SFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI 166 (402)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 322 444554 459999999999999886 46776544433
No 70
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.09 E-value=6e-10 Score=99.97 Aligned_cols=167 Identities=11% Similarity=0.032 Sum_probs=131.0
Q ss_pred CCchHHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHH
Q 027462 27 GKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIA 106 (223)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~ 106 (223)
...+++++.+.+...+++..+-+..-.++ .++|.++++.. +|.++.+.+.+++.+.+.++
T Consensus 21 ~~y~~~r~qif~~~fiGYa~fYl~RknF~--~a~p~l~e~~~------------------lsk~~lG~i~s~f~i~YG~s 80 (448)
T COG2271 21 KTYKRWRIQIFLSIFIGYAAFYLTRKNFN--LAMPALIEDGG------------------LSKTQLGILGSAFSITYGVS 80 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hccHHHHHhcC------------------CCHHHHHHHHHHHHHHHHHH
Confidence 33445555556666666666655555554 45688888873 59999999999999999999
Q ss_pred HHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-hcccc--cccccccccchhh
Q 027462 107 SLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY-ISQKW--HHQNTEEHSPLAS 183 (223)
Q Consensus 107 ~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~-~~~~~--~~~~~~~~~~~~~ 183 (223)
.++.|.++||.+.|+.+.++.++..+.++++++.+++..+.+.-++.|...|...+.++ .=-+| ++.|++..++-+.
T Consensus 81 Kf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~ 160 (448)
T COG2271 81 KFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNT 160 (448)
T ss_pred HHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehh
Confidence 99999999999999999999999999999999999999999999999999888888765 22344 3349999999999
Q ss_pred hcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462 184 KYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 184 ~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
..-+|..+.|.+..- +......+||+.|..
T Consensus 161 shNiGGal~~~~~~l-------a~~~~~~~w~~~f~~ 190 (448)
T COG2271 161 SHNIGGALAPLVALL-------AFFAFHGGWRAAFYF 190 (448)
T ss_pred hhhcccchHHHHHHH-------HHHHhccchhHHHHH
Confidence 999999988876632 222222367776654
No 71
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.05 E-value=1.8e-09 Score=97.04 Aligned_cols=125 Identities=18% Similarity=0.115 Sum_probs=103.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY 165 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~ 165 (223)
++++.+.+.+.+...+...+..++.|++.||+|||+++..+.++..++.+.+.++++++.+++.|++.|++.+...+...
T Consensus 42 g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~ 121 (400)
T PRK11646 42 GWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRT 121 (400)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999998889999999999999998876655432
Q ss_pred --hcccc-cccccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462 166 --ISQKW-HHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 166 --~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
..+.. +++|+++.+.......+|..++|.+..-+.. .+|++.+++
T Consensus 122 ~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~----------~g~~~~f~~ 169 (400)
T PRK11646 122 ALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ----------YDFRLVCAT 169 (400)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHH
Confidence 44444 4468999999988888888888876655542 256666654
No 72
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.05 E-value=7e-10 Score=97.20 Aligned_cols=126 Identities=14% Similarity=0.131 Sum_probs=90.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILV-GGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR 164 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~-~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~ 164 (223)
+.++.+.+++.+.+.+...+..++.|++.||+|||+.+++ +.++..++.+++++++++..+++.|++.|.+.+...+..
T Consensus 29 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~ 108 (375)
T TIGR00899 29 RARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQL 108 (375)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHH
Confidence 4689999999999999999999999999999999887654 555556667778888999888889998887666555543
Q ss_pred h-hccccccc--cccc--ccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462 165 Y-ISQKWHHQ--NTEE--HSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 165 ~-~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
. ....+.++ |.+. .+.......+|.+++|.+..-... ..+||+.+.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~---------~~~~~~~f~~ 160 (375)
T TIGR00899 109 FALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL---------GFGFTVMFLT 160 (375)
T ss_pred HHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH---------hcccHHHHHH
Confidence 2 22223222 3322 466666777888888876554432 1367776654
No 73
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=99.04 E-value=3.5e-10 Score=103.72 Aligned_cols=164 Identities=20% Similarity=0.269 Sum_probs=127.9
Q ss_pred CCCchHHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHH
Q 027462 26 NGKMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLI 105 (223)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~ 105 (223)
..+.+|+..+...+ ..++.+.+.+++. ..+-++.++..+ +-+.+..||+.++..++.++
T Consensus 28 ~~~t~wrsi~l~~~---~sfl~~v~~sI~~--~s~wpYl~~lD~----------------~A~~~ffG~viaa~slg~~i 86 (488)
T KOG2325|consen 28 ERKTNWRSIYLALL---NSFLVAVQFSIYL--TSMWPYLQKLDP----------------TATATFFGLVIAASSLGHAI 86 (488)
T ss_pred ccCCchHhHHHHHH---HHHHHhhhheEEE--eecchhhhhcCC----------------CCCcchhhHHHHHHHHHHHh
Confidence 34556655443332 3345566666664 334566666543 23788899999999999999
Q ss_pred HHHhHHhHHhhhch-hHHHHHHHHHHHHHHHHH-hhh---h-hHHHHHHHHHHHhhhhhhhhhhh-hhccccccc-cccc
Q 027462 106 ASLFASTVTRAFGR-KASILVGGTAFLAGSAIG-GAA---L-NIYMLIFGRVLLGVGIGFTNQCR-YISQKWHHQ-NTEE 177 (223)
Q Consensus 106 ~~~~~g~l~dr~Gr-k~~~~~~~l~~~~~~l~~-~~a---~-~~~~l~v~r~l~G~g~g~~~~~~-~~~~~~~~~-~~~~ 177 (223)
.+++.|.+..|.+. |++++.++++.++++++. +++ + ..+.+.++|++.|+|.|.....+ |++++...+ |.++
T Consensus 87 ~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA 166 (488)
T KOG2325|consen 87 FSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRA 166 (488)
T ss_pred cchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHH
Confidence 99999999999986 888899999999999888 443 3 55778899999999999888877 488888665 9999
Q ss_pred ccchhhhcccCccchhhhhhhccCCCCCccccc
Q 027462 178 HSPLASKYVLPLVSYPLIFSITAPKRSRGAGAG 210 (223)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~ 210 (223)
++..+.+..+|.+++|.+..-+.|-...|.-..
T Consensus 167 ~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~ 199 (488)
T KOG2325|consen 167 FAATSGGFVLGIILGPTIQLAFTPLGEKGFMIL 199 (488)
T ss_pred HHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEc
Confidence 999999999999999999988888766665543
No 74
>PRK10054 putative transporter; Provisional
Probab=99.03 E-value=2.8e-09 Score=95.62 Aligned_cols=115 Identities=14% Similarity=0.106 Sum_probs=93.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY 165 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~ 165 (223)
++++.+.+++.+...++..++.++.|++.||+|||++++++.++..++.++.++.+++..+++.|.+.|.+.+...++..
T Consensus 39 g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 118 (395)
T PRK10054 39 SLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLK 118 (395)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999998888888888889988888888888776665444322
Q ss_pred --hcccccc-cccccccchhhhcccCccchhhhhhhcc
Q 027462 166 --ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITA 200 (223)
Q Consensus 166 --~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
.++..++ +|.++++.......+|.+++|.+..-+.
T Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 119 AWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433 4888888888888888888877665543
No 75
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.01 E-value=1.1e-09 Score=95.79 Aligned_cols=132 Identities=13% Similarity=0.115 Sum_probs=93.8
Q ss_pred ChhHHHHHHHH-----HHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHh
Q 027462 88 DSQLLAAFTSS-----LYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIY--------MLIFGRVLLG 154 (223)
Q Consensus 88 s~~~~~~~~s~-----~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~--------~l~v~r~l~G 154 (223)
++++.+.+.+. ..++..+++++.|++.||+|||++++++.++..++.+++++++++. .+++.|+++|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G 107 (394)
T TIGR00883 28 GDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQG 107 (394)
T ss_pred CChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHH
Confidence 34555544332 3344457889999999999999999999999999999999887764 4788999999
Q ss_pred hhhhhhhhhhh--hcccccc-cccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462 155 VGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 155 ~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
++.+...+... .++.+++ +|+++.+....+..+|.++++....-+... ..+......+||+.+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~-~~~~~~~~~~w~~~~~~ 175 (394)
T TIGR00883 108 FSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYL-LGDDALLEWGWRIPFLV 175 (394)
T ss_pred hhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHhhccchHHHHHH
Confidence 99887766543 5666644 588999999999889988887654332210 01111223468887654
No 76
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=1e-09 Score=97.80 Aligned_cols=113 Identities=14% Similarity=0.165 Sum_probs=94.0
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhh
Q 027462 83 NYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQ 162 (223)
Q Consensus 83 ~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~ 162 (223)
++.+-+++++|++..+..+.+.+..++.|.+.||+|+|..+++|..++....++.++..+++++++.|.++|+|.+....
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t 178 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT 178 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence 44556788999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhh--hcccccc--cccccccchhhhcccCccchhhh
Q 027462 163 CRY--ISQKWHH--QNTEEHSPLASKYVLPLVSYPLI 195 (223)
Q Consensus 163 ~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 195 (223)
+.. +.+++.+ +|+++++..=+.-++|-+++|.+
T Consensus 179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpf 215 (464)
T KOG3764|consen 179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPF 215 (464)
T ss_pred hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCc
Confidence 742 5555533 25666666666666666666553
No 77
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.97 E-value=9.4e-09 Score=95.21 Aligned_cols=126 Identities=12% Similarity=0.056 Sum_probs=101.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhh-hchhHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRA-FGRKASILVGGTAFLAGSAIGGAALNIYM-LIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr-~Grk~~~~~~~l~~~~~~l~~~~a~~~~~-l~v~r~l~G~g~g~~~~~ 163 (223)
+++.++.+++.+.+.....+..+++|+++|| +|||++++++.+++.+++++++++.+... ++++|+++|+|.|...+.
T Consensus 46 g~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~ 125 (489)
T PRK10207 46 GFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKAN 125 (489)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCC
Confidence 4788999999999998888888999999999 99999999999999999999998876444 457899999999887665
Q ss_pred hh--hcccccc---cccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462 164 RY--ISQKWHH---QNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 164 ~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
.. +.+.+++ ||..+++.....+.+|..++|.+..-+.. ..+|+|.|.+
T Consensus 126 ~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~---------~~gw~~~F~i 178 (489)
T PRK10207 126 PASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD---------KFGYSVTYNL 178 (489)
T ss_pred HHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH---------hhChHHHHHH
Confidence 43 5666633 35778999999999999888876544432 2369998876
No 78
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.97 E-value=1.2e-08 Score=93.93 Aligned_cols=126 Identities=11% Similarity=0.163 Sum_probs=103.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhh-hchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRA-FGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR 164 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr-~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~ 164 (223)
+++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++..++.++.+++++...+++.|++.|+|.|...+..
T Consensus 44 g~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~ 123 (475)
T TIGR00924 44 GFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANP 123 (475)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCH
Confidence 5799999999999999999999999999999 899999999999999999999998888888899999999988766654
Q ss_pred h--hccccc----ccccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462 165 Y--ISQKWH----HQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 165 ~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
. ..+.++ +||+++++.......+|.+++|.+..-+... .+|++.|.+
T Consensus 124 ~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~---------~g~~~~f~~ 176 (475)
T TIGR00924 124 SSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN---------YGYHVGFNL 176 (475)
T ss_pred HHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh---------cChHHHHHH
Confidence 3 444442 3588899998888889999898876655431 356666543
No 79
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.89 E-value=7.8e-09 Score=95.77 Aligned_cols=136 Identities=16% Similarity=0.140 Sum_probs=114.4
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhh
Q 027462 83 NYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQ 162 (223)
Q Consensus 83 ~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~ 162 (223)
++.+....+.+++.+.+.++++++.++++.+.||++..+.+....++..+..++....+|++.+++.|++.|+..+...|
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP 153 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWP 153 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccch
Confidence 34456788999999999999999999999999999988888888888888887777899999999999999999999888
Q ss_pred hhh--hccccccc-ccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhhc
Q 027462 163 CRY--ISQKWHHQ-NTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLLH 221 (223)
Q Consensus 163 ~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l~ 221 (223)
+.- .++-|++. |+.-+++..+..++|.+++.++.+-+.. .++. .+..+|||.|.+.
T Consensus 154 ~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~--~~~~-~~~~gW~~~FiI~ 212 (495)
T KOG2533|consen 154 GVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK--LNGS-GGLAGWRWLFIIE 212 (495)
T ss_pred HHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh--hcCC-CCcCCceeehhHH
Confidence 663 67777664 9999999999999999999887777654 2222 2357899999764
No 80
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=98.88 E-value=6e-09 Score=92.77 Aligned_cols=114 Identities=11% Similarity=0.091 Sum_probs=84.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHH-HHHHH-HHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGT-AFLAG-SAIGGAALNIYMLIFGRVLLGVGIGFTNQCR 164 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l-~~~~~-~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~ 164 (223)
++.++.+++.+.+.+...+++++.|++.||+|||........ ...+. .+....+++++.+++.|.+.|.+.+...+..
T Consensus 36 ~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~ 115 (382)
T TIGR00902 36 LGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHNAWLLFIAIGLFALFFSAGMPIG 115 (382)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHccchhHH
Confidence 799999999999999999999999999999998543221111 11111 1234467889999999999888777655543
Q ss_pred h-hcccccccccccccchhhhcccCccchhhhhhhcc
Q 027462 165 Y-ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITA 200 (223)
Q Consensus 165 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
. ....++++|+++++.....-++|.+++|.+..-+.
T Consensus 116 ~al~~~~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~ 152 (382)
T TIGR00902 116 DALANTWQKQFGLDYGKVRLIGSAAFIIGSALFGGLI 152 (382)
T ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 2 44566777899999999988899999887655443
No 81
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.87 E-value=1.7e-08 Score=101.21 Aligned_cols=113 Identities=13% Similarity=0.091 Sum_probs=91.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHhhhhhhhhhhh
Q 027462 88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGG---AALNIYMLIFGRVLLGVGIGFTNQCR 164 (223)
Q Consensus 88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~---~a~~~~~l~v~r~l~G~g~g~~~~~~ 164 (223)
+....+++.+.+.++..++++++|+++||+|||++++++.++..+..++.. .+.++..+++.|++.|++.+...++.
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 124 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK 124 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence 455679999999999999999999999999999999988877666555443 34678999999999999999887765
Q ss_pred h--hcccccc-cccccccchhhhcccCccchhhhhhhcc
Q 027462 165 Y--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITA 200 (223)
Q Consensus 165 ~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
. +++.+.+ +|+++++.......+|.+++|.+..-+.
T Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~ 163 (1146)
T PRK08633 125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLF 163 (1146)
T ss_pred HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4 6666654 4999999999999988888887655443
No 82
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.84 E-value=2.6e-09 Score=95.97 Aligned_cols=113 Identities=9% Similarity=-0.072 Sum_probs=88.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA-----ALNIYMLIFGRVLLGVGIGFTN 161 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~-----a~~~~~l~v~r~l~G~g~g~~~ 161 (223)
.++.+.+++.+...++..++.++.|++.||+|||+++.++.++..++.+..+. .+++..+++.|++.|++.+...
T Consensus 49 ~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 128 (417)
T PRK10489 49 GSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGV 128 (417)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999999999999999998887777766554432 4677888899999999877665
Q ss_pred hhhh--hccccc-ccccccccchhhhcccCccchhhhhhhc
Q 027462 162 QCRY--ISQKWH-HQNTEEHSPLASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 162 ~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
++.. ..+..+ ++|.++.+.......+|.+++|.+..-+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l 169 (417)
T PRK10489 129 TALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLL 169 (417)
T ss_pred HHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Confidence 5433 334443 3478888888888888888888765443
No 83
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.84 E-value=3.4e-08 Score=91.62 Aligned_cols=126 Identities=13% Similarity=0.086 Sum_probs=95.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhh-hchhHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRA-FGRKASILVGGTAFLAGSAIGGAAL-NIYMLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr-~Grk~~~~~~~l~~~~~~l~~~~a~-~~~~l~v~r~l~G~g~g~~~~~ 163 (223)
++++++.+++.+.+.......++++|++.|| +|||+.++++.++..++.++++++. +...+.++|++.|+|.|...+.
T Consensus 53 g~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~ 132 (500)
T PRK09584 53 GMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKAN 132 (500)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCC
Confidence 4688888888887776666667899999999 5999999999999999988888874 4556778899999998876554
Q ss_pred hh--hcccccc---cccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462 164 RY--ISQKWHH---QNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 164 ~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
.. ..+.+++ ||..+++.+.....+|..++|.+..-+.. ..+|++.|.+
T Consensus 133 ~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~---------~~g~~~~F~i 185 (500)
T PRK09584 133 PSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAA---------KYGWSVAFAL 185 (500)
T ss_pred HHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHH---------hhCHHHHHHH
Confidence 32 4555532 35568888888888888888886655533 2358877765
No 84
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.84 E-value=1.4e-08 Score=90.86 Aligned_cols=141 Identities=16% Similarity=0.126 Sum_probs=118.6
Q ss_pred HhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchh
Q 027462 41 ATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRK 120 (223)
Q Consensus 41 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk 120 (223)
....+++|+.....++++ |.+++.|+ ++..+.+.+..+++.++.+.++..+++.+|+|+|
T Consensus 19 t~lFfl~G~~~~l~diLi--p~l~~~f~------------------ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk 78 (422)
T COG0738 19 TSLFFLWGFITCLNDILI--PHLKEVFD------------------LTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYK 78 (422)
T ss_pred HHHHHHHHHHhhcchhhH--HHHHHHhC------------------ccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhH
Confidence 334466677777777665 88888885 7999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHhhhhhhhhhhhh--hccccccc-ccccccchhhhcccCccchhh
Q 027462 121 ASILVGGTAFLAGSAIGG---AALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHHQ-NTEEHSPLASKYVLPLVSYPL 194 (223)
Q Consensus 121 ~~~~~~~l~~~~~~l~~~---~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 194 (223)
+.++++..+++++..+.. ...++..++++-++.|.|.+....+.+ .....+++ .++=.+..++-+++|++++|.
T Consensus 79 ~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~ 158 (422)
T COG0738 79 AGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPL 158 (422)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHH
Confidence 999999999999988774 346788888999999999999888765 55555554 788899999999999999999
Q ss_pred hhhhccC
Q 027462 195 IFSITAP 201 (223)
Q Consensus 195 ~~~~~~p 201 (223)
+.+.+.-
T Consensus 159 ~g~~lil 165 (422)
T COG0738 159 LGSSLIL 165 (422)
T ss_pred HHHHHHH
Confidence 8776554
No 85
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=98.79 E-value=1.9e-08 Score=89.52 Aligned_cols=113 Identities=8% Similarity=0.041 Sum_probs=84.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchh----HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRK----ASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQ 162 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk----~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~ 162 (223)
.+..+++++.+.+.++..+++++.|++.||+||| +.+.+...+ ........+++++.+++.|++.|++.+...+
T Consensus 36 ~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~ 113 (382)
T PRK11128 36 YTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL--FAVAFWFGAHSFWLLFVAIGLFNLFFSPLVP 113 (382)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH--HHHHHHHhcccHHHHHHHHHHHHHHHccccc
Confidence 6999999999999999999999999999999984 333222221 1222333457788888999999988776666
Q ss_pred hhh-hcccccccccccccchhhhcccCccchhhhhhhccC
Q 027462 163 CRY-ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 163 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
... ...+|.++|+++++.......+|..++|.+...+..
T Consensus 114 ~~~a~~~~~~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~ 153 (382)
T PRK11128 114 LTDALANTWQKQIGLDYGKVRLWGSIAFVIGSALTGKLVS 153 (382)
T ss_pred HHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 432 445677778899998888888888888887665543
No 86
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.79 E-value=7.2e-09 Score=77.28 Aligned_cols=105 Identities=25% Similarity=0.301 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-
Q 027462 96 TSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH- 172 (223)
Q Consensus 96 ~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~- 172 (223)
.+.+.++..++.++.+++.||+|||+.+..+..+..++.+.....++...+.+.+++.|++.+...+... ..+..++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 3456678899999999999999999999999988888888888888888888999999998887766543 4455544
Q ss_pred cccccccchhhhcccCccchhhhhhhcc
Q 027462 173 QNTEEHSPLASKYVLPLVSYPLIFSITA 200 (223)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
+|++..+.......+|..++|.+..-..
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLA 111 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence 4788888888888888877776555443
No 87
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.75 E-value=6.9e-08 Score=83.84 Aligned_cols=114 Identities=14% Similarity=-0.018 Sum_probs=85.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHhhhhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNI--YMLIFGRVLLGVGIGFTNQCR 164 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~--~~l~v~r~l~G~g~g~~~~~~ 164 (223)
.++.+.+++.+...++..++.++.|++.||+|||+.+.++.++..++.++..+.++. ..+++..++.|++.+...+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 316 (377)
T TIGR00890 237 LSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLF 316 (377)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhcc
Confidence 577888999999999999999999999999999999998888888877766655432 233455667777776655432
Q ss_pred h--hcccccc-cccccccchhhhcccCccchhhhhhhcc
Q 027462 165 Y--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITA 200 (223)
Q Consensus 165 ~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
. ..+.+++ +|+++++.......+|..++|.+...+.
T Consensus 317 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 355 (377)
T TIGR00890 317 PSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHAL 355 (377)
T ss_pred HHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 4455544 4888888888888888888887665554
No 88
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.73 E-value=2.2e-08 Score=89.85 Aligned_cols=102 Identities=16% Similarity=0.057 Sum_probs=87.8
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHhhhhhh
Q 027462 83 NYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIY---MLIFGRVLLGVGIGF 159 (223)
Q Consensus 83 ~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~---~l~v~r~l~G~g~g~ 159 (223)
+++++|+.|.+++.+...+...+..++.|.+.||||.|++..++.++..+-.+..+++.+.+ ++++.+++.|++.+.
T Consensus 42 ~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Gas 121 (417)
T COG2223 42 SDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGAS 121 (417)
T ss_pred cccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccce
Confidence 34468999999999999999999999999999999999999999999999999888885544 999999999987776
Q ss_pred hhhhhhhcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccchh
Q 027462 160 TNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESP 213 (223)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~ 213 (223)
... +-...++++||+.+|.++|+.+
T Consensus 122 Fav-----------------------------~m~~~s~~fP~~~qG~AlGI~g 146 (417)
T COG2223 122 FAV-----------------------------GMPNASFFFPKEKQGLALGIAG 146 (417)
T ss_pred ehc-----------------------------ccccccccCChhhhhHHHHHhc
Confidence 544 4557888888888888888755
No 89
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.73 E-value=1.7e-07 Score=86.46 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=56.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHH-H--hhhhhHHHHHHHHHHHhhhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAI-G--GAALNIYMLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~-~--~~a~~~~~l~v~r~l~G~g~g~~~~~ 163 (223)
++..+..+..+...++..++.++.|++.||+|||+.+.++.++..+..+. . ..+++...+++++++.|++.+.....
T Consensus 283 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 362 (490)
T PRK10642 283 YSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGV 362 (490)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777788888999999999999999999999988877654433322 1 12345667778888888766655444
No 90
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.70 E-value=3e-07 Score=82.02 Aligned_cols=114 Identities=12% Similarity=-0.030 Sum_probs=78.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHH---hhhh-----hHHHHHHHHHHHhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIG---GAAL-----NIYMLIFGRVLLGVGI 157 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~---~~a~-----~~~~l~v~r~l~G~g~ 157 (223)
++++.+.+++.+...++..++.++.|++.||+|||+.++.+.....++.... .+.+ ....+++.+++.|++.
T Consensus 34 g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 113 (396)
T TIGR00882 34 GLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVF 113 (396)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999988776665443322 1111 2223456677778777
Q ss_pred hhhhhhhh--hcccccccccccccchhhhcccCccchhhhhhhcc
Q 027462 158 GFTNQCRY--ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITA 200 (223)
Q Consensus 158 g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
+...+... ..+ -.+++.+.++.....-.+|..++|.+...+.
T Consensus 114 ~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~ 157 (396)
T TIGR00882 114 SAGAGAIEAYIEK-VSRNSNFEYGKARMFGCVGWALCASIAGILF 157 (396)
T ss_pred ccchhhHHHHHHH-hhhhcccccchhhhhcccHHHHHHHHHhhhh
Confidence 66555432 111 1223445667766666788888887765544
No 91
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.69 E-value=3.1e-07 Score=80.21 Aligned_cols=111 Identities=9% Similarity=-0.036 Sum_probs=70.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHH--HHHhhh--hhHHHHHHHHHHHhhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGS--AIGGAA--LNIYMLIFGRVLLGVGIGFTNQ 162 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~--l~~~~a--~~~~~l~v~r~l~G~g~g~~~~ 162 (223)
.++.+.+.+.....++..++.++.|++.||+|||+.+.....+..+.. +...+. .+...+++..++.|++.+...+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 331 (394)
T TIGR00883 252 LSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTG 331 (394)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh
Confidence 578888888999999999999999999999999998775555444333 222222 3455556667777877766666
Q ss_pred hhh--hccccccc-ccccccch-hhhcccCccchhhhhh
Q 027462 163 CRY--ISQKWHHQ-NTEEHSPL-ASKYVLPLVSYPLIFS 197 (223)
Q Consensus 163 ~~~--~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~ 197 (223)
... ..+..+++ |.++++.. .....+|..++|.+..
T Consensus 332 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g 370 (394)
T TIGR00883 332 PMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAA 370 (394)
T ss_pred hHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHH
Confidence 522 34444433 55555552 3333455555554443
No 92
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.66 E-value=4.5e-08 Score=98.61 Aligned_cols=111 Identities=10% Similarity=0.112 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHH--HHHHH-HHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462 90 QLLAAFTSSLYISGLIASLFASTVTRAFGRKASILV--GGTAF-LAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY- 165 (223)
Q Consensus 90 ~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~--~~l~~-~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~- 165 (223)
...++..+.+.+...+.+++.|+++||+|||+++.. ...+. ....+.....++++++++.|+++|++.+...++..
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 557888889999999999999999999999997633 22222 22222233347899999999999999998877654
Q ss_pred -hccccccc-ccccccchhhhcccCccchhhhhhhcc
Q 027462 166 -ISQKWHHQ-NTEEHSPLASKYVLPLVSYPLIFSITA 200 (223)
Q Consensus 166 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
+++.++++ +.++.+.......+|.+++|.+..-+.
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~ 168 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLAT 168 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777664 999999999999999999998766554
No 93
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.64 E-value=4.9e-07 Score=83.90 Aligned_cols=126 Identities=13% Similarity=0.216 Sum_probs=90.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhh-chhHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAF-GRKASILVGGTAFLAGSAIGGAAL-NIYMLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~-Grk~~~~~~~l~~~~~~l~~~~a~-~~~~l~v~r~l~G~g~g~~~~~ 163 (223)
++++.+.+.+.+.+.....++++++|+++||+ |||++++++.++..++.++.+... +...+.++..+.++|.|...+.
T Consensus 41 gls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~ 120 (493)
T PRK15462 41 KYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSN 120 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhccccccc
Confidence 47899999999999999999999999999999 999999999999998887666543 2222333333444455544342
Q ss_pred h--hhcccccc---cccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462 164 R--YISQKWHH---QNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 164 ~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
. ..++.+++ ||..+++.....-.+|+.++|.+..-+.. ..+|++.|++
T Consensus 121 ~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~---------~~Gw~~~F~i 173 (493)
T PRK15462 121 VSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE---------EYSWAMGFGL 173 (493)
T ss_pred HHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh---------hhChHHHHHH
Confidence 2 26666643 58888888877777888888886655433 2357776654
No 94
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.64 E-value=1e-06 Score=78.76 Aligned_cols=116 Identities=14% Similarity=0.046 Sum_probs=83.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh-
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR- 164 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~- 164 (223)
++++.+.+++.+...+..+++.++.|++.||+|||+.+..+.....+........++...+++.+++.+++.|......
