Query 027462
Match_columns 223
No_of_seqs 127 out of 2284
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 17:16:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027462.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027462hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.8 1.1E-18 3.7E-23 156.7 12.3 147 29-215 6-170 (491)
2 3o7q_A L-fucose-proton symport 99.6 3.8E-15 1.3E-19 131.3 9.5 137 39-195 30-172 (438)
3 1pw4_A Glycerol-3-phosphate tr 99.5 1.7E-14 5.8E-19 127.3 7.7 147 32-199 25-178 (451)
4 2gfp_A EMRD, multidrug resista 99.4 7.4E-13 2.5E-17 114.7 8.2 151 41-220 6-159 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.3 1.4E-11 4.9E-16 110.3 11.5 127 85-220 49-181 (491)
6 2xut_A Proton/peptide symporte 99.2 9.7E-11 3.3E-15 105.8 11.6 125 87-220 51-183 (524)
7 2cfq_A Lactose permease; trans 98.5 4.5E-08 1.5E-12 86.4 4.7 114 86-199 39-161 (417)
8 3o7q_A L-fucose-proton symport 98.5 5.5E-07 1.9E-11 78.7 11.2 112 86-199 291-404 (438)
9 1pw4_A Glycerol-3-phosphate tr 98.4 1.5E-06 5E-11 76.2 11.1 115 86-200 284-407 (451)
10 2cfq_A Lactose permease; trans 98.2 6.6E-06 2.3E-10 72.4 10.5 111 89-199 258-372 (417)
11 4aps_A DI-OR tripeptide H+ sym 98.2 2.4E-06 8.1E-11 76.1 7.5 112 88-199 317-445 (491)
12 4gc0_A D-xylose-proton symport 98.1 1E-05 3.5E-10 71.9 9.1 96 88-212 310-411 (491)
13 2gfp_A EMRD, multidrug resista 97.9 7.6E-06 2.6E-10 70.2 4.6 111 87-199 232-349 (375)
14 2xut_A Proton/peptide symporte 96.7 0.0019 6.4E-08 57.8 5.7 111 91-201 336-466 (524)
15 2g9p_A Antimicrobial peptide l 35.2 20 0.0007 18.0 1.5 14 109-122 2-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.78 E-value=1.1e-18 Score=156.66 Aligned_cols=147 Identities=21% Similarity=0.370 Sum_probs=121.3
Q ss_pred chHHHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHH
Q 027462 29 MTVFVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASL 108 (223)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~ 108 (223)
.++..+.++++++++.+++|||.++++.. +|.+.++|.... +...+.++++.+++.+++.+|.+++++
T Consensus 6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~--~~~~~~~~~~~~----------~~~~~~~~~~~g~~~s~~~~G~~iG~~ 73 (491)
T 4gc0_A 6 NSSYIFSITLVATLGGLLFGYDTAVISGT--VESLNTVFVAPQ----------NLSESAANSLLGFCVASALIGCIIGGA 73 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGGT--HHHHHHHHTGGG----------CCCHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCC----------CCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777788889999999999998865 478877775321 111123567889999999999999999
Q ss_pred hHHhHHhhhchhHHHHHHHHHHHHHHHHHh------------------hhhhHHHHHHHHHHHhhhhhhhhhhhhhcccc
Q 027462 109 FASTVTRAFGRKASILVGGTAFLAGSAIGG------------------AALNIYMLIFGRVLLGVGIGFTNQCRYISQKW 170 (223)
Q Consensus 109 ~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~------------------~a~~~~~l~v~r~l~G~g~g~~~~~~~~~~~~ 170 (223)
+.|+++||+|||++++++.+++.++.++++ +++++.+++++|+++|+|.|...+.
T Consensus 74 ~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~------- 146 (491)
T 4gc0_A 74 LGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASML------- 146 (491)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-------
Confidence 999999999999999999999999999888 4789999999999999999999998
Q ss_pred cccccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhh
Q 027462 171 HHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQ 215 (223)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~ 215 (223)
.+.+++|+.|++.|++..+..+..
T Consensus 147 ---------------------~~~~i~E~~p~~~rg~~~~~~~~~ 170 (491)
T 4gc0_A 147 ---------------------SPMYIAELAPAHIRGKLVSFNQFA 170 (491)
T ss_dssp ---------------------HHHHHHTTSCGGGHHHHHHHHHHH
T ss_pred ---------------------HHHHHHhhCCHHhhhhhHHhhhhh
Confidence 788888888888888777654333
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.58 E-value=3.8e-15 Score=131.25 Aligned_cols=137 Identities=12% Similarity=0.182 Sum_probs=104.9
Q ss_pred HHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhc
Q 027462 39 VAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFG 118 (223)
Q Consensus 39 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~G 118 (223)
.++...+..+++....++. +|.+.++++ +++.+.+++.+.+.++..++.++.|++.||+|
T Consensus 30 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~g------------------~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g 89 (438)
T 3o7q_A 30 LLCSLFFLWAVANNLNDIL--LPQFQQAFT------------------LTNFQAGLIQSAFYFGYFIIPIPAGILMKKLS 89 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHSC------------------CCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhHHHH--HHHHHHHcC------------------CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 3444556667776666544 377777774 69999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccch
Q 027462 119 RKASILVGGTAFLAGSAIG---GAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSY 192 (223)
Q Consensus 119 rk~~~~~~~l~~~~~~l~~---~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 192 (223)
||++++++.++..++.++. +++++++.+++.|++.|++.+...+... .++.+++ +|+++.+..+....+|.+++
T Consensus 90 ~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g 169 (438)
T 3o7q_A 90 YKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIA 169 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988 7889999999999999999999888732 3333332 24445555555555555544
Q ss_pred hhh
Q 027462 193 PLI 195 (223)
Q Consensus 193 ~~~ 195 (223)
|.+
T Consensus 170 ~~~ 172 (438)
T 3o7q_A 170 VVF 172 (438)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.51 E-value=1.7e-14 Score=127.34 Aligned_cols=147 Identities=12% Similarity=-0.028 Sum_probs=118.1
Q ss_pred HHHHHHHHHHhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHH
Q 027462 32 FVVLSCIVAATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFAS 111 (223)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g 111 (223)
..+.......++.+..+++...+++.. |.+.++ + .++.+.+++.+.+.++..++.++.|
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------------------~-~s~~~~g~~~~~~~~~~~~~~~~~G 83 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAM--PYLVEQ------------------G-FSRGDLGFALSGISIAYGFSKFIMG 83 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHH--HHTTSS------------------T-TCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH------------------h-ccHhHHHHHHHHHHHHHHHHHHhHH
Confidence 334455556666677777766654332 333322 2 4888999999999999999999999
Q ss_pred hHHhhhchhHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHhhhhhhhhhhhh--hcccccc-cccccccchhhh
Q 027462 112 TVTRAFGRKASILVGGTAFLAGSAIGGA----ALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASK 184 (223)
Q Consensus 112 ~l~dr~Grk~~~~~~~l~~~~~~l~~~~----a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~ 184 (223)
++.||+|||++++++.++..++.+++++ +++++.+++.|++.|++.+...+... +++.+++ +|+++++.....
T Consensus 84 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 163 (451)
T 1pw4_A 84 SVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCA 163 (451)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHH
Confidence 9999999999999999999999999999 88999999999999999998777653 6666654 499999999999
Q ss_pred cccCccchhhhhhhc
Q 027462 185 YVLPLVSYPLIFSIT 199 (223)
Q Consensus 185 ~~~~~~~~~~~~~~~ 199 (223)
..+|.+++|.+..-+
T Consensus 164 ~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 164 HNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988876543
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.38 E-value=7.4e-13 Score=114.69 Aligned_cols=151 Identities=15% Similarity=0.194 Sum_probs=121.9
Q ss_pred HhhhhhhhhhccccccccCcHHHHHhhcchhhhhcccccccccccCCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchh
Q 027462 41 ATGGLIFGFDIGISGGVTSMEPFLKKFFPEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRK 120 (223)
Q Consensus 41 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk 120 (223)
++..+..+++...+.+. +|.+.++++ .++++.+++.+...++..++.++.|++.||+|||
T Consensus 6 ~~~~~~~~~~~~~~~~~--~~~~~~~~g------------------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r 65 (375)
T 2gfp_A 6 VLLVAVGQMAQTIYIPA--IADMARDLN------------------VREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRR 65 (375)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHTTSS------------------STTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHhhh--hHHHHHHcC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 34445555666555433 366666553 6899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh--hccccc-ccccccccchhhhcccCccchhhhhh
Q 027462 121 ASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY--ISQKWH-HQNTEEHSPLASKYVLPLVSYPLIFS 197 (223)
Q Consensus 121 ~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (223)
+++.++.++..++.++.+++++++.+++.|++.|++.+...+... .++.++ ++|+++++..+....+|.+++|.+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 145 (375)
T 2gfp_A 66 PVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGG 145 (375)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999998777643 555554 46999999999999999999988766
Q ss_pred hccCCCCCcccccchhhhhhhhh
Q 027462 198 ITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 198 ~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
-+.. ..+||+.+.+
T Consensus 146 ~l~~---------~~~~~~~~~~ 159 (375)
T 2gfp_A 146 LLDT---------MWNWRACYLF 159 (375)
T ss_dssp HSSC---------HHHHHHHHHH
T ss_pred HHHH---------hccHHHHHHH
Confidence 5543 2468877654
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.29 E-value=1.4e-11 Score=110.27 Aligned_cols=127 Identities=13% Similarity=0.178 Sum_probs=104.6
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhHHhHHhh-hchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 027462 85 CKFDSQLLAAFTSSLYISGLIASLFASTVTRA-FGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQC 163 (223)
Q Consensus 85 ~~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr-~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~ 163 (223)
++++..+.+++.+.+.++..+++++.|++.|| +|||+++.++.++..++.++++++++++.+++.|++.|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 46799999999999999999999999999999 89999999999999999999999999999999999999999988776
Q ss_pred hh--hcccccc-c--ccccccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462 164 RY--ISQKWHH-Q--NTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 164 ~~--~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
.. +++.+++ + |..+++.......+|.+++|.+..-+.. ..+|+|.+.+
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---------~~g~~~~f~~ 181 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE---------AAGYHVAFSL 181 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HSCHHHHHHH
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh---------hhhHHHHHHH
Confidence 43 5555532 2 5667777778888888888776554432 2357777654
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.19 E-value=9.7e-11 Score=105.80 Aligned_cols=125 Identities=11% Similarity=0.080 Sum_probs=98.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhh-chhHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHhhhhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAF-GRKASILVGGTAFLAGSAIGGAAL-NIYMLIFGRVLLGVGIGFTNQCR 164 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~-Grk~~~~~~~l~~~~~~l~~~~a~-~~~~l~v~r~l~G~g~g~~~~~~ 164 (223)
+++.+.+++.+.+.++..++.++.|++.||+ |||+++.++.++..++.++.++++ ++..+++.|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 6899999999999999999999999999999 999999999999999999999998 99999999999999999887764
Q ss_pred h--hccccccc-cccc---ccchhhhcccCccchhhhhhhccCCCCCcccccchhhhhhhhh
Q 027462 165 Y--ISQKWHHQ-NTEE---HSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGESPWQWLLLL 220 (223)
Q Consensus 165 ~--~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~~~l 220 (223)
. +++.++++ |+++ ++.......+|.+++|.+..-+.. ..+|++.|.+
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~---------~~g~~~~f~~ 183 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK---------NFGAAVAFGI 183 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH---------TSCHHHHHHH
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------cccHHHHHHH
Confidence 3 55555443 5433 333666777777777764433321 2357766654
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.55 E-value=4.5e-08 Score=86.42 Aligned_cols=114 Identities=11% Similarity=0.046 Sum_probs=73.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHH---HHHhhhhhHH-HHHHHHHHHhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGS---AIGGAALNIY-MLIFGRVLLGVGIGFTN 161 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~---l~~~~a~~~~-~l~v~r~l~G~g~g~~~ 161 (223)
++++.+.+++.+...++..+++++.|+++||+|||++++++..+..+.. +...+++... .++..+.+.|++.|...
T Consensus 39 g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 118 (417)
T 2cfq_A 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF 118 (417)
T ss_dssp CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999998887765432 1112222211 23345555555544433
Q ss_pred hhhh-hcccc----cccccccccchhhhcccCccchhhhhhhc
Q 027462 162 QCRY-ISQKW----HHQNTEEHSPLASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 162 ~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
+... ..+.+ .+++.++++.......+|..++|.+..-.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l 161 (417)
T 2cfq_A 119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIM 161 (417)
T ss_dssp HTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 11122 22356666667667777777777655444
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.53 E-value=5.5e-07 Score=78.74 Aligned_cols=112 Identities=9% Similarity=-0.002 Sum_probs=81.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCRY 165 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~~ 165 (223)
+++..+.+++.+...++..++.++.+++.||+|||+.+.++.++..++.++..+.++...++. -++.|++.+...+...
T Consensus 291 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~ 369 (438)
T 3o7q_A 291 GMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LTLCSAFMSIQYPTIF 369 (438)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHTTHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999999988888887777766654443 3777777777766543
Q ss_pred --hcccccccccccccchhhhcccCccchhhhhhhc
Q 027462 166 --ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 166 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
..+...+++.++.+... ...+|..++|.+..-+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l 404 (438)
T 3o7q_A 370 SLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFV 404 (438)
T ss_dssp HHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHH
T ss_pred HHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHH
Confidence 34444444555555544 2336666666655443
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.42 E-value=1.5e-06 Score=76.17 Aligned_cols=115 Identities=10% Similarity=-0.080 Sum_probs=86.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhHHhHHhhh--chhHHHHHHHHHHH-HHHHHHhhh--hhHHHHHHHHHHHhhhhhhh
Q 027462 86 KFDSQLLAAFTSSLYISGLIASLFASTVTRAF--GRKASILVGGTAFL-AGSAIGGAA--LNIYMLIFGRVLLGVGIGFT 160 (223)
Q Consensus 86 ~~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~--Grk~~~~~~~l~~~-~~~l~~~~a--~~~~~l~v~r~l~G~g~g~~ 160 (223)
++++.+.+++.+...++..++.++.|++.||+ |||+.+.++.++.. ++.++..+. .+...+++..++.|++.+..
T Consensus 284 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 363 (451)
T 1pw4_A 284 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGP 363 (451)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhch
Confidence 57899999999999999999999999999999 99999888877766 666666655 35666777778888887776
Q ss_pred hhhhh--hccccccc-ccccccchhhhccc-Cccchhhhhhhcc
Q 027462 161 NQCRY--ISQKWHHQ-NTEEHSPLASKYVL-PLVSYPLIFSITA 200 (223)
Q Consensus 161 ~~~~~--~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 200 (223)
.+... ..+..+++ |+++++.......+ |..++|.+..-+.
T Consensus 364 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~ 407 (451)
T 1pw4_A 364 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 407 (451)
T ss_dssp HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66522 44555544 77777777777777 7777776554443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.22 E-value=6.6e-06 Score=72.40 Aligned_cols=111 Identities=13% Similarity=0.116 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhh--hh
Q 027462 89 SQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAALNIYMLIFGRVLLGVGIGFTNQCR--YI 166 (223)
Q Consensus 89 ~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a~~~~~l~v~r~l~G~g~g~~~~~~--~~ 166 (223)
....+++.+...++..++.++.+++.||+|||+++..+.++..++.++.++.++...+++..++.+++.+...+.. +.
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888889999999999999999999998888888777777777776777777667776655444332 25
Q ss_pred ccccccc-ccccccc-hhhhcccCccchhhhhhhc
Q 027462 167 SQKWHHQ-NTEEHSP-LASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 167 ~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~ 199 (223)
++.++++ |+++++. ++....+|..++|.+..-+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l 372 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM 372 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTH
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHH
Confidence 5555554 7777776 3666667776676655543
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.21 E-value=2.4e-06 Score=76.13 Aligned_cols=112 Identities=10% Similarity=-0.072 Sum_probs=76.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHH-----HHHHHHHHHHHHHhhhh---------hHHHHHHHHHHH
Q 027462 88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASIL-----VGGTAFLAGSAIGGAAL---------NIYMLIFGRVLL 153 (223)
Q Consensus 88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~-----~~~l~~~~~~l~~~~a~---------~~~~l~v~r~l~ 153 (223)
+....+++.+...++..++.++.+++.||+|||+... .+.++..++.++.++.. +...+++.-++.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (491)
T 4aps_A 317 SWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALV 396 (491)
T ss_dssp SSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHH
T ss_pred CccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHH
Confidence 3355667778888888999999999999999986554 66666666655555532 556677777888
Q ss_pred hhhhhhhhhhhh--hccccccc-ccccccchhhhcccCccchhhhhhhc
Q 027462 154 GVGIGFTNQCRY--ISQKWHHQ-NTEEHSPLASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 154 G~g~g~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
|++.+...+... ..+..+++ |+++.+.......+|..++|.+..-.
T Consensus 397 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~ 445 (491)
T 4aps_A 397 ILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLY 445 (491)
T ss_dssp HHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887666532 44455443 77777777777777777776654433
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.09 E-value=1e-05 Score=71.87 Aligned_cols=96 Identities=18% Similarity=0.197 Sum_probs=64.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHHHHHHHHHHhhh-----hhHHHH-HHHHHHHhhhhhhhh
Q 027462 88 DSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTAFLAGSAIGGAA-----LNIYML-IFGRVLLGVGIGFTN 161 (223)
Q Consensus 88 s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~~~~~~l~~~~a-----~~~~~l-~v~r~l~G~g~g~~~ 161 (223)
+............+...++.++.+++.||+|||+.++.+.....++.+..+.. ++...+ .+.-+..+++.+. .
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 388 (491)
T 4gc0_A 310 STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW-G 388 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTT-T
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHH-H
Confidence 55666666777778889999999999999999999998888887776655433 111111 1222222222222 2
Q ss_pred hhhhhcccccccccccccchhhhcccCccchhhhhhhccCCCCCcccccch
Q 027462 162 QCRYISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSITAPKRSRGAGAGES 212 (223)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~ 212 (223)
+. ...+.+|.+|.+.|+.++++.
T Consensus 389 ~~----------------------------~~~~~~E~fPt~~R~~~~g~~ 411 (491)
T 4gc0_A 389 PV----------------------------CWVLLSEIFPNAIRGKALAIA 411 (491)
T ss_dssp HH----------------------------HHHHHHHSSCTTTHHHHHHHH
T ss_pred HH----------------------------HHHHHHHhCCHhHHHHHHHHH
Confidence 33 456888999999998888764
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.91 E-value=7.6e-06 Score=70.23 Aligned_cols=111 Identities=12% Similarity=0.100 Sum_probs=74.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhHHhHHhhhchhHHHHHHHHH-HHHHHH--HHhh--hhhHHHHHHHHHHHhhhhhhhh
Q 027462 87 FDSQLLAAFTSSLYISGLIASLFASTVTRAFGRKASILVGGTA-FLAGSA--IGGA--ALNIYMLIFGRVLLGVGIGFTN 161 (223)
Q Consensus 87 ~s~~~~~~~~s~~~lg~~~~~~~~g~l~dr~Grk~~~~~~~l~-~~~~~l--~~~~--a~~~~~l~v~r~l~G~g~g~~~ 161 (223)
.++.+.+++.+...++..++.++.+++.||+|++. ..+..+ ..++.. .... .++...+++..++.|++.+...
T Consensus 232 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 309 (375)
T 2gfp_A 232 LSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLF 309 (375)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhh
Confidence 47888999999999999999999999999998732 233333 222222 1122 2355666677888888888776
Q ss_pred hhhh--hcccccccccccccchhhhcccCccchhhhhhhc
Q 027462 162 QCRY--ISQKWHHQNTEEHSPLASKYVLPLVSYPLIFSIT 199 (223)
Q Consensus 162 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (223)
+... ..+..+++|+++.+.......+|..++|.+...+
T Consensus 310 ~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l 349 (375)
T 2gfp_A 310 PLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAML 349 (375)
T ss_dssp STTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHH
T ss_pred HHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6543 4444444577777777777777777666644433
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=96.70 E-value=0.0019 Score=57.76 Aligned_cols=111 Identities=13% Similarity=-0.022 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHH----hhhch----hHHHHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHH
Q 027462 91 LLAAFTSSLYISGLIASLFASTVT----RAFGR----KASILVGGTAFLAGSAIGGAA---------LNIYMLIFGRVLL 153 (223)
Q Consensus 91 ~~~~~~s~~~lg~~~~~~~~g~l~----dr~Gr----k~~~~~~~l~~~~~~l~~~~a---------~~~~~l~v~r~l~ 153 (223)
..+++.+...++..++.++.+++. +|.|+ ++.+.++.++..++.++.++. .+..++++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 345555655566667777776654 55443 245666777777776666553 2556677778888
Q ss_pred hhhhhhhhhhhh--hcccccc-cccccccchhhhcccCccchhhhhhhccC
Q 027462 154 GVGIGFTNQCRY--ISQKWHH-QNTEEHSPLASKYVLPLVSYPLIFSITAP 201 (223)
Q Consensus 154 G~g~g~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (223)
|++.+...+... ..+..++ +|+++++.......+|..++|.+..-...
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 988887776543 4445544 48888888888888888888877665554
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=35.19 E-value=20 Score=18.01 Aligned_cols=14 Identities=36% Similarity=0.615 Sum_probs=11.1
Q ss_pred hHHhHHhhhchhHH
Q 027462 109 FASTVTRAFGRKAS 122 (223)
Q Consensus 109 ~~g~l~dr~Grk~~ 122 (223)
+.|.+..+||||..
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 45788999999864
Done!