Query 027463
Match_columns 223
No_of_seqs 149 out of 1336
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 10:17:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027463.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027463hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2839 Diadenosine and diphos 99.9 3.1E-25 6.7E-30 170.5 11.8 140 15-171 1-144 (145)
2 cd04666 Nudix_Hydrolase_9 Memb 99.9 2.5E-22 5.5E-27 153.7 14.2 121 23-158 1-121 (122)
3 cd03673 Ap6A_hydrolase Diadeno 99.9 5.7E-22 1.2E-26 151.6 15.5 129 22-166 1-130 (131)
4 cd03428 Ap4A_hydrolase_human_l 99.9 1.8E-20 3.8E-25 143.7 14.0 127 22-165 2-128 (130)
5 PRK09438 nudB dihydroneopterin 99.8 1.9E-19 4.2E-24 141.5 14.8 136 21-170 6-147 (148)
6 cd04684 Nudix_Hydrolase_25 Con 99.8 3.1E-19 6.7E-24 135.9 14.9 111 48-162 12-127 (128)
7 cd04695 Nudix_Hydrolase_36 Mem 99.8 2.6E-19 5.6E-24 138.1 13.6 123 25-166 2-128 (131)
8 cd03674 Nudix_Hydrolase_1 Memb 99.8 4.7E-19 1E-23 138.0 14.8 131 22-166 2-137 (138)
9 cd04679 Nudix_Hydrolase_20 Mem 99.8 3.6E-19 7.7E-24 135.9 12.7 113 21-154 1-117 (125)
10 cd04680 Nudix_Hydrolase_21 Mem 99.8 3.3E-19 7.1E-24 134.6 12.2 104 48-162 13-117 (120)
11 cd03430 GDPMH GDP-mannose glyc 99.8 1.9E-18 4E-23 135.8 15.3 119 20-152 10-132 (144)
12 cd04700 DR1025_like DR1025 fro 99.8 1.9E-18 4.1E-23 135.4 13.5 117 21-159 12-132 (142)
13 PRK15434 GDP-mannose mannosyl 99.8 1.8E-18 4E-23 138.1 13.6 123 19-155 14-140 (159)
14 cd04676 Nudix_Hydrolase_17 Mem 99.8 2.8E-18 6.1E-23 130.3 13.4 127 22-163 2-128 (129)
15 cd03675 Nudix_Hydrolase_2 Cont 99.8 6E-18 1.3E-22 130.5 15.3 111 48-166 12-128 (134)
16 cd04673 Nudix_Hydrolase_15 Mem 99.8 3.5E-18 7.5E-23 129.2 13.7 106 48-158 12-120 (122)
17 PF00293 NUDIX: NUDIX domain; 99.8 2.7E-18 5.8E-23 131.1 13.3 124 22-165 2-132 (134)
18 cd04681 Nudix_Hydrolase_22 Mem 99.8 1.7E-18 3.6E-23 132.8 11.9 112 48-165 14-129 (130)
19 cd04696 Nudix_Hydrolase_37 Mem 99.8 6.2E-18 1.3E-22 129.1 14.6 120 23-161 3-123 (125)
20 cd04687 Nudix_Hydrolase_28 Mem 99.8 5.6E-18 1.2E-22 129.9 14.2 119 22-156 1-125 (128)
21 cd03427 MTH1 MutT homolog-1 (M 99.8 4E-18 8.6E-23 131.8 13.0 110 48-166 13-125 (137)
22 PLN02325 nudix hydrolase 99.8 3.9E-18 8.5E-23 134.1 13.1 118 19-156 6-129 (144)
23 cd04672 Nudix_Hydrolase_14 Mem 99.8 4.8E-18 1E-22 129.4 13.0 119 21-159 1-119 (123)
24 cd04664 Nudix_Hydrolase_7 Memb 99.8 3.2E-18 6.9E-23 131.3 12.1 121 24-162 3-128 (129)
25 cd03672 Dcp2p mRNA decapping e 99.8 8.4E-18 1.8E-22 132.4 14.6 109 24-155 3-114 (145)
26 cd03671 Ap4A_hydrolase_plant_l 99.8 1.4E-17 2.9E-22 131.1 15.1 129 21-164 2-142 (147)
27 cd04677 Nudix_Hydrolase_18 Mem 99.8 5.2E-18 1.1E-22 130.1 12.2 102 48-155 20-125 (132)
28 cd04688 Nudix_Hydrolase_29 Mem 99.8 1.1E-17 2.4E-22 127.8 13.9 103 48-156 13-122 (126)
29 cd04689 Nudix_Hydrolase_30 Mem 99.8 1.1E-17 2.3E-22 127.7 13.7 97 48-150 13-112 (125)
30 cd04678 Nudix_Hydrolase_19 Mem 99.8 7.9E-18 1.7E-22 129.0 12.8 111 21-152 1-117 (129)
31 cd04670 Nudix_Hydrolase_12 Mem 99.8 1.1E-17 2.5E-22 127.9 13.4 112 23-157 3-118 (127)
32 cd04690 Nudix_Hydrolase_31 Mem 99.8 5.7E-18 1.2E-22 127.6 11.1 100 48-156 13-114 (118)
33 COG1051 ADP-ribose pyrophospha 99.8 1E-17 2.2E-22 131.9 12.2 113 19-153 7-123 (145)
34 cd04511 Nudix_Hydrolase_4 Memb 99.8 9.8E-18 2.1E-22 129.1 11.9 112 18-156 9-124 (130)
35 cd04667 Nudix_Hydrolase_10 Mem 99.7 2E-17 4.4E-22 124.0 12.0 98 48-160 12-109 (112)
36 cd04686 Nudix_Hydrolase_27 Mem 99.7 4E-17 8.6E-22 126.1 13.3 111 24-152 2-119 (131)
37 cd04669 Nudix_Hydrolase_11 Mem 99.7 3.7E-17 8E-22 124.5 12.8 105 25-156 3-118 (121)
38 PRK15472 nucleoside triphospha 99.7 6E-17 1.3E-21 126.3 13.4 115 48-165 16-138 (141)
39 cd03424 ADPRase_NUDT5 ADP-ribo 99.7 4.2E-17 9.2E-22 126.2 12.4 112 23-157 3-120 (137)
40 PRK10546 pyrimidine (deoxy)nuc 99.7 1.1E-16 2.4E-21 123.4 14.4 110 48-169 16-129 (135)
41 cd04661 MRP_L46 Mitochondrial 99.7 6.5E-17 1.4E-21 125.2 12.7 108 46-156 12-124 (132)
42 cd04682 Nudix_Hydrolase_23 Mem 99.7 6.2E-17 1.3E-21 123.1 12.1 97 48-154 13-116 (122)
43 cd04683 Nudix_Hydrolase_24 Mem 99.7 5.8E-17 1.2E-21 122.6 11.7 98 48-153 12-115 (120)
44 PRK00714 RNA pyrophosphohydrol 99.7 1.8E-16 3.9E-21 126.2 14.7 134 20-169 6-151 (156)
45 cd03429 NADH_pyrophosphatase N 99.7 1E-16 2.2E-21 123.9 12.2 94 47-152 12-107 (131)
46 cd04691 Nudix_Hydrolase_32 Mem 99.7 8.7E-17 1.9E-21 121.8 11.7 94 48-154 12-110 (117)
47 cd04671 Nudix_Hydrolase_13 Mem 99.7 6.5E-17 1.4E-21 123.8 10.7 104 24-153 2-111 (123)
48 cd03426 CoAse Coenzyme A pyrop 99.7 1.1E-16 2.4E-21 127.5 11.3 110 23-152 2-118 (157)
49 cd04697 Nudix_Hydrolase_38 Mem 99.7 2.3E-16 5E-21 120.9 11.2 110 24-157 2-117 (126)
50 PRK05379 bifunctional nicotina 99.7 1.5E-15 3.2E-20 135.1 16.0 127 20-166 201-338 (340)
51 cd02885 IPP_Isomerase Isopente 99.7 8.1E-16 1.8E-20 123.4 12.9 115 22-155 30-151 (165)
52 cd04693 Nudix_Hydrolase_34 Mem 99.7 4.3E-16 9.3E-21 119.2 10.7 98 48-156 13-117 (127)
53 cd04662 Nudix_Hydrolase_5 Memb 99.7 5.3E-16 1.2E-20 118.9 10.7 58 23-90 1-65 (126)
54 PRK15393 NUDIX hydrolase YfcD; 99.7 1.8E-15 4E-20 123.1 14.2 130 19-171 33-170 (180)
55 PRK10776 nucleoside triphospha 99.7 2.1E-15 4.6E-20 114.7 13.6 107 47-165 16-126 (129)
56 cd04692 Nudix_Hydrolase_33 Mem 99.7 1.4E-15 3E-20 119.2 12.3 119 22-154 2-129 (144)
57 PRK00241 nudC NADH pyrophospha 99.7 1.2E-15 2.6E-20 130.6 12.5 101 47-159 143-245 (256)
58 PRK11762 nudE adenosine nucleo 99.6 4.2E-15 9.2E-20 121.4 13.1 105 47-161 59-168 (185)
59 cd03425 MutT_pyrophosphohydrol 99.6 8.3E-15 1.8E-19 110.1 13.7 106 47-164 13-122 (124)
60 cd04699 Nudix_Hydrolase_39 Mem 99.6 5.2E-15 1.1E-19 112.6 12.2 97 48-153 14-115 (129)
61 cd04665 Nudix_Hydrolase_8 Memb 99.6 3.3E-15 7.2E-20 113.7 11.0 91 48-149 12-102 (118)
62 PRK03759 isopentenyl-diphospha 99.6 5.6E-15 1.2E-19 120.6 13.0 118 20-155 32-155 (184)
63 KOG3084 NADH pyrophosphatase I 99.6 2.3E-17 5E-22 141.3 -1.2 128 48-218 201-333 (345)
64 cd04694 Nudix_Hydrolase_35 Mem 99.6 6.3E-15 1.4E-19 115.8 12.2 109 47-156 13-135 (143)
65 TIGR00586 mutt mutator mutT pr 99.6 1.2E-14 2.6E-19 110.7 13.4 104 48-163 17-124 (128)
66 cd02883 Nudix_Hydrolase Nudix 99.6 4.8E-15 1E-19 110.4 10.7 99 48-154 13-114 (123)
67 TIGR00052 nudix-type nucleosid 99.6 7.3E-15 1.6E-19 120.1 11.2 116 24-161 46-174 (185)
68 PRK10729 nudF ADP-ribose pyrop 99.6 1.7E-14 3.7E-19 119.5 13.3 116 24-161 51-180 (202)
69 cd04685 Nudix_Hydrolase_26 Mem 99.6 2.2E-14 4.7E-19 111.4 12.0 108 24-152 2-123 (133)
70 cd03670 ADPRase_NUDT9 ADP-ribo 99.6 5.9E-14 1.3E-18 114.6 14.5 143 20-167 18-184 (186)
71 TIGR02150 IPP_isom_1 isopenten 99.6 3.1E-14 6.7E-19 113.5 11.8 115 20-156 25-146 (158)
72 TIGR02705 nudix_YtkD nucleosid 99.5 2.2E-13 4.8E-18 108.3 12.8 94 48-155 36-130 (156)
73 PRK10707 putative NUDIX hydrol 99.5 2.3E-13 5E-18 111.7 13.2 113 21-154 29-148 (190)
74 PRK15009 GDP-mannose pyrophosp 99.5 3.1E-13 6.7E-18 111.1 13.1 116 23-161 46-175 (191)
75 cd04663 Nudix_Hydrolase_6 Memb 99.5 1.7E-13 3.8E-18 105.2 10.4 44 46-90 13-56 (126)
76 cd03676 Nudix_hydrolase_3 Memb 99.5 4.4E-13 9.6E-18 108.9 12.0 109 46-159 47-165 (180)
77 cd04674 Nudix_Hydrolase_16 Mem 99.5 9.5E-13 2.1E-17 100.1 12.4 58 20-91 2-62 (118)
78 PRK08999 hypothetical protein; 99.5 9.6E-13 2.1E-17 115.5 14.0 106 48-165 18-127 (312)
79 PLN02709 nudix hydrolase 99.4 2.4E-12 5.2E-17 107.5 10.7 117 20-152 30-155 (222)
80 COG2816 NPY1 NTP pyrophosphohy 99.3 9.9E-13 2.1E-17 112.4 5.3 95 48-154 156-252 (279)
81 COG0494 MutT NTP pyrophosphohy 99.3 4.6E-11 9.9E-16 90.9 12.1 105 47-156 24-138 (161)
82 PLN03143 nudix hydrolase; Prov 99.3 1.3E-10 2.8E-15 101.0 14.8 103 46-156 142-269 (291)
83 PLN02552 isopentenyl-diphospha 99.2 2.8E-10 6.2E-15 96.8 14.7 135 20-168 54-226 (247)
84 COG4119 Predicted NTP pyrophos 99.2 2.2E-10 4.7E-15 86.6 10.0 60 21-90 2-68 (161)
85 PLN02791 Nudix hydrolase homol 99.0 6.7E-09 1.4E-13 100.4 15.2 105 47-154 45-160 (770)
86 KOG3041 Nucleoside diphosphate 98.9 1.9E-08 4.1E-13 81.6 11.8 103 45-153 86-195 (225)
87 KOG3069 Peroxisomal NUDIX hydr 98.9 1.7E-08 3.6E-13 84.0 9.3 116 20-151 40-162 (246)
88 cd03431 DNA_Glycosylase_C DNA 98.8 1.8E-07 3.9E-12 69.6 13.3 97 48-162 15-115 (118)
89 COG1443 Idi Isopentenyldiphosp 98.7 7.9E-08 1.7E-12 76.7 7.5 117 21-156 32-157 (185)
90 PLN02839 nudix hydrolase 98.5 1.3E-06 2.7E-11 77.9 9.9 126 46-176 217-353 (372)
91 KOG4195 Transient receptor pot 98.4 5.2E-07 1.1E-11 74.4 5.7 70 14-85 106-177 (275)
92 KOG0648 Predicted NUDIX hydrol 98.4 1.9E-07 4E-12 80.6 2.8 99 47-153 127-232 (295)
93 PF14815 NUDIX_4: NUDIX domain 97.9 7E-05 1.5E-09 55.9 8.4 101 47-162 9-113 (114)
94 KOG2937 Decapping enzyme compl 97.4 3.3E-05 7.2E-10 67.4 -0.3 104 23-149 83-189 (348)
95 PF13869 NUDIX_2: Nucleotide h 97.3 0.00025 5.4E-09 57.8 3.9 63 15-88 35-98 (188)
96 KOG0142 Isopentenyl pyrophosph 96.9 0.0027 5.8E-08 52.1 5.8 90 71-166 103-203 (225)
97 COG4112 Predicted phosphoester 96.3 0.11 2.4E-06 41.4 11.4 98 48-152 73-187 (203)
98 KOG4432 Uncharacterized NUDIX 96.0 0.023 5E-07 49.4 6.8 63 61-131 82-144 (405)
99 KOG4313 Thiamine pyrophosphoki 95.4 0.048 1E-06 46.3 6.4 104 45-153 146-259 (306)
100 KOG1689 mRNA cleavage factor I 95.3 0.026 5.6E-07 45.2 4.2 57 19-86 66-122 (221)
101 KOG4548 Mitochondrial ribosoma 95.1 0.28 6E-06 41.8 10.0 107 46-155 138-250 (263)
102 PRK10880 adenine DNA glycosyla 92.8 1.6 3.5E-05 39.3 10.9 95 48-162 243-341 (350)
103 KOG4432 Uncharacterized NUDIX 87.6 1.5 3.2E-05 38.5 5.7 88 60-156 286-380 (405)
104 PF14443 DBC1: DBC1 72.7 22 0.00048 27.2 6.9 33 58-90 24-59 (126)
105 PF03487 IL13: Interleukin-13; 65.6 6.1 0.00013 23.9 2.1 25 61-85 12-36 (43)
106 PRK13910 DNA glycosylase MutY; 64.2 1E+02 0.0022 27.0 11.8 25 140-164 256-280 (289)
107 PF07026 DUF1317: Protein of u 63.2 14 0.00031 24.3 3.6 33 49-84 13-45 (60)
108 KOG2937 Decapping enzyme compl 42.1 9.2 0.0002 34.0 0.2 32 58-89 264-295 (348)
109 TIGR01084 mutY A/G-specific ad 29.0 1.7E+02 0.0037 25.3 6.0 19 47-65 239-261 (275)
110 PF06453 LT-IIB: Type II heat- 21.7 73 0.0016 23.6 2.0 68 6-82 19-91 (122)
111 PF09505 Dimeth_Pyl: Dimethyla 20.6 61 0.0013 29.1 1.6 30 60-89 402-431 (466)
No 1
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=99.93 E-value=3.1e-25 Score=170.47 Aligned_cols=140 Identities=46% Similarity=0.780 Sum_probs=119.5
Q ss_pred cccc-CCceeEEEEEEEeccCCccccccccCCceEEEEEEeCC-CCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeec
Q 027463 15 QRYE-DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLD 92 (223)
Q Consensus 15 ~~~~-~~~r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~-~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~ 92 (223)
|+|. +++|+++|||+|+.++. ..+||||.+.+ ...|.+|+|++|+||+..+||+||++||+|+.+.+.
T Consensus 1 qry~~~G~r~vagCi~~r~~~~----------~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~ 70 (145)
T KOG2839|consen 1 QRYDPAGFRLVAGCICYRSDKE----------KIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLG 70 (145)
T ss_pred CccCCCCcEEEEEeeeeeecCc----------ceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeee
Confidence 5788 79999999999999762 47999999987 457999999999999999999999999999999988
Q ss_pred CCCeeEEEeeccCCCccCCCCCCceEEEEEEEEecccccCCCCcC--cceeEEEeHHHHhhccCChHHHHHHHHHHHHhh
Q 027463 93 ENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQA--NYKRIWLSVEEAFKSCRYDWMIDALKKFLLGMN 170 (223)
Q Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e--~~~~~W~~~~e~~~~l~~~~~~~~l~~~~~~l~ 170 (223)
+...+.+.+.+...... +..++|.+.+.+.++.+|+.+ ..+.+|+.++|+.+.+.+.+|+.++..+.+.++
T Consensus 71 ~~~~g~~~~~~~~~~~~-------~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~~~~~m~~al~e~~~~l~ 143 (145)
T KOG2839|consen 71 RLLGGFEDFLSKKHRTK-------PKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIELCQHKWMKAALEEFLQFLC 143 (145)
T ss_pred ccccchhhccChhhccc-------ccceeehhhhhhhcccChhhhcccceeEEeeHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 55666666766555442 467899888888888888876 567899999999999999999999999988775
Q ss_pred h
Q 027463 171 T 171 (223)
Q Consensus 171 ~ 171 (223)
.
T Consensus 144 ~ 144 (145)
T KOG2839|consen 144 S 144 (145)
T ss_pred C
Confidence 3
No 2
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.89 E-value=2.5e-22 Score=153.68 Aligned_cols=121 Identities=45% Similarity=0.713 Sum_probs=93.9
Q ss_pred eEEEEEEEeccCCccccccccCCceEEEEEEeCCCCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEee
Q 027463 23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFR 102 (223)
Q Consensus 23 ~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~ 102 (223)
+++|+|+|+.++ +..+|||+++...+.|.+|||+++.|||+.+||+||++||||+.+.....+++.+.+.
T Consensus 1 ~~~g~v~~~~~~----------~~~~vLLv~~~~~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~ 70 (122)
T cd04666 1 LQAGAIPYRETG----------GEVEVLLVTSRRTGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYR 70 (122)
T ss_pred CEEEEEEEEEcC----------CceEEEEEEecCCCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEee
Confidence 479999999764 3569999999877889999999999999999999999999999976551378887765
Q ss_pred ccCCCccCCCCCCceEEEEEEEEecccccCCCCcCcceeEEEeHHHHhhccCChHH
Q 027463 103 SKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWM 158 (223)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~~ 158 (223)
..... ......+++|.+.+.......++.+..+++|++++++.+++.++++
T Consensus 71 ~~~~~-----~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~~~~~~~ 121 (122)
T cd04666 71 KRSKN-----RPPRCEVAVFPLEVTEELDEWPEMHQRKRKWFSPEEAALLVEEPEL 121 (122)
T ss_pred ecCCC-----CCceEEEEEEEEEEeccccCCcccCceEEEEecHHHHHHhcCChhh
Confidence 43221 1123467888888766544445555678999999999999998765
No 3
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.89 E-value=5.7e-22 Score=151.64 Aligned_cols=129 Identities=28% Similarity=0.348 Sum_probs=99.2
Q ss_pred eeEEEEEEEeccCCccccccccCCceEEEEEEeCCCCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEe
Q 027463 22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF 101 (223)
Q Consensus 22 r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~ 101 (223)
+++|+||+++... +.++|||++++..+.|.||||++++|||+.+||.||++||||+.+.... .++.+.|
T Consensus 1 ~~~a~~ii~~~~~----------~~~~vLl~~~~~~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~-~~~~~~~ 69 (131)
T cd03673 1 VLAAGGVVFRGSD----------GGIEVLLIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGD-PLGTIRY 69 (131)
T ss_pred CeeEEEEEEEccC----------CCeEEEEEEcCCCCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecc-eEEEEEE
Confidence 4688999998754 3579999999877889999999999999999999999999999987773 7777766
Q ss_pred eccCCCccCCCCCCceEEEEEEEEecccccC-CCCcCcceeEEEeHHHHhhccCChHHHHHHHHHH
Q 027463 102 RSKSRMNSCNSKEGGCRGYMFALEVTEELES-WPEQANYKRIWLSVEEAFKSCRYDWMIDALKKFL 166 (223)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~-~~~~e~~~~~W~~~~e~~~~l~~~~~~~~l~~~~ 166 (223)
....... ......++|.+........ .++.|..+++|++++++.+.+.++..+.++..++
T Consensus 70 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 130 (131)
T cd03673 70 WFSSSGK-----RVHKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRLSYPNDRELLRAAL 130 (131)
T ss_pred eccCCCC-----CcceEEEEEEEEEcCCCcccCCCCcEEEEEEcCHHHHHHHcCCHhHHHHHHHhh
Confidence 5433211 1234567777765542221 1344667889999999999999999998887764
No 4
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.85 E-value=1.8e-20 Score=143.70 Aligned_cols=127 Identities=24% Similarity=0.243 Sum_probs=92.8
Q ss_pred eeEEEEEEEeccCCccccccccCCceEEEEEEeCCCCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEe
Q 027463 22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF 101 (223)
Q Consensus 22 r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~ 101 (223)
+.++|+|+|..++ ++.+|||+++++ +.|.+|||++++|||+.+||+||++||||+.+.... .++.+.+
T Consensus 2 ~~~~g~vi~~~~~----------~~~~vLl~~~~~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~~~~~~~ 69 (130)
T cd03428 2 ERSAGAIIYRRLN----------NEIEYLLLQASY-GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLF-IVLGFKE 69 (130)
T ss_pred ceEEEEEEEEecC----------CCceEEEEEccC-CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhh-hhcccee
Confidence 5678999999765 467899999987 889999999999999999999999999999976553 3322221
Q ss_pred eccCCCccCCCCCCceEEEEEEEEecccccCCCCcCcceeEEEeHHHHhhccCChHHHHHHHHH
Q 027463 102 RSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDALKKF 165 (223)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~~~~~l~~~ 165 (223)
...... ......+++|.+.+.........++..+++|++++++.+++.++.++.++.++
T Consensus 70 ~~~~~~-----~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~ 128 (130)
T cd03428 70 TLNYQV-----RGKLKTVTYFLAELRPDVEVKLSEEHQDYRWLPYEEALKLLTYEDLKAVLDKA 128 (130)
T ss_pred EEEccc-----cCcceEEEEEEEEeCCCCccccccceeeEEeecHHHHHHHcCchhHHHHHHHh
Confidence 111100 01124567788877632222233566789999999999999999888877665
No 5
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.83 E-value=1.9e-19 Score=141.50 Aligned_cols=136 Identities=18% Similarity=0.181 Sum_probs=91.1
Q ss_pred ceeEEEEEEEeccCCccccccccCCceEEEEEEeCCC-CCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCC-CeeE
Q 027463 21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDEN-PLGE 98 (223)
Q Consensus 21 ~r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~-~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~-~l~~ 98 (223)
.+.++++|+++.++ +|||++|... +.|.+|||++|.|||+.+||+||++||||+.+..... .++.
T Consensus 6 ~~~~v~~vi~~~~~-------------~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~ 72 (148)
T PRK09438 6 RPVSVLVVIYTPDL-------------GVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDC 72 (148)
T ss_pred CceEEEEEEEeCCC-------------eEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeeccc
Confidence 45677788887543 6999988654 5799999999999999999999999999998732211 1110
Q ss_pred ---EEeec-cCCCccCCCCCCceEEEEEEEEecccccCCCCcCcceeEEEeHHHHhhccCChHHHHHHHHHHHHhh
Q 027463 99 ---WEFRS-KSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDALKKFLLGMN 170 (223)
Q Consensus 99 ---~~~~~-~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~~~~~l~~~~~~l~ 170 (223)
..|.. +.....++........++|.+.+...... ..+|..+++|++++++.++...+.++.++..+..+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~E~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~~ 147 (148)
T PRK09438 73 QRSIEYEIFPHWRHRYAPGVTRNTEHWFCLALPHERPV-VLTEHLAYQWLDAREAAALTKSWSNAEAIEQLVIRLA 147 (148)
T ss_pred ccccccccchhhhhccccccCCceeEEEEEecCCCCcc-ccCcccceeeCCHHHHHHHhcChhHHHHHHHHHHHhc
Confidence 11110 00000000111234567787776543222 2236678999999999999999999999988877653
No 6
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.83 E-value=3.1e-19 Score=135.88 Aligned_cols=111 Identities=23% Similarity=0.245 Sum_probs=80.8
Q ss_pred EEEEEEeCCC---CCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEEEEE
Q 027463 48 LVLMISTPNR---DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFAL 124 (223)
Q Consensus 48 ~VLLv~r~~~---~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 124 (223)
+|||+++++. +.|.+|||++|.|||+.+||+||++||||+.+... ..++.+.+........ .......++|.+
T Consensus 12 ~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~f~~ 87 (128)
T cd04684 12 KLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIG-RRLGSASRYFYSPDGD---YDAHHLCVFYDA 87 (128)
T ss_pred EEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecc-eeeeEEEEEEECCCCC---eeccEEEEEEEE
Confidence 7999999764 77999999999999999999999999999997765 3667655432211110 012345677877
Q ss_pred Eeccccc--CCCCcCcceeEEEeHHHHhhccCChHHHHHH
Q 027463 125 EVTEELE--SWPEQANYKRIWLSVEEAFKSCRYDWMIDAL 162 (223)
Q Consensus 125 ~v~~~~~--~~~~~e~~~~~W~~~~e~~~~l~~~~~~~~l 162 (223)
....... ..+.++..+++|++++++......+....++
T Consensus 88 ~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~~~~~~a~ 127 (128)
T cd04684 88 RVVGGALPVQEPGEDSHGAAWLPLDEAIERLLSPLVLWAV 127 (128)
T ss_pred EEecCccccCCCCCCceeeEEECHHHhhccCCCHHHHHhh
Confidence 7665432 2344456788999999999888888776654
No 7
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=2.6e-19 Score=138.12 Aligned_cols=123 Identities=18% Similarity=0.090 Sum_probs=86.7
Q ss_pred EEEEEEeccCCccccccccCCceEEEEEEeCC--CCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeE--EE
Q 027463 25 AGCIPYKFEKNDENKNCKMEKKVLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGE--WE 100 (223)
Q Consensus 25 ~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~--~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~--~~ 100 (223)
+|+|++.... +..+|||++|.. .+.|.+|||++++|||+.+||+||++||||+++.... ..+. ..
T Consensus 2 ~~~v~~~~~~----------~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~-~~~~~~~~ 70 (131)
T cd04695 2 VSGVLLRSLD----------KETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELY-NADYLEQF 70 (131)
T ss_pred ceEEEEEEcC----------CCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccc-cccceeeE
Confidence 5778887654 356899999987 6789999999999999999999999999999865331 1111 11
Q ss_pred eeccCCCccCCCCCCceEEEEEEEEecccccCCCCcCcceeEEEeHHHHhhccCChHHHHHHHHHH
Q 027463 101 FRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDALKKFL 166 (223)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~~~~~l~~~~ 166 (223)
|..... ......+|.+.+.......+.++..+++|++++++.+++..+..+.++....
T Consensus 71 ~~~~~~--------~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~ 128 (131)
T cd04695 71 YEANDN--------RILMAPVFVGFVPPHQEVVLNHEHTEYRWCSFAEALELAPFPGQRALYDHVW 128 (131)
T ss_pred eecCCc--------eEEEEEEEEEEecCCCccccCchhcccEecCHHHHHHhcCChhHHHHHHHHH
Confidence 221111 1234456666554322222345667889999999999999998888776553
No 8
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.82 E-value=4.7e-19 Score=137.96 Aligned_cols=131 Identities=18% Similarity=0.122 Sum_probs=85.9
Q ss_pred eeEEEEEEEeccCCccccccccCCceEEEEEEeCCCCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeE---
Q 027463 22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGE--- 98 (223)
Q Consensus 22 r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~--- 98 (223)
++.+++++++.+ .++|||++++..+.|.+|||++++|||+.+||+||++||||+++.... ..+.
T Consensus 2 ~~~~~~~v~~~~------------~~~vLLv~r~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~-~~~~~~~ 68 (138)
T cd03674 2 HFTASAFVVNPD------------RGKVLLTHHRKLGSWLQPGGHIDPDESLLEAALRELREETGIELLGLR-PLSVLVD 68 (138)
T ss_pred cEEEEEEEEeCC------------CCeEEEEEEcCCCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccce-ecccccc
Confidence 456788888754 148999999888899999999999999999999999999999865331 2211
Q ss_pred -EEeeccCCCccCCCCCCceEEEEEEEEeccc-ccCCCCcCcceeEEEeHHHHhhccCChHHHHHHHHHH
Q 027463 99 -WEFRSKSRMNSCNSKEGGCRGYMFALEVTEE-LESWPEQANYKRIWLSVEEAFKSCRYDWMIDALKKFL 166 (223)
Q Consensus 99 -~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~-~~~~~~~e~~~~~W~~~~e~~~~l~~~~~~~~l~~~~ 166 (223)
..+........ +.........+|.+.+... ....+.+|..+++|++++++.+....+.++.++..++
T Consensus 69 ~~~~~~~~~~~~-~~~~~~~~~~~y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~i~~~~ 137 (138)
T cd03674 69 LDVHPIDGHPKR-GVPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFPLDELASLELPEDVRRLVEKAL 137 (138)
T ss_pred ceeEeecCCCCC-CCCCcEEEEEEEEEEccCccccCCCCCcccccEEEcHHHhhhccCCHHHHHHHHHHh
Confidence 11111111000 0001122344566665432 2111344667899999999987777788888877664
No 9
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=3.6e-19 Score=135.89 Aligned_cols=113 Identities=14% Similarity=0.085 Sum_probs=81.3
Q ss_pred ceeEEEEEEEeccCCccccccccCCceEEEEEEeCC---CCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCee
Q 027463 21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG 97 (223)
Q Consensus 21 ~r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~---~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~ 97 (223)
+|..+++++++.+ .+|||++|.. .+.|.+|||++++|||+.+||+||++||||+.+... .+++
T Consensus 1 ~~~~~~~~i~~~~-------------~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~-~~~~ 66 (125)
T cd04679 1 PRVGCGAAILRDD-------------GKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHST-RLLC 66 (125)
T ss_pred CceEEEEEEECCC-------------CEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccc-eEEE
Confidence 5788999988754 3799998864 367999999999999999999999999999998766 3666
Q ss_pred EEEeeccCCCccCCCCCCceEEEEEEEEeccc-ccCCCCcCcceeEEEeHHHHhhccC
Q 027463 98 EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEE-LESWPEQANYKRIWLSVEEAFKSCR 154 (223)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~-~~~~~~~e~~~~~W~~~~e~~~~l~ 154 (223)
.+.+..... .......+|.+..... ......+|..+++|++++++.+.+.
T Consensus 67 ~~~~~~~~~-------~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~l~ 117 (125)
T cd04679 67 VVDHIIEEP-------PQHWVAPVYLAENFSGEPRLMEPDKLLELGWFALDALPQPLT 117 (125)
T ss_pred EEeecccCC-------CCeEEEEEEEEeecCCccccCCCccccEEEEeCHHHCCchhH
Confidence 654332221 1123556777765432 2211234567899999999987555
No 10
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=3.3e-19 Score=134.57 Aligned_cols=104 Identities=21% Similarity=0.234 Sum_probs=76.8
Q ss_pred EEEEEEeCCCCCeecCCcccCCCCCHHHHHHHHHHHHhCceee-ecCCCeeEEEeeccCCCccCCCCCCceEEEEEEEEe
Q 027463 48 LVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGL-LDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEV 126 (223)
Q Consensus 48 ~VLLv~r~~~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v 126 (223)
+|||++++..+.|.+|||+++.|||+.+||+||++||||+.+. .. ..++.+.+..... ....++|.+..
T Consensus 13 ~vLL~~r~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~-~~~~~~~~~~~~~---------~~~~~~f~~~~ 82 (120)
T cd04680 13 RVLLVRHTYGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVA-ELLGVYYHSASGS---------WDHVIVFRARA 82 (120)
T ss_pred eEEEEEECCCCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCcccccc-ceEEEEecCCCCC---------ceEEEEEEecc
Confidence 7999999877789999999999999999999999999999987 55 3666665543211 13456777766
Q ss_pred cccccCCCCcCcceeEEEeHHHHhhccCChHHHHHH
Q 027463 127 TEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDAL 162 (223)
Q Consensus 127 ~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~~~~~l 162 (223)
.......+.+|..+++|++++++.+.+..+ .+..+
T Consensus 83 ~~~~~~~~~~E~~~~~w~~~~~l~~~~~~~-~~~~~ 117 (120)
T cd04680 83 DTQPVIRPSHEISEARFFPPDALPEPTTPA-TRRRI 117 (120)
T ss_pred cCCCccCCcccEEEEEEECHHHCcccCChH-HHHHh
Confidence 543323344566788999999999866643 44333
No 11
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.80 E-value=1.9e-18 Score=135.83 Aligned_cols=119 Identities=18% Similarity=0.210 Sum_probs=81.4
Q ss_pred CceeEEEEEEEeccCCccccccccCCceEEEEEEeCC---CCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecC-CC
Q 027463 20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE-NP 95 (223)
Q Consensus 20 ~~r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~---~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~-~~ 95 (223)
-++..+++|+++.+ ++|||++|.. .+.|.+|||+++.|||+.+||+||++||||+.+.+.. .+
T Consensus 10 ~p~v~v~~vI~~~~-------------g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~ 76 (144)
T cd03430 10 TPLVSIDLIVENED-------------GQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAEL 76 (144)
T ss_pred CCeEEEEEEEEeCC-------------CeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceE
Confidence 35678888888753 3899999854 4679999999999999999999999999999976552 25
Q ss_pred eeEEEeeccCCCccCCCCCCceEEEEEEEEecccccCCCCcCcceeEEEeHHHHhhc
Q 027463 96 LGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKS 152 (223)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~W~~~~e~~~~ 152 (223)
++.+.+........ .....+....+|.+.........+..+..+++|++++++.+.
T Consensus 77 l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 132 (144)
T cd03430 77 LGVFEHFYDDNFFG-DDFSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLTSDELLAD 132 (144)
T ss_pred EEEEEEEecccccc-CCCccEEEEEEEEEEEcCCcccCCchhccEeEEecHHHHhcC
Confidence 56654322111000 011223455667666554322224456778999999999864
No 12
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.79 E-value=1.9e-18 Score=135.36 Aligned_cols=117 Identities=21% Similarity=0.136 Sum_probs=83.2
Q ss_pred ceeEEEEEEEeccCCccccccccCCceEEEEEEeCC---CCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCee
Q 027463 21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG 97 (223)
Q Consensus 21 ~r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~---~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~ 97 (223)
...++++++++.+ .+|||++++. .+.|.+|||++++|||+.+||+||++||||+.+... .+++
T Consensus 12 ~~~av~~vv~~~~-------------~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~-~~~~ 77 (142)
T cd04700 12 EARAAGAVILNER-------------NDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPV-KFLG 77 (142)
T ss_pred eeeeEEEEEEeCC-------------CcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeecc-EEEE
Confidence 3567788888743 2689998754 356999999999999999999999999999998766 3666
Q ss_pred EEEeeccCCCccCCCCCCceEEEEEEEEeccc-ccCCCCcCcceeEEEeHHHHhhccCChHHH
Q 027463 98 EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEE-LESWPEQANYKRIWLSVEEAFKSCRYDWMI 159 (223)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~-~~~~~~~e~~~~~W~~~~e~~~~l~~~~~~ 159 (223)
.+.+..... .....++|.+..... ......+|..+++|++++++.+++......
T Consensus 78 ~~~~~~~~~--------~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g~i~ 132 (142)
T cd04700 78 TYLGRFDDG--------VLVLRHVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLYAQGQLR 132 (142)
T ss_pred EEEEEcCCC--------cEEEEEEEEEEecCCccccCCCCCEEEEEEECHHHhhhcccccccc
Confidence 655433211 113346777766432 121223566789999999999988765443
No 13
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.79 E-value=1.8e-18 Score=138.14 Aligned_cols=123 Identities=20% Similarity=0.198 Sum_probs=81.8
Q ss_pred CCceeEEEEEEEeccCCccccccccCCceEEEEEEeCCC---CCeecCCcccCCCCCHHHHHHHHHHHHhCceeeec-CC
Q 027463 19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR---DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLD-EN 94 (223)
Q Consensus 19 ~~~r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~---~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~-~~ 94 (223)
..+..++++|+.+.. ++|||++|... +.|.||||+++.|||+++||+||++||||+++.+. ..
T Consensus 14 ~~~~~~v~~vI~~~~-------------g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~ 80 (159)
T PRK15434 14 STPLISLDFIVENSR-------------GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQ 80 (159)
T ss_pred CCceEEEEEEEECCC-------------CEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccce
Confidence 456677877776532 48999998643 57999999999999999999999999999986432 13
Q ss_pred CeeEEEeeccCCCccCCCCCCceEEEEEEEEecccccCCCCcCcceeEEEeHHHHhhccCC
Q 027463 95 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRY 155 (223)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~ 155 (223)
+++.+.+......... .........+|.+............+..+++|++++++......
T Consensus 81 ~~~~~~~~~~~~~~~~-~~~~~~i~~~f~~~~~~g~~~~~~~E~~~~~W~~~~el~~~~~~ 140 (159)
T PRK15434 81 FYGVWQHFYDDNFSGT-DFTTHYVVLGFRLRVAEEDLLLPDEQHDDYRWLTPDALLASDNV 140 (159)
T ss_pred EEEEEEeecccccCCC-ccceEEEEEEEEEEecCCcccCChHHeeEEEEEeHHHhhhcccc
Confidence 5565543222111000 01123456677777654322223345678999999999876443
No 14
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=2.8e-18 Score=130.30 Aligned_cols=127 Identities=15% Similarity=0.075 Sum_probs=84.1
Q ss_pred eeEEEEEEEeccCCccccccccCCceEEEEEEeCCCCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEe
Q 027463 22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF 101 (223)
Q Consensus 22 r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~ 101 (223)
|..+++|+++.+ ++|||++|...+.|.+|||+++.|||+.+||.||++||||+.+...+ .++.+..
T Consensus 2 ~~~v~~ii~~~~-------------~~vLl~~r~~~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~-~~~~~~~ 67 (129)
T cd04676 2 LPGVTAVVRDDE-------------GRVLLIRRSDNGLWALPGGAVEPGESPADTAVREVREETGLDVEVTG-LVGIYTG 67 (129)
T ss_pred cceEEEEEECCC-------------CeEEEEEecCCCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeE-EEEEeec
Confidence 456777776543 37999999888889999999999999999999999999999976552 4443321
Q ss_pred eccCCCccCCCCCCceEEEEEEEEecccccCCCCcCcceeEEEeHHHHhhccCChHHHHHHH
Q 027463 102 RSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDALK 163 (223)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~~~~~l~ 163 (223)
......... +.......++|.+.........+..+..+++|++++++.++..++.++.+++
T Consensus 68 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~ 128 (129)
T cd04676 68 PVHVVTYPN-GDVRQYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPPLLMHPSMRLRID 128 (129)
T ss_pred ccceeecCC-CCcEEEEEEEEEEEeeCCeecCCCCceeEEEEEChhhCccccCCHhHHHHhc
Confidence 111000000 1111234455655544322212344556789999999999887777766553
No 15
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.79 E-value=6e-18 Score=130.50 Aligned_cols=111 Identities=24% Similarity=0.343 Sum_probs=78.7
Q ss_pred EEEEEEeCCC--CCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEEEEEE
Q 027463 48 LVLMISTPNR--DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALE 125 (223)
Q Consensus 48 ~VLLv~r~~~--~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 125 (223)
++||+++.+. +.|.+|||++++|||+.+||.||++||||+.+... ..++.+.+...... .....++|.+.
T Consensus 12 ~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~-~~~~~~~~~~~~~~-------~~~~~~~f~~~ 83 (134)
T cd03675 12 RFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPT-ALLGIYQWTAPDSD-------TTYLRFAFAAE 83 (134)
T ss_pred EEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccc-eEEEEEEeecCCCC-------eeEEEEEEEEE
Confidence 7999998654 46999999999999999999999999999997655 35666655443211 12344567676
Q ss_pred ecccccC-CCCcCcceeEEEeHHHHhhcc---CChHHHHHHHHHH
Q 027463 126 VTEELES-WPEQANYKRIWLSVEEAFKSC---RYDWMIDALKKFL 166 (223)
Q Consensus 126 v~~~~~~-~~~~e~~~~~W~~~~e~~~~l---~~~~~~~~l~~~~ 166 (223)
+...... ..+++..++.|++++++..+. ..+.....+..++
T Consensus 84 ~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~~~l 128 (134)
T cd03675 84 LLEHLPDQPLDSGIVRAHWLTLEEILALAARLRSPLVLRCIEDYL 128 (134)
T ss_pred ECCCCCCCCCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHHHHH
Confidence 6543221 233456788999999998875 4565666665554
No 16
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=3.5e-18 Score=129.17 Aligned_cols=106 Identities=21% Similarity=0.173 Sum_probs=74.2
Q ss_pred EEEEEEeCC---CCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEEEEE
Q 027463 48 LVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFAL 124 (223)
Q Consensus 48 ~VLLv~r~~---~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 124 (223)
+|||+++.+ .+.|.+|||+++.|||+++||.||++||||+.+... ..++.+.+....... +.......++|.+
T Consensus 12 ~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 87 (122)
T cd04673 12 RVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVG-RLLTVVDVIERDAAG---RVEFHYVLIDFLC 87 (122)
T ss_pred EEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeec-eeEEEEEEeeccCCC---ccceEEEEEEEEE
Confidence 799998864 356999999999999999999999999999998766 366666543321110 1112334555666
Q ss_pred EecccccCCCCcCcceeEEEeHHHHhhccCChHH
Q 027463 125 EVTEELESWPEQANYKRIWLSVEEAFKSCRYDWM 158 (223)
Q Consensus 125 ~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~~ 158 (223)
....... .+..|..+++|++++++.++...+..
T Consensus 88 ~~~~~~~-~~~~E~~~~~w~~~~el~~~~~~~~~ 120 (122)
T cd04673 88 RYLGGEP-VAGDDALDARWVPLDELAALSLTEST 120 (122)
T ss_pred EeCCCcc-cCCcccceeEEECHHHHhhCcCCccc
Confidence 5543222 24456678899999999988766543
No 17
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.79 E-value=2.7e-18 Score=131.10 Aligned_cols=124 Identities=24% Similarity=0.264 Sum_probs=90.8
Q ss_pred eeEEEEEEEeccCCccccccccCCceEEEEEEeCCC-----CCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCe
Q 027463 22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPL 96 (223)
Q Consensus 22 r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~-----~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l 96 (223)
|.+|++|+++.++ +|||+++.+. +.|.+|||+++.|||+.+||+||+.||||+.+... ..+
T Consensus 2 ~~~v~~ii~~~~~-------------~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~-~~~ 67 (134)
T PF00293_consen 2 RRAVGVIIFNEDG-------------KVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPL-ELL 67 (134)
T ss_dssp EEEEEEEEEETTT-------------EEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEE-EEE
T ss_pred CCEEEEEEEeCCc-------------EEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceeccc-ccc
Confidence 7789999998753 8999999866 46999999999999999999999999999998554 255
Q ss_pred eEEEeeccCCCccCCCCCCceEEEEEEEEecccc-c-CCCCcCcceeEEEeHHHHhhccCChHHHHHHHHH
Q 027463 97 GEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEEL-E-SWPEQANYKRIWLSVEEAFKSCRYDWMIDALKKF 165 (223)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~-~-~~~~~e~~~~~W~~~~e~~~~l~~~~~~~~l~~~ 165 (223)
+.+.+....... .....++|.+.+.... . .....+..+++|++++++.++..+.....++..+
T Consensus 68 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~i~~~ 132 (134)
T PF00293_consen 68 GLFSYPSPSGDP------EGEIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNGRIRKIIPWL 132 (134)
T ss_dssp EEEEEEETTTES------SEEEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTTHHHHHHHHH
T ss_pred eeeeecccCCCc------ccEEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCcchhhhhccc
Confidence 555554433221 1235566666555432 1 1122366788999999999998888777666554
No 18
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=1.7e-18 Score=132.83 Aligned_cols=112 Identities=16% Similarity=0.160 Sum_probs=76.5
Q ss_pred EEEEEEeCC---CCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEEEEE
Q 027463 48 LVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFAL 124 (223)
Q Consensus 48 ~VLLv~r~~---~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 124 (223)
+|||++|.. .+.|.+|||+++.|||+.+||.||++||||+..... ..++.+....... +.......++|.+
T Consensus 14 ~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 87 (130)
T cd04681 14 ELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTEL-SYLFSLPNTYPYG-----GMEYDTLDLFFVC 87 (130)
T ss_pred cEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccce-eEEEeecceeeeC-----CceeEEEEEEEEE
Confidence 799998854 357999999999999999999999999999987644 2455443211111 1111223456777
Q ss_pred EecccccCCCCcCcceeEEEeHHHHh-hccCChHHHHHHHHH
Q 027463 125 EVTEELESWPEQANYKRIWLSVEEAF-KSCRYDWMIDALKKF 165 (223)
Q Consensus 125 ~v~~~~~~~~~~e~~~~~W~~~~e~~-~~l~~~~~~~~l~~~ 165 (223)
.+.........++..+++|++++++. +.+.++..+.++..+
T Consensus 88 ~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~~~ 129 (130)
T cd04681 88 QVDDKPIVKAPDDVAELKWVVPQDIELENFAFPSIRQAVERW 129 (130)
T ss_pred EeCCCCCcCChHHhheeEEecHHHCCcccCCcHHHHHHHHhh
Confidence 76543322233466788999999985 557777777777654
No 19
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=6.2e-18 Score=129.09 Aligned_cols=120 Identities=22% Similarity=0.159 Sum_probs=80.0
Q ss_pred eEEEEEEEeccCCccccccccCCceEEEEEEeCC-CCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEe
Q 027463 23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF 101 (223)
Q Consensus 23 ~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~-~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~ 101 (223)
.++++++++.++ +|||+++.. .+.|.+|||+++.|||+.+||+||++||||+.+.... .++...+
T Consensus 3 ~~v~~~i~~~~~-------------~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~~~~~~~ 68 (125)
T cd04696 3 VTVGALIYAPDG-------------RILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIK-FAMVQEA 68 (125)
T ss_pred cEEEEEEECCCC-------------CEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccc-eEEEEEE
Confidence 467777776432 799998753 4679999999999999999999999999999876553 4444333
Q ss_pred eccCCCccCCCCCCceEEEEEEEEecccccCCCCcCcceeEEEeHHHHhhccCChHHHHH
Q 027463 102 RSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDA 161 (223)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~~~~~ 161 (223)
....... .......+.|.+..... .....++..+++|++++++.++-..+.....
T Consensus 69 ~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~ 123 (125)
T cd04696 69 IFSEEFH----KPAHFVLFDFFARTDGT-EVTPNEEIVEWEWVTPEEALDYPLNSFTRLL 123 (125)
T ss_pred eccCCCC----CccEEEEEEEEEEecCC-cccCCcccceeEEECHHHHhcCCCCHHHHHH
Confidence 2211110 11123345555555432 2224446678899999999887666654443
No 20
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=5.6e-18 Score=129.88 Aligned_cols=119 Identities=24% Similarity=0.238 Sum_probs=81.5
Q ss_pred eeEEEEEEEeccCCccccccccCCceEEEEEEeCCC--CCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEE
Q 027463 22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR--DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEW 99 (223)
Q Consensus 22 r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~--~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~ 99 (223)
|..|++|+++.+ +|||+++.+. +.|.+|||+++.|||+.+||+||+.||||+.+... ..+..+
T Consensus 1 r~~a~~iv~~~~--------------~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~-~~~~~~ 65 (128)
T cd04687 1 RNSAKAVIIKND--------------KILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIG-PLLFVR 65 (128)
T ss_pred CcEEEEEEEECC--------------EEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccC-cEEEEE
Confidence 567888888632 7999988543 45999999999999999999999999999998765 355555
Q ss_pred EeeccCCCccCCCCCCceEEEEEEEEeccccc----CCCCcCcceeEEEeHHHHhhccCCh
Q 027463 100 EFRSKSRMNSCNSKEGGCRGYMFALEVTEELE----SWPEQANYKRIWLSVEEAFKSCRYD 156 (223)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~----~~~~~e~~~~~W~~~~e~~~~l~~~ 156 (223)
.|...... .+.+...+...++|.+....... ..++.+..+++|++++++.++..++
T Consensus 66 ~~~~~~~~-~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~~~~p 125 (128)
T cd04687 66 EYIGHNPT-SELPGHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDIPLYP 125 (128)
T ss_pred EEeccCcc-ccCCCceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcccccC
Confidence 54322100 00012234566788777654221 1123344578999999998876655
No 21
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.78 E-value=4e-18 Score=131.85 Aligned_cols=110 Identities=20% Similarity=0.112 Sum_probs=81.7
Q ss_pred EEEEEEeCC---CCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEEEEE
Q 027463 48 LVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFAL 124 (223)
Q Consensus 48 ~VLLv~r~~---~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 124 (223)
+|||++|.. .+.|.+|||+++.|||+.+||+||++||||+.+... ..++.+.+...... .....++|.+
T Consensus 13 ~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~-~~~~~~~~~~~~~~-------~~~~~~~f~~ 84 (137)
T cd03427 13 KVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNL-KLVGIIKFPFPGEE-------ERYGVFVFLA 84 (137)
T ss_pred EEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecc-eEEEEEEEEcCCCC-------cEEEEEEEEE
Confidence 799999876 467999999999999999999999999999998766 36677766543321 1235666666
Q ss_pred EecccccCCCCcCcceeEEEeHHHHhhccCChHHHHHHHHHH
Q 027463 125 EVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDALKKFL 166 (223)
Q Consensus 125 ~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~~~~~l~~~~ 166 (223)
........ ...+..+++|++++++......+..+.++..++
T Consensus 85 ~~~~~~~~-~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 125 (137)
T cd03427 85 TEFEGEPL-KESEEGILDWFDIDDLPLLPMWPGDREWLPLML 125 (137)
T ss_pred CCcccccC-CCCccccceEEcHhhcccccCCCCcHHHHHHHh
Confidence 54432221 233556789999999998877777777777666
No 22
>PLN02325 nudix hydrolase
Probab=99.78 E-value=3.9e-18 Score=134.06 Aligned_cols=118 Identities=17% Similarity=0.092 Sum_probs=80.9
Q ss_pred CCceeEEEEEEEeccCCccccccccCCceEEEEEEeCC---CCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCC
Q 027463 19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENP 95 (223)
Q Consensus 19 ~~~r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~---~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~ 95 (223)
..++..+++++++.+ +|||++|.. .+.|.+|||+++.|||+.+||+||++||||+++...+ +
T Consensus 6 ~~p~~~v~~vi~~~~--------------~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~-~ 70 (144)
T PLN02325 6 PIPRVAVVVFLLKGN--------------SVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIE-L 70 (144)
T ss_pred CCCeEEEEEEEEcCC--------------EEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceE-E
Confidence 467788888777632 799998865 3679999999999999999999999999999987663 6
Q ss_pred eeEEEeeccCCCccCCCCCCceEEEEEEEEecccc-c--CCCCcCcceeEEEeHHHHhhccCCh
Q 027463 96 LGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEEL-E--SWPEQANYKRIWLSVEEAFKSCRYD 156 (223)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~-~--~~~~~e~~~~~W~~~~e~~~~l~~~ 156 (223)
++.+++...... ...+...++|.+...+.. . ....++..+++|+++++++..+..+
T Consensus 71 l~~~~~~~~~~~-----~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~~~~p 129 (144)
T PLN02325 71 LTVTNNVFLEEP-----KPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEPLFWP 129 (144)
T ss_pred EEEecceeecCC-----CCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChhhhHH
Confidence 666543221111 112345666766654321 1 1112233678999999998755433
No 23
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=4.8e-18 Score=129.44 Aligned_cols=119 Identities=10% Similarity=0.031 Sum_probs=82.0
Q ss_pred ceeEEEEEEEeccCCccccccccCCceEEEEEEeCCCCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEE
Q 027463 21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE 100 (223)
Q Consensus 21 ~r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~ 100 (223)
+++.+.+++++.+ +|||++++..+.|.+|||++++|||+.+||+||++||||+.+... ..++.+.
T Consensus 1 p~~~v~~~i~~~~--------------~vLL~~~~~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~-~~~~~~~ 65 (123)
T cd04672 1 PKVDVRAAIFKDG--------------KILLVREKSDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVR-KLAAVDD 65 (123)
T ss_pred CcceEEEEEEECC--------------EEEEEEEcCCCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEe-EEEEEec
Confidence 3566778877642 799999988888999999999999999999999999999998655 3555543
Q ss_pred eeccCCCccCCCCCCceEEEEEEEEecccccCCCCcCcceeEEEeHHHHhhccCChHHH
Q 027463 101 FRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMI 159 (223)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~~~ 159 (223)
+...... +........+|.+.+...... +..+..+++|++++++.++......+
T Consensus 66 ~~~~~~~----~~~~~~~~~~f~~~~~~~~~~-~~~E~~~~~W~~~~el~~l~~~~~~~ 119 (123)
T cd04672 66 RNKHHPP----PQPYQVYKLFFLCEILGGEFK-PNIETSEVGFFALDDLPPLSEKRNTE 119 (123)
T ss_pred cccccCC----CCceEEEEEEEEEEecCCccc-CCCceeeeEEECHHHCcccccCCcch
Confidence 3221111 011123445677776543221 33566788999999998876544333
No 24
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.78 E-value=3.2e-18 Score=131.29 Aligned_cols=121 Identities=21% Similarity=0.178 Sum_probs=84.0
Q ss_pred EEEEEEEeccCCccccccccCCceEEEEEEeCC--CCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEE-
Q 027463 24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE- 100 (223)
Q Consensus 24 ~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~--~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~- 100 (223)
++.+++++..+ +++|||++|.. .+.|.+|||+++.|||+.+||+||++||||+.+.... .++...
T Consensus 3 ~~~v~~~~~~~-----------~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~-~~~~~~~ 70 (129)
T cd04664 3 SVLVVPYRLTG-----------EGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLT-LLDRGAS 70 (129)
T ss_pred EEEEEEEEeCC-----------CCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheE-EEeeccc
Confidence 45567777532 35899999977 5779999999999999999999999999999864331 333322
Q ss_pred --eeccCCCccCCCCCCceEEEEEEEEecccccCCCCcCcceeEEEeHHHHhhccCChHHHHHH
Q 027463 101 --FRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDAL 162 (223)
Q Consensus 101 --~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~~~~~l 162 (223)
+..... .......++|.+.+.........+|..+++|++++++.+++.++.++.++
T Consensus 71 ~~~~~~~~------~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~ 128 (129)
T cd04664 71 IAFVEFTD------NGRVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAALLLWESNRRAW 128 (129)
T ss_pred ccccccCC------CceEEEEeEEEEEcCCCCcccCCccccccEecCHHHHHHHHcChhhhhhh
Confidence 111100 00234567787776654312233456788999999999999988777654
No 25
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.78 E-value=8.4e-18 Score=132.37 Aligned_cols=109 Identities=19% Similarity=0.183 Sum_probs=73.8
Q ss_pred EEEEEEEeccCCccccccccCCceEEEEEEeCCCCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeec
Q 027463 24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRS 103 (223)
Q Consensus 24 ~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~ 103 (223)
++|+|+++.++ .+|||+++...+.|.||||++|.|||+.+||+||++||||+.+.... . ...|..
T Consensus 3 ~~gaii~~~~~------------~~vLLvr~~~~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~-~--~~~~~~ 67 (145)
T cd03672 3 VYGAIILNEDL------------DKVLLVKGWKSKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYI-D--KDDYIE 67 (145)
T ss_pred eeEEEEEeCCC------------CEEEEEEecCCCCEECCCccCCCCcCHHHHHHHHHHHhhCccceecc-c--cceeee
Confidence 57888888642 38999998777789999999999999999999999999999865431 1 112221
Q ss_pred cCCCccCCCCCCceEEEEEEEE-eccccc--CCCCcCcceeEEEeHHHHhhccCC
Q 027463 104 KSRMNSCNSKEGGCRGYMFALE-VTEELE--SWPEQANYKRIWLSVEEAFKSCRY 155 (223)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~f~~~-v~~~~~--~~~~~e~~~~~W~~~~e~~~~l~~ 155 (223)
..... ..+.+|.+. +..... ..+.+|..+++|++++++.+++..
T Consensus 68 ~~~~~--------~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 114 (145)
T cd03672 68 LIIRG--------QNVKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNK 114 (145)
T ss_pred cccCC--------cEEEEEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhh
Confidence 11111 123344333 332211 123346778999999999987643
No 26
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.77 E-value=1.4e-17 Score=131.08 Aligned_cols=129 Identities=19% Similarity=0.220 Sum_probs=84.0
Q ss_pred ceeEEEEEEEeccCCccccccccCCceEEEEEEeCCCC-CeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeE-
Q 027463 21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRD-DLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGE- 98 (223)
Q Consensus 21 ~r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~~-~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~- 98 (223)
.|.++++|+++.+ ++|||++|...+ .|.+|||++++||++.+||+||++||||+.+...+ .++.
T Consensus 2 ~~~~v~~ii~~~~-------------~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~-~l~~~ 67 (147)
T cd03671 2 YRPNVGVVLFNED-------------GKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVE-IIAEI 67 (147)
T ss_pred CCceEEEEEEeCC-------------CEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceE-EEEEc
Confidence 4678888888753 389999998774 89999999999999999999999999999965432 3333
Q ss_pred ---EEeeccCCC--ccCCCCCCceEEEEEEEEecc---cccCCC--CcCcceeEEEeHHHHhhccCChHHHHHHHH
Q 027463 99 ---WEFRSKSRM--NSCNSKEGGCRGYMFALEVTE---ELESWP--EQANYKRIWLSVEEAFKSCRYDWMIDALKK 164 (223)
Q Consensus 99 ---~~~~~~~~~--~~~~~~~~~~~~~~f~~~v~~---~~~~~~--~~e~~~~~W~~~~e~~~~l~~~~~~~~l~~ 164 (223)
+.|...... ....+.......++|.+.+.. .....+ +.|..+++|++++++.+++.. ..+.++.+
T Consensus 68 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~~-~~~~~~~~ 142 (147)
T cd03671 68 PDWLRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIVP-FKRPVYEA 142 (147)
T ss_pred CCeeEeeChhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhchh-hhHHHHHH
Confidence 233322110 000000012245666665543 222222 346678899999999998753 34444443
No 27
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=5.2e-18 Score=130.14 Aligned_cols=102 Identities=21% Similarity=0.171 Sum_probs=69.4
Q ss_pred EEEEEEeCCCCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEE----eeccCCCccCCCCCCceEEEEEE
Q 027463 48 LVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE----FRSKSRMNSCNSKEGGCRGYMFA 123 (223)
Q Consensus 48 ~VLLv~r~~~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~f~ 123 (223)
+|||++|...+.|.||||++++|||+.+||+||++||||+.+.... .++.+. |..... +.......++|.
T Consensus 20 ~vLL~~r~~~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 93 (132)
T cd04677 20 EVLLQKRSDTGDWGLPGGAMELGESLEETARRELKEETGLEVEELE-LLGVYSGKEFYVKPNG-----DDEQYIVTLYYV 93 (132)
T ss_pred CEEEEEecCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeE-EEEEecCCceeecCCC-----CcEEEEEEEEEE
Confidence 7999998877789999999999999999999999999999977653 444432 111111 111122334444
Q ss_pred EEecccccCCCCcCcceeEEEeHHHHhhccCC
Q 027463 124 LEVTEELESWPEQANYKRIWLSVEEAFKSCRY 155 (223)
Q Consensus 124 ~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~ 155 (223)
..........+.++..+++|++++++.+++..
T Consensus 94 ~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~ 125 (132)
T cd04677 94 TKVFGGKLVPDGDETLELKFFSLDELPELINP 125 (132)
T ss_pred EeccCCcccCCCCceeeEEEEChhHCccchhH
Confidence 44433222234456678999999999877654
No 28
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=1.1e-17 Score=127.75 Aligned_cols=103 Identities=23% Similarity=0.235 Sum_probs=74.3
Q ss_pred EEEEEEeCCCCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEEEEEEec
Q 027463 48 LVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVT 127 (223)
Q Consensus 48 ~VLLv~r~~~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~ 127 (223)
+|||+++...+.|.+|||+++.|||+.+||.||+.||||+.+... ..++.+.+..... +.......++|.+...
T Consensus 13 ~vLl~~~~~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~f~~~~~ 86 (126)
T cd04688 13 KLLVQKNPDETFYRPPGGGIEFGESSEEALIREFKEELGLKIEIT-RLLGVVENIFTYN-----GKPGHEIEFYYLVTLL 86 (126)
T ss_pred EEEEEEeCCCCeEECCCccccCCCCHHHHHHHHHHHHhCCceecc-eeeEEEEEeeccC-----CcccEEEEEEEEEEeC
Confidence 799998877678999999999999999999999999999998766 3666654222111 1112345678888776
Q ss_pred ccccCC-------CCcCcceeEEEeHHHHhhccCCh
Q 027463 128 EELESW-------PEQANYKRIWLSVEEAFKSCRYD 156 (223)
Q Consensus 128 ~~~~~~-------~~~e~~~~~W~~~~e~~~~l~~~ 156 (223)
+..... ++.+..+++|++++++..+...|
T Consensus 87 ~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~p 122 (126)
T cd04688 87 DESLYQQDIEILEEEGEKIVFRWIPIDELKEIKLYP 122 (126)
T ss_pred CCcccccccceeccCCCEEEEEEeeHHHcccCccCC
Confidence 533211 23456788999999998665444
No 29
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.77 E-value=1.1e-17 Score=127.73 Aligned_cols=97 Identities=23% Similarity=0.199 Sum_probs=69.3
Q ss_pred EEEEEEeCCCCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEEEEEEec
Q 027463 48 LVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVT 127 (223)
Q Consensus 48 ~VLLv~r~~~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~ 127 (223)
+|||++++..+.|.+|||++|+|||+.+||+||++||||+++... .+++.+.+...... .......++|.+...
T Consensus 13 ~vLlv~~~~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~-~~l~~~~~~~~~~~-----~~~~~~~~~f~~~~~ 86 (125)
T cd04689 13 KVLLARVIGQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDG-RFLGAIENQWHEKG-----VRTHEINHIFAVESS 86 (125)
T ss_pred EEEEEEecCCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeecc-EEEEEEeeeeccCC-----ceEEEEEEEEEEEcc
Confidence 799999987788999999999999999999999999999998765 36666543322111 111234567777654
Q ss_pred ccc---cCCCCcCcceeEEEeHHHHh
Q 027463 128 EEL---ESWPEQANYKRIWLSVEEAF 150 (223)
Q Consensus 128 ~~~---~~~~~~e~~~~~W~~~~e~~ 150 (223)
... ....+++..+++|++++++.
T Consensus 87 ~~~~~~~~~~~~e~~~~~W~~~~el~ 112 (125)
T cd04689 87 WLASDGPPQADEDHLSFSWVPVSDLS 112 (125)
T ss_pred cccccCCccCccceEEEEEccHHHcc
Confidence 321 12223345788999999964
No 30
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=7.9e-18 Score=128.99 Aligned_cols=111 Identities=20% Similarity=0.105 Sum_probs=78.6
Q ss_pred ceeEEEEEEEeccCCccccccccCCceEEEEEEeCC---CCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCee
Q 027463 21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG 97 (223)
Q Consensus 21 ~r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~---~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~ 97 (223)
+|.++++|+++.++ +|||++|.. .+.|.+|||+++.|||+.+||+||++||||+++... ..