T Consensus 248 ~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~ 327 (393)
T PRK15011 248 HLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGM 327 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888887778888899999999999999998877666555444444455666667778887777666544332
Q ss_pred -hhcccccccccccccchhhhcccCccchhhhhhhccC
Q 027462 165 -YISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 165 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
+..+..+++|.++.+..+....+|..++|.+...+.+
T Consensus 328 ~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~ 365 (393)
T PRK15011 328 LYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAE 365 (393)
T ss_pred HHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2444556667888888888778888888876655443
No 95
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.63 E-value=4.7e-07 Score=77.56 Aligned_cols=116 Identities=17% Similarity=0.225 Sum_probs=96.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKA-SILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR 164 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~-~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~ 164 (223)
+.++.+.+++.+...++..++.++.+++.||+|||+ .+..+..+..++.+.....++...+++..++.|++.+...+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 286 (352)
T cd06174 207 GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhH
Confidence 368899999999999999999999999999999999 9999999999988888888888888889999999988877764
Q ss_pred h--hccccc-ccccccccchhhhcccCccchhhhhhhccC
Q 027462 165 Y--ISQKWH-HQNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 165 ~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
. ..+..+ ++|++.++.......+|..++|.+.....+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~ 326 (352)
T cd06174 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD 326 (352)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 444454 348888888888888888877777666554
No 96
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.62 E-value=4.4e-07 Score=81.11 Aligned_cols=113 Identities=18% Similarity=0.196 Sum_probs=72.2
Q ss_pred CCChhHHHHHHHHH-HHHHHHHHHhHHhHHhhhchhHHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHH-HHhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSL-YISGLIASLFASTVTRAFGRKASIL-VGGTAFLAGSAIGGAALNIYMLIFGRV-LLGVGIGFTNQ 162 (223)
Q Consensus 86 ~~s~~~~~~~~s~~-~lg~~~~~~~~g~l~dr~Grk~~~~-~~~l~~~~~~l~~~~a~~~~~l~v~r~-l~G~g~g~~~~ 162 (223)
++++++.+++.+.. ..+..++++..++ .||+|||+.++ .+.++..++..+.++++++..+++.+. +.|.+. ...+
T Consensus 47 ~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~ 124 (393)
T PRK15011 47 HARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGS-TANP 124 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-hhHH
Confidence 36899999987665 4566777766677 99999998754 555555566667778888887765544 444433 3333
Q ss_pred hhh-hcccccccccccc----cchhhhcccCccchhhhhhhcc
Q 027462 163 CRY-ISQKWHHQNTEEH----SPLASKYVLPLVSYPLIFSITA 200 (223)
Q Consensus 163 ~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
... ...++.+||.++. +..++.-++|.+++|.+...+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~ 167 (393)
T PRK15011 125 QMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALA 167 (393)
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 322 3344544444433 4556666788888887665443
No 97
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.62 E-value=4.4e-07 Score=80.84 Aligned_cols=115 Identities=13% Similarity=0.078 Sum_probs=87.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY- 165 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~- 165 (223)
+++.+.+.+.+...++..++.++.|++.||+|||+.+..+.+...++.+.....++...+.+..++.|++.+...+...
T Consensus 252 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 331 (406)
T PRK11551 252 LSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYA 331 (406)
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 6788889999999999999999999999999999998887666666655555666666666666777776655544432
Q ss_pred -hcccccc-cccccccchhhhcccCccchhhhhhhccC
Q 027462 166 -ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 166 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
.++...+ .|++..+.......+|..++|.+..-+..
T Consensus 332 ~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~ 369 (406)
T PRK11551 332 LAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA 369 (406)
T ss_pred HHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence 4455544 38888999988888888888887766654
No 98
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.60 E-value=1.4e-07 Score=91.37 Aligned_cols=109 Identities=10% Similarity=-0.082 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcc
Q 027462 91 LLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQ 168 (223)
Q Consensus 91 ~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~ 168 (223)
...+...+..++.+++.++.|++.||+|||++++++.++..++.++.++.++...+++.+++.|++.+...+..+ .++
T Consensus 596 ~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aE 675 (742)
T TIGR01299 596 MIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVE 675 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777799999999999999999999999999999999888888887777777778888776666555533 556
Q ss_pred ccccc-ccccccchhhhcccCccchhhhhhhc
Q 027462 169 KWHHQ-NTEEHSPLASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 169 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
.++.+ |++++++..+...+|.+++|.+...+
T Consensus 676 l~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L 707 (742)
T TIGR01299 676 LYPSDKRATAFGFLNALCKAAAVLGILIFGSF 707 (742)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554 88888888888888888888765544
No 99
>PRK03699 putative transporter; Provisional
Probab=98.59 E-value=4.2e-07 Score=81.17 Aligned_cols=115 Identities=10% Similarity=-0.041 Sum_probs=85.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY 165 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~ 165 (223)
+++..+.+++.+.+.++..++.++.+++.||++||+.+.....+..+..++....++..++.+..++.|++.+...+...
T Consensus 237 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 316 (394)
T PRK03699 237 GMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTII 316 (394)
T ss_pred CCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 36888999999999999999999999999999999998887777666655555666666666677778877766555432
Q ss_pred --hcccccccccccccchhhhcccCccchhhhhhhcc
Q 027462 166 --ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITA 200 (223)
Q Consensus 166 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
..+..++++.+..+.......+|.+++|.+..-+.
T Consensus 317 ~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~ 353 (394)
T PRK03699 317 TLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIV 353 (394)
T ss_pred HHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33334444556667777777788888887765443
No 100
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.58 E-value=6.7e-07 Score=78.76 Aligned_cols=115 Identities=11% Similarity=-0.014 Sum_probs=74.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGS-AIGGAALNIYMLIFGRVLLGVGIGFTNQCR 164 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~-l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~ 164 (223)
+++..+.+++.+...++..++.++.+++.||+|||+.+.++.++..+.. .......+...+.+..++.|++.+...+..
T Consensus 270 g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (405)
T TIGR00891 270 GLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGIL 349 (405)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhH
Confidence 3688999999999999999999999999999999999888776553322 223333444455555555555544444431
Q ss_pred --hhcccccc-cccccccchhhhcccCccchhhhhhhcc
Q 027462 165 --YISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITA 200 (223)
Q Consensus 165 --~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
...+..++ +|+++++.......+|..++|.+..-+.
T Consensus 350 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~ 388 (405)
T TIGR00891 350 PKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLA 388 (405)
T ss_pred HHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 13334433 3666666666666666666666544443
No 101
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.58 E-value=9.6e-07 Score=77.35 Aligned_cols=98 Identities=12% Similarity=0.075 Sum_probs=80.0
Q ss_pred CChhHHHHHHHHHH-HHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh-----------hhHHHHHHHHHHHh
Q 027462 87 FDSQLLAAFTSSLY-ISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA-----------LNIYMLIFGRVLLG 154 (223)
Q Consensus 87 ~s~~~~~~~~s~~~-lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a-----------~~~~~l~v~r~l~G 154 (223)
+++++.+.+..... ++..++.+++|++.||+|||+.+..+.++..+...+..+. ++...+++..++.+
T Consensus 241 ~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (356)
T TIGR00901 241 FSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEA 320 (356)
T ss_pred CCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHH
Confidence 68888888777655 6788999999999999999999888888777665544432 33456677788889
Q ss_pred hhhhhhhhhhhhcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccch
Q 027462 155 VGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGES 212 (223)
Q Consensus 155 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~ 212 (223)
++.+...+. ...+..|..|++.||+..++.
T Consensus 321 ~~~~~~~~~----------------------------~~~~~~~~~p~~~~g~~~g~~ 350 (356)
T TIGR00901 321 VTGGLGTVA----------------------------FVAFLSKLSNPKFGATQMALL 350 (356)
T ss_pred HHhHHHHHH----------------------------HHHHHHHhcCCCccHHHHHHH
Confidence 999998898 899999999999999998864
No 102
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.57 E-value=2.4e-07 Score=85.72 Aligned_cols=124 Identities=15% Similarity=0.099 Sum_probs=85.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhh-----chhHH-HHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAF-----GRKAS-ILVGGTAFLAGSAIGGAA---LNIYMLIFGRVLLGVGI 157 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~-----Grk~~-~~~~~l~~~~~~l~~~~a---~~~~~l~v~r~l~G~g~ 157 (223)
.+..+.+.+ +...... +..++.|++.||+ |||+. ++++.++..++....++. .++..+.+.+++.+++.
T Consensus 44 ~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~ 121 (491)
T PRK11010 44 IDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCS 121 (491)
T ss_pred CCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 577788876 3333333 6889999999999 99885 556666666666656554 46778888899999887
Q ss_pred hhhhhhhh--hccccc-ccccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462 158 GFTNQCRY--ISQKWH-HQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 158 g~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
+...+... ..+.++ ++|+++.+....++.+|.++++....-+... ..+||+.|.+
T Consensus 122 a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~--------~~GWr~~f~i 179 (491)
T PRK11010 122 ASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR--------YLGWQGMYWL 179 (491)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccCHHHHHHH
Confidence 76555432 444444 4588888989998888888887655544431 1368877754
No 103
>TIGR00895 2A0115 benzoate transport.
Probab=98.55 E-value=1.1e-06 Score=76.92 Aligned_cols=97 Identities=15% Similarity=0.198 Sum_probs=69.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYI 166 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~~ 166 (223)
.+..+.+++.+...++..++.++.+++.||+|||+.+....+...+..++.....+...+.+..++.|++.+...+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--- 358 (398)
T TIGR00895 282 FSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSG--- 358 (398)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH---
Confidence 57888899999999999999999999999999995544333333333333222455566677788889888887777
Q ss_pred cccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccc
Q 027462 167 SQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGE 211 (223)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~ 211 (223)
...+..|..|++.|+.+.++
T Consensus 359 -------------------------~~~~~~~~~~~~~~g~~~g~ 378 (398)
T TIGR00895 359 -------------------------LYALMALFYPTAIRATGVGW 378 (398)
T ss_pred -------------------------HHHHHhhcCCHHHHHHHHHH
Confidence 55566666666666666554
No 104
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=98.54 E-value=1.7e-06 Score=75.68 Aligned_cols=114 Identities=13% Similarity=0.072 Sum_probs=83.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY- 165 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~- 165 (223)
.++.+.+++.+.......++.++.|++.||+|||+.+.++.++..+..+.....++.+.+++.+++.|++.+...+...
T Consensus 232 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 311 (375)
T TIGR00899 232 LPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGML 311 (375)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888777777788889999999999999998887776665555555566777777788888888777655432
Q ss_pred -hcccccccccccccchhhhcccCccchhhhhhhcc
Q 027462 166 -ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITA 200 (223)
Q Consensus 166 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
..+..++++.++++.+.....+|..++|.+..-+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~ 347 (375)
T TIGR00899 312 YFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILA 347 (375)
T ss_pred HHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555567888888777778777777655443
No 105
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.51 E-value=2.9e-07 Score=81.93 Aligned_cols=77 Identities=19% Similarity=0.172 Sum_probs=72.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~ 163 (223)
+.+..+...++...++|..+++..+|.++|++|||+.+.+..+...+...+.+.++++.++++.|.+.|+|.|+ .+.
T Consensus 109 ~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv 185 (528)
T KOG0253|consen 109 GPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPV 185 (528)
T ss_pred chhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999998 554
No 106
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.50 E-value=1.8e-06 Score=74.68 Aligned_cols=98 Identities=16% Similarity=0.125 Sum_probs=78.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHhhhhhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALN-IYMLIFGRVLLGVGIGFTNQCRY 165 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~-~~~l~v~r~l~G~g~g~~~~~~~ 165 (223)
.++.+.+++.+...++..++.++.+++.||++||+.+..+.++..++.+...+.++ .+.+++..++.|++.+...+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-- 321 (365)
T TIGR00900 244 RGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVP-- 321 (365)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHH--
Confidence 58889999999999999999999999999999999988887777777666666664 777788889999999888777
Q ss_pred hcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccch
Q 027462 166 ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGES 212 (223)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~ 212 (223)
...+..|..|++.|+++.++.
T Consensus 322 --------------------------~~~~~~~~~~~~~~g~~~~~~ 342 (365)
T TIGR00900 322 --------------------------QGTLLQRRVPAELLGRVFGAQ 342 (365)
T ss_pred --------------------------HHHHHHHhCCHHHHHHHHHHH
Confidence 555666666666666666543
No 107
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.49 E-value=8.8e-07 Score=77.60 Aligned_cols=131 Identities=9% Similarity=0.020 Sum_probs=84.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhh-----chhHHH-HHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAF-----GRKASI-LVGGTAFLAGSAIGGAA---LNIYMLIFGRVLLGVGI 157 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~-----Grk~~~-~~~~l~~~~~~l~~~~a---~~~~~l~v~r~l~G~g~ 157 (223)
++.++.+++.+. .+...+ .++.|++.||+ |||+.+ +.+.++..+..+..++. .++..+....++.+++.
T Consensus 20 ~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~ 97 (356)
T TIGR00901 20 VSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFS 97 (356)
T ss_pred CCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHH
Confidence 799999998655 444444 89999999998 898874 55666666665555565 34444555556666655
Q ss_pred hhhhhhhh--hcccc-cccccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462 158 GFTNQCRY--ISQKW-HHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 158 g~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
+...+... ..+.. +++|+++.+....++.+|.++++.+..-+.+... +....-..||+.|.+
T Consensus 98 ~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g-~~~~~~~~wr~~f~i 162 (356)
T TIGR00901 98 ATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEF-ANTGLITLWGYIFFW 162 (356)
T ss_pred HHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cccccccccHHHHHH
Confidence 54444322 55555 4459999999999999999988877654443210 000112248887764
No 108
>PRK12382 putative transporter; Provisional
Probab=98.45 E-value=1.2e-06 Score=77.75 Aligned_cols=110 Identities=10% Similarity=0.001 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hccc
Q 027462 92 LAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQK 169 (223)
Q Consensus 92 ~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~ 169 (223)
.++..+...++..++.++.|++.||+|+|+.+..+..+..++.++..+.++...+.+..++.|++.+...+... ..+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45556667788889999999999999999999988888888877777777777777888999998887666532 4445
Q ss_pred cc-ccccccccchhhhcccCccchhhhhhhccC
Q 027462 170 WH-HQNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 170 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
+. ++|+++++.......+|..++|.+...+.+
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~ 363 (392)
T PRK12382 331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT 363 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 458889999988888888888876665543
No 109
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=98.44 E-value=1.9e-06 Score=76.74 Aligned_cols=114 Identities=10% Similarity=0.072 Sum_probs=95.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY- 165 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~- 165 (223)
.++.+.+.+.+...++..+..++.+++.||+|+|+.+.++.++..+..+..+++++.+.+++.+.+.|+..+...+...
T Consensus 237 ~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~ 316 (382)
T TIGR00902 237 ISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMR 316 (382)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999988888899999999999999999888777643
Q ss_pred -hcccccc-cccccccchh-hhcccCccchhhhhhhccC
Q 027462 166 -ISQKWHH-QNTEEHSPLA-SKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 166 -~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p 201 (223)
+++. ++ +++.+++.++ ..+++|.+++|.+...+.+
T Consensus 317 ~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~ 354 (382)
T TIGR00902 317 YIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP 354 (382)
T ss_pred HHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555 44 3778888886 4567888877776655544
No 110
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.44 E-value=2.3e-06 Score=76.09 Aligned_cols=109 Identities=13% Similarity=0.037 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcc
Q 027462 91 LLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQ 168 (223)
Q Consensus 91 ~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~ 168 (223)
+.++..+.+.++..++.++.|++.||+|+|+.+..+..+..++.++..+.++...+++..++.|++.+...+... ..+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 345566777888899999999999999999999888888888777777777777778888999999887665432 333
Q ss_pred ccc-ccccccccchhhhcccCccchhhhhhhc
Q 027462 169 KWH-HQNTEEHSPLASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 169 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
..+ ++|+++++.+.....+|..++|.+....
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 361 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLV 361 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 3488888888887777766666544433
No 111
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.42 E-value=2.7e-06 Score=76.55 Aligned_cols=114 Identities=14% Similarity=-0.009 Sum_probs=68.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh---hhh-----HHHHHHHHHHHhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA---ALN-----IYMLIFGRVLLGVGI 157 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~---a~~-----~~~l~v~r~l~G~g~ 157 (223)
++++.+.+++.+...++..+++++.|++.||+|||++++++..+..++...... .+. +...++++++.|.+.
T Consensus 42 g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (420)
T PRK09528 42 GLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGF 121 (420)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 479999999999999999999999999999999999998876665544322111 111 111122233333222
Q ss_pred hhhhhhhh-hcccccccccccccchhhhcccCccchhhhhhhc
Q 027462 158 GFTNQCRY-ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 158 g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
....+... ..++..+++++.++.......+|..++|.+..-+
T Consensus 122 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l 164 (420)
T PRK09528 122 LAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGIL 164 (420)
T ss_pred ccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHH
Confidence 22222211 1122233355666666666667777666654433
No 112
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.41 E-value=1.8e-06 Score=77.36 Aligned_cols=124 Identities=15% Similarity=0.095 Sum_probs=86.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhh-----chhH-HHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAF-----GRKA-SILVGGTAFLAGSAIGGAA---LNIYMLIFGRVLLGVGI 157 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~-----Grk~-~~~~~~l~~~~~~l~~~~a---~~~~~l~v~r~l~G~g~ 157 (223)
++.++++++...... .+..++.|++.||+ |||+ .++++.++..++....++. .+++.+++..++.++..
T Consensus 31 ~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~ 108 (402)
T PRK11902 31 LDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLS 108 (402)
T ss_pred CCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 799999999777776 68899999999999 8875 6777777776666666665 34566666666666665
Q ss_pred hhhhhhhh--hccccccc-ccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462 158 GFTNQCRY--ISQKWHHQ-NTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 158 g~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
+...++.. ..+..+++ |+++.+....++.+|.++++.+..-+.+. ..+||+.|.+
T Consensus 109 ~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~--------~~gw~~~f~i 166 (402)
T PRK11902 109 ASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR--------VLGWGNTYLL 166 (402)
T ss_pred HHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc--------ccCHHHHHHH
Confidence 55444422 44445444 88888888888888888777655444321 1267776654
No 113
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.40 E-value=2.8e-06 Score=73.75 Aligned_cols=114 Identities=14% Similarity=0.065 Sum_probs=71.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhH--HHHH------HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKA--SILV------GGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIG 158 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~--~~~~------~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g 158 (223)
.++.+.+++.+...++..++.++.|++.||+|||+ .... +.++..+........++....+....+.+++.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (399)
T TIGR00893 248 LSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG 327 (399)
T ss_pred ccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh
Confidence 57888899999999999999999999999999985 1111 111111111111112233333333344444443
Q ss_pred hhhhhhh--hccccccc-ccccccchhhhcccCccchhhhhhhccC
Q 027462 159 FTNQCRY--ISQKWHHQ-NTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 159 ~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
..+... ..+..+++ |+++++.......+|..++|.+..-+..
T Consensus 328 -~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~ 372 (399)
T TIGR00893 328 -AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAA 372 (399)
T ss_pred -hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhcc
Confidence 333322 55555554 8889999988888888888887666554
No 114
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.38 E-value=2.6e-06 Score=77.98 Aligned_cols=135 Identities=12% Similarity=-0.017 Sum_probs=86.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAI--GGAALNIYMLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~--~~~a~~~~~l~v~r~l~G~g~g~~~~~ 163 (223)
+++..+.++..+...++..++.++.|++.||+|||+.+.....+..++..+ ....++...+.+.+++.|++.......
T Consensus 290 g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 369 (467)
T PRK09556 290 GFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLL 369 (467)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHH
Confidence 468889999999999999999999999999999988776654444333222 222345555666777777543222221
Q ss_pred --hhhccccccc-ccccccchhhhccc-CccchhhhhhhccCCCCCcc---cccchhhhhhhhh
Q 027462 164 --RYISQKWHHQ-NTEEHSPLASKYVL-PLVSYPLIFSITAPKRSRGA---GAGESPWQWLLLL 220 (223)
Q Consensus 164 --~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~rg~---~~~~~~~~~~~~l 220 (223)
....+.++++ ++++.++.+..-.+ |..++|.+...+.++.+-|. +-...+|++.|.+
T Consensus 370 ~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~ 433 (467)
T PRK09556 370 IGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAA 433 (467)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHH
Confidence 1234555554 88999998766554 76778888777776322222 1112347766643
No 115
>PRK09952 shikimate transporter; Provisional
Probab=98.37 E-value=4.4e-06 Score=75.94 Aligned_cols=77 Identities=10% Similarity=0.041 Sum_probs=49.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh---h-hhHHHHHHHHHHHhhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA---A-LNIYMLIFGRVLLGVGIGFTNQ 162 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~---a-~~~~~l~v~r~l~G~g~g~~~~ 162 (223)
++......+.........++.++.|++.||+|||+.++.+.++..++.+.... . ++...+++..++.+++.+...+
T Consensus 283 ~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 362 (438)
T PRK09952 283 LPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVC 362 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555566677888899999999999999988877665544332222 1 2233334455666777666555
Q ss_pred h
Q 027462 163 C 163 (223)
Q Consensus 163 ~ 163 (223)
.
T Consensus 363 ~ 363 (438)
T PRK09952 363 V 363 (438)
T ss_pred H
Confidence 5
No 116
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.35 E-value=5.3e-06 Score=75.39 Aligned_cols=116 Identities=8% Similarity=0.009 Sum_probs=86.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh--h--hhHHHHHHHHHHHhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA--A--LNIYMLIFGRVLLGVGIGFTN 161 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~--a--~~~~~l~v~r~l~G~g~g~~~ 161 (223)
++++.+.+++.....++..++.++.|++.||+|||+.+.++..+..++.++..+ . .+...++...++.|+|.+...
T Consensus 287 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~ 366 (485)
T TIGR00711 287 GYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFF 366 (485)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999999999998888877766552 1 345556666788898888766
Q ss_pred hhhh--hcccccc-cccccccchhhhcccCccchhhhhhhccC
Q 027462 162 QCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 162 ~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
+... ..+..++ +++++.+..+....+|..+++.+...+..
T Consensus 367 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 367 MPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 2223333 37777777777777777777766655543
No 117
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.32 E-value=6.7e-06 Score=76.02 Aligned_cols=104 Identities=18% Similarity=0.205 Sum_probs=75.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh----hH---HH-H-HHHHHHHh--h
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL----NI---YM-L-IFGRVLLG--V 155 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~----~~---~~-l-~v~r~l~G--~ 155 (223)
+++.+..+.+....+...+..+++.++.||+|||+.++++..+..+..++..... .. .. + +++.++.. +
T Consensus 302 ~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f 381 (485)
T KOG0569|consen 302 FTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISF 381 (485)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 7899999999999999999999999999999999999999999988877666541 11 11 1 22222222 2
Q ss_pred hhhhhhhhhhhcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccc---hhhhhhhh
Q 027462 156 GIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGE---SPWQWLLL 219 (223)
Q Consensus 156 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~---~~~~~~~~ 219 (223)
+.|. -+. ...+.+|++|++-|..+.+. .+|-.+|.
T Consensus 382 ~~G~-gpi----------------------------~~fi~aELf~~~~R~aa~s~~~~~~w~~~fi 419 (485)
T KOG0569|consen 382 AIGP-GPI----------------------------PWFIGAELFPQSARSAAQSVATAVNWLSNFI 419 (485)
T ss_pred hcCC-Cch----------------------------hHHHHHHhCCccchHHHHHHHHHHHHHHHHH
Confidence 2222 122 56789999999999988875 35555544
No 118
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.31 E-value=7.6e-06 Score=74.09 Aligned_cols=45 Identities=11% Similarity=0.243 Sum_probs=37.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHH
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFL 131 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~ 131 (223)
++..+.+...+...+...++.++.|++.||+|||+.+.++.++..
T Consensus 276 ~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~ 320 (432)
T PRK10406 276 MHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAA 320 (432)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 577788888888888888889999999999999998877665443
No 119
>PRK15075 citrate-proton symporter; Provisional
Probab=98.31 E-value=9.4e-06 Score=73.52 Aligned_cols=112 Identities=13% Similarity=0.011 Sum_probs=64.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHH-HHh---hhhhHHHHHHHHHHHhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSA-IGG---AALNIYMLIFGRVLLGVGIGFTN 161 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l-~~~---~a~~~~~l~v~r~l~G~g~g~~~ 161 (223)
+++..+.++......++..++.++.|++.||+|||+++..+.++..+..+ ... ..++...+.+..++.|++.+...
T Consensus 270 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 349 (434)
T PRK15075 270 HLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYN 349 (434)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence 36778888888888899999999999999999999988776554432221 111 12233333333444445544433
Q ss_pred hhh--hhcccccc-cccccccch-hhhcccCccchhhhhh
Q 027462 162 QCR--YISQKWHH-QNTEEHSPL-ASKYVLPLVSYPLIFS 197 (223)
Q Consensus 162 ~~~--~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~ 197 (223)
+.. ..++.+++ +|++.++.. +.+..++..++|.+..
T Consensus 350 ~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g 389 (434)
T PRK15075 350 GAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAIST 389 (434)
T ss_pred hhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHH
Confidence 321 13444444 366666653 2233333334555443
No 120
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.30 E-value=2.4e-06 Score=77.40 Aligned_cols=114 Identities=11% Similarity=0.060 Sum_probs=89.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh-h---hHHHHHHHHHHHhhhhhhhhhh
Q 027462 88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA-L---NIYMLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a-~---~~~~l~v~r~l~G~g~g~~~~~ 163 (223)
+....+.+.+...++..++.++.+++.||+|||+++.++.++..++..+.... . ++..+++.+++.|++.+...+.
T Consensus 249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~ 328 (418)
T TIGR00889 249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS 328 (418)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999888776655553 2 2456677889999888776554
Q ss_pred hh--hccccccc-ccccccchh-hhcccCccchhhhhhhccC
Q 027462 164 RY--ISQKWHHQ-NTEEHSPLA-SKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 164 ~~--~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~p 201 (223)
.. ..+..+++ |+++++..+ ..+++|.+++|.+...+.+
T Consensus 329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~ 370 (418)
T TIGR00889 329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVE 370 (418)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 32 56666554 899999997 6788888888887765554
No 121
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=98.28 E-value=3.8e-06 Score=74.67 Aligned_cols=114 Identities=8% Similarity=0.056 Sum_probs=86.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY- 165 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~- 165 (223)
.++.+.+.+.+...++..+..++.+++.||+|+|+.+..+.++..++.+..+.+++.+.+++..++.|++.+...+...
T Consensus 237 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 316 (382)
T PRK11128 237 YSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMR 316 (382)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888889998888899999999999999999999999999988888877777888888888899999998887655432
Q ss_pred -hcccccccccccccchh-hhcccCccchhhhhhhcc
Q 027462 166 -ISQKWHHQNTEEHSPLA-SKYVLPLVSYPLIFSITA 200 (223)
Q Consensus 166 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 200 (223)
.++.-.+++.+.++.+. ...++|..++|.+...+.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~ 353 (382)
T PRK11128 317 YIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLY 353 (382)
T ss_pred HHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334566777775 434556556666544444
No 122
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.28 E-value=8.3e-06 Score=73.22 Aligned_cols=116 Identities=6% Similarity=0.037 Sum_probs=88.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY 165 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~ 165 (223)
+.++.+.+++.+...++..++.++.+++.||.++++.+..+.++..++.++..+.++...+.+..++.|++.+...+...
T Consensus 255 g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 334 (417)
T PRK10489 255 QMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQY 334 (417)
T ss_pred CCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999999999999999999998878888888887777777777777777777788888888776555432
Q ss_pred --hccccccc-ccccccchhhhcccCccchhhhhhhccC
Q 027462 166 --ISQKWHHQ-NTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 166 --~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
..+..+++ |.++.+.......+|..++|.+...+..
T Consensus 335 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~ 373 (417)
T PRK10489 335 TLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA 373 (417)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Confidence 34444443 7888888877777777777776655543
No 123
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.27 E-value=6.9e-06 Score=71.99 Aligned_cols=111 Identities=14% Similarity=0.061 Sum_probs=75.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhh-chhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAF-GRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY 165 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~-Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~ 165 (223)
.+..+.+.+.+...++.+++.++.|++.||+ +||+.+.++.++..++.+...+.++..... .-++.|++.|...+...
T Consensus 229 ~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~ 307 (355)
T TIGR00896 229 ASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLAL 307 (355)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHH
Confidence 5888999999999999999999999999999 566677777777777666555554322222 34677888887766532
Q ss_pred --hccccc--ccccccccchhhhcccCccchhhhhhh
Q 027462 166 --ISQKWH--HQNTEEHSPLASKYVLPLVSYPLIFSI 198 (223)
Q Consensus 166 --~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (223)
..++.. ++++..++...+...++..++|.+..-
T Consensus 308 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~ 344 (355)
T TIGR00896 308 TLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGV 344 (355)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332 235666666666555555566654433
No 124
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.27 E-value=8.5e-06 Score=73.81 Aligned_cols=77 Identities=9% Similarity=-0.079 Sum_probs=65.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhch-hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGR-KASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQ 162 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Gr-k~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~ 162 (223)
+++.++.+++.+...++..+++++.|.+.||+|| |+++.++.++..+......+.++++.+++.|++.|++.+...+
T Consensus 34 g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 111 (418)
T TIGR00889 34 HFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIA 111 (418)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHH
Confidence 4799999999999999999999999999999965 7788888888877777777888888888999988886654444
No 125
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.26 E-value=1.4e-05 Score=73.05 Aligned_cols=116 Identities=9% Similarity=-0.076 Sum_probs=79.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA--LNIYMLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a--~~~~~l~v~r~l~G~g~g~~~~~ 163 (223)
+++..+.+++.+...++..++.++.|++.||+|||+++.++.++..+..+..... .+...+.+..++.++......+.
T Consensus 307 g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (496)
T PRK03893 307 GYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGL 386 (496)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchh
Confidence 3689999999999999999999999999999999999888776665554433322 23333333334333222112222
Q ss_pred h--hhcccccc-cccccccchhhhcccCccchhhhhhhccC
Q 027462 164 R--YISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 164 ~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
. ...+.+++ +|.++++.......+|..++|.+..-+.+
T Consensus 387 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~ 427 (496)
T PRK03893 387 LPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQ 427 (496)
T ss_pred hHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhc
Confidence 1 24555554 48899999888888888888877665544
No 126
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.23 E-value=1.1e-05 Score=71.80 Aligned_cols=114 Identities=11% Similarity=0.103 Sum_probs=84.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--
Q 027462 88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY-- 165 (223)
Q Consensus 88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~-- 165 (223)
+....+.+.+...+...++.+..+++.||+|||+.+.++.++..+...+...+++.+++++.+++.|++.+.......
T Consensus 252 ~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 331 (396)
T TIGR00882 252 GTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKY 331 (396)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888888899999999999999999999999888888777767777888888889999988765443221
Q ss_pred hccccccc-ccccccc-hhhhcccCccchhhhhhhccC
Q 027462 166 ISQKWHHQ-NTEEHSP-LASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 166 ~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~p 201 (223)
.....++| +...++. .+....+|..++|.+.....+
T Consensus 332 ~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~ 369 (396)
T TIGR00882 332 ITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD 369 (396)
T ss_pred HHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33334444 4455555 456677888888876666655
No 127
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.23 E-value=9.6e-06 Score=72.95 Aligned_cols=115 Identities=14% Similarity=0.100 Sum_probs=89.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh--
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR-- 164 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~-- 164 (223)
.+..+.+++.+...+...++.++.|++.||+|+|+.+.++.++..++.++.+++++...+++.+++.|++.+......
T Consensus 259 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 338 (420)
T PRK09528 259 QGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFK 338 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366778999999999999999999999999999999999999888888888888888888888999988877655443
Q ss_pred hhccccccc-ccccccc-hhhhcccCccchhhhhhhccC
Q 027462 165 YISQKWHHQ-NTEEHSP-LASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 165 ~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~p 201 (223)
+.++..++| +.+.++. .+....+|.+++|.+..-+.+
T Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~ 377 (420)
T PRK09528 339 YITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD 377 (420)
T ss_pred HHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 244555554 6666555 456667888877776655544
No 128
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.23 E-value=1.2e-05 Score=81.01 Aligned_cols=108 Identities=11% Similarity=0.015 Sum_probs=82.8
Q ss_pred CChh-HHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462 87 FDSQ-LLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY 165 (223)
Q Consensus 87 ~s~~-~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~ 165 (223)
++.. ..+++.+...++.+++.++.+++.||+++|+.+.++.++..++.++..+..+...+++..++.|++.+...+...
T Consensus 265 ~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 344 (1146)
T PRK08633 265 LDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLN 344 (1146)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5777 889999999999999999999999999999888888888887777777777877788888888988887666532
Q ss_pred --hcccccc-cccccccchhhhcccCccchhh
Q 027462 166 --ISQKWHH-QNTEEHSPLASKYVLPLVSYPL 194 (223)
Q Consensus 166 --~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 194 (223)
......+ .|+++++..+....+|.++++.
T Consensus 345 ~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~ 376 (1146)
T PRK08633 345 ALIQFRAPEKELGKVLAANNFLQNVGMLLFLA 376 (1146)
T ss_pred HHHhhcCCccchhhhhHHHHHHHHHHHHHHHH
Confidence 3333333 3777777776666666554443
No 129
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.20 E-value=2.3e-05 Score=72.47 Aligned_cols=115 Identities=10% Similarity=-0.043 Sum_probs=83.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA---ALNIYMLIFGRVLLGVGIGFTNQ 162 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~---a~~~~~l~v~r~l~G~g~g~~~~ 162 (223)
+.++.+.+.......++..++.++.|++.||+|+|+.+..+.++..++.+.... ..+.....+..++.|+|.|...+
T Consensus 291 g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~ 370 (495)
T PRK14995 291 GLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALL 370 (495)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHH
Confidence 468999999999999999999999999999999999988888877776654433 23444556677888999888766
Q ss_pred hhh--hcccc-cccccccccchhhhcccCccchhhhhhhcc
Q 027462 163 CRY--ISQKW-HHQNTEEHSPLASKYVLPLVSYPLIFSITA 200 (223)
Q Consensus 163 ~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
... .-... +++++.+.+..+....+|..+++.+...++
T Consensus 371 ~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~ 411 (495)
T PRK14995 371 ASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL 411 (495)
T ss_pred HHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 22222 334677777777777777666666555544
No 130
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.20 E-value=2.8e-05 Score=66.98 Aligned_cols=100 Identities=23% Similarity=0.279 Sum_probs=82.0
Q ss_pred CC-hhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHhhhhhhhhh
Q 027462 87 FD-SQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL---NIYMLIFGRVLLGVGIGFTNQ 162 (223)
Q Consensus 87 ~s-~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~---~~~~l~v~r~l~G~g~g~~~~ 162 (223)
++ ..+.+++.+...+...++.++.+++.||+|+|+...+......+..+...+.. +..+.++.-++.|++.+...+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 318 (352)
T PF07690_consen 239 FSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFP 318 (352)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 57 78899999999999999999999999999998887777777777666655543 456677778889999998888
Q ss_pred hhhhcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccchhh
Q 027462 163 CRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPW 214 (223)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~ 214 (223)
. ...+..+..|++.||++.++.+.
T Consensus 319 ~----------------------------~~~~~~~~~~~~~~g~~~g~~~~ 342 (352)
T PF07690_consen 319 I----------------------------LFSLIQELVPPEYRGTAFGLFNS 342 (352)
T ss_dssp H----------------------------HHHHHHCCCHTCHHHHHHHHHHH
T ss_pred H----------------------------HHHHHHHhCCHHHHHHHHHHHHH
Confidence 8 78888999999999988887543
No 131
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.19 E-value=1.2e-05 Score=72.09 Aligned_cols=115 Identities=10% Similarity=0.038 Sum_probs=80.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHH-HHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASIL-VGGTAFLAGSAIGGA-----ALNIYMLIFGRVLLGVGIGFT 160 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~-~~~l~~~~~~l~~~~-----a~~~~~l~v~r~l~G~g~g~~ 160 (223)
++..+.+++.+...++..++.++.|++.||+|||+.+. .+.+...+..+...+ .++...+++..++.|++.+..
T Consensus 254 ~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 333 (402)
T TIGR00897 254 FSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGY 333 (402)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Confidence 57888888888899999999999999999999987764 233333333222222 234555666777778777655
Q ss_pred hhhhh-hcccccccccccccchhhhcccCccchhhhhhhccC
Q 027462 161 NQCRY-ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 161 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
.+... .++..+++|+++++.++....+|..++|.+...+..
T Consensus 334 ~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~ 375 (402)
T TIGR00897 334 VPLAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIG 375 (402)
T ss_pred HHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43322 333345568999999999999998888887766654
No 132
>PRK10504 putative transporter; Provisional
Probab=98.19 E-value=1.8e-05 Score=72.01 Aligned_cols=113 Identities=12% Similarity=0.040 Sum_probs=78.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA---LNIYMLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a---~~~~~l~v~r~l~G~g~g~~~~~ 163 (223)
.++.+.+++.....++..++.++.+++.||+|||+.+..+.++..+..++..+. .+...+.+..++.|++.+...+.
T Consensus 294 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 373 (471)
T PRK10504 294 FSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSS 373 (471)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 578888999988889999999999999999999999998888777766555443 23333344556667766665554
Q ss_pred hh--hccccccc-ccccccchhhhcccCccchhhhhhhc
Q 027462 164 RY--ISQKWHHQ-NTEEHSPLASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 164 ~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
.. ..+...++ ++.+++..+....+|..+++.+..-+
T Consensus 374 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l 412 (471)
T PRK10504 374 MNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL 412 (471)
T ss_pred HHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 33334444 77777777777777766666654433
No 133
>PRK03545 putative arabinose transporter; Provisional
Probab=98.17 E-value=1.2e-05 Score=71.52 Aligned_cols=113 Identities=10% Similarity=0.038 Sum_probs=77.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGS-AIGGAALNIYMLIFGRVLLGVGIGFTNQCRY 165 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~-l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~ 165 (223)
.+..+.+++.+...++..++.++.+++.||++||+... +..+..++. ++....++...+++..++.|++.+...+...
T Consensus 238 ~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 316 (390)
T PRK03545 238 LSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQ 316 (390)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHH
Confidence 57888999999999999999999999999999887544 444443333 3334456667777778888887655444322
Q ss_pred --hcccccccccccccchhhhcccCccchhhhhhhcc
Q 027462 166 --ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITA 200 (223)
Q Consensus 166 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
..+..++.|.++++.+...+.+|..++|.+...+.
T Consensus 317 ~~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~ 353 (390)
T PRK03545 317 VKVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVS 353 (390)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455777888887777777766766554443
No 134
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.13 E-value=2.5e-05 Score=73.13 Aligned_cols=107 Identities=17% Similarity=0.235 Sum_probs=77.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHhhhhhhhhh
Q 027462 88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA-----LNIYMLIFGRVLLGVGIGFTNQ 162 (223)
Q Consensus 88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a-----~~~~~l~v~r~l~G~g~g~~~~ 162 (223)
|+..++++..+..+-.++.++++|.++||++||++++.+-++..+..++.++. .+.+.+++..++.|++.+...+
T Consensus 43 S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~P 122 (524)
T PF05977_consen 43 SPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNP 122 (524)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999998887665544432 3667788889999999998888
Q ss_pred hhh--hcccccc-cccccccchhhhcccCccchhh
Q 027462 163 CRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPL 194 (223)
Q Consensus 163 ~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 194 (223)
+.. +++.-++ +-+.+.+..+..+.+.-+++|.
T Consensus 123 A~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPa 157 (524)
T PF05977_consen 123 AWQAIIPELVPKEDLPAANALNSISFNIARIIGPA 157 (524)
T ss_pred HHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccch
Confidence 732 3333322 2344444444444444444444
No 135
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.12 E-value=2.3e-05 Score=72.61 Aligned_cols=110 Identities=14% Similarity=0.119 Sum_probs=72.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHh----hhchhHHHHHH-HHHHHHHHHHHhhhhhHH-----------------
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTR----AFGRKASILVG-GTAFLAGSAIGGAALNIY----------------- 144 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~d----r~Grk~~~~~~-~l~~~~~~l~~~~a~~~~----------------- 144 (223)
++....+++.....+..++..++.|.++| |+|||+++++. .+...++.++.++++++.
T Consensus 36 ~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~ 115 (477)
T TIGR01301 36 IPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAII 115 (477)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHH
Confidence 68999999999999999999999999999 59999998875 444445555666654432
Q ss_pred HHHHHHHHHhhhhhhhhh-hhh-hcccccc--cc-cccccchhhhcccCccchhhhh
Q 027462 145 MLIFGRVLLGVGIGFTNQ-CRY-ISQKWHH--QN-TEEHSPLASKYVLPLVSYPLIF 196 (223)
Q Consensus 145 ~l~v~r~l~G~g~g~~~~-~~~-~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~ 196 (223)
.++++-.+..++.....+ .++ ..+...+ || ..+.+..+..-.+|.++++.+.
T Consensus 116 ~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g 172 (477)
T TIGR01301 116 VFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAG 172 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222223332222 222 5555533 23 4678887777788888777654
No 136
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.12 E-value=1.9e-05 Score=71.76 Aligned_cols=108 Identities=11% Similarity=0.117 Sum_probs=67.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh--hH--HHHHHHHHHHhhhhhhhh-
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL--NI--YMLIFGRVLLGVGIGFTN- 161 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~--~~--~~l~v~r~l~G~g~g~~~- 161 (223)
.+.....+......+..+++.++.+++.||+|||+.++.+.++..++.++.+... +. ...+...++.+.+.+...
T Consensus 303 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (479)
T PRK10077 303 ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWG 382 (479)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcccc
Confidence 4555566666777788899999999999999999999999998888776655431 11 122223333333333221
Q ss_pred hhh--hhccccccc-ccccccchhhhcccCccchhh
Q 027462 162 QCR--YISQKWHHQ-NTEEHSPLASKYVLPLVSYPL 194 (223)
Q Consensus 162 ~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 194 (223)
+.. ..++.+.++ |+.+++.......+|.++++.
T Consensus 383 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~ 418 (479)
T PRK10077 383 PVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSW 418 (479)
T ss_pred chhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 144455443 777777766666666655543
No 137
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.12 E-value=2.1e-05 Score=69.82 Aligned_cols=110 Identities=13% Similarity=-0.036 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcc
Q 027462 91 LLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQ 168 (223)
Q Consensus 91 ~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~ 168 (223)
..+.+.+...++..++.+..|++.||+|||+.+..+.++..++.+.....++...+.+.+++.|++.+...+... ..+
T Consensus 259 ~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 338 (408)
T PRK09874 259 ISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVY 338 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence 345666777788889999999999999999999988887777776666667777778889999998887766532 333
Q ss_pred cccc-cccccccchhhhcccCccchhhhhhhcc
Q 027462 169 KWHH-QNTEEHSPLASKYVLPLVSYPLIFSITA 200 (223)
Q Consensus 169 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
..++ ++++.++.......+|..++|.+..-+.
T Consensus 339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~ 371 (408)
T PRK09874 339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAIS 371 (408)
T ss_pred hCCcccceeeehHHHHHHHHHHHhhHHHHHHHH
Confidence 3333 4788888888888888888887655443
No 138
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.12 E-value=3e-05 Score=69.44 Aligned_cols=113 Identities=8% Similarity=0.018 Sum_probs=71.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh--hhhhhh-
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGI--GFTNQC- 163 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~--g~~~~~- 163 (223)
.++.+.+.+.+...++..++.++.|++.||+|||+.+..+.++..+..+.....++.....+.-++.|++. ......
T Consensus 263 ~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (426)
T PRK12307 263 FDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLV 342 (426)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHH
Confidence 57788888888899999999999999999999999988887776655443332221111112222233221 111111
Q ss_pred -hhhccccccc-ccccccchhhhcccCccchhhhhhhc
Q 027462 164 -RYISQKWHHQ-NTEEHSPLASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 164 -~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
....+.+.++ |+++++.......+|.+++|.+..-+
T Consensus 343 ~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l 380 (426)
T PRK12307 343 PKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWL 380 (426)
T ss_pred HHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence 1244555443 78888877777777777777755433
No 139
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.10 E-value=4.2e-05 Score=65.09 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=86.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA-------LNIYMLIFGRVLLGVGIG 158 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a-------~~~~~l~v~r~l~G~g~g 158 (223)
+++.++...+.++-.+|..+ .++.|.+.|++|++.++.+|.....+++....++ .+++.+.+..++.|.+.+
T Consensus 33 ~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~ 111 (250)
T PF06813_consen 33 GYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSC 111 (250)
T ss_pred CCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHH
Confidence 47999999999999999987 4888999999999999999999999998877664 345666676777776655
Q ss_pred hhhhhhh-hc-ccccccccccccchhhhcccCccchhhhhhhccCCC
Q 027462 159 FTNQCRY-IS-QKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKR 203 (223)
Q Consensus 159 ~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 203 (223)
....+.. .+ ..|++.|+.+.++.-+..++++.+...+-.-+++.+
T Consensus 112 ~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~ 158 (250)
T PF06813_consen 112 WFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDD 158 (250)
T ss_pred HhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCC
Confidence 5433321 11 234445777888888888877776665555555553
No 140
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.10 E-value=9.7e-05 Score=64.73 Aligned_cols=109 Identities=12% Similarity=0.159 Sum_probs=77.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA-----LNIYMLIFGRVLLGVGIGFT 160 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a-----~~~~~l~v~r~l~G~g~g~~ 160 (223)
+.++.+.+++.+...++..++.++.+++.||+|+|+.+..+..+..++.++.... +....+++..++.|++.+..
T Consensus 238 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 317 (385)
T TIGR00710 238 GVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMI 317 (385)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 3688899999999999999999999999999999999888887777766555443 23344455566777877766
Q ss_pred hhhhh--hcccccccccccccchhhhc-ccCccchhh
Q 027462 161 NQCRY--ISQKWHHQNTEEHSPLASKY-VLPLVSYPL 194 (223)
Q Consensus 161 ~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 194 (223)
.+... ..+..+++++++.+..+... .+|.+.+|.
T Consensus 318 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~ 354 (385)
T TIGR00710 318 SSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYL 354 (385)
T ss_pred HHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 65432 33444556777777766554 355555554
No 141
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.07 E-value=3.4e-05 Score=70.57 Aligned_cols=115 Identities=9% Similarity=-0.024 Sum_probs=85.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhh--hchhHHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRA--FGRKASILVG--GTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQ 162 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr--~Grk~~~~~~--~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~ 162 (223)
++..+.+++.+...++..++.++.|++.|| +++|+...+. .++..++.++..+.++++.+++.+++.|++.+...+
T Consensus 273 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~ 352 (455)
T TIGR00892 273 VDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGA 352 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHH
Confidence 688999999999999999999999999997 3444433333 333334445556677888888889999998887666
Q ss_pred hhh--hcccccc-cccccccchhhhcccCccchhhhhhhccC
Q 027462 163 CRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 163 ~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
... ..+..++ ++.+.++.+.....+|.+++|.+..-+..
T Consensus 353 ~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~ 394 (455)
T TIGR00892 353 LLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVD 394 (455)
T ss_pred HHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeeh
Confidence 543 4444444 48899999999999999999987765554
No 142
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.07 E-value=3.2e-05 Score=69.22 Aligned_cols=112 Identities=11% Similarity=0.037 Sum_probs=74.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA-ALNIYMLIFGRVLLGVGIGFTNQCRY 165 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~-a~~~~~l~v~r~l~G~g~g~~~~~~~ 165 (223)
.+..+.+...+.+.++..++.++.+++.||+|||+.+.++..+..++.++... .++...+. -++.|++.+...+...
T Consensus 237 ~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~l~g~g~g~~~~~~~ 314 (393)
T PRK09705 237 ASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--AMVCGLGLGGAFPLCL 314 (393)
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--HHHHHHhccchHHHHH
Confidence 68888999999999999999999999999999999988887777666554432 33322222 2455666666555432
Q ss_pred --hcccccc--cccccccchhhhcccCccchhhhhhhcc
Q 027462 166 --ISQKWHH--QNTEEHSPLASKYVLPLVSYPLIFSITA 200 (223)
Q Consensus 166 --~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
..+...+ .+++.++.......++..++|.+..-..
T Consensus 315 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~ 353 (393)
T PRK09705 315 LLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLR 353 (393)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333322 3666777666666666666665544333
No 143
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.07 E-value=4.7e-05 Score=66.39 Aligned_cols=114 Identities=11% Similarity=0.046 Sum_probs=81.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY 165 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~ 165 (223)
++++++.+...+.+..+..++.++.+++.||+|+|+.+.++.++..++.++....++.. ..+.-++.|++.+..++...
T Consensus 174 g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~-~~~~~~l~g~~~s~i~P~~~ 252 (310)
T TIGR01272 174 GLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYV-AMWFVLALGLFNSIMFPTIF 252 (310)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999988888877777665554443322 22344577888888888743
Q ss_pred --hcccccccccccccchhhhcccCccchhhhhhhccC
Q 027462 166 --ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 166 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
..+...++..++-++. ....+|..+.|.+...+.+
T Consensus 253 s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad 289 (310)
T TIGR01272 253 SLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLAD 289 (310)
T ss_pred HHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHH
Confidence 3333333333444554 4445888889987766655
No 144
>PRK03633 putative MFS family transporter protein; Provisional
Probab=98.07 E-value=4e-05 Score=68.06 Aligned_cols=111 Identities=14% Similarity=0.093 Sum_probs=75.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY- 165 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~- 165 (223)
.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..++.+... . ........++.|++.+...+...
T Consensus 232 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~~~ 308 (381)
T PRK03633 232 MSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVAMA 308 (381)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5788889999999999999999999999999999998888777766554332 1 22333456666765554444432
Q ss_pred -hcccccc-cccccccchhhhcccCccchhhhhhhcc
Q 027462 166 -ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITA 200 (223)
Q Consensus 166 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
..+..++ ++..+.+.....+.+|.+++|.+...+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~ 345 (381)
T PRK03633 309 WACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLM 345 (381)
T ss_pred HHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 3344555556678888888887655443
No 145
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.06 E-value=7.9e-05 Score=66.14 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=68.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR 164 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~ 164 (223)
+++..+++.+....+...++..++.|.++||+|||+.-++.+++..++++ +-..++++.++++|++.|++-.....+.
T Consensus 65 g~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~F 142 (354)
T PF05631_consen 65 GFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAF 142 (354)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999998888888877764 4555789999999999999888777653
No 146
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.06 E-value=4.5e-05 Score=68.10 Aligned_cols=114 Identities=11% Similarity=0.120 Sum_probs=77.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh-----h------hHHHHHHHHHH-Hh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA-----L------NIYMLIFGRVL-LG 154 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a-----~------~~~~l~v~r~l-~G 154 (223)
++..+.++......++..++.++.+++.||+|||+.+.++.++..++.++.++. + +...+....++ .+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (481)
T TIGR00879 316 VSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAF 395 (481)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHH
Confidence 567777888888999999999999999999999999998887777766655521 1 22222222222 22
Q ss_pred hhhhhhhhhh--hhcccccc-cccccccchhhhcccCccchhhhhhhccC
Q 027462 155 VGIGFTNQCR--YISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 155 ~g~g~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
++.+. .+.. ..++.+++ +|+++++.......+|.+++|.+...+.+
T Consensus 396 ~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~ 444 (481)
T TIGR00879 396 FAMGW-GPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE 444 (481)
T ss_pred HHccc-cCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 1211 13566655 48889999988888888888877665544
No 147
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.03 E-value=5.8e-05 Score=70.74 Aligned_cols=97 Identities=10% Similarity=0.189 Sum_probs=82.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYI 166 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~~ 166 (223)
.++...|++.++..+|.+++.++.+++.+|+++++.+..+.++..++.+..+++++.+..++..++.|++.......
T Consensus 251 ~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~--- 327 (524)
T PF05977_consen 251 GGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSS--- 327 (524)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH---
Confidence 48899999999999999999999999999999999988899988888888999999888888888999888877766
Q ss_pred cccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccc
Q 027462 167 SQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGE 211 (223)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~ 211 (223)
......+..|++.||++.++
T Consensus 328 -------------------------~~t~~Q~~~P~~~~GRv~si 347 (524)
T PF05977_consen 328 -------------------------LNTLVQLSVPDWVRGRVFSI 347 (524)
T ss_pred -------------------------HHHHHHHhCCHHHHhHHHHH
Confidence 45556666666666666654
No 148
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.01 E-value=9.1e-05 Score=67.49 Aligned_cols=115 Identities=10% Similarity=0.065 Sum_probs=84.6
Q ss_pred CchHHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHH
Q 027462 28 KMTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIAS 107 (223)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~ 107 (223)
|.-.++|...++.++.++..++...-+++++ .+.+.|. + +.....|+.-++.+.+..-.
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~---n~~~~~Y-----------------g-s~~~~~wlsmIym~v~vp~g 96 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPIN---NYVNSFY-----------------G-SSSAADWLSMIYMVVSVPFG 96 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHH---HHHHHHh-----------------c-chHHHHHHHHHHHHHHHHHh
Confidence 4555667677777777777777776665443 3333332 2 56777889999999999999
Q ss_pred HhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh------hHH--HHHHHHHHHhhhhhhhhhh
Q 027462 108 LFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL------NIY--MLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 108 ~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~------~~~--~l~v~r~l~G~g~g~~~~~ 163 (223)
+.+-|+.|++|-|...+++..+.++++.+-..+. .++ ..+.+..+.+...-..+..
T Consensus 97 f~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~l 160 (480)
T KOG2563|consen 97 FAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGL 160 (480)
T ss_pred hHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhcc
Confidence 9999999999999999999999999998866652 222 5566777777666555554
No 149
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.01 E-value=3e-05 Score=67.29 Aligned_cols=114 Identities=13% Similarity=-0.027 Sum_probs=66.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhch-hHH-HHHHHHH-HHHHHHHHhh--hhhHHHHHHHHHHHhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGR-KAS-ILVGGTA-FLAGSAIGGA--ALNIYMLIFGRVLLGVGIGFT 160 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Gr-k~~-~~~~~l~-~~~~~l~~~~--a~~~~~l~v~r~l~G~g~g~~ 160 (223)
++++.+.+++.+...++..++.++.+++.||..+ |+. +...... ..++...... ..+....++..++.|+.....
T Consensus 248 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 327 (379)
T TIGR00881 248 GFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGP 327 (379)
T ss_pred CCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhh
Confidence 3688899999999999999999999999998643 332 2221111 1122222222 234444445555666544333
Q ss_pred hhhh--hhcccccc-cccccccchhhhcccCccchhhhhhhc
Q 027462 161 NQCR--YISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 161 ~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
.... ..++..++ +|+++.+..+....+|..++|.+..-+
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 369 (379)
T TIGR00881 328 QMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYL 369 (379)
T ss_pred hHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHH
Confidence 3321 13444433 377777777777777777776654433
No 150
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.98 E-value=0.0002 Score=63.97 Aligned_cols=115 Identities=15% Similarity=0.081 Sum_probs=84.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA-----LNIYMLIFGRVLLGVGIGFTN 161 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a-----~~~~~l~v~r~l~G~g~g~~~ 161 (223)
+++.+.++......++..++.++.+++.||+++|+.+.++.++..++.++..+. .+..++++..++.|+|.+...
T Consensus 248 ~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~ 327 (406)
T PRK15402 248 LSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLAN 327 (406)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHh
Confidence 578888888888888899999999999999999999988888777766655543 345667777888888888765
Q ss_pred hhhh--hcccccccccccccchhhhcccCccchhhhhhhccC
Q 027462 162 QCRY--ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 162 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
+... .-...++++++..+.++....++..+++.+..-..+
T Consensus 328 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~ 369 (406)
T PRK15402 328 AGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL 369 (406)
T ss_pred hhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5432 111223457788888877777777677766655544
No 151
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.97 E-value=9.1e-06 Score=72.96 Aligned_cols=110 Identities=11% Similarity=0.077 Sum_probs=76.6
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhHHhHHhh----hchhH-HHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHH
Q 027462 85 CKFDSQLLAAFTSSLYISGLIASLFASTVTRA----FGRKA-SILVGGTAFLAGSAIGGAALN------IYMLIFGRVLL 153 (223)
Q Consensus 85 ~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr----~Grk~-~~~~~~l~~~~~~l~~~~a~~------~~~l~v~r~l~ 153 (223)
+++++.+.+++.+...+...+..|+.|++.|| +|||+ .++.+.+...++.+++...++ ..++++.+++.
T Consensus 30 ~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (437)
T TIGR00792 30 LGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILL 109 (437)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 35799999999999999999999999999998 67744 566777777777666655432 45566677777
Q ss_pred hhhhhhhhhhhh--hccccc--ccccccccchhhhcccCccchhh
Q 027462 154 GVGIGFTNQCRY--ISQKWH--HQNTEEHSPLASKYVLPLVSYPL 194 (223)
Q Consensus 154 G~g~g~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 194 (223)
+++.+....... .++..+ ++|+++.+.-.....+|.++.+.
T Consensus 110 ~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~ 154 (437)
T TIGR00792 110 GLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAV 154 (437)
T ss_pred HHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777765433221 334443 34777777766666666655443
No 152
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.96 E-value=5.1e-05 Score=66.20 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=43.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGG 138 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~ 138 (223)
++++.+.+++.+...+...++.++.|++.||+|||+.+..+.....++..+..
T Consensus 257 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~ 309 (366)
T TIGR00886 257 GLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVV 309 (366)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHH
Confidence 36788899889999999999999999999999998887777766666554444
No 153
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.95 E-value=8.8e-05 Score=66.57 Aligned_cols=114 Identities=20% Similarity=0.230 Sum_probs=83.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462 88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA-LNIYMLIFGRVLLGVGIGFTNQCRY- 165 (223)
Q Consensus 88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a-~~~~~l~v~r~l~G~g~g~~~~~~~- 165 (223)
++...+++.+...++.+++.++.+++.||+|+|+.+.++.++..++.+...+. ++...+++..++.|++.+...+...
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777888889999999999999999999999999988887776665554 3555666677778888776655432
Q ss_pred -hccc-----c--cc-cccccccchhhhcccCccchhhhhhhccC
Q 027462 166 -ISQK-----W--HH-QNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 166 -~~~~-----~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
.++. + .+ +++.+++..+....+|..+++.+..-+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 1 12 36777888888888888888887777665
No 154
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.95 E-value=6.5e-05 Score=75.98 Aligned_cols=114 Identities=10% Similarity=-0.002 Sum_probs=76.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh--------------------hhHHH
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA--------------------LNIYM 145 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a--------------------~~~~~ 145 (223)
+.++...+++.+...++.+++.++.|++.++.++++.+..+.++..++.+..++. .+.+.
T Consensus 257 g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1140)
T PRK06814 257 GGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWR 336 (1140)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHH
Confidence 3588999999999999999999999999988877666555555555444333332 45566
Q ss_pred HHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccchhhhhhhc
Q 027462 146 LIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 146 l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
+++..++.|++.+...+... +.....+ .++++++..+....+|..+++.+..-+
T Consensus 337 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l 393 (1140)
T PRK06814 337 ILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALL 393 (1140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888887766532 2233333 266666666666555555555544433
No 155
>PF13347 MFS_2: MFS/sugar transport protein
Probab=97.93 E-value=7e-05 Score=67.69 Aligned_cols=75 Identities=16% Similarity=0.260 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHhhhhhhhhhh
Q 027462 89 SQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL--NIYMLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 89 ~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~--~~~~l~v~r~l~G~g~g~~~~~ 163 (223)
+...+.+.....++..++.++.+++.||+|+|+.+..+.++..++.+...+.+ +.+.+++..++.|++.+.....
T Consensus 259 ~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~ 335 (428)
T PF13347_consen 259 EGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVI 335 (428)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccc
Confidence 45677788888999999999999999999999999999999999888877775 8888889999999999988766
No 156
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=97.93 E-value=6.4e-05 Score=67.78 Aligned_cols=114 Identities=13% Similarity=0.105 Sum_probs=90.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh-------hHH----HHHHHHHHHh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL-------NIY----MLIFGRVLLG 154 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~-------~~~----~l~v~r~l~G 154 (223)
.+++.+.+.+.....+...+..+++|+++||+|.++++......++++..+..+.. +.. .++...+..|
T Consensus 250 g~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G 329 (417)
T COG2223 250 GLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAG 329 (417)
T ss_pred CCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhc
Confidence 57888889999999999999999999999999999999999988888877666553 222 2334455667
Q ss_pred hhhhhhhhhhhhcccccccccccccchhhhcccCccchhhhhhhccC
Q 027462 155 VGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 155 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
+|.|..+.. ++.++++.-...-+++++.-++|....|....+...
T Consensus 330 ~GnGsvfk~--Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~ 374 (417)
T COG2223 330 LGNGSVFKM--IPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLD 374 (417)
T ss_pred cCcchheee--chHHHHhhhhHHHHHHHHhccccccchhHHHHHHHH
Confidence 777665554 888888888888899999999999888877666544
No 157
>TIGR00898 2A0119 cation transport protein.
Probab=97.90 E-value=9.6e-05 Score=67.92 Aligned_cols=102 Identities=12% Similarity=-0.030 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHhhhhhhhhhhhh--hccccc
Q 027462 96 TSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNI--YMLIFGRVLLGVGIGFTNQCRY--ISQKWH 171 (223)
Q Consensus 96 ~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~--~~l~v~r~l~G~g~g~~~~~~~--~~~~~~ 171 (223)
.....+...++.++.+++.||+|||+.+.++.++..++.++..+.++. ...++..++.+++.+...+..+ ..+.++
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 440 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP 440 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 334456777888999999999999999999988888777766665432 3334444555555555545432 556665
Q ss_pred cc-ccccccchhhhcccCccchhhhhh
Q 027462 172 HQ-NTEEHSPLASKYVLPLVSYPLIFS 197 (223)
Q Consensus 172 ~~-~~~~~~~~~~~~~~~~~~~~~~~~ 197 (223)
.+ |+.+.+..+....+|.+++|.+..
T Consensus 441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~ 467 (505)
T TIGR00898 441 TVVRNLGVGVCSTMARVGSIISPFLVY 467 (505)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence 54 788888888887888888877655
No 158
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=97.90 E-value=5.9e-05 Score=69.43 Aligned_cols=115 Identities=13% Similarity=0.157 Sum_probs=93.4
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhh-chhHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHhhhhhhhh
Q 027462 85 CKFDSQLLAAFTSSLYISGLIASLFASTVTRAF-GRKASILVGGTAFLAGSAIGGAAL--NIYMLIFGRVLLGVGIGFTN 161 (223)
Q Consensus 85 ~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~-Grk~~~~~~~l~~~~~~l~~~~a~--~~~~l~v~r~l~G~g~g~~~ 161 (223)
.++++++..-+.+++..-.-..+.++|+++||+ |+|+.+.++.++..+|.++.+.+. +...++++-++.++|.|..=
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 567888888888888877777889999999995 999999999999999999999884 77888888888889999877
Q ss_pred hhhh--hcccc---cccccccccchhhhcccCccchhhhhhhc
Q 027462 162 QCRY--ISQKW---HHQNTEEHSPLASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 162 ~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
+... ..+.+ +.||...|+.+-.+=.+|+++.|.+..-+
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~ 178 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLL 178 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHH
Confidence 6543 56666 23588888888777778888888754433
No 159
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.87 E-value=0.00013 Score=67.42 Aligned_cols=103 Identities=13% Similarity=-0.074 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHhhhhhhhhhh--hhhcccc
Q 027462 97 SSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALN----IYMLIFGRVLLGVGIGFTNQC--RYISQKW 170 (223)
Q Consensus 97 s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~----~~~l~v~r~l~G~g~g~~~~~--~~~~~~~ 170 (223)
....++..++.++.+++.||+|||+.++++..+..++.++.++..+ ...++..-+...+......+. .+.++.+
T Consensus 342 ~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~ 421 (502)
T TIGR00887 342 IIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF 421 (502)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence 3444566778899999999999999998888777766555544321 111111111111111111122 1134445
Q ss_pred ccc-ccccccchhhhcccCccchhhhhhhc
Q 027462 171 HHQ-NTEEHSPLASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 171 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
..+ |+++.+.......++.+++|.+..-+
T Consensus 422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l 451 (502)
T TIGR00887 422 PTRYRSTAHGISAASGKAGAIIGQFGFLYL 451 (502)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHhhhh
Confidence 444 66666666666666666555544433
No 160
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=97.86 E-value=0.00041 Score=62.30 Aligned_cols=114 Identities=9% Similarity=-0.132 Sum_probs=79.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhHHhHH-hhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462 88 DSQLLAAFTSSLYISGLIASLFASTVT-RAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY- 165 (223)
Q Consensus 88 s~~~~~~~~s~~~lg~~~~~~~~g~l~-dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~- 165 (223)
++.+.+++.+...++........+++. ||++.++.+..+..+..++.++.+.++++..+++..++.+++.+...+...
T Consensus 241 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~ 320 (400)
T PRK11646 241 SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARET 320 (400)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHH
Confidence 567778887777776665555555555 457767777778777777777777777777777777778887776655432
Q ss_pred -hcccccc-cccccccchhhhcccCccchhhhhhhccC
Q 027462 166 -ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 166 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
..+..++ +|+++++..+..+.+|..++|.+...+..
T Consensus 321 ~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~ 358 (400)
T PRK11646 321 LSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFD 358 (400)
T ss_pred HHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHH
Confidence 4444443 48888888888888888878776666554
No 161
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=97.85 E-value=8.7e-05 Score=65.88 Aligned_cols=112 Identities=13% Similarity=0.054 Sum_probs=69.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY 165 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~ 165 (223)
++++.+.+.+.+...++..++.++.+++.||+|||+.+.++.++..++.+...+.++....+..-.+.+.|.+...+...
T Consensus 235 g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 314 (392)
T PRK10473 235 GFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGVAM 314 (392)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 35788889999999999999999999999999999999999888888777766665444333333343333333332222
Q ss_pred hcccc--cccccccccchhhhcccCccchhhhhh
Q 027462 166 ISQKW--HHQNTEEHSPLASKYVLPLVSYPLIFS 197 (223)
Q Consensus 166 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (223)
..... ++|.+.+.+..+....+|..+++.+..
T Consensus 315 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~ 348 (392)
T PRK10473 315 SQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAA 348 (392)
T ss_pred HHHhccCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 223444444444444455554444433
No 162
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=97.84 E-value=0.00012 Score=51.97 Aligned_cols=78 Identities=13% Similarity=0.073 Sum_probs=64.5
Q ss_pred hhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHH
Q 027462 48 GFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGG 127 (223)
Q Consensus 48 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~ 127 (223)
|+....+.++ +|..+++.. +|.++.+|+.+.+.+|+++|.+...++.++..+++.+..+.
T Consensus 5 GigRFayTpl--LP~M~~~~~------------------ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l 64 (85)
T PF06779_consen 5 GIGRFAYTPL--LPLMQADGG------------------LSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGL 64 (85)
T ss_pred hhHHHHHHhH--hHHHHHhcC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4444445444 488887774 79999999999999999999999999999988888899999
Q ss_pred HHHHHHHHHHhhhhhHHH
Q 027462 128 TAFLAGSAIGGAALNIYM 145 (223)
Q Consensus 128 l~~~~~~l~~~~a~~~~~ 145 (223)
+...+..+.+++.++...
T Consensus 65 ~~~~~~~~~ma~~~~~~~ 82 (85)
T PF06779_consen 65 LLTVLSTAAMALTHSFWL 82 (85)
T ss_pred HHHHHHHHHHHHHhchHH
Confidence 988888888888876543
No 163
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=97.83 E-value=0.00033 Score=62.73 Aligned_cols=77 Identities=10% Similarity=-0.102 Sum_probs=59.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~ 163 (223)
+.++.+.+++.+...++..+++++.+++.||.++|+.+..+.+ ..+..+..++.+++..+.+..++.|++.+...+.
T Consensus 237 g~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~ 313 (393)
T PRK11195 237 GITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVVP 313 (393)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhh
Confidence 4688999999999999999999999999999999888777753 3333444455566666666777888888776654
No 164
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=97.83 E-value=7.2e-05 Score=67.48 Aligned_cols=115 Identities=8% Similarity=0.041 Sum_probs=69.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKAS-ILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY 165 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~-~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~ 165 (223)
.++.+.+.+.....++..++.++.|++.||++||+. ..+..++..++.++.....+.......-.+.++|.....+..+
T Consensus 276 ~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 355 (412)
T TIGR02332 276 SSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFW 355 (412)
T ss_pred CcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHH
Confidence 467888889999999999999999999999997764 3333333333322221122212111111222233222222211
Q ss_pred --hcccccc-cccccccchhhhcccCccchhhhhhhccC
Q 027462 166 --ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 166 --~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
..+.+.. +|+++++.......+|.+++|.+..-+.+
T Consensus 356 ~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~ 394 (412)
T TIGR02332 356 TTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKD 394 (412)
T ss_pred hhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccc
Confidence 2233433 48899999999999999999886655544
No 165
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=97.82 E-value=0.00046 Score=61.51 Aligned_cols=108 Identities=16% Similarity=0.158 Sum_probs=89.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY 165 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~ 165 (223)
+.+.+..+.+++...+...+.+++..++..|+|.++.+..+.++..++.++=... +.+.++.+.++.|.|.+......+
T Consensus 43 gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLP 121 (395)
T COG2807 43 GLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLP 121 (395)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhh
Confidence 4799999999999999999999999999999999999999999999998887777 778899999999999988888754
Q ss_pred --hcccccccccccccchhhhcccCccchhh
Q 027462 166 --ISQKWHHQNTEEHSPLASKYVLPLVSYPL 194 (223)
Q Consensus 166 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (223)
+-.++.+|-....+.|+..-.+++-+++.
T Consensus 122 slIK~~Fpk~~~~mtglYs~sl~~~aaLaa~ 152 (395)
T COG2807 122 SLIKRDFPKRVGLMTGLYSTSLGAGAALAAA 152 (395)
T ss_pred HHHHhhcccchhhHHhHHHHHHHHHHHHHhh
Confidence 66677777666666666655555444443
No 166
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=97.81 E-value=0.00018 Score=66.34 Aligned_cols=111 Identities=12% Similarity=0.002 Sum_probs=68.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhH-------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKA-------SILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIG 158 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~-------~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g 158 (223)
+++..+.+.+.+...++..++.++.|+++||+|||+ ...+..++..+..++.....+....++..++.+++.+
T Consensus 284 g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 363 (476)
T PLN00028 284 GLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQ 363 (476)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 368889999999999999999999999999998752 2222222222223333444454444444455555443
Q ss_pred hhhhhhh--hcccccccccccccchhhhcccCccchhhhh
Q 027462 159 FTNQCRY--ISQKWHHQNTEEHSPLASKYVLPLVSYPLIF 196 (223)
Q Consensus 159 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (223)
......+ .+...++.++...++......+|.++.|.+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~ 403 (476)
T PLN00028 364 AACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLF 403 (476)
T ss_pred HhhhhhcccCcccChhhchhhhhhhhccccHHHHHHHHHH
Confidence 3333221 2333334478888888777667777776543
No 167
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.81 E-value=0.00025 Score=64.60 Aligned_cols=113 Identities=12% Similarity=-0.108 Sum_probs=60.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhh--chhHHHH-HHHHHHHHHHHHHhh--hhhHHHHHHHHHHHhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAF--GRKASIL-VGGTAFLAGSAIGGA--ALNIYMLIFGRVLLGVGIGFTN 161 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~--Grk~~~~-~~~l~~~~~~l~~~~--a~~~~~l~v~r~l~G~g~g~~~ 161 (223)
++..+.+++.....++..++.++.|++.||+ +||.... ....+..++.++..+ ..+....++..++.|.+.....
T Consensus 286 ~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 365 (452)
T PRK11273 286 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPV 365 (452)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHH
Confidence 5778888888888899999999999999999 5554322 222222232222222 2233334444444444332222
Q ss_pred hhh--hhcccccc-cccccccchhhhcccCc-cchhhhhhhc
Q 027462 162 QCR--YISQKWHH-QNTEEHSPLASKYVLPL-VSYPLIFSIT 199 (223)
Q Consensus 162 ~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 199 (223)
... ...+..++ +|+++.+..+....+|. +++|.+....
T Consensus 366 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l 407 (452)
T PRK11273 366 MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT 407 (452)
T ss_pred HHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 111 12333433 36777777665544443 3345544443
No 168
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=97.81 E-value=8.8e-05 Score=67.10 Aligned_cols=116 Identities=12% Similarity=0.106 Sum_probs=83.9
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 027462 84 YCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 84 ~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~ 163 (223)
+++++.++...+.-...+.+++++++.|++.||+|.|+++.++.++..+..+..-+...-..+.+.-.+.|...|.....
T Consensus 282 ~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~ 361 (438)
T COG2270 282 DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQAS 361 (438)
T ss_pred HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHH
Confidence 34689999999999999999999999999999999999999999888877665555544455556667778878777665
Q ss_pred h--hhcccc-cccccccccchhhhcccCccchhhhhhhc
Q 027462 164 R--YISQKW-HHQNTEEHSPLASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 164 ~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
. +..+.- ++|+++.|++++..-=.+...+|..++-.
T Consensus 362 SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~ 400 (438)
T COG2270 362 SRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVI 400 (438)
T ss_pred HHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHH
Confidence 1 122222 33566777766665555555566554443
No 169
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=97.76 E-value=0.00046 Score=62.74 Aligned_cols=112 Identities=12% Similarity=0.120 Sum_probs=85.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh--h
Q 027462 88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR--Y 165 (223)
Q Consensus 88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~--~ 165 (223)
++...|.+.+...+.-++...+..++.+|+|.|+.++++..++++-.+.++++++.+.+.+.+.+.|+-.+...... |
T Consensus 257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkY 336 (412)
T PF01306_consen 257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKY 336 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678999999999999999999999999999999999999999999999999999999999999998777766653 4
Q ss_pred hccccccc-ccccccch-hhhcccCccchhhhhhhc
Q 027462 166 ISQKWHHQ-NTEEHSPL-ASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 166 ~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~ 199 (223)
+..++++| ..+.+.+. +...++|..+.+.....+
T Consensus 337 I~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~l 372 (412)
T PF01306_consen 337 ITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYL 372 (412)
T ss_dssp HHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 77777777 44555553 344445555555444433
No 170
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.76 E-value=0.00025 Score=65.78 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=80.6
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchh--HHHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHh
Q 027462 85 CKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRK--ASILVGGTAFLAGSAIGGA--------ALNIYMLIFGRVLLG 154 (223)
Q Consensus 85 ~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk--~~~~~~~l~~~~~~l~~~~--------a~~~~~l~v~r~l~G 154 (223)
++++.++...+.-...+.+++|+++.|++.||+|.| ++++++..+..+..+...+ .++-+.+.+.-++.|
T Consensus 312 lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G 391 (477)
T PF11700_consen 312 LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIG 391 (477)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHH
Confidence 358999999999999999999999999999999999 8888777777544443333 345566777788899
Q ss_pred hhhhhhhhhh-h-hcccc-cccccccccchhhhcccCccchhhhhhh
Q 027462 155 VGIGFTNQCR-Y-ISQKW-HHQNTEEHSPLASKYVLPLVSYPLIFSI 198 (223)
Q Consensus 155 ~g~g~~~~~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (223)
+..|...+.. . .++.- ++|+++.|+++...-=..+.++|++.+-
T Consensus 392 ~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~ 438 (477)
T PF11700_consen 392 LFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGL 438 (477)
T ss_pred HHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887761 1 22222 3456666666665555555555554433
No 171
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=97.74 E-value=0.0001 Score=66.06 Aligned_cols=94 Identities=13% Similarity=0.110 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHhhhhhhhhhhh--hhcccccc
Q 027462 99 LYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNI----YMLIFGRVLLGVGIGFTNQCR--YISQKWHH 172 (223)
Q Consensus 99 ~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~----~~l~v~r~l~G~g~g~~~~~~--~~~~~~~~ 172 (223)
..+.-+-|.++.+++.||+|||+.+..+.++++++.++...+.+- .+++++|++... .+.+. |.+.-++.
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg----~fqvaYvYtPEVyPT 465 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISG----AFQVAYVYTPEVYPT 465 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhc----hheEEEEecCcccch
Confidence 345566788899999999999999999999999988877776432 344566665532 33442 25555555
Q ss_pred c-ccccccchhhhcccCccchhhhh
Q 027462 173 Q-NTEEHSPLASKYVLPLVSYPLIF 196 (223)
Q Consensus 173 ~-~~~~~~~~~~~~~~~~~~~~~~~ 196 (223)
. |....+.-++-.=+|+++.|.+.
T Consensus 466 avRatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 466 AVRATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred hhhhcchhhhhhHHhhhhhhhhHHH
Confidence 4 66666655555556666666544
No 172
>PRK10133 L-fucose transporter; Provisional
Probab=97.73 E-value=0.00024 Score=64.81 Aligned_cols=113 Identities=7% Similarity=0.008 Sum_probs=79.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY 165 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~ 165 (223)
++++.+.++....+.++..++.++.+++.||+|+|+++..+.++..+..++..+.++. ..++.-++.|+|.+...+...
T Consensus 291 g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~i~P~~~ 369 (438)
T PRK10133 291 GMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-VGLIALTLCSAFMSIQYPTIF 369 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999888877776665555554443 224456678899998888754
Q ss_pred --hcccccccccccccchhhhcccCccchhhhhhhcc
Q 027462 166 --ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITA 200 (223)
Q Consensus 166 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
.-+...++...+-++.... .+|..+.|.+...+.
T Consensus 370 s~a~~~~~~~~~~as~l~~~~-~~g~~~~~~i~G~l~ 405 (438)
T PRK10133 370 SLGIKNLGQDTKYGSSFIVMT-IIGGGIVTPVMGFVS 405 (438)
T ss_pred HHHHcccchhhccchhHHhHH-hccchHHHHHHHHHH
Confidence 2222333344555555433 345555665555443
No 173
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=97.72 E-value=0.00014 Score=59.53 Aligned_cols=105 Identities=24% Similarity=0.317 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHhhhhhhhhhhhh--
Q 027462 90 QLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALN--IYMLIFGRVLLGVGIGFTNQCRY-- 165 (223)
Q Consensus 90 ~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~--~~~l~v~r~l~G~g~g~~~~~~~-- 165 (223)
...++..+...++..++.++.|.+.||+|||+.+..+......+.++.++..+ ...+++.|++.|++.+...+...
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 118 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL 118 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 47889999999999999999999999999998888887765555566666655 88889999999988886666532
Q ss_pred hcccccc--cccccccchhh-hcccCccchhh
Q 027462 166 ISQKWHH--QNTEEHSPLAS-KYVLPLVSYPL 194 (223)
Q Consensus 166 ~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~ 194 (223)
.++..++ +|....+.... ...+|.+++|.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (338)
T COG0477 119 LSEWFPEATERGLAVGLVTLGAGALGLALGPL 150 (338)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444442 46666666666 35566666653
No 174
>PRK10091 MFS transport protein AraJ; Provisional
Probab=97.72 E-value=0.00015 Score=64.47 Aligned_cols=116 Identities=5% Similarity=-0.112 Sum_probs=75.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA-ALNIYMLIFGRVLLGVGIGFTNQCR 164 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~-a~~~~~l~v~r~l~G~g~g~~~~~~ 164 (223)
++++.+.+++.+...++..++.++.+++.||+|+|+.+..+..+..++.++... .++.+..++..++.+++.....+..
T Consensus 231 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 310 (382)
T PRK10091 231 GFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPL 310 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHH
Confidence 368889999999999999999999999999999999988888877777655443 3444445555556665544333221
Q ss_pred h--hcccccccccccccchhhhcccCccchhhhhhhccC
Q 027462 165 Y--ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 165 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
. ..+...++|....+.....+.+|..++|.+..-+..
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Gp~~~G~l~~ 349 (382)
T PRK10091 311 QILLLQNAKGGELLGAAGGQIAFNLGSAIGAYCGGMMLT 349 (382)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 1 112222222222223355667888888876655443
No 175
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=97.67 E-value=0.00068 Score=61.48 Aligned_cols=102 Identities=17% Similarity=0.086 Sum_probs=73.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhh--chhHHHHHHHHHH-HHHHHHHhhhh--hHHHHHHHHHHHhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAF--GRKASILVGGTAF-LAGSAIGGAAL--NIYMLIFGRVLLGVGIGFT 160 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~--Grk~~~~~~~l~~-~~~~l~~~~a~--~~~~l~v~r~l~G~g~g~~ 160 (223)
+++....++..+.+=.+.+.|++++|+++||+ |||.+..+.+.+. .++.+..-+++ ++.+..+.-++.|+-.-+.
T Consensus 284 ~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGP 363 (448)
T COG2271 284 GFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGP 363 (448)
T ss_pred CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhH
Confidence 68999999999999999999999999999996 6775544433333 33333334444 4466667777788776665
Q ss_pred hhhhhhcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhh
Q 027462 161 NQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQ 215 (223)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~ 215 (223)
.-. ..+...|..|++--|.++|+.++.
T Consensus 364 qmL----------------------------iGl~a~e~~pK~AaGtA~Gf~Glf 390 (448)
T COG2271 364 QML----------------------------IGLAAAEFVPKKAAGTATGFVGLF 390 (448)
T ss_pred HHH----------------------------HHHHHhccccHhhccchhchhhhH
Confidence 554 566778888888888888776544
No 176
>PRK10054 putative transporter; Provisional
Probab=97.64 E-value=0.00018 Score=64.56 Aligned_cols=113 Identities=12% Similarity=0.006 Sum_probs=75.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462 88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA-LNIYMLIFGRVLLGVGIGFTNQCRY- 165 (223)
Q Consensus 88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a-~~~~~l~v~r~l~G~g~g~~~~~~~- 165 (223)
+....+++.+...+......+..|++.||+++|+.+..+..+..++.+...++ ++.+.+.+...+.|+|.+...+...
T Consensus 242 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~ 321 (395)
T PRK10054 242 AEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYM 321 (395)
T ss_pred HHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 56667777777777777778889999999999999988888887777666654 5666666777888888776555532
Q ss_pred -hccccc-ccccccccchhhhcccCccchhhhhhhccC
Q 027462 166 -ISQKWH-HQNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 166 -~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
..+.-+ ++++++++..+. ..+|..++|.+...+.+
T Consensus 322 ~~~~~~p~~~~~~~~~~~~~-~~~G~~~Gp~~~G~l~~ 358 (395)
T PRK10054 322 LIDHIAPPGMKASYFSAQSL-GWLGAAINPLVSGVILT 358 (395)
T ss_pred HHHHhCCcccceehHhHHHH-HHHHHHHHHHHHHHHHH
Confidence 222222 235666664442 22556666665544433
No 177
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.63 E-value=0.0012 Score=61.19 Aligned_cols=114 Identities=10% Similarity=0.065 Sum_probs=71.5
Q ss_pred CCChhHHHHHHH-HHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHH---hhh-hhHHHHHHHHHH----Hhhh
Q 027462 86 KFDSQLLAAFTS-SLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIG---GAA-LNIYMLIFGRVL----LGVG 156 (223)
Q Consensus 86 ~~s~~~~~~~~s-~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~---~~a-~~~~~l~v~r~l----~G~g 156 (223)
+++.++.+++.. ...++.+++.++.|++.||+|+|+.+.++.++..+..+.. +.. ++...+.+.-++ .|++
T Consensus 254 G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~ 333 (491)
T PRK11010 254 GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMG 333 (491)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 478999999874 5568999999999999999999888776666555443322 222 333333333344 3333
Q ss_pred hhhhhhhhhhcccccc-cccccccchhhhcccCccchhhhhhhccC
Q 027462 157 IGFTNQCRYISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 157 ~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
.+..... .....++ .+.+.++.+++...+|.++.+.+...+..
T Consensus 334 ~~~~~a~--~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~ 377 (491)
T PRK11010 334 TAAFVAL--LMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE 377 (491)
T ss_pred HHHHHHH--HHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332221 2333333 36778888888888887766655544443
No 178
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=97.62 E-value=0.00092 Score=61.64 Aligned_cols=77 Identities=6% Similarity=-0.001 Sum_probs=54.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhc-----hhHHHHHHHHHHH-HHHHHHhhhhhHHHH-HHHHHHHhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFG-----RKASILVGGTAFL-AGSAIGGAALNIYML-IFGRVLLGVGIG 158 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~G-----rk~~~~~~~l~~~-~~~l~~~~a~~~~~l-~v~r~l~G~g~g 158 (223)
+++.++++.+.+...+...+-.+ +|++.||++ ||+.++++.++.. +.....+..++.... .+..++.+++.+
T Consensus 57 g~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a 135 (468)
T TIGR00788 57 GLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKA 135 (468)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 47999999999999999998666 999999998 7777777776653 333333333443333 346778888777
Q ss_pred hhhhh
Q 027462 159 FTNQC 163 (223)
Q Consensus 159 ~~~~~ 163 (223)
....+
T Consensus 136 ~~dv~ 140 (468)
T TIGR00788 136 LYDVL 140 (468)
T ss_pred HHHHh
Confidence 76654
No 179
>PRK09848 glucuronide transporter; Provisional
Probab=97.61 E-value=0.00049 Score=62.49 Aligned_cols=114 Identities=9% Similarity=0.028 Sum_probs=77.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462 88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA--LNIYMLIFGRVLLGVGIGFTNQCRY 165 (223)
Q Consensus 88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a--~~~~~l~v~r~l~G~g~g~~~~~~~ 165 (223)
+....++......++.+++.++.+++.||+|+|+.+.++.++..++.+...+. .+.+.+++..++.|+|.+...+...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~ 341 (448)
T PRK09848 262 TGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMW 341 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444567788899999999999999999999998888777666554 3555666667788888877766532
Q ss_pred --hc-----cccc---ccccccccchhhhcccCccchhhhhhhccC
Q 027462 166 --IS-----QKWH---HQNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 166 --~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
.. +.++ ++++..++..+...-+|..+++.+..-++.
T Consensus 342 al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 342 ALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred HHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1221 125666777777777777777776665543
No 180
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.60 E-value=0.0017 Score=56.92 Aligned_cols=110 Identities=11% Similarity=0.078 Sum_probs=68.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh---h-hhHHHHHHHHHHHhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA---A-LNIYMLIFGRVLLGVGIGFTN 161 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~---a-~~~~~l~v~r~l~G~g~g~~~ 161 (223)
++++++.+++.+...++..++.++.+++.||+|||+.+.++.++..+..+.... . .+...+.+.-.+.+.+.+...
T Consensus 226 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (377)
T PRK11102 226 GVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMIS 305 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 368899999999999999999999999999999999988888765443322221 1 223333333333333333222
Q ss_pred hhh--hhcccccccccccccchhhh-cccCccchhhh
Q 027462 162 QCR--YISQKWHHQNTEEHSPLASK-YVLPLVSYPLI 195 (223)
Q Consensus 162 ~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 195 (223)
... ...+..++.++++.+..... +++|..+++..
T Consensus 306 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 306 SNAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 211 14444455566677665543 45666666654
No 181
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=97.59 E-value=0.0013 Score=58.37 Aligned_cols=115 Identities=12% Similarity=-0.022 Sum_probs=76.2
Q ss_pred CChhHHHHHHHHHH-HHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHhhhhhh
Q 027462 87 FDSQLLAAFTSSLY-ISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA------ALNIYMLIFGRVLLGVGIGF 159 (223)
Q Consensus 87 ~s~~~~~~~~s~~~-lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~------a~~~~~l~v~r~l~G~g~g~ 159 (223)
+++++.+++..... ....++.++.|++.||+|+|+.+..+.++..+..+.... .++...++....+.+++.|.
T Consensus 240 ~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 319 (390)
T TIGR02718 240 WPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGI 319 (390)
T ss_pred CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHH
Confidence 68999999888775 577788899999999999999988777665333222211 12223333444455555555
Q ss_pred hhhhhh--hcccc-c-ccccccccchhhhcccCccchhhhhhhccC
Q 027462 160 TNQCRY--ISQKW-H-HQNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 160 ~~~~~~--~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
..+... ..+.. + +.+.+.++..++...+|..++|.+...+.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~ 365 (390)
T TIGR02718 320 TSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD 365 (390)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544332 22333 2 347889999999999999999887665543
No 182
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=97.59 E-value=0.00077 Score=60.18 Aligned_cols=90 Identities=13% Similarity=-0.010 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHhhhchh---HHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhc
Q 027462 92 LAAFTSSLYISGLIASLFASTVTRAFGRK---ASILV-GGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYIS 167 (223)
Q Consensus 92 ~~~~~s~~~lg~~~~~~~~g~l~dr~Grk---~~~~~-~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~~~ 167 (223)
.+...+...+... +..+++.||.+|| +.... ..++..+..++.++..+....++.-.+.|++.....+.
T Consensus 228 ~~~~~~l~~~~g~---~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 300 (368)
T TIGR00903 228 AGDAVALAILAGL---IGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAI---- 300 (368)
T ss_pred HHHHHHHHHHHHH---HHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHH----
Confidence 4444444444333 4457777777653 33222 33333333333333333333344445556656555555
Q ss_pred ccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccch
Q 027462 168 QKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGES 212 (223)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~ 212 (223)
...+..|.+|++.||+++|+.
T Consensus 301 ------------------------~~~~~~~~~p~~~rgt~~G~~ 321 (368)
T TIGR00903 301 ------------------------IMDWIGKFCDKELHGKAAGAI 321 (368)
T ss_pred ------------------------HHHHHHHhcchhhcCcccchh
Confidence 445667777777777777654
No 183
>PRK10429 melibiose:sodium symporter; Provisional
Probab=97.59 E-value=0.00078 Score=61.88 Aligned_cols=113 Identities=9% Similarity=0.092 Sum_probs=72.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHhhhhhhhhh
Q 027462 88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA-----ALNIYMLIFGRVLLGVGIGFTNQ 162 (223)
Q Consensus 88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~-----a~~~~~l~v~r~l~G~g~g~~~~ 162 (223)
+....+++.+...++.+++.++.+++.||+|+|+.+.++.++..++.+...+ ..+...+++.-++.|++.+....
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777888999999999999999999998888776655544322 23455566666777777777665
Q ss_pred hhh--hccc-----cc-cc--ccccccchhhhcccCccchhhhhhhcc
Q 027462 163 CRY--ISQK-----WH-HQ--NTEEHSPLASKYVLPLVSYPLIFSITA 200 (223)
Q Consensus 163 ~~~--~~~~-----~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
... .++. |+ ++ ++..++..+...-+|..+++.+..-++
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l 391 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL 391 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 421 2221 31 12 344455555555566666666666554
No 184
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.55 E-value=0.00066 Score=61.86 Aligned_cols=117 Identities=9% Similarity=-0.056 Sum_probs=67.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHH--------HHHHHHHHHHHHH--Hhh-hhhHHHHHHHHHHHh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASI--------LVGGTAFLAGSAI--GGA-ALNIYMLIFGRVLLG 154 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~--------~~~~l~~~~~~l~--~~~-a~~~~~l~v~r~l~G 154 (223)
+++..+.+++.+...++..++.++.|++.||+++|+.. ..+......+... ... ..+....++.-.+.+
T Consensus 293 g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 372 (465)
T TIGR00894 293 RVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLAN 372 (465)
T ss_pred CcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 36888999999999999999999999999998754211 1111111111111 111 122223333333444
Q ss_pred hhhhhhhhhhh-hccc-ccccccccccchhhhcccCccchhhhhhhccCC
Q 027462 155 VGIGFTNQCRY-ISQK-WHHQNTEEHSPLASKYVLPLVSYPLIFSITAPK 202 (223)
Q Consensus 155 ~g~g~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 202 (223)
.+.+...+... ..+. .++.++.+.+..+....+|.++.|.+...+.+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~ 422 (465)
T TIGR00894 373 AVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQ 422 (465)
T ss_pred HHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCC
Confidence 44333322211 2222 333478888888888888888888777665543
No 185
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=97.54 E-value=0.00087 Score=61.91 Aligned_cols=102 Identities=17% Similarity=0.077 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh------hhHHHHHHH----HHHHhhhhhhhhhhhh
Q 027462 96 TSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA------LNIYMLIFG----RVLLGVGIGFTNQCRY 165 (223)
Q Consensus 96 ~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a------~~~~~l~v~----r~l~G~g~g~~~~~~~ 165 (223)
.....+...+..+++|+++||+|+|+++.++.+...+..+...+. .++..+++. -+..|+|.|..+..
T Consensus 292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~-- 369 (462)
T PRK15034 292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQM-- 369 (462)
T ss_pred HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHh--
Confidence 444557788888999999999999999998888777665432221 133333332 34446666666544
Q ss_pred hcccccc----------------------cccccccchhhhcccCccchhhhhhhc
Q 027462 166 ISQKWHH----------------------QNTEEHSPLASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 166 ~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
+++.+++ +-+-+.+++++.-++|..+.|......
T Consensus 370 ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~ 425 (462)
T PRK15034 370 IAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMS 425 (462)
T ss_pred hHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHH
Confidence 3444431 122445666777778888788655444
No 186
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=97.54 E-value=0.00054 Score=62.09 Aligned_cols=113 Identities=13% Similarity=0.110 Sum_probs=81.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh-hhHHHHHH----HHHHHhhhhhhhhh
Q 027462 88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA-LNIYMLIF----GRVLLGVGIGFTNQ 162 (223)
Q Consensus 88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a-~~~~~l~v----~r~l~G~g~g~~~~ 162 (223)
+....+.+.+...+.-++.-.+.+++..|+|.|+++.++.+...+-..+.+.. ++.+...+ ...+.|+..+....
T Consensus 241 ~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~ 320 (400)
T PF03825_consen 241 SGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHA 320 (400)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHH
Confidence 45666766677777788888899999999999999999999999988888877 45444333 34568888777766
Q ss_pred hh--hhccccccc-ccccccchhhh-cccCccchhhhhhhcc
Q 027462 163 CR--YISQKWHHQ-NTEEHSPLASK-YVLPLVSYPLIFSITA 200 (223)
Q Consensus 163 ~~--~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 200 (223)
+. +++...+++ |.++|+.+++. .++|..++..+..-+.
T Consensus 321 a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~ 362 (400)
T PF03825_consen 321 ASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLY 362 (400)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 53 366666554 78888887765 4577776665544443
No 187
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=97.54 E-value=0.00084 Score=60.64 Aligned_cols=77 Identities=12% Similarity=0.088 Sum_probs=59.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL-NIYMLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~-~~~~l~v~r~l~G~g~g~~~~~ 163 (223)
+++.+.++++.-.+.++..+|..+.|++.|| +.|+.+....++..+..+...+.. +....++.-++.|+..+...+.
T Consensus 243 g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~ 320 (394)
T COG2814 243 GFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQG 320 (394)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhH
Confidence 5799999999999999999999999999999 888888888777777766655554 4444455555666665554444
No 188
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.52 E-value=0.00099 Score=60.41 Aligned_cols=35 Identities=9% Similarity=-0.006 Sum_probs=30.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRK 120 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk 120 (223)
++++.+.++......++..++.++.|++.||++++
T Consensus 283 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~ 317 (438)
T TIGR00712 283 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKG 317 (438)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 35788889999999999999999999999999654
No 189
>PRK11043 putative transporter; Provisional
Probab=97.52 E-value=0.0013 Score=58.53 Aligned_cols=115 Identities=7% Similarity=-0.037 Sum_probs=76.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHH---hh--hhhHHHHHHHHHHHhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIG---GA--ALNIYMLIFGRVLLGVGIGFTN 161 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~---~~--a~~~~~l~v~r~l~G~g~g~~~ 161 (223)
+++.+.++......++..++.++.+++.||+|+|+.+....++..++.+.. .. .++...+++...+.|++.+...
T Consensus 235 ~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (401)
T PRK11043 235 YSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIY 314 (401)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHH
Confidence 688888888888888899999999999999999887655555444433221 11 2344444455566777777766
Q ss_pred hhhh--hcccccccccccccchhhhcccCccchhhhhhhccC
Q 027462 162 QCRY--ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 162 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
+... ..+..++.++++.+.++.....+..+++.+...+..
T Consensus 315 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 315 PIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred HHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 6532 223344558888888887766666666666665544
No 190
>PRK11663 regulatory protein UhpC; Provisional
Probab=97.52 E-value=0.0013 Score=59.65 Aligned_cols=114 Identities=11% Similarity=-0.062 Sum_probs=62.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhh--chh-HHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAF--GRK-ASILVGG---TAFLAGSAIGGAALNIYMLIFGRVLLGVGIGF 159 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~--Grk-~~~~~~~---l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~ 159 (223)
+++..+.+...+...++..++.++.|++.||+ ++| ....... ++..+..+... ..+...+.+..+..|++...
T Consensus 275 g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~ 353 (434)
T PRK11663 275 GVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP-FASYVMQAACFFTIGFFVFG 353 (434)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHHHhh
Confidence 46888999999999999999999999999999 333 3222211 11111111111 12222333333333433221
Q ss_pred hhhh--hhhcccccc-cccccccchhhhcccCccchhhhhhhcc
Q 027462 160 TNQC--RYISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITA 200 (223)
Q Consensus 160 ~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
.... ...++.+++ +|+++.++.+...-+|..++|....-+.
T Consensus 354 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~ 397 (434)
T PRK11663 354 PQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVL 397 (434)
T ss_pred HHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 1111 113344433 4777777777777677776666554443
No 191
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=97.51 E-value=0.0011 Score=60.03 Aligned_cols=106 Identities=8% Similarity=0.053 Sum_probs=72.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhc-hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFG-RKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY 165 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~G-rk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~ 165 (223)
++.+++|.+.+...+..++.+++.|.++||++ +|+.+.++.++..+..+.....++++.+++..++..+......+...
T Consensus 34 ~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~d 113 (400)
T PF03825_consen 34 FSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSD 113 (400)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHH
Confidence 79999999999999999999999999999986 46777777777666666666667777777766666665544444321
Q ss_pred -hcccccccccccccchhhhcccCccch
Q 027462 166 -ISQKWHHQNTEEHSPLASKYVLPLVSY 192 (223)
Q Consensus 166 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (223)
+..+..+++..-++-.+.--++|.+++
T Consensus 114 si~~~~~~~~~~~YG~iRlwGSiGf~~~ 141 (400)
T PF03825_consen 114 SIALSYLGDRGKDYGRIRLWGSIGFIVA 141 (400)
T ss_pred HHHHHHcccccCCCCcchhhhhHHHHHH
Confidence 222333334444555444444555443
No 192
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=97.46 E-value=0.0007 Score=58.94 Aligned_cols=114 Identities=14% Similarity=0.080 Sum_probs=72.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHH-HHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFL-AGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR 164 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~-~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~ 164 (223)
++|+...+.+.+.....+++.+++.|.+.|++|++...+.+..+.. .+.....+.. ..=.+...+.|+..+.. ++.
T Consensus 296 GlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~--lsPy~~m~~lGLsysll-Acs 372 (459)
T KOG4686|consen 296 GLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF--LSPYTSMTFLGLSYSLL-ACS 372 (459)
T ss_pred CCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh--ccHHHHHHHHhhhHHHH-HHH
Confidence 3799999999999999999999999999999999866655544443 3333333321 11123344555544332 211
Q ss_pred h----hcccccccccccccchhhhcccCccchhhhhhhccCC
Q 027462 165 Y----ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPK 202 (223)
Q Consensus 165 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 202 (223)
. .+.--.++-++++++..++--+|.-+.|.+..-+.+.
T Consensus 373 lWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~ 414 (459)
T KOG4686|consen 373 LWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADG 414 (459)
T ss_pred HhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecC
Confidence 0 1112234567788888888888888777777666653
No 193
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=97.44 E-value=0.0035 Score=56.19 Aligned_cols=114 Identities=11% Similarity=0.006 Sum_probs=73.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHH-HHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFL-AGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY 165 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~-~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~ 165 (223)
++..+.+.+.+...++..++.++.+++.||.+ |+.++.+.++.. +..++....++...+.+..++.|++.+...+...
T Consensus 249 ~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~ 327 (394)
T PRK10213 249 FGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWS 327 (394)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHH
Confidence 68888999999999999999999999999965 444444444433 3334444555666666777888888776655422
Q ss_pred --hcccccccccccccchhhhcccCccchhhhhhhccC
Q 027462 166 --ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 166 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
....-.+++.+..+.....+.+|..++|.+...+.+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~ 365 (394)
T PRK10213 328 TWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALD 365 (394)
T ss_pred HHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222223333344455555666777777766665554
No 194
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.43 E-value=0.00068 Score=62.72 Aligned_cols=140 Identities=12% Similarity=0.098 Sum_probs=87.8
Q ss_pred ccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchh--------HH-HHHHH
Q 027462 57 VTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRK--------AS-ILVGG 127 (223)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk--------~~-~~~~~ 127 (223)
++.+|.|+++.+ +++-.+.|++.+...+...+..+++|.++||+-+| +. -.++.
T Consensus 278 ~~y~PtY~~~VL-----------------~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~ 340 (466)
T KOG2532|consen 278 LTYLPTYLKEVL-----------------GFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAF 340 (466)
T ss_pred HHHhhHHHHHHh-----------------CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHH
Confidence 566677777665 68999999999999999999999999999998541 11 11222
Q ss_pred HHHHHHHHHHhhhh---h---HHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhhhcccCccchhhhhhhccC
Q 027462 128 TAFLAGSAIGGAAL---N---IYMLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 128 l~~~~~~l~~~~a~---~---~~~l~v~r~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
....+..+..++.+ . ...+.+.-.+.|+..++.+.+ .-++.++-....++..+....++.++.|.++.-+.+
T Consensus 341 ~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~--~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~ 418 (466)
T KOG2532|consen 341 GGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKN--HQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT 418 (466)
T ss_pred HHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhh--hhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC
Confidence 22222223333332 2 112222233334433333332 222222236677777888888888899998888886
Q ss_pred CCCCcccccchhhhhhhhhc
Q 027462 202 KRSRGAGAGESPWQWLLLLH 221 (223)
Q Consensus 202 ~~~rg~~~~~~~~~~~~~l~ 221 (223)
+. ...+||+.|.++
T Consensus 419 -~~-----t~~eW~~VF~i~ 432 (466)
T KOG2532|consen 419 -DN-----TREEWRIVFLIA 432 (466)
T ss_pred -CC-----CHHHHHHHHHHH
Confidence 32 457999999876
No 195
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=97.36 E-value=0.0028 Score=58.91 Aligned_cols=99 Identities=22% Similarity=0.325 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhH-----------HHH---HHHHHHHhhhhh
Q 027462 93 AAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNI-----------YML---IFGRVLLGVGIG 158 (223)
Q Consensus 93 ~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~-----------~~l---~v~r~l~G~g~g 158 (223)
.+......+...++..+...+.||+|||+.++.+...+.++.++.+..... .++ .+.-++..+..|
T Consensus 332 ~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g 411 (513)
T KOG0254|consen 332 FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIG 411 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcc
Confidence 444555556667777777999999999999999999999988877754221 111 111112222222
Q ss_pred hhhhhhhhcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccch---hhhhhhhh
Q 027462 159 FTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGES---PWQWLLLL 220 (223)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~---~~~~~~~l 220 (223)
. .+. ...+.+|.+|.+.|+.+.++. +|-+.+.+
T Consensus 412 ~-g~v----------------------------~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v 447 (513)
T KOG0254|consen 412 W-GPV----------------------------PWVIVSEIFPLRLRSKGASLAVAVNWLWNFLI 447 (513)
T ss_pred c-ccc----------------------------hhhhhhccCcHhHHhhhHHHHHHHHHHHHHHH
Confidence 1 122 346889999999999998863 66665544
No 196
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=97.29 E-value=0.0023 Score=57.91 Aligned_cols=112 Identities=10% Similarity=-0.035 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh-hc
Q 027462 89 SQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY-IS 167 (223)
Q Consensus 89 ~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~-~~ 167 (223)
....+...+....+..++.++.+++.||+++|+.+.++.++..+..++..+.++... .+.-++.|+..+..++..+ ..
T Consensus 268 ~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl~ 346 (410)
T TIGR00885 268 AGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGIA 346 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444566666788899999999999999999998888888877777777655443 3445566677777777655 33
Q ss_pred ccccccccccccchhhhcccCccchhhhhhhccC
Q 027462 168 QKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
.+--+|+++.-+..-....+|..+.|.+...+.+
T Consensus 347 ~~~~g~~~~~~s~~l~~~~~Gga~~p~l~G~~~d 380 (410)
T TIGR00885 347 LKGLGQDTKYGAAGLVMAIIGGGIVPPLQGFIID 380 (410)
T ss_pred HhhhhhhhhhhHHHHHHHHhccchHHHHHHHHHH
Confidence 3333344433233333334899889988777766
No 197
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=97.27 E-value=0.0022 Score=60.01 Aligned_cols=114 Identities=14% Similarity=0.007 Sum_probs=89.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFG--RKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~G--rk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~ 163 (223)
+++..+.+.+.++..+...++.++.|+++|+.. ++....++.++..++.+.+.+++++..+++.-.+.|++.|.....
T Consensus 329 g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l 408 (509)
T KOG2504|consen 329 GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSL 408 (509)
T ss_pred CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999987 567777777777788888889999999999999999998887776
Q ss_pred hh--hcccc-cccccccccchhhhcccCccchhhhhhhc
Q 027462 164 RY--ISQKW-HHQNTEEHSPLASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 164 ~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
.+ ..+.. ..|=+.+++.+...-+++++++|.+...+
T Consensus 409 ~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~ 447 (509)
T KOG2504|consen 409 TPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLL 447 (509)
T ss_pred HHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceee
Confidence 43 33333 23456677777777777777777665533
No 198
>PF12832 MFS_1_like: MFS_1 like family
Probab=97.27 E-value=0.0012 Score=45.85 Aligned_cols=45 Identities=13% Similarity=0.271 Sum_probs=40.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHH
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAF 130 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~ 130 (223)
++++.+.+.+.+...+...++++++|.++||+++++.++....++
T Consensus 31 Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 31 GLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 479999999999999999999999999999999988877666543
No 199
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=97.22 E-value=0.0019 Score=51.09 Aligned_cols=74 Identities=27% Similarity=0.243 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 027462 89 SQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 89 ~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~ 163 (223)
+..-..-.+.......+++++.+.+.+++|.|+.++++.+...+-.+. -+-++.+.+++.-++.|++.+....+
T Consensus 36 ~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~a 109 (156)
T PF05978_consen 36 AGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTA 109 (156)
T ss_pred ccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHh
Confidence 333333455566667777888888999999999999999988754332 34566778889999999999998887
No 200
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=97.18 E-value=0.0014 Score=60.93 Aligned_cols=91 Identities=12% Similarity=0.017 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHhH----HhHHhhhchhHHHHHHHHHHHHHHHHHhhhhh---------HHHHHHHHHHHhhhhh
Q 027462 92 LAAFTSSLYISGLIASLFA----STVTRAFGRKASILVGGTAFLAGSAIGGAALN---------IYMLIFGRVLLGVGIG 158 (223)
Q Consensus 92 ~~~~~s~~~lg~~~~~~~~----g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~---------~~~l~v~r~l~G~g~g 158 (223)
.+++.+...+...+..++. +++.+|++.++.+.++.++..++.++.+++.+ ..+++...++.|+|.+
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 4566666666666666666 45555555668888899999888887776654 4588899999999999
Q ss_pred hhhhhhhhcccccccccccccchhhhcccCccchhhhhhhccCCCCCccccc
Q 027462 159 FTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAG 210 (223)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~ 210 (223)
...+. +..++.+..|++.||+.+|
T Consensus 398 ~~~p~----------------------------g~s~~~~~aP~~~rg~~~g 421 (500)
T PRK09584 398 MISGL----------------------------GLAMVAQLVPQRLMGFIMG 421 (500)
T ss_pred HHhHH----------------------------HHHHHHHhCcHHHHHHHHH
Confidence 99998 6666667777777776666
No 201
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=97.11 E-value=0.0068 Score=53.75 Aligned_cols=115 Identities=12% Similarity=0.015 Sum_probs=74.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHH-HHHHHHHHHHhh--hhhHHHHHHHHHHHhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGG-TAFLAGSAIGGA--ALNIYMLIFGRVLLGVGIGFTNQ 162 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~-l~~~~~~l~~~~--a~~~~~l~v~r~l~G~g~g~~~~ 162 (223)
+.+..+.+++.....++..++.++.+++.||++++....... .+..+..+.... ..+...+.+..++.|+|.+...+
T Consensus 239 g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 318 (394)
T PRK11652 239 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFP 318 (394)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 357888899888888999999999999999998433322121 111111111121 12445566677888888887666
Q ss_pred hhh--hcccccccccccccchhhhcccCccchhhhhhhcc
Q 027462 163 CRY--ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITA 200 (223)
Q Consensus 163 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
... ..+..+++++.+.+..+....+|..+++.+.....
T Consensus 319 ~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~ 358 (394)
T PRK11652 319 LATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLSAMLP 358 (394)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 543 33344445788888888888888888887655543
No 202
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=97.11 E-value=0.00016 Score=62.86 Aligned_cols=103 Identities=14% Similarity=0.134 Sum_probs=77.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhh-hchhHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRA-FGRKASILVGGTAFLAGSAIGGA---ALNIYMLIFGRVLLGVGIGFTN 161 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr-~Grk~~~~~~~l~~~~~~l~~~~---a~~~~~l~v~r~l~G~g~g~~~ 161 (223)
+++.++..++.+.+.+-.++.++++|++.|| +|-|..-++-+....++.++.+. .+.++++..+|++.|+|.- +
T Consensus 75 ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgE--S 152 (459)
T KOG4686|consen 75 NIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGE--S 152 (459)
T ss_pred ccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCch--h
Confidence 4577788888899999999999999999998 68887777777777778777664 5788999999999987643 3
Q ss_pred hhhh----hccccccc-ccccccchhhhcccCcc
Q 027462 162 QCRY----ISQKWHHQ-NTEEHSPLASKYVLPLV 190 (223)
Q Consensus 162 ~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~ 190 (223)
-+++ ..--+|+| -+.+|+.-.+-+-+|+.
T Consensus 153 lAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gst 186 (459)
T KOG4686|consen 153 LAVAQNKYAVYWFKGKELNFVFGLQLSVARLGST 186 (459)
T ss_pred hhhhhcceeEEEecCccccchhhHHHHHHHhhce
Confidence 3332 44445777 67778777776666665
No 203
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=96.96 E-value=0.0059 Score=54.23 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=45.3
Q ss_pred hhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHH--HHHHHHHHHHHHhH-HhHHhhhc
Q 027462 42 TGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFT--SSLYISGLIASLFA-STVTRAFG 118 (223)
Q Consensus 42 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~--s~~~lg~~~~~~~~-g~l~dr~G 118 (223)
..++..|...++..+. +|.+.++.+ ++.++++.+. ....+..++.+++. ++..||+|
T Consensus 8 ~ly~~~g~~~~~~~p~--lp~~l~~~g------------------~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g 67 (390)
T TIGR02718 8 LLYLSQGIPIGLAMDA--LPTLLREDG------------------APLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLG 67 (390)
T ss_pred HHHHHHHhHHHHHHHH--HHHHHHHcC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 3345555555555333 377777664 6999999973 55566676777777 55789999
Q ss_pred hhHHHHHHHHH
Q 027462 119 RKASILVGGTA 129 (223)
Q Consensus 119 rk~~~~~~~l~ 129 (223)
||+..++...+
T Consensus 68 ~r~~~i~~~~~ 78 (390)
T TIGR02718 68 RRRSWVLPMQC 78 (390)
T ss_pred cchhHHHHHHH
Confidence 99887666543
No 204
>PRK09669 putative symporter YagG; Provisional
Probab=96.95 E-value=0.0009 Score=60.76 Aligned_cols=110 Identities=7% Similarity=-0.055 Sum_probs=65.3
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhh----hchh-HHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHH
Q 027462 84 YCKFDSQLLAAFTSSLYISGLIASLFASTVTRA----FGRK-ASILVGGTAFLAGSAIGGAAL------NIYMLIFGRVL 152 (223)
Q Consensus 84 ~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr----~Grk-~~~~~~~l~~~~~~l~~~~a~------~~~~l~v~r~l 152 (223)
++++++..++.+.+...+.-.+..|+.|.+.|| +||| +.++.+.+...+..++....+ ...++++.-.+
T Consensus 39 ~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l 118 (444)
T PRK09669 39 VFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYIL 118 (444)
T ss_pred hcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 346899999999999999999999999999999 7775 445456565555544333332 23444444445
Q ss_pred Hhhhhhhhhhhh-h-hccccc--ccccccccchhhhcccCccchh
Q 027462 153 LGVGIGFTNQCR-Y-ISQKWH--HQNTEEHSPLASKYVLPLVSYP 193 (223)
Q Consensus 153 ~G~g~g~~~~~~-~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 193 (223)
.+.+.......- . .++..+ ++|++..+.-.....+|.++++
T Consensus 119 ~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~ 163 (444)
T PRK09669 119 LSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVS 163 (444)
T ss_pred HHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444322211 1 222232 2366655544444445544443
No 205
>PRK09669 putative symporter YagG; Provisional
Probab=96.91 E-value=0.009 Score=54.21 Aligned_cols=112 Identities=17% Similarity=0.133 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHH-Hhh-hhhHHHHHHHHHHHhhhhhhhhhhhh--
Q 027462 90 QLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAI-GGA-ALNIYMLIFGRVLLGVGIGFTNQCRY-- 165 (223)
Q Consensus 90 ~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~-~~~-a~~~~~l~v~r~l~G~g~g~~~~~~~-- 165 (223)
...+.+.....+..+++.++.+++.||+|+|+.+..+.++..+..+. ..+ .++...+++..++.|++.+...+...
T Consensus 264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am 343 (444)
T PRK09669 264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSM 343 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667888889999999999999999998887766543332 222 24555667777888888887766532
Q ss_pred hcc-----ccc-cc--ccccccchhhhcccCccchhhhhhhccC
Q 027462 166 ISQ-----KWH-HQ--NTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 166 ~~~-----~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
.++ .|+ ++ ++..++..+...-+|..+++.+..-++.
T Consensus 344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 221 22 4445555555666777778777766654
No 206
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=96.89 E-value=0.009 Score=53.39 Aligned_cols=105 Identities=10% Similarity=0.082 Sum_probs=62.0
Q ss_pred CCChhHHHHHHHHHH-HHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHH---hhh-hhHHHHHHHHH----HHhhh
Q 027462 86 KFDSQLLAAFTSSLY-ISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIG---GAA-LNIYMLIFGRV----LLGVG 156 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~-lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~---~~a-~~~~~l~v~r~----l~G~g 156 (223)
++++++.+++..... .+..++.++.+++.||+|+|+.+.++.++..+..+.. +.. ++.+.+++.-+ ..|++
T Consensus 241 G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 320 (402)
T PRK11902 241 GFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMG 320 (402)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 368889999876654 5689999999999999999998877776665554332 333 34444444433 33444
Q ss_pred hhhhhhhhh--hcccccccccccccchhhhcccCccchh
Q 027462 157 IGFTNQCRY--ISQKWHHQNTEEHSPLASKYVLPLVSYP 193 (223)
Q Consensus 157 ~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (223)
.+....... .+++. +.+.++.+++..+++.++.+
T Consensus 321 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~ 356 (402)
T PRK11902 321 TAAFVALLMALCNRSF---SATQYALLSALASVGRVYVG 356 (402)
T ss_pred HHHHHHHHHHhcCCCC---cHHHHHHHHHHHHHHHHHHH
Confidence 443333211 22222 23345555555555555333
No 207
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=96.88 E-value=0.012 Score=54.48 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=63.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHhhhhhhhhhh
Q 027462 88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL--NIYMLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~--~~~~l~v~r~l~G~g~g~~~~~ 163 (223)
++............+.+++.++..++.+|+|+|+++.++.++.+++.+..-+.+ +...+++...+.++|.+...+.
T Consensus 270 ~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l 347 (467)
T COG2211 270 PELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPL 347 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccc
Confidence 455666677777788888899999999999999999999999999887776654 6777888889988888887776
No 208
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=96.84 E-value=0.0039 Score=56.75 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=61.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHH--HHHHH-HhhhhhHH-HHHHHHHHHhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFL--AGSAI-GGAALNIY-MLIFGRVLLGVGIGFTN 161 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~--~~~l~-~~~a~~~~-~l~v~r~l~G~g~g~~~ 161 (223)
+++.++.|.+.+...+..++.+|+.|.+.||+|.|+-++....+.. .+.+. ..+.+-.. -+.++-.+.|+..+...
T Consensus 39 GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f 118 (412)
T PF01306_consen 39 GLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVF 118 (412)
T ss_dssp ---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999997665443332222 22222 22222111 11223333344334333
Q ss_pred hhhh-----hcccccccccccccchhhhcccCccchhhhhh
Q 027462 162 QCRY-----ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFS 197 (223)
Q Consensus 162 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (223)
.... ..+++.++++..++-.+.--++|..++..+..
T Consensus 119 ~~~~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G 159 (412)
T PF01306_consen 119 NAGVPLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAG 159 (412)
T ss_dssp TTHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhh
Confidence 3222 33455666677776665555555555544433
No 209
>PRK10429 melibiose:sodium symporter; Provisional
Probab=96.81 E-value=0.0016 Score=59.85 Aligned_cols=106 Identities=12% Similarity=0.013 Sum_probs=63.7
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhHHhHHh----hhch-hHHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHH
Q 027462 85 CKFDSQLLAAFTSSLYISGLIASLFASTVTR----AFGR-KASILVGGTAFLAGSAIGGAAL------NIYMLIFGRVLL 153 (223)
Q Consensus 85 ~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~d----r~Gr-k~~~~~~~l~~~~~~l~~~~a~------~~~~l~v~r~l~ 153 (223)
.++++..++.+....-+.-++..|+.|.++| |+|| |+.++.+.+...++..+.-..+ .+.++++.-.+.
T Consensus 37 ~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~ 116 (473)
T PRK10429 37 VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILW 116 (473)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999 5699 5555566666666544333222 123444444455
Q ss_pred hhhhhhhhhhhh--hcccccc--cccccccchhhhcccCcc
Q 027462 154 GVGIGFTNQCRY--ISQKWHH--QNTEEHSPLASKYVLPLV 190 (223)
Q Consensus 154 G~g~g~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~ 190 (223)
+++......... .++..++ .|++..+.-.....+|.+
T Consensus 117 ~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~ 157 (473)
T PRK10429 117 GMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGF 157 (473)
T ss_pred HHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 555444333211 2333322 366666653333344433
No 210
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=96.81 E-value=0.019 Score=51.36 Aligned_cols=101 Identities=13% Similarity=0.084 Sum_probs=73.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhh-chhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAF-GRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY 165 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~-Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~ 165 (223)
+|.++.+++.+...+..+..++....+.+|. ++|+..+...+++.++.+-+.+.+.-..+.- .++.|+|.|..++...
T Consensus 240 ~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL 318 (395)
T COG2807 240 LSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLAL 318 (395)
T ss_pred CCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHH
Confidence 7999999999999999999999999999964 6788877888888888776666654332222 4888999888888643
Q ss_pred --hccccccc------ccccccchhhhcccC
Q 027462 166 --ISQKWHHQ------NTEEHSPLASKYVLP 188 (223)
Q Consensus 166 --~~~~~~~~------~~~~~~~~~~~~~~~ 188 (223)
+++|.++. ..++|++--.++..|
T Consensus 319 ~li~~rs~~a~~Aa~LSgmaQg~GYllAa~G 349 (395)
T COG2807 319 TLILLRSSDAAIAAALSGMAQGVGYLLAAFG 349 (395)
T ss_pred HHHHhhcCChHHHHHHHHHhhhhhHHHHhhh
Confidence 66666542 344554443333333
No 211
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=96.77 E-value=0.012 Score=54.28 Aligned_cols=106 Identities=8% Similarity=-0.055 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHhhhch-----hHH--HHHHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHhh
Q 027462 92 LAAFTSSLYISGLIASLFASTVTRAFGR-----KAS--ILVGGTAFLAGSAIGGA---------ALNIYMLIFGRVLLGV 155 (223)
Q Consensus 92 ~~~~~s~~~lg~~~~~~~~g~l~dr~Gr-----k~~--~~~~~l~~~~~~l~~~~---------a~~~~~l~v~r~l~G~ 155 (223)
.+++.+...+..++..++..++..+.+| +.. +.+|.++..++.+..++ ..+++++++..++.++
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 6677777887777777776655445444 232 36788887777666654 4588899999999999
Q ss_pred hhhhhhhhhh--hcccccc-cccccccchhhhcccCccchhhhhh
Q 027462 156 GIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFS 197 (223)
Q Consensus 156 g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (223)
|.....+... .++..++ .|+++++.......+|..+++.+..
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~ 438 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLAT 438 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988844 4444433 3666666666666666665555443
No 212
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=96.77 E-value=0.018 Score=52.07 Aligned_cols=102 Identities=17% Similarity=0.085 Sum_probs=79.5
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHh-hhchhHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhh
Q 027462 82 SNYCKFDSQLLAAFTSSLYISGLIASLFASTVTR-AFGRKASILVGGTAFLAGSAIGGAA---LNIYMLIFGRVLLGVGI 157 (223)
Q Consensus 82 ~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~d-r~Grk~~~~~~~l~~~~~~l~~~~a---~~~~~l~v~r~l~G~g~ 157 (223)
++.++++..+...++..+..|.+++..+.|++.. |.+.|+...+++....++..+..++ .+.+.+...-++.|++.
T Consensus 236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~ 315 (403)
T PF03209_consen 236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGN 315 (403)
T ss_pred hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhh
Confidence 4445689999999999999999999999998887 6788888888888877766554443 45677778889999999
Q ss_pred hhhhhhhhhcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccc
Q 027462 158 GFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGE 211 (223)
Q Consensus 158 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~ 211 (223)
|..... .-....++..++..|..+|.
T Consensus 316 G~f~vg----------------------------als~mM~lt~~~~aG~~mG~ 341 (403)
T PF03209_consen 316 GLFTVG----------------------------ALSLMMDLTSAGRAGLFMGA 341 (403)
T ss_pred hHHHHH----------------------------HHHHHHhCCCCcchhHHHHH
Confidence 998776 55666777777776666553
No 213
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=96.64 E-value=0.0058 Score=56.53 Aligned_cols=101 Identities=18% Similarity=0.184 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhh--hhhhh--hhcccc
Q 027462 95 FTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGF--TNQCR--YISQKW 170 (223)
Q Consensus 95 ~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~--~~~~~--~~~~~~ 170 (223)
......+...+.+++.|.+.||+|||..+.+......+..+...+.. +++++ +.++..+. ..... +.++..
T Consensus 67 ~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis 141 (463)
T KOG2816|consen 67 KQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADIS 141 (463)
T ss_pred HHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeecc
Confidence 33355678888999999999999999999999988888777666665 33333 33322221 11111 266777
Q ss_pred ccc-ccccccchhhhcccCccchhhhhhhcc
Q 027462 171 HHQ-NTEEHSPLASKYVLPLVSYPLIFSITA 200 (223)
Q Consensus 171 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
+++ |+..++.+.+.++++.+++|+...-..
T Consensus 142 ~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~ 172 (463)
T KOG2816|consen 142 SEEERSSSIGLLSGTFGAGLVIGPALGGYLV 172 (463)
T ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 665 999999999999999998988654443
No 214
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=96.60 E-value=0.007 Score=56.20 Aligned_cols=102 Identities=11% Similarity=0.013 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHhhhchhH-------HHHHHHHHHHHHHHHHh-----hh-----hhHHHHHHHHHHHh
Q 027462 92 LAAFTSSLYISGLIASLFASTVTRAFGRKA-------SILVGGTAFLAGSAIGG-----AA-----LNIYMLIFGRVLLG 154 (223)
Q Consensus 92 ~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~-------~~~~~~l~~~~~~l~~~-----~a-----~~~~~l~v~r~l~G 154 (223)
..++.+...+..++..++.+++.||+++|+ .+.+|.++..++.+..+ .+ .+.++++..-++.|
T Consensus 311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g 390 (489)
T PRK10207 311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS 390 (489)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence 456666676777788888999999999886 36677777666654321 11 34667778888999
Q ss_pred hhhhhhhhhhh--hccccccc-ccccccchhhhcccCccchh
Q 027462 155 VGIGFTNQCRY--ISQKWHHQ-NTEEHSPLASKYVLPLVSYP 193 (223)
Q Consensus 155 ~g~g~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 193 (223)
+|.+...+... .....+++ ++.+++.......+|..++.
T Consensus 391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~ 432 (489)
T PRK10207 391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGG 432 (489)
T ss_pred HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888732 22222222 55555555544445544443
No 215
>PRK11462 putative transporter; Provisional
Probab=96.42 E-value=0.062 Score=49.39 Aligned_cols=74 Identities=14% Similarity=0.078 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh-hh-hHHHHHHHHHHHhhhhhhhhh
Q 027462 89 SQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA-AL-NIYMLIFGRVLLGVGIGFTNQ 162 (223)
Q Consensus 89 ~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~-a~-~~~~l~v~r~l~G~g~g~~~~ 162 (223)
+...+++...+.++.+++.++++++.||+|+|+.+..+..+..+..++..+ .. +...+++.-++.|++.+...+
T Consensus 262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 337 (460)
T PRK11462 262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTP 337 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777888888999999999999999998876555444333332222 22 222334444556666555443
No 216
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=96.30 E-value=0.074 Score=48.25 Aligned_cols=113 Identities=11% Similarity=0.065 Sum_probs=79.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY 165 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~ 165 (223)
+++..+.+...+.+..+.++|.+++.++..|+...+.+.+..++..+-.+..++.++...+ ..-++.|+..+..+|..+
T Consensus 268 g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~-~~l~~ig~F~simfPTIf 346 (422)
T COG0738 268 GLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVAL-YALFLIGLFNSIMFPTIF 346 (422)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHH-HHHHHHHHHhHHHHHHHH
Confidence 3578888999999999999999999999999999999888888777777777777774433 345566777777777643
Q ss_pred --hcccccccccccccchhhhcccCccchhhhhhhcc
Q 027462 166 --ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITA 200 (223)
Q Consensus 166 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
..+..+ +-+..-+.+-.-..+|..+.|.+..-..
T Consensus 347 slal~~l~-~~ts~~s~~l~maivGGAiiP~l~G~i~ 382 (422)
T COG0738 347 SLALKNLG-EHTSVGSGLLVMAIVGGAIIPPLQGVIA 382 (422)
T ss_pred HHHHhccC-ccccccceeeeeheecchHHHHHHHHHH
Confidence 222222 3344445555556677776776554443
No 217
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=96.29 E-value=0.0079 Score=55.48 Aligned_cols=111 Identities=8% Similarity=-0.092 Sum_probs=80.7
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh----------hhHHHHHHHHHHHh
Q 027462 85 CKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA----------LNIYMLIFGRVLLG 154 (223)
Q Consensus 85 ~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a----------~~~~~l~v~r~l~G 154 (223)
.++++.+.+.+.....++.+++..+.+++.+|++.|+.+.++.++..++.+...+. ++...+....++.+
T Consensus 283 lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~ 362 (468)
T TIGR00788 283 LPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAE 362 (468)
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHH
Confidence 46799999999999999999999999999999999999999999888877543211 22223334455666
Q ss_pred hhhhhhhhhhh--hcccccc-cccccccchhhhcccCccchhhh
Q 027462 155 VGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLI 195 (223)
Q Consensus 155 ~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 195 (223)
++.+....... ....-++ .+++.++.+.+...+|.++++.+
T Consensus 363 ~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~ 406 (468)
T TIGR00788 363 VLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFL 406 (468)
T ss_pred HHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHH
Confidence 66655544422 3444433 48888888888888888877753
No 218
>PRK09848 glucuronide transporter; Provisional
Probab=96.25 E-value=0.01 Score=53.95 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=51.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhh----chhHHH-HHHHHHHHHHHHH-Hhh----hh--hHHHHHHHHHHH
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAF----GRKASI-LVGGTAFLAGSAI-GGA----AL--NIYMLIFGRVLL 153 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~----Grk~~~-~~~~l~~~~~~l~-~~~----a~--~~~~l~v~r~l~ 153 (223)
+++..+++.+.+...+...+..++.|+++||. |||+.. +.+.+...+..++ ... ++ ...++++.-.+.
T Consensus 40 gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (448)
T PRK09848 40 GVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGL 119 (448)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHH
Confidence 57999999999999999999999999999997 776654 4454444333322 222 11 123334444566
Q ss_pred hhhhhhhhh
Q 027462 154 GVGIGFTNQ 162 (223)
Q Consensus 154 G~g~g~~~~ 162 (223)
+++.+...+
T Consensus 120 ~~~~~~~~~ 128 (448)
T PRK09848 120 GLCYSLVNI 128 (448)
T ss_pred HHHHHHhcc
Confidence 666666554
No 219
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.20 E-value=0.0011 Score=62.41 Aligned_cols=112 Identities=22% Similarity=0.191 Sum_probs=2.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh------------------------
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL------------------------ 141 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~------------------------ 141 (223)
+++.++.|++.+.+-++.++..++..++.+|-.|-+.+-++.+++.++++++++.+
T Consensus 34 ~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~ 113 (539)
T PF03137_consen 34 GLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNL 113 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccccccc
Confidence 37999999999999999999999999999999888999999999999988876531
Q ss_pred --------------------------hHHHHHHHHHHHhhhhhhhhhhh--hhccccccc-ccccccchhhhcccCccch
Q 027462 142 --------------------------NIYMLIFGRVLLGVGIGFTNQCR--YISQKWHHQ-NTEEHSPLASKYVLPLVSY 192 (223)
Q Consensus 142 --------------------------~~~~l~v~r~l~G~g~g~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 192 (223)
-+..+++++++.|+|....++.. |+++.-+++ .+.+.+++.+...+|..++
T Consensus 114 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~G 193 (539)
T PF03137_consen 114 CDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALG 193 (539)
T ss_dssp --------------------------------------SSS---------------------------------------
T ss_pred ccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHH
Confidence 01456678889999988877754 477777665 7778888887777777766
Q ss_pred hhhhh
Q 027462 193 PLIFS 197 (223)
Q Consensus 193 ~~~~~ 197 (223)
.++.+
T Consensus 194 f~lg~ 198 (539)
T PF03137_consen 194 FLLGS 198 (539)
T ss_dssp -----
T ss_pred HHHHH
Confidence 55443
No 220
>PF13347 MFS_2: MFS/sugar transport protein
Probab=96.10 E-value=0.0028 Score=57.30 Aligned_cols=107 Identities=11% Similarity=0.033 Sum_probs=68.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHh----hhchhHHHH-HHHHHHHHHHHHHhhh-h-------hHHHHHHHHHH
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTR----AFGRKASIL-VGGTAFLAGSAIGGAA-L-------NIYMLIFGRVL 152 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~d----r~Grk~~~~-~~~l~~~~~~l~~~~a-~-------~~~~l~v~r~l 152 (223)
++++...+.+.....+--++..|+.|.+.| |+|||+..+ ++.+...++..+.... + ...++++.-++
T Consensus 33 gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l 112 (428)
T PF13347_consen 33 GLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYIL 112 (428)
T ss_pred CCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHH
Confidence 579999999999999999999999999999 899876555 5666666666555544 3 12334444455
Q ss_pred Hhhhhhhhhhhhh--hcccccc--cccccccchhhhcccCccch
Q 027462 153 LGVGIGFTNQCRY--ISQKWHH--QNTEEHSPLASKYVLPLVSY 192 (223)
Q Consensus 153 ~G~g~g~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 192 (223)
..++.......-. .++..++ +|++..+.-.....+|.++.
T Consensus 113 ~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~ 156 (428)
T PF13347_consen 113 FDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLA 156 (428)
T ss_pred HHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHH
Confidence 5555554433211 3333333 36776666666666666433
No 221
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=96.08 E-value=0.045 Score=52.81 Aligned_cols=112 Identities=13% Similarity=0.158 Sum_probs=77.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhh-hchhHHHHHHHHHHHHHHHHHhhhhh--------HHHHHHHHHHHhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRA-FGRKASILVGGTAFLAGSAIGGAALN--------IYMLIFGRVLLGVG 156 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr-~Grk~~~~~~~l~~~~~~l~~~~a~~--------~~~l~v~r~l~G~g 156 (223)
+++++....+...+.....+.++++|.++|+ +||++.+.++.++..++.++.+++.. ....+++-++..+|
T Consensus 19 g~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G 98 (654)
T TIGR00926 19 GFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALG 98 (654)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhh
Confidence 4678888888888888888899999999998 69999999999999999887766411 12345666677778
Q ss_pred hhhhhhhhh--hcccccc----cccccccchhhhcccCccchhhhhh
Q 027462 157 IGFTNQCRY--ISQKWHH----QNTEEHSPLASKYVLPLVSYPLIFS 197 (223)
Q Consensus 157 ~g~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (223)
.|+.-++.. ..+-+++ ++...|...--.-.+|+++++.+..
T Consensus 99 ~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~ 145 (654)
T TIGR00926 99 TGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITP 145 (654)
T ss_pred ccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777654 3333432 2444555554444567666655443
No 222
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=95.67 E-value=0.009 Score=55.01 Aligned_cols=92 Identities=13% Similarity=-0.016 Sum_probs=58.4
Q ss_pred HHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhH--------HHHHHHHHHHhhhhhhhhhhhhhcccccc
Q 027462 101 ISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNI--------YMLIFGRVLLGVGIGFTNQCRYISQKWHH 172 (223)
Q Consensus 101 lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~--------~~l~v~r~l~G~g~g~~~~~~~~~~~~~~ 172 (223)
++.+.+-++...+.|++|||+..+.+++++.+..++.+...+. ..+.+..++.-+|-+...-. .-+..+..
T Consensus 359 ~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfi-vpaE~FPa 437 (538)
T KOG0252|consen 359 CSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFI-VPAEIFPA 437 (538)
T ss_pred HccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEE-eehhhchH
Confidence 3444466777889999999999999999999999888887651 12222333333443322111 13345555
Q ss_pred c-ccccccchhhhcccCccchh
Q 027462 173 Q-NTEEHSPLASKYVLPLVSYP 193 (223)
Q Consensus 173 ~-~~~~~~~~~~~~~~~~~~~~ 193 (223)
| |++.+++-.+.-=.|++++.
T Consensus 438 rvR~t~hGIsAA~GK~GAivg~ 459 (538)
T KOG0252|consen 438 RVRSTCHGISAASGKAGAIVGA 459 (538)
T ss_pred HHhhhhhhHHHHhccchHHHHH
Confidence 5 77777776666556666553
No 223
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=95.66 E-value=0.00016 Score=65.26 Aligned_cols=41 Identities=24% Similarity=0.356 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHh
Q 027462 98 SLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGG 138 (223)
Q Consensus 98 ~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~ 138 (223)
...+...++.++...+.||+|||+.++.+.++.+++.+..+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~ 334 (451)
T PF00083_consen 294 ILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILG 334 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccc
Confidence 33345556677777999999999999999888877766554
No 224
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=95.44 E-value=0.25 Score=44.53 Aligned_cols=78 Identities=14% Similarity=0.106 Sum_probs=47.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA-----ALNIYMLIFGRVLLGVGIGFT 160 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~-----a~~~~~l~v~r~l~G~g~g~~ 160 (223)
++++.+.++.......+..++..+.+.+.++..+++.......+..++.++... .+++...++..++.++|.+..
T Consensus 250 g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~ 329 (413)
T PRK15403 250 GMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLI 329 (413)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHH
Confidence 468899999888888888888888888765444433332222333333322221 233334566777888888877
Q ss_pred hhh
Q 027462 161 NQC 163 (223)
Q Consensus 161 ~~~ 163 (223)
.+.
T Consensus 330 ~p~ 332 (413)
T PRK15403 330 FPT 332 (413)
T ss_pred hHH
Confidence 665
No 225
>PRK11462 putative transporter; Provisional
Probab=95.29 E-value=0.048 Score=50.10 Aligned_cols=112 Identities=8% Similarity=-0.058 Sum_probs=66.3
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhh----hchhHHHH-HHHHHHHHHHHHHhhhhh------HHHHHHHHH
Q 027462 83 NYCKFDSQLLAAFTSSLYISGLIASLFASTVTRA----FGRKASIL-VGGTAFLAGSAIGGAALN------IYMLIFGRV 151 (223)
Q Consensus 83 ~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr----~Grk~~~~-~~~l~~~~~~l~~~~a~~------~~~l~v~r~ 151 (223)
|..++++..++.+....-+-=++.-|+.|.++|| +|||+..+ ++.+...++.++.-..+. ..++.+.-.
T Consensus 38 ~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~ 117 (460)
T PRK11462 38 DIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYT 117 (460)
T ss_pred HhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 3456899999999999999999999999999996 68865554 555666655444332221 233444444
Q ss_pred HHhhhhhhhhhhhh--hcccccc--cccccccchhhhcccCccchhh
Q 027462 152 LLGVGIGFTNQCRY--ISQKWHH--QNTEEHSPLASKYVLPLVSYPL 194 (223)
Q Consensus 152 l~G~g~g~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 194 (223)
+..++.......-. .+...++ +|++..+.-.....+|..+.+.
T Consensus 118 ~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~ 164 (460)
T PRK11462 118 LLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTV 164 (460)
T ss_pred HHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444332211 2222232 3666666666555555544443
No 226
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=95.25 E-value=0.076 Score=49.60 Aligned_cols=121 Identities=14% Similarity=0.055 Sum_probs=68.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhh----hchhHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRA----FGRKASILVGGTAFLAGS-AIGGAALNIYMLIFGRVLLGVGIGFT 160 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr----~Grk~~~~~~~l~~~~~~-l~~~~a~~~~~l~v~r~l~G~g~g~~ 160 (223)
+++..+.+.+...+..+.+++.+++|++.|| ..+|..+.....+..... .........+.....-.....+.+..
T Consensus 305 ~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~ 384 (495)
T KOG2533|consen 305 GYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIAT 384 (495)
T ss_pred CcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHH
Confidence 3588999999999999999999999999999 667766666555554433 33333322222222122222223222
Q ss_pred hhhhh--hcccc--cccccccccchhhhcccCcc-chhhhhhhccCCCCCc
Q 027462 161 NQCRY--ISQKW--HHQNTEEHSPLASKYVLPLV-SYPLIFSITAPKRSRG 206 (223)
Q Consensus 161 ~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~rg 206 (223)
.++.. .+.-. +.||....+....+++++.. .++.+.+...|.-.++
T Consensus 385 ~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~ 435 (495)
T KOG2533|consen 385 AIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWG 435 (495)
T ss_pred HHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhh
Confidence 22221 22222 33466666666666664444 4555555556643333
No 227
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.18 E-value=0.027 Score=51.11 Aligned_cols=114 Identities=12% Similarity=-0.006 Sum_probs=74.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchh-HHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh-
Q 027462 88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRK-ASIL-VGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR- 164 (223)
Q Consensus 88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk-~~~~-~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~- 164 (223)
+.++++...--..+.+.++..+.|.+.||++.- +... .+.+..........+++++..+++-++..+++.+......
T Consensus 304 p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~ 383 (464)
T KOG3764|consen 304 PGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLI 383 (464)
T ss_pred CCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHh
Confidence 445777777778889999999999999999943 3333 3333333445556678999999988888877766655432
Q ss_pred h-----hcccccc---cccccccchhhhcccCccchhhhhhhccC
Q 027462 165 Y-----ISQKWHH---QNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 165 ~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
+ .+.+-.+ .=+..+++-...|++|..++|.+..+...
T Consensus 384 P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~ 428 (464)
T KOG3764|consen 384 PTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVE 428 (464)
T ss_pred hhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhee
Confidence 1 1221111 12334455556677888888887666554
No 228
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=94.94 E-value=0.14 Score=47.74 Aligned_cols=93 Identities=15% Similarity=0.127 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHhhhchh-------HHHHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHHh
Q 027462 91 LLAAFTSSLYISGLIASLFASTVTRAFGRK-------ASILVGGTAFLAGSAIGGAA---------LNIYMLIFGRVLLG 154 (223)
Q Consensus 91 ~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk-------~~~~~~~l~~~~~~l~~~~a---------~~~~~l~v~r~l~G 154 (223)
..+|+.+.+.+..++.+|+.+++-.|.+|| .-+.++.++..++.++..++ .+..++++.-++.+
T Consensus 309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t 388 (493)
T PRK15462 309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG 388 (493)
T ss_pred CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence 356777888887778888877776776332 13667777777776655432 25577888889999
Q ss_pred hhhhhhhhhhhhcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccc
Q 027462 155 VGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGE 211 (223)
Q Consensus 155 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~ 211 (223)
+|.-...|. +...+++..|++.||+.+|.
T Consensus 389 ~gEl~~sPv----------------------------gls~~~~laP~~~~g~~mg~ 417 (493)
T PRK15462 389 FAELFIDPV----------------------------AMSQITRIEIPGVTGVLTGI 417 (493)
T ss_pred HHHHHHChH----------------------------HHHHHHHhChHHHHHHHHHH
Confidence 999999998 88888899998888888875
No 229
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=94.70 E-value=0.07 Score=50.92 Aligned_cols=111 Identities=14% Similarity=-0.028 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHhHHhhhch-hHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHhhhhhhhhhhhh-
Q 027462 90 QLLAAFTSSLYISGLIASLFASTVTRAFGR-KASILVGGTAFLAGSAIGGAA--LNIYMLIFGRVLLGVGIGFTNQCRY- 165 (223)
Q Consensus 90 ~~~~~~~s~~~lg~~~~~~~~g~l~dr~Gr-k~~~~~~~l~~~~~~l~~~~a--~~~~~l~v~r~l~G~g~g~~~~~~~- 165 (223)
...+++.....++..+++++.|.+..+++| |+.++++.+++.++.-+++.. +|....+..-++.|+|.|.......
T Consensus 349 ~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~ 428 (599)
T PF06609_consen 349 TEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIV 428 (599)
T ss_pred ceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHH
Confidence 356788888999999999999999998877 677677777766543333332 4545556677788888887766543
Q ss_pred -hccccccc-ccccccchhhhcccCccchhhhhhhcc
Q 027462 166 -ISQKWHHQ-NTEEHSPLASKYVLPLVSYPLIFSITA 200 (223)
Q Consensus 166 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
..-..+++ =..+.+...+.+.+|..++..+-..++
T Consensus 429 ~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 429 IAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred eeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 22222333 566777777778777777766554443
No 230
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=94.45 E-value=0.2 Score=46.47 Aligned_cols=115 Identities=14% Similarity=0.132 Sum_probs=90.6
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhHH-hHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 027462 85 CKFDSQLLAAFTSSLYISGLIASLFAS-TVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 85 ~~~s~~~~~~~~s~~~lg~~~~~~~~g-~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~ 163 (223)
.++++++.+.+.+.......++.++.. .+...+|-|+.+.+|.+...+..+..+++++.++++...++.++........
T Consensus 272 f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~~~pa~ 351 (463)
T KOG2816|consen 272 FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGIVFPAI 351 (463)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcchhHHH
Confidence 357999999888888888888887776 7777889899999999999999999999999888888777776554443333
Q ss_pred hhhcccc--cccccccccchhhhcccCccchhhhhhhc
Q 027462 164 RYISQKW--HHQNTEEHSPLASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 164 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
+.+..++ +++++..++.++...++..++.|.+....
T Consensus 352 ~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 352 RAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred HhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence 3455555 44599999999999998888888765443
No 231
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=94.17 E-value=0.43 Score=44.40 Aligned_cols=74 Identities=15% Similarity=0.042 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHH-HHHHHHhhh--hhHHHHHHHHHHHhhhhhhhhhh
Q 027462 90 QLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFL-AGSAIGGAA--LNIYMLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 90 ~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~-~~~l~~~~a--~~~~~l~v~r~l~G~g~g~~~~~ 163 (223)
+..++..+...+-..+..|+.|-++|+-|+|+.++..+.+.. +......+. .++....+.-.+.-++.+.....
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vf 146 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVF 146 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888889999999999999999998776665555444 344444442 33333334444445566666666
No 232
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.09 E-value=0.027 Score=54.67 Aligned_cols=112 Identities=22% Similarity=0.155 Sum_probs=92.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhh-----------h------------
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAAL-----------N------------ 142 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~-----------~------------ 142 (223)
+++.++.|++.+.+-++..+...+..++..|..|-+.+-+|.+++.++++++++.+ .
T Consensus 128 ~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~ 207 (735)
T KOG3626|consen 128 KISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSL 207 (735)
T ss_pred CCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCcccc
Confidence 47899999999999999999999999999999999999999999999999887641 0
Q ss_pred -----------------------------HHHHHHHHHHHhhhhhhhhhhh--hhccccccc-ccccccchhhhcccCcc
Q 027462 143 -----------------------------IYMLIFGRVLLGVGIGFTNQCR--YISQKWHHQ-NTEEHSPLASKYVLPLV 190 (223)
Q Consensus 143 -----------------------------~~~l~v~r~l~G~g~g~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~ 190 (223)
+..++++.++.|+|....++.. |+++.-+++ .+...+++.+.+.+|.+
T Consensus 208 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPa 287 (735)
T KOG3626|consen 208 SFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPA 287 (735)
T ss_pred chhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhH
Confidence 1245678889999988877754 577777665 78888999988888888
Q ss_pred chhhhhh
Q 027462 191 SYPLIFS 197 (223)
Q Consensus 191 ~~~~~~~ 197 (223)
++.++.+
T Consensus 288 iGfllgS 294 (735)
T KOG3626|consen 288 IGFLLGS 294 (735)
T ss_pred HHHHHHH
Confidence 7766543
No 233
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=94.04 E-value=0.031 Score=52.44 Aligned_cols=107 Identities=10% Similarity=0.026 Sum_probs=81.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--
Q 027462 88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY-- 165 (223)
Q Consensus 88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~-- 165 (223)
.++..|........|-+..=++.+++.+++|+-+++.+++.+..+-.+......|.++.....+++|+..+....+..
T Consensus 404 ~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY 483 (618)
T KOG3762|consen 404 IKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISY 483 (618)
T ss_pred cceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHH
Confidence 455566656666667777778889999999999999999999998888889999999999999999999999988742
Q ss_pred hccccccc-ccccccchhhh-----cccCccchhh
Q 027462 166 ISQKWHHQ-NTEEHSPLASK-----YVLPLVSYPL 194 (223)
Q Consensus 166 ~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~ 194 (223)
+|..-.++ |..++++++.+ -++|++|+..
T Consensus 484 ~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~ 518 (618)
T KOG3762|consen 484 ASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGF 518 (618)
T ss_pred HHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhh
Confidence 55555444 66666655443 3455555544
No 234
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=93.39 E-value=0.93 Score=42.23 Aligned_cols=71 Identities=14% Similarity=-0.040 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHhhhch-hHHHHHHHHHHHHHHHHHhhhhh---------------------HHHHHHHH
Q 027462 93 AAFTSSLYISGLIASLFASTVTRAFGR-KASILVGGTAFLAGSAIGGAALN---------------------IYMLIFGR 150 (223)
Q Consensus 93 ~~~~s~~~lg~~~~~~~~g~l~dr~Gr-k~~~~~~~l~~~~~~l~~~~a~~---------------------~~~l~v~r 150 (223)
.|....+.+...+.+++..++.+++|+ |+...++.++..++.+...+-++ ....++..
T Consensus 308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (477)
T TIGR01301 308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF 387 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence 344555556666778888999999984 77778887777777665554322 25566677
Q ss_pred HHHhhhhhhhhhh
Q 027462 151 VLLGVGIGFTNQC 163 (223)
Q Consensus 151 ~l~G~g~g~~~~~ 163 (223)
.+.|+..+..+..
T Consensus 388 ~~~Gi~~A~~~si 400 (477)
T TIGR01301 388 AILGIPLAITYSI 400 (477)
T ss_pred HHhhHHHHHHHHH
Confidence 7888888887777
No 235
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=92.92 E-value=0.42 Score=44.28 Aligned_cols=95 Identities=15% Similarity=0.020 Sum_probs=60.9
Q ss_pred HHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHH---HHHHHHHHhhhhhhhhhhh--hhccccccc-cc
Q 027462 102 SGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYM---LIFGRVLLGVGIGFTNQCR--YISQKWHHQ-NT 175 (223)
Q Consensus 102 g~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~---l~v~r~l~G~g~g~~~~~~--~~~~~~~~~-~~ 175 (223)
....+....+...|++|||.....+.++..++.++.++...... ..+...+..++.+....+. +........ |.
T Consensus 362 ~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~ 441 (521)
T KOG0255|consen 362 VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRN 441 (521)
T ss_pred HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 55555666689999999999999999999999888887643222 2333333333333333332 244455443 77
Q ss_pred ccccchhhhcccCccchhhhh
Q 027462 176 EEHSPLASKYVLPLVSYPLIF 196 (223)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~ 196 (223)
.+.+..+...-+|.+++|.+.
T Consensus 442 ~~~~~~~~~~~~~~i~ap~~~ 462 (521)
T KOG0255|consen 442 TAVGAISAAARLGSILAPLFP 462 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777666654
No 236
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=92.82 E-value=0.63 Score=42.30 Aligned_cols=98 Identities=17% Similarity=0.219 Sum_probs=67.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhc-----hhHHHHHHHHH-HHHHHHHHhhh-----h--------hHH--
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFG-----RKASILVGGTA-FLAGSAIGGAA-----L--------NIY-- 144 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~G-----rk~~~~~~~l~-~~~~~l~~~~a-----~--------~~~-- 144 (223)
.++...++.+.+...+.+. ..+..|..+|+.+ ||..++..-.+ +..+..+...+ . .+.
T Consensus 11 ~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~ 89 (403)
T PF03209_consen 11 GVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGL 89 (403)
T ss_pred ccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHH
Confidence 4678888888888777665 4788999999999 88666654444 44433333221 2 222
Q ss_pred -HHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccch
Q 027462 145 -MLIFGRVLLGVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGES 212 (223)
Q Consensus 145 -~l~v~r~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~ 212 (223)
...+.-++.|+|.+..... .-.+..+..|+++|++++++.
T Consensus 90 ~~a~l~F~l~G~G~~~s~T~----------------------------~lALl~D~~~e~~R~~~v~iv 130 (403)
T PF03209_consen 90 ALAALAFLLYGLGVHASGTS----------------------------FLALLADLAPEERRPRVVAIV 130 (403)
T ss_pred HHHHHHHHHHHhhHhHhHHH----------------------------HHHHHHhcCCHhhhhhhHHHH
Confidence 2334556778888887777 777888888888888888864
No 237
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=92.80 E-value=0.26 Score=46.43 Aligned_cols=55 Identities=9% Similarity=0.207 Sum_probs=44.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHH-HHHHhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAG-SAIGGAA 140 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~-~l~~~~a 140 (223)
++++.+.+.++..-.+..+++.|++|+++||+-+|+.++++.++..+. .++..+.
T Consensus 42 Gl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv 97 (618)
T KOG3762|consen 42 GLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFV 97 (618)
T ss_pred CCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeec
Confidence 379999999999999999999999999999998877777777766544 3444443
No 238
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=92.65 E-value=0.28 Score=45.52 Aligned_cols=82 Identities=16% Similarity=0.179 Sum_probs=57.1
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhh----hchh-HHHHHHHHHHHHHHHHHhhhh------hHHHHHHHH
Q 027462 82 SNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRA----FGRK-ASILVGGTAFLAGSAIGGAAL------NIYMLIFGR 150 (223)
Q Consensus 82 ~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr----~Grk-~~~~~~~l~~~~~~l~~~~a~------~~~~l~v~r 150 (223)
+|..++++..++.+....-+-=++.-|+.|.+.|| +||+ +-++.+.+...+...++-.++ +.....+.-
T Consensus 40 Tdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY 119 (467)
T COG2211 40 TDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTY 119 (467)
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHH
Confidence 34557899999999988888889999999999997 6764 555566677766666555554 233444555
Q ss_pred HHHhhhhhhhhhh
Q 027462 151 VLLGVGIGFTNQC 163 (223)
Q Consensus 151 ~l~G~g~g~~~~~ 163 (223)
.+.++++......
T Consensus 120 ~l~~l~YT~vniP 132 (467)
T COG2211 120 MLLGLGYTLVNIP 132 (467)
T ss_pred HHHHHHHHheeCc
Confidence 5666666655443
No 239
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=92.48 E-value=0.23 Score=45.89 Aligned_cols=111 Identities=16% Similarity=0.190 Sum_probs=64.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhh----hchhHHHHHHHHHHH-HHHHHHhhhhhHHHHH------------HH
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRA----FGRKASILVGGTAFL-AGSAIGGAALNIYMLI------------FG 149 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr----~Grk~~~~~~~l~~~-~~~l~~~~a~~~~~l~------------v~ 149 (223)
++....+.+--+..+...+.+|+.|...|| +||||.++.+..... ++.++.+.+.++..++ +.
T Consensus 64 vphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~ 143 (498)
T KOG0637|consen 64 VPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIV 143 (498)
T ss_pred CCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHH
Confidence 455555555556667777888999998886 899888776655554 4555666665442221 12
Q ss_pred HHHHhhh-----hhh-hhhhhh-hcccccc--cccccccchhhhcccCccchhhhhh
Q 027462 150 RVLLGVG-----IGF-TNQCRY-ISQKWHH--QNTEEHSPLASKYVLPLVSYPLIFS 197 (223)
Q Consensus 150 r~l~G~g-----~g~-~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (223)
-++.|+. .-. --++++ +.+...+ |++++.+.....-++|.+++.+.-+
T Consensus 144 ~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 144 LFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred HHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 2222321 100 111222 3443422 3444999998888899888876443
No 240
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=92.41 E-value=1 Score=41.18 Aligned_cols=76 Identities=9% Similarity=0.019 Sum_probs=48.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHH-HHHHHHHHHHHHhhhhh--HH-HHHHHHHHHhhhhhhhhhh
Q 027462 88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILV-GGTAFLAGSAIGGAALN--IY-MLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~-~~l~~~~~~l~~~~a~~--~~-~l~v~r~l~G~g~g~~~~~ 163 (223)
+.+.++...+...+..++-+|+.|.++|+.|+|+.... ...+-.+..+...+.++ .. ...+.-.+..++.......
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 34566777888888889999999999999997665544 44444444444444433 33 3344455666666655554
No 241
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=92.20 E-value=0.03 Score=48.62 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=54.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGG---AALNIYMLIFGRVLLGVGIGFTNQ 162 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~---~a~~~~~l~v~r~l~G~g~g~~~~ 162 (223)
++...+++.+.-+.+-..++...+.|-++|+.|||+.-+ .+++.+.++. .++.+..++++|++.|+.-+....
T Consensus 68 gFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracv----tycitYiLsCiTKhSpqYkVLmVGR~LGGiaTsLLFS 143 (454)
T KOG4332|consen 68 GFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACV----TYCITYILSCITKHSPQYKVLMVGRVLGGIATSLLFS 143 (454)
T ss_pred CccCCccceeeecccchHHHHHHHHHHHHhhhcccccee----eehHHHHHHHHhhcCCceEEEeehhhhhhHHHHHHHH
Confidence 356667766666666666777778888999999998644 3444444444 457888999999999998777666
Q ss_pred hh
Q 027462 163 CR 164 (223)
Q Consensus 163 ~~ 164 (223)
+.
T Consensus 144 aF 145 (454)
T KOG4332|consen 144 AF 145 (454)
T ss_pred HH
Confidence 53
No 242
>PTZ00207 hypothetical protein; Provisional
Probab=91.30 E-value=0.65 Score=44.41 Aligned_cols=108 Identities=10% Similarity=-0.021 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHhHHhHH---hh------hchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462 95 FTSSLYISGLIASLFASTVT---RA------FGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY 165 (223)
Q Consensus 95 ~~s~~~lg~~~~~~~~g~l~---dr------~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~ 165 (223)
+.+.+.++.++|.+..|.+. .| +- |+..+....++.++.++.++......+.+.-++.|++.|...++..
T Consensus 396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~p-rt~~l~~~~~~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~ 474 (591)
T PTZ00207 396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVP-ITIALFIPSVCIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIA 474 (591)
T ss_pred ehhhhhHHHHhhHHHHHHHHHHHHhhccccccc-hhHHHHHHHHHHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHH
Confidence 56667777777777777665 11 22 2233333333666666666664335888999999999999888743
Q ss_pred --hcccccccccccccchhhhcccCccchh-hhhhhccCCC
Q 027462 166 --ISQKWHHQNTEEHSPLASKYVLPLVSYP-LIFSITAPKR 203 (223)
Q Consensus 166 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~ 203 (223)
.|..|-+-=++-+++....-.+|+.+.. .+..++.+.+
T Consensus 475 ~i~selFgk~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~e 515 (591)
T PTZ00207 475 LVTRTIFAKDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQ 515 (591)
T ss_pred HHHHHHhccchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666653255566666666666666542 3455555543
No 243
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.12 E-value=0.7 Score=42.83 Aligned_cols=67 Identities=25% Similarity=0.323 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 027462 96 TSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 96 ~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~ 163 (223)
.++......+.+++.+.+.|..|.|+.+.++...+.+..+..-. .|-..+++.-++.|+|.+.....
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~G 122 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTG 122 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecc
Confidence 66777788889999999999999999999999988776554333 44566778899999999976664
No 244
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=89.25 E-value=2.9 Score=38.28 Aligned_cols=78 Identities=10% Similarity=0.041 Sum_probs=62.8
Q ss_pred cCCChhHHHH-HHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhh
Q 027462 85 CKFDSQLLAA-FTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQ 162 (223)
Q Consensus 85 ~~~s~~~~~~-~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~ 162 (223)
.+++..++.- +.-...-..++.-++...+.|.++.|++++++.+...+...+.-+.++...+-+..++.|+..+....
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~eva 113 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAEVA 113 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHH
Confidence 3466666643 44444556677778888999999999999999999999999888999999999999999988776544
No 245
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=88.59 E-value=2.3 Score=40.90 Aligned_cols=49 Identities=8% Similarity=0.013 Sum_probs=38.0
Q ss_pred CCChhHHHHHHHHHHH-HHHHHHHhHHhHHhhhc--hhHHHHHHHHHHHHHH
Q 027462 86 KFDSQLLAAFTSSLYI-SGLIASLFASTVTRAFG--RKASILVGGTAFLAGS 134 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~l-g~~~~~~~~g~l~dr~G--rk~~~~~~~l~~~~~~ 134 (223)
++++.+.+++.....+ +.+++.+++|++.||++ .|+.+..+.++..++.
T Consensus 362 g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~ 413 (633)
T TIGR00805 362 GISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY 413 (633)
T ss_pred CCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence 4789999998887765 67899999999999998 4566666666555553
No 246
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=88.22 E-value=6.1 Score=36.40 Aligned_cols=98 Identities=17% Similarity=0.174 Sum_probs=68.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh------h----hHHHHHHHHHHHhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA------L----NIYMLIFGRVLLGV 155 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a------~----~~~~l~v~r~l~G~ 155 (223)
++++..++.+-+...+..+.+.++..++.+|+|..+.=+.+.....+...++..+ + +...++.+-++.=+
T Consensus 289 G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~ 368 (432)
T PF06963_consen 289 GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRI 368 (432)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999998877777766665443333221 1 22233333333334
Q ss_pred hhhhhhhhhhhcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccc
Q 027462 156 GIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGE 211 (223)
Q Consensus 156 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~ 211 (223)
|.=....+ ..-++.|..|.++||...|.
T Consensus 369 GLW~fDL~----------------------------~~qi~Qe~V~~~~Rg~v~gv 396 (432)
T PF06963_consen 369 GLWSFDLA----------------------------VTQIMQENVPESERGAVSGV 396 (432)
T ss_pred HHHhhhHH----------------------------HHHhhcccCCHHHhhHHHHH
Confidence 44334444 56678899999999998875
No 247
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=87.56 E-value=0.96 Score=41.14 Aligned_cols=121 Identities=14% Similarity=0.045 Sum_probs=86.6
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhh
Q 027462 85 CKFDSQLLAAFTSSLYISGLIASLFASTVTRAFG--RKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQ 162 (223)
Q Consensus 85 ~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~G--rk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~ 162 (223)
+++++.++|-+.+...++.++.+....+..||.. -|..+....++..-..++.+.+.+..++..+..+-.+..+...+
T Consensus 292 fg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt 371 (451)
T KOG2615|consen 292 FGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVT 371 (451)
T ss_pred cCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhH
Confidence 4679999999999999999999999899999887 67777767666666667777777777777777777766665555
Q ss_pred hhh--hcccc-cccccccccchhhhcccCccchhhhh---hhccCCCCC
Q 027462 163 CRY--ISQKW-HHQNTEEHSPLASKYVLPLVSYPLIF---SITAPKRSR 205 (223)
Q Consensus 163 ~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~r 205 (223)
+.. ..... +++|+.+.++..+.-+++=.++|+.. .+|.+.+..
T Consensus 372 ~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~ 420 (451)
T KOG2615|consen 372 CLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQP 420 (451)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCc
Confidence 533 22222 45688888877777777777777754 456655433
No 248
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=85.15 E-value=8.1 Score=36.18 Aligned_cols=92 Identities=18% Similarity=0.076 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHhhhchh-------HHHHHHHHHHHHHHHHHhhh----------hhHHHHHHHHHHH
Q 027462 91 LLAAFTSSLYISGLIASLFASTVTRAFGRK-------ASILVGGTAFLAGSAIGGAA----------LNIYMLIFGRVLL 153 (223)
Q Consensus 91 ~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk-------~~~~~~~l~~~~~~l~~~~a----------~~~~~l~v~r~l~ 153 (223)
..+|..+...+.-++.+++..++..+.++| .-+-++..+..++.++...+ .+..+++..-+++
T Consensus 325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~ 404 (498)
T COG3104 325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ 404 (498)
T ss_pred CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence 445677777777788888888888775544 33445555555555544433 2467888888999
Q ss_pred hhhhhhhhhhhhhcccccccccccccchhhhcccCccchhhhhhhccCCCCCccccc
Q 027462 154 GVGIGFTNQCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAG 210 (223)
Q Consensus 154 G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~ 210 (223)
++|.=..++. +-.+++...|+...++.++
T Consensus 405 s~gEL~iSpv----------------------------GLs~~t~laP~~~~s~~ma 433 (498)
T COG3104 405 SFGELFISPV----------------------------GLSMVTKLAPPALKSFIMA 433 (498)
T ss_pred HHHHHHhCHH----------------------------HHHHHHHhChHHHHHHHHH
Confidence 9998888888 7777788888777777665
No 249
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=85.10 E-value=4.2 Score=37.14 Aligned_cols=109 Identities=11% Similarity=0.063 Sum_probs=64.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhc-----hhHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFG-----RKASILVGGTAFLAGSAIGGAA----LNIYMLIFGRVLLGVG 156 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~G-----rk~~~~~~~l~~~~~~l~~~~a----~~~~~l~v~r~l~G~g 156 (223)
++++++...+.+...+-..+ .++.|.+.|.+- ||+-++++.++..++.+..++. .+.....+.-++..+|
T Consensus 21 ~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g 99 (433)
T PF03092_consen 21 GLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFG 99 (433)
T ss_pred CCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHH
Confidence 57899988887777765543 577899999973 4455555666665555544443 2445555555666666
Q ss_pred hhhhhhhhh--hcccccc---cccccccchhhhcccCccchhhh
Q 027462 157 IGFTNQCRY--ISQKWHH---QNTEEHSPLASKYVLPLVSYPLI 195 (223)
Q Consensus 157 ~g~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 195 (223)
......+.= ..+..++ .|+..++.......+|.+++..+
T Consensus 100 ~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l 143 (433)
T PF03092_consen 100 YAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLL 143 (433)
T ss_pred HHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 666555421 2222222 14555666666666676665443
No 250
>PRK03612 spermidine synthase; Provisional
Probab=83.92 E-value=20 Score=33.84 Aligned_cols=113 Identities=12% Similarity=0.052 Sum_probs=56.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHH---H-HHH---hhhhhH-HHHHHHHHHHhhhhhh
Q 027462 88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAG---S-AIG---GAALNI-YMLIFGRVLLGVGIGF 159 (223)
Q Consensus 88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~---~-l~~---~~a~~~-~~l~v~r~l~G~g~g~ 159 (223)
+....+.+.+.+..|..+|..+.+++.++.-++...+- ..+..++ . ++. ++.... ..++...++.++..|.
T Consensus 48 s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e-~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~ 126 (521)
T PRK03612 48 SVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVE-LLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGM 126 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888899999999999998887754433322211 1111111 1 111 111111 1122334455677777
Q ss_pred hhhhhh-hcccc-----cccccccccchhhhcccCccchhhhhhhccC
Q 027462 160 TNQCRY-ISQKW-----HHQNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 160 ~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
..|... +..+. .+.-++.++.=..+..+|+++.+.+...++.
T Consensus 127 ~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG 174 (521)
T PRK03612 127 EIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLG 174 (521)
T ss_pred HHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcc
Confidence 766533 22222 1223455555555555666655555544444
No 251
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=83.83 E-value=8 Score=35.30 Aligned_cols=70 Identities=6% Similarity=-0.092 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHh------hhhhHHHHHHHHHHHhhhhhhhhh
Q 027462 89 SQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGG------AALNIYMLIFGRVLLGVGIGFTNQ 162 (223)
Q Consensus 89 ~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~------~a~~~~~l~v~r~l~G~g~g~~~~ 162 (223)
..+..+....+.+|-+++.--...+ |+ |+..+...+ ..+-.++.. +-++.+.+++.-+..|+..|..+.
T Consensus 280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~L-Q~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 280 RDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLL-QVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 4566777888888877776433322 33 333333332 222222211 235667777778888988888887
Q ss_pred h
Q 027462 163 C 163 (223)
Q Consensus 163 ~ 163 (223)
-
T Consensus 355 N 355 (402)
T PF02487_consen 355 N 355 (402)
T ss_pred H
Confidence 6
No 252
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=83.79 E-value=23 Score=33.81 Aligned_cols=53 Identities=17% Similarity=0.096 Sum_probs=41.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhh-chhHHHHHHHHHHHHHHHHHhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAF-GRKASILVGGTAFLAGSAIGGA 139 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~-Grk~~~~~~~l~~~~~~l~~~~ 139 (223)
.+.....-..+.+.-.....++++++++|.| ||-+++.++.++...+..+..+
T Consensus 70 ~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~ 123 (571)
T KOG1237|consen 70 ASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTL 123 (571)
T ss_pred cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777888889999999996 8889999999998888655443
No 253
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=79.07 E-value=10 Score=34.64 Aligned_cols=99 Identities=15% Similarity=0.099 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh-hhccccc
Q 027462 93 AAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR-YISQKWH 171 (223)
Q Consensus 93 ~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~-~~~~~~~ 171 (223)
+.+.-+-.+-.++..+++.++.+|+..+.-..++..+..++.++.+++++...-+++-++.+++.|...... ....+++
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~~y~ 141 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTHFYG 141 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHHhcC
Confidence 334444555566677778888898876655667778888999999999998877788888887777665542 1333444
Q ss_pred ccccccccchhhhcccCccchhh
Q 027462 172 HQNTEEHSPLASKYVLPLVSYPL 194 (223)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~ 194 (223)
+ +..+..+++-+.+.+++..
T Consensus 142 ~---~~l~~wssGTG~aGl~Ga~ 161 (402)
T PF02487_consen 142 K---SSLSAWSSGTGGAGLVGAL 161 (402)
T ss_pred c---cccccccCCcChhhHHHHH
Confidence 3 3455555555555555544
No 254
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=76.98 E-value=18 Score=25.62 Aligned_cols=44 Identities=16% Similarity=0.257 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHH
Q 027462 89 SQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLA 132 (223)
Q Consensus 89 ~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~ 132 (223)
....+.......++..+++.+.+.+.|..|.+..+.+...+..+
T Consensus 86 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (141)
T TIGR00880 86 GVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALA 129 (141)
T ss_pred hHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHH
Confidence 44556677778889999999999999988877766655544443
No 255
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=76.98 E-value=1.2 Score=38.67 Aligned_cols=63 Identities=10% Similarity=-0.041 Sum_probs=52.3
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccchhhhhhhccC
Q 027462 139 AALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 139 ~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
...+++.+++.-++.|.|.+...+..+ +.+.-++ ++++..+..++.+++|++++|.+.+.+..
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~ 71 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLIL 71 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 446889999999999999999888765 5544443 58889999999999999999999887664
No 256
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=76.06 E-value=7.1 Score=36.23 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=49.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhch-hHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGR-KASILVGGTAFLAGSAIGGAA----LNIYMLIFGRVLLGVGIGFTN 161 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Gr-k~~~~~~~l~~~~~~l~~~~a----~~~~~l~v~r~l~G~g~g~~~ 161 (223)
++....|++.....++.++++.+.|.+.||... |..+++......++.+..... .....++..-.+.|++....+
T Consensus 298 Y~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~ 377 (480)
T KOG2563|consen 298 YEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYL 377 (480)
T ss_pred CCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCC
Confidence 466788999999999999999999999999854 555555555554443211111 112233444455566665566
Q ss_pred hh
Q 027462 162 QC 163 (223)
Q Consensus 162 ~~ 163 (223)
|.
T Consensus 378 Pi 379 (480)
T KOG2563|consen 378 PI 379 (480)
T ss_pred Cc
Confidence 65
No 257
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.61 E-value=19 Score=33.46 Aligned_cols=99 Identities=24% Similarity=0.345 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHH---hhhchhHHHHHHHHHHHHHHHHHhhh------------------hhHHHHHHH
Q 027462 91 LLAAFTSSLYISGLIASLFASTVT---RAFGRKASILVGGTAFLAGSAIGGAA------------------LNIYMLIFG 149 (223)
Q Consensus 91 ~~~~~~s~~~lg~~~~~~~~g~l~---dr~Grk~~~~~~~l~~~~~~l~~~~a------------------~~~~~l~v~ 149 (223)
..+...-...+|..++....+.+. +++||++.+.++.++..++.++.-+. +++....+.
T Consensus 280 ~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii 359 (461)
T KOG3098|consen 280 LIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALII 359 (461)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHH
Confidence 334444555567777777777777 45788999999999888877665543 134455666
Q ss_pred HHHHhhhhhhhhhhhh--hcccccccccccccchhhhcccCc
Q 027462 150 RVLLGVGIGFTNQCRY--ISQKWHHQNTEEHSPLASKYVLPL 189 (223)
Q Consensus 150 r~l~G~g~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 189 (223)
-++.|++.+.....++ +....+++|..++++...-.+++.
T Consensus 360 ~~l~G~~D~~~~t~~~~ii~~~~~~~~~~~fsi~kfyq~~~s 401 (461)
T KOG3098|consen 360 GFLLGFGDACFNTQRYVIIALLYPDDRAQAFSLFKFYQSVAS 401 (461)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 7788888887776655 555556667767666555444444
No 258
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=73.99 E-value=25 Score=32.78 Aligned_cols=113 Identities=7% Similarity=0.001 Sum_probs=70.4
Q ss_pred ChhHHHHHHHHHHHHHHHH-HHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh--h--hH-------------------
Q 027462 88 DSQLLAAFTSSLYISGLIA-SLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA--L--NI------------------- 143 (223)
Q Consensus 88 s~~~~~~~~s~~~lg~~~~-~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a--~--~~------------------- 143 (223)
+.+...|+-+...+-..+. .++.+++.+|++|++.+.+....+....++.++. + ..
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 4578889888887766666 8999999999999999988877777666555543 1 00
Q ss_pred --------HHHHHHHHHHhhhhhhhhhhh---hhcccccc-cccccccchhhhcccCccchhhhhhhcc
Q 027462 144 --------YMLIFGRVLLGVGIGFTNQCR---YISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITA 200 (223)
Q Consensus 144 --------~~l~v~r~l~G~g~g~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
+...+.-....+-........ ..++.++. +..|.+++++.+..+|.++++.+..-+.
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000001111011111101 14455544 5889999999999999999887654433
No 259
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.36 E-value=15 Score=27.20 Aligned_cols=39 Identities=23% Similarity=0.083 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHhHHhhh-chhHHHHHHHH
Q 027462 90 QLLAAFTSSLYISGLIASLFASTVTRAF-GRKASILVGGT 128 (223)
Q Consensus 90 ~~~~~~~s~~~lg~~~~~~~~g~l~dr~-Grk~~~~~~~l 128 (223)
.....-.+.=+++..+.....||+.||| |.++..+|.++
T Consensus 42 ~~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~l 81 (116)
T COG5336 42 YAQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFL 81 (116)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 3344455666777777778889999997 55555444443
No 260
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=71.95 E-value=12 Score=33.64 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=40.6
Q ss_pred HHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 027462 104 LIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 104 ~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~ 163 (223)
...+++.+.+..++|.|+.+.++....... +..-+=+.+..++..-...|++.+.....
T Consensus 72 ~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~S 130 (390)
T KOG3097|consen 72 IDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWAS 130 (390)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhcccccccccc
Confidence 444455558889999999998777655431 22233467788888888999887766553
No 261
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=68.00 E-value=31 Score=31.84 Aligned_cols=63 Identities=21% Similarity=0.290 Sum_probs=34.0
Q ss_pred HHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHh----
Q 027462 40 AATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTR---- 115 (223)
Q Consensus 40 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~d---- 115 (223)
+...+++.|.-.+..+ ++|-+++.= +.|.+.++...-.+.- .--.++++++.|
T Consensus 36 Ll~LYllQGiP~GL~~---~iP~lL~ak------------------~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~ 92 (510)
T KOG3574|consen 36 LLFLYLLQGIPLGLIG---AIPLLLQAK------------------GVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYS 92 (510)
T ss_pred HHHHHHHcCCchhHhh---hhHHHhcCC------------------CcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHH
Confidence 3344556677766654 346666522 1356655544322221 112456666667
Q ss_pred -hhchhHHHHH
Q 027462 116 -AFGRKASILV 125 (223)
Q Consensus 116 -r~Grk~~~~~ 125 (223)
|+|||+.-++
T Consensus 93 k~~GrrksWvv 103 (510)
T KOG3574|consen 93 KRFGRRKSWVV 103 (510)
T ss_pred Hhhccccceee
Confidence 9999876543
No 262
>PRK11469 hypothetical protein; Provisional
Probab=64.93 E-value=71 Score=25.88 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=20.3
Q ss_pred HHHHHhHHhHHhhhchhHHHHHHHHHHHHHH
Q 027462 104 LIASLFASTVTRAFGRKASILVGGTAFLAGS 134 (223)
Q Consensus 104 ~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~ 134 (223)
..+..++.++.+++|+|.-++-+.++..++.
T Consensus 149 ~~G~~lG~~~g~~~g~~a~~lgG~iLI~iGi 179 (188)
T PRK11469 149 TLGMMVGRFIGSIIGKKAEILGGLVLIGIGV 179 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455556677888887777777766664
No 263
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=63.60 E-value=35 Score=31.92 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=21.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhHHhHHhhh
Q 027462 88 DSQLLAAFTSSLYISGLIASLFASTVTRAF 117 (223)
Q Consensus 88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~ 117 (223)
+..+..++......+..+|.+++|.+.|++
T Consensus 281 ~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~ 310 (493)
T KOG1330|consen 281 DHNATLIFGGVTCAGGSLGVLFGGIISDKL 310 (493)
T ss_pred ccccchhhhhHHHhhchhhheehHHHHHHH
Confidence 344445566667778888888889999884
No 264
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=57.94 E-value=73 Score=30.10 Aligned_cols=70 Identities=20% Similarity=0.096 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHhHHhHHhhhchh--HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 027462 94 AFTSSLYISGLIASLFASTVTRAFGRK--ASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 94 ~~~s~~~lg~~~~~~~~g~l~dr~Grk--~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~ 163 (223)
..-....+...+..+..|++..++.+- ..+-+..++.....++++..++++...++-++.+....+..+.
T Consensus 302 ~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~fliti 373 (511)
T TIGR00806 302 AVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPI 373 (511)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 344555566667788888887766542 3333333344444556667788877777777776666665554
No 265
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=55.33 E-value=49 Score=28.50 Aligned_cols=97 Identities=9% Similarity=0.090 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHhh-hchhHHHH----HHHHHHHHHHHHHh--hh----hhHHHHHHHHHHHhhh-hhhh
Q 027462 93 AAFTSSLYISGLIASLFASTVTRA-FGRKASIL----VGGTAFLAGSAIGG--AA----LNIYMLIFGRVLLGVG-IGFT 160 (223)
Q Consensus 93 ~~~~s~~~lg~~~~~~~~g~l~dr-~Grk~~~~----~~~l~~~~~~l~~~--~a----~~~~~l~v~r~l~G~g-~g~~ 160 (223)
....-.+..|.++|.+..|++... +.||+-+. .+.+...+. .+++ .. .+...+.+.-++.|++ .|.-
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~-~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ 222 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLS-IVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ 222 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence 444556667777888888888754 45554433 122222222 2222 11 1345566666677654 3333
Q ss_pred hhhhhhccccccc-ccccccchhhhcccCcc
Q 027462 161 NQCRYISQKWHHQ-NTEEHSPLASKYVLPLV 190 (223)
Q Consensus 161 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 190 (223)
....+.+.-+++. +.+.==..+-+|++|-+
T Consensus 223 ~ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~ 253 (267)
T PF07672_consen 223 GVILNLPHEYKGYNPKKIGIQFGLIWGFGYI 253 (267)
T ss_pred HHHhcChhhhcCCCcceehhHHHHHHHHHHH
Confidence 3333445555444 23333334445555544
No 266
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=54.80 E-value=1.7e+02 Score=26.82 Aligned_cols=73 Identities=18% Similarity=0.112 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 027462 91 LLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGG--TAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 91 ~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~--l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~ 163 (223)
--|.+-+...+...++.+..|++..++++-.-+.++. ++.....++++..++++...++-++.+...-...+.
T Consensus 286 YNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTi 360 (412)
T PF01770_consen 286 YNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITI 360 (412)
T ss_pred cchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777788888899999877776643333333 333344455666677776666666655554444443
No 267
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=52.17 E-value=27 Score=32.65 Aligned_cols=71 Identities=23% Similarity=0.191 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 027462 93 AAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 93 ~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~ 163 (223)
.|=..++.+...+.+.+.-++.+|+|-|+.+..+...+.++..+.++.++..+..+.+...|+-.+....+
T Consensus 335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~ 405 (498)
T KOG0637|consen 335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTV 405 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcc
Confidence 45556666777888899999999999777777777767888888888888888888888888655555554
No 268
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=42.80 E-value=2e+02 Score=26.41 Aligned_cols=72 Identities=7% Similarity=-0.080 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHhhhchh-HHHHHHHHHHHHH---HHHHhhh---------hhHHHHHHHHHHHhhhh
Q 027462 91 LLAAFTSSLYISGLIASLFASTVTRAFGRK-ASILVGGTAFLAG---SAIGGAA---------LNIYMLIFGRVLLGVGI 157 (223)
Q Consensus 91 ~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk-~~~~~~~l~~~~~---~l~~~~a---------~~~~~l~v~r~l~G~g~ 157 (223)
..-.....++++=.+|..+..+.. .-++| +.+.+..++-.+. .++|... ++-...++..++.|+..
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn 386 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN 386 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence 334456667777777777554321 11222 1333333333332 2333222 23345566688888888
Q ss_pred hhhhhh
Q 027462 158 GFTNQC 163 (223)
Q Consensus 158 g~~~~~ 163 (223)
|-....
T Consensus 387 Gy~~s~ 392 (437)
T TIGR00939 387 GYLGSL 392 (437)
T ss_pred hHHHHH
Confidence 877766
No 269
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=42.14 E-value=40 Score=29.68 Aligned_cols=73 Identities=15% Similarity=0.190 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh---h------hHHHHHHHHHHHhhhhhhhhhhhh--hcccc----cccccccccchhhhc
Q 027462 121 ASILVGGTAFLAGSAIGGAA---L------NIYMLIFGRVLLGVGIGFTNQCRY--ISQKW----HHQNTEEHSPLASKY 185 (223)
Q Consensus 121 ~~~~~~~l~~~~~~l~~~~a---~------~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~----~~~~~~~~~~~~~~~ 185 (223)
+.++++.++..+|.++..++ . ....++++-++.++|.|+.=+... ..+-+ +++|...|+.+-.+-
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 45677888888888774443 1 225678888889999999888753 22222 222455555555555
Q ss_pred ccCccchh
Q 027462 186 VLPLVSYP 193 (223)
Q Consensus 186 ~~~~~~~~ 193 (223)
-+|+.+++
T Consensus 82 n~G~~~~~ 89 (372)
T PF00854_consen 82 NIGSLFSP 89 (372)
T ss_dssp HHHHHHHH
T ss_pred hhhhHhhc
Confidence 55555444
No 270
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=41.18 E-value=1.4e+02 Score=23.19 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhHHhHHhhhchhH
Q 027462 96 TSSLYISGLIASLFASTVTRAFGRKA 121 (223)
Q Consensus 96 ~s~~~lg~~~~~~~~g~l~dr~Grk~ 121 (223)
+.-+.+|..+++.+.|++.+|..+++
T Consensus 59 TgGyl~gf~~~a~i~g~~~~~~~~~~ 84 (148)
T PF02632_consen 59 TGGYLLGFPLAALIIGLLAERLKRSR 84 (148)
T ss_pred CChHHHHHHHHHHHHHHHHHhccccc
Confidence 45677889999999999999987763
No 271
>COG4769 Predicted membrane protein [Function unknown]
Probab=40.55 E-value=50 Score=26.47 Aligned_cols=44 Identities=27% Similarity=0.281 Sum_probs=23.8
Q ss_pred HHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 027462 104 LIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLL 153 (223)
Q Consensus 104 ~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~ 153 (223)
.+.+.+.-++..++|+|.+-.++... +.++.+|..++++.+++.
T Consensus 87 ~i~S~L~m~~l~~f~~k~~S~lgiS~------mGaF~hNl~QLivas~Lv 130 (181)
T COG4769 87 AILSTLFMYFLYQFGPKYLSLLGISV------MGAFTHNLGQLIVASFLV 130 (181)
T ss_pred HHHHHHHHHHHHHcCCceEeeeehhh------HHHHHHhHHHHHHHHHHH
Confidence 33344555777889988764444332 224445555555555444
No 272
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=40.31 E-value=1.3e+02 Score=24.49 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhHHhHHhhhch
Q 027462 96 TSSLYISGLIASLFASTVTRAFGR 119 (223)
Q Consensus 96 ~s~~~lg~~~~~~~~g~l~dr~Gr 119 (223)
+.-+.++..+++++.|++.||.-+
T Consensus 88 TgGyL~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 88 TGGYLIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhc
Confidence 356778889999999999999975
No 273
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=39.52 E-value=2.2e+02 Score=26.79 Aligned_cols=52 Identities=10% Similarity=0.099 Sum_probs=38.8
Q ss_pred ChhHHHHHHHHHHH-HHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh
Q 027462 88 DSQLLAAFTSSLYI-SGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA 139 (223)
Q Consensus 88 s~~~~~~~~s~~~l-g~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~ 139 (223)
+++...++-....+ .+++...+..++.++++|.+++.+....+.....+.++
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~ 108 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAF 108 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777664444 67777888999999999999998887777665555543
No 274
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=38.99 E-value=1.6e+02 Score=21.73 Aligned_cols=57 Identities=14% Similarity=0.000 Sum_probs=40.2
Q ss_pred HHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHhhhhhhhhhh
Q 027462 107 SLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA-LNIYMLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 107 ~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a-~~~~~l~v~r~l~G~g~g~~~~~ 163 (223)
.-..-..+|.|.|+...+...+...++..+.+.+ ++.+.=+......|+|.......
T Consensus 17 ~~~~lK~s~gf~~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~ 74 (106)
T COG2076 17 GTTLLKYSDGFTRLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALV 74 (106)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence 3444577898988888887887777777766666 55666666667777777665555
No 275
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=38.82 E-value=3.1e+02 Score=25.29 Aligned_cols=42 Identities=7% Similarity=-0.046 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHH
Q 027462 92 LAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAG 133 (223)
Q Consensus 92 ~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~ 133 (223)
.+...-.-.+..++.++..|.+.||..|++++..+.+..-++
T Consensus 40 ~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~s 81 (432)
T PF06963_consen 40 VSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLS 81 (432)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHH
Confidence 344444455666778888899999999998887776665443
No 276
>KOG4085 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.99 E-value=2.2e+02 Score=22.28 Aligned_cols=18 Identities=11% Similarity=-0.073 Sum_probs=10.5
Q ss_pred HHhHHhhhchhHHHHHHH
Q 027462 110 ASTVTRAFGRKASILVGG 127 (223)
Q Consensus 110 ~g~l~dr~Grk~~~~~~~ 127 (223)
...++++..+|+...-..
T Consensus 87 ~n~iAekves~~lw~kA~ 104 (175)
T KOG4085|consen 87 ANTIAEKVESLRLWQKAV 104 (175)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345667777766554433
No 277
>PRK10692 hypothetical protein; Provisional
Probab=33.50 E-value=1.4e+02 Score=21.17 Aligned_cols=45 Identities=22% Similarity=0.195 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh-----------hhHHHHHHHHHHHhhhhhhhhhh
Q 027462 119 RKASILVGGTAFLAGSAIGGAA-----------LNIYMLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 119 rk~~~~~~~l~~~~~~l~~~~a-----------~~~~~l~v~r~l~G~g~g~~~~~ 163 (223)
||...+++.+++.++.+++... -+++.++.--.+.|+..|...-.
T Consensus 3 Rk~a~~~GN~lMglGmv~Mv~gigysi~~~i~~L~Lp~~~~~gal~~IFiGAllWL 58 (92)
T PRK10692 3 RKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQLNLPQFFAHGALLSIFVGALLWL 58 (92)
T ss_pred chhhHHHhhHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHhhHHHHHHHHHHHHH
Confidence 6667777777777665544321 24577777777888777765543
No 278
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=32.74 E-value=2.2e+02 Score=22.39 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHHHhhh
Q 027462 141 LNIYMLIFGRVLLGVG 156 (223)
Q Consensus 141 ~~~~~l~v~r~l~G~g 156 (223)
+++..+.+...+.|+|
T Consensus 95 P~~~~~~~S~~~Fg~g 110 (153)
T PF11947_consen 95 PPWAVLLVSLVFFGLG 110 (153)
T ss_pred CchHHHHHHHHHHHHH
Confidence 3444555555555544
No 279
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=31.14 E-value=3.8e+02 Score=25.36 Aligned_cols=53 Identities=11% Similarity=0.039 Sum_probs=43.6
Q ss_pred CChhHHHHHHHHHHH-HHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh
Q 027462 87 FDSQLLAAFTSSLYI-SGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA 139 (223)
Q Consensus 87 ~s~~~~~~~~s~~~l-g~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~ 139 (223)
..++...++-+...+ .+++..++..++.+++.|.+++.+.+..+....+++++
T Consensus 58 ~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~ 111 (509)
T COG3202 58 QGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAF 111 (509)
T ss_pred CcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888877 88999999999999999999988877777766666654
No 280
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=30.48 E-value=1.4e+02 Score=22.78 Aligned_cols=27 Identities=19% Similarity=-0.011 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHh-HHh
Q 027462 89 SQLLAAFTSSLYISGLIASLFAST-VTR 115 (223)
Q Consensus 89 ~~~~~~~~s~~~lg~~~~~~~~g~-l~d 115 (223)
...-.....+..+..+++..++|+ +.+
T Consensus 74 ~~~~qls~v~Nilvsv~~~~~~~~~~~~ 101 (142)
T PF11712_consen 74 SVKRQLSTVFNILVSVFAVFFAGWYWAG 101 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456667777888888888888 444
No 281
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=29.89 E-value=19 Score=31.26 Aligned_cols=68 Identities=10% Similarity=-0.015 Sum_probs=1.3
Q ss_pred HHHHHHHHHHHHHHhHHhHHhhh-chhHHHHHHHHHHHHH---HHHHhhh----------hhHHHHHHHHHHHhhhhhhh
Q 027462 95 FTSSLYISGLIASLFASTVTRAF-GRKASILVGGTAFLAG---SAIGGAA----------LNIYMLIFGRVLLGVGIGFT 160 (223)
Q Consensus 95 ~~s~~~lg~~~~~~~~g~l~dr~-Grk~~~~~~~l~~~~~---~l~~~~a----------~~~~~l~v~r~l~G~g~g~~ 160 (223)
....++++=.+|..+.++..=+- .+|+. .+..+.-.+. .+++... ++-.+.++..++.|+..|-.
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l-~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWL-WILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccH-HHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 45567788888888776543111 23433 3333333322 1222121 12245566677888888876
Q ss_pred hhh
Q 027462 161 NQC 163 (223)
Q Consensus 161 ~~~ 163 (223)
...
T Consensus 266 ~tl 268 (309)
T PF01733_consen 266 STL 268 (309)
T ss_dssp -HH
T ss_pred hhc
Confidence 665
No 282
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=28.70 E-value=3.3e+02 Score=22.28 Aligned_cols=25 Identities=12% Similarity=0.024 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHhhhhhhhhhcccc
Q 027462 30 TVFVVLSCIVAATGGLIFGFDIGIS 54 (223)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~i~ 54 (223)
.+-.+...+..++-++..|++.++.
T Consensus 128 ~~e~l~L~iAlSiDalavG~s~~~~ 152 (206)
T TIGR02840 128 GKEALLLGIALSLDAFGAGIGASLL 152 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666666666666665543
No 283
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=27.09 E-value=1.8e+02 Score=20.60 Aligned_cols=44 Identities=20% Similarity=0.220 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh-----------hhHHHHHHHHHHHhhhhhhhhh
Q 027462 119 RKASILVGGTAFLAGSAIGGAA-----------LNIYMLIFGRVLLGVGIGFTNQ 162 (223)
Q Consensus 119 rk~~~~~~~l~~~~~~l~~~~a-----------~~~~~l~v~r~l~G~g~g~~~~ 162 (223)
||...+++..++.++.+++... -+++.++..-.+.|+..|...-
T Consensus 3 Rk~a~~~GN~lMglGmv~Mv~gigysi~~~~~~L~Lp~~~~~gal~~IFiGAllW 57 (89)
T PF10762_consen 3 RKNAFLLGNVLMGLGMVVMVGGIGYSILSQIPQLGLPQFLAHGALFSIFIGALLW 57 (89)
T ss_pred chhhHHHhhHHHHHhHHHHHHhHHHHHHHhcccCCCcHHHHhhHHHHHHHHHHHH
Confidence 6667777777777665543321 2457777777777777776544
No 284
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=26.93 E-value=1.4e+02 Score=21.01 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhHHhHHhhhchh
Q 027462 98 SLYISGLIASLFASTVTRAFGRK 120 (223)
Q Consensus 98 ~~~lg~~~~~~~~g~l~dr~Grk 120 (223)
.......+.+++.|.+.||..||
T Consensus 83 ~~~~~~l~va~v~g~l~~~~r~~ 105 (105)
T PF13493_consen 83 ITFAVFLVVALVTGYLADRYRRQ 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 34455567788889999998654
No 285
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=25.92 E-value=2.6e+02 Score=20.30 Aligned_cols=29 Identities=3% Similarity=-0.151 Sum_probs=15.2
Q ss_pred HHHHHHHhHHhHHhh-hchhHHHHHHHHHH
Q 027462 102 SGLIASLFASTVTRA-FGRKASILVGGTAF 130 (223)
Q Consensus 102 g~~~~~~~~g~l~dr-~Grk~~~~~~~l~~ 130 (223)
...+.+.+.|.+.|+ ++.++.+.+.+++.
T Consensus 54 ~pil~G~~lG~WLD~~~~t~~~~tl~~lll 83 (100)
T TIGR02230 54 IPTLLGVAVGIWLDRHYPSPFSWTLTMLIV 83 (100)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Confidence 334444555555655 67666554444443
No 286
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.44 E-value=94 Score=23.11 Aligned_cols=33 Identities=27% Similarity=0.199 Sum_probs=26.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 027462 132 AGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR 164 (223)
Q Consensus 132 ~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~ 164 (223)
++.++--++.+-||.++.-.+.|+|.|.....+
T Consensus 62 iG~llD~~agTsPwglIv~lllGf~AG~lnv~R 94 (116)
T COG5336 62 IGWLLDKFAGTSPWGLIVFLLLGFGAGVLNVLR 94 (116)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 556666677777888888899999999887763
No 287
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=25.44 E-value=88 Score=29.42 Aligned_cols=36 Identities=8% Similarity=-0.022 Sum_probs=27.1
Q ss_pred ccccccc-ccccccchhhhcccCccchhhhhhhccCC
Q 027462 167 SQKWHHQ-NTEEHSPLASKYVLPLVSYPLIFSITAPK 202 (223)
Q Consensus 167 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 202 (223)
|.-...| .+++++.++..-+.+.+++|.+.++.+.-
T Consensus 414 SkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~ 450 (488)
T KOG2325|consen 414 SKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTL 450 (488)
T ss_pred HHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHh
Confidence 3344444 78888899998899999998887777653
No 288
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=23.38 E-value=1.6e+02 Score=21.43 Aligned_cols=23 Identities=17% Similarity=0.015 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHh
Q 027462 93 AAFTSSLYISGLIASLFASTVTR 115 (223)
Q Consensus 93 ~~~~s~~~lg~~~~~~~~g~l~d 115 (223)
.|......+|.+++..-.=.+.+
T Consensus 75 ~~tl~~lllGv~~G~~n~w~wi~ 97 (100)
T TIGR02230 75 SWTLTMLIVGVVIGCLNAWHWVS 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555566666666554434433
No 289
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.07 E-value=3.3e+02 Score=27.06 Aligned_cols=47 Identities=9% Similarity=0.106 Sum_probs=32.3
Q ss_pred CCChhHHHHHHHHHH-HHHHHHHHhHHhHHhhhc--hhHHHHHHHHHHHH
Q 027462 86 KFDSQLLAAFTSSLY-ISGLIASLFASTVTRAFG--RKASILVGGTAFLA 132 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~-lg~~~~~~~~g~l~dr~G--rk~~~~~~~l~~~~ 132 (223)
+++...+..+..... .+..+|.+++|++..|+- .|.......+...+
T Consensus 424 g~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l 473 (735)
T KOG3626|consen 424 GISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVL 473 (735)
T ss_pred CCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHH
Confidence 578888888875554 577888899999999874 34444444444433
No 290
>PF06596 PsbX: Photosystem II reaction centre X protein (PsbX); InterPro: IPR009518 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. The low molecular weight transmembrane protein PsbX found in PSII is associated with the oxygen-evolving complex. Its expression is light-regulated. PsbX appears to be involved in the regulation of the amount of PSII [], and may be involved in the binding or turnover of quinone molecules at the Qb (PsbA) site [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016020 membrane; PDB: 3ARC_x 3A0H_X 3A0B_X 3PRR_X 1S5L_x 4FBY_j 3PRQ_X 3KZI_X 3BZ2_X 3BZ1_X.
Probab=22.99 E-value=1.8e+02 Score=17.39 Aligned_cols=24 Identities=13% Similarity=-0.007 Sum_probs=11.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhHH
Q 027462 88 DSQLLAAFTSSLYISGLIASLFAS 111 (223)
Q Consensus 88 s~~~~~~~~s~~~lg~~~~~~~~g 111 (223)
+++..+.+.|...-+..+..++.+
T Consensus 2 TpSL~nfl~Sl~aG~~iVv~~i~~ 25 (39)
T PF06596_consen 2 TPSLSNFLLSLVAGAVIVVIPIAG 25 (39)
T ss_dssp -HHHHHHHHHHHHHH-HHHHHHHH
T ss_pred CHhHHHHHHHHHhhhhhhhhhhhh
Confidence 455566666666555344443333
No 291
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=22.39 E-value=3.9e+02 Score=24.53 Aligned_cols=60 Identities=22% Similarity=0.247 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHH--HHhhhhhHHHHHHHHHH
Q 027462 93 AAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSA--IGGAALNIYMLIFGRVL 152 (223)
Q Consensus 93 ~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l--~~~~a~~~~~l~v~r~l 152 (223)
|..-....+..+++.+..|.+.-.+.|..-++++..-...+.+ .++-.+++++..++-.+
T Consensus 274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvl 335 (433)
T KOG3810|consen 274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVL 335 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHH
Confidence 3344555667778889999999888776444444443333333 33334555444333333
No 292
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=21.79 E-value=2e+02 Score=23.20 Aligned_cols=90 Identities=10% Similarity=0.073 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhcccccc--ccc
Q 027462 98 SLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYISQKWHH--QNT 175 (223)
Q Consensus 98 ~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~~~~~~~~--~~~ 175 (223)
...+...++.++.-.+..|.+++.++.+..++..+..++.+- .+...+.-++.|+-.- ... -..++++ |..
T Consensus 38 ~p~i~al~~g~vyml~~~KV~K~G~~~i~~~i~gl~~~~~G~---~~~~~~~~ii~gliae--li~--~~g~Yks~~~~~ 110 (189)
T TIGR02185 38 SPGITAFLVGIIFFLMVAKVPKRGVIFIFGILLGLLFFLMGM---YWPMIISSIIGGLLAD--IIA--STGGYKNKRKVT 110 (189)
T ss_pred HHHHHHHHHhHHHhhhhhhcCCccHHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHH--HHH--HhCCcccHHHHH
Confidence 345566667777778889999998887777776654444333 2323333344443211 111 1234443 244
Q ss_pred ccccchhhhcccCccchhhh
Q 027462 176 EEHSPLASKYVLPLVSYPLI 195 (223)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~ 195 (223)
-++..+.+.|..|.++ |.+
T Consensus 111 ia~~~~~~~~~~g~~~-p~~ 129 (189)
T TIGR02185 111 IAYVLFFLLVAMGPIL-PIW 129 (189)
T ss_pred HHHHHHHHHHHHHHHH-HHH
Confidence 4555666677777764 443
No 293
>PRK02237 hypothetical protein; Provisional
Probab=20.87 E-value=2.6e+02 Score=20.67 Aligned_cols=49 Identities=14% Similarity=-0.012 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHh
Q 027462 90 QLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGG 138 (223)
Q Consensus 90 ~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~ 138 (223)
+..+-....+.-...+.+++.++..|+.-+-+-=.++..+..++..+..
T Consensus 56 ~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~ 104 (109)
T PRK02237 56 AAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIM 104 (109)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhe
Confidence 5578888899999999999999999988665555566666666654443
No 294
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=20.61 E-value=1.9e+02 Score=21.32 Aligned_cols=51 Identities=16% Similarity=0.021 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhh
Q 027462 89 SQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGA 139 (223)
Q Consensus 89 ~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~ 139 (223)
+...+-....+.-...+.+++.++..|+.-+-+-=.++..+..++..+..+
T Consensus 53 p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 53 PAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred cccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEe
Confidence 466777888888889999999999999987655556666666666554433
No 295
>COG0387 ChaA Ca2+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=20.37 E-value=6.5e+02 Score=22.81 Aligned_cols=19 Identities=11% Similarity=0.135 Sum_probs=8.9
Q ss_pred HHhhhchhHHHHHHHHHHH
Q 027462 113 VTRAFGRKASILVGGTAFL 131 (223)
Q Consensus 113 l~dr~Grk~~~~~~~l~~~ 131 (223)
+.||..+-.-+..|..+..
T Consensus 280 ~~~~mqls~nia~Gsalq~ 298 (368)
T COG0387 280 LNNRMQLSMNIAMGSALQT 298 (368)
T ss_pred HhccHHHHHHHHHHHHHHH
Confidence 3455555444444444443
No 296
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=20.02 E-value=4.6e+02 Score=20.96 Aligned_cols=85 Identities=12% Similarity=0.086 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhhcccccc--ccc
Q 027462 98 SLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRYISQKWHH--QNT 175 (223)
Q Consensus 98 ~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~~~~~~~~--~~~ 175 (223)
...+...++.++.-.+..|.++|.++.+..++..+..++++.. +...+.-.+.|+-. .... -..++++ +..
T Consensus 36 ~~~i~ali~g~vyml~~~KV~K~G~~~i~~~i~gl~~~~~G~~---~~~~~~~iv~gliA--ElI~--~~g~y~~~~~~~ 108 (186)
T PF09605_consen 36 MPAIAALICGIVYMLMVAKVPKRGAFLIMGIIMGLIFFLMGHG---WPMLIVCIVGGLIA--ELIL--KKGGYKSKKRNT 108 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHH--HHHH--HhCCCCcHHHHH
Confidence 3445566677777778899999998888777777655544432 22222223333211 1111 1223333 355
Q ss_pred ccccchhhhcccCcc
Q 027462 176 EEHSPLASKYVLPLV 190 (223)
Q Consensus 176 ~~~~~~~~~~~~~~~ 190 (223)
-+++..+..+. |..
T Consensus 109 iay~vf~~~~~-g~~ 122 (186)
T PF09605_consen 109 IAYAVFSLGYM-GPY 122 (186)
T ss_pred HHHHHHHHHHH-hhH
Confidence 56667777666 544
Done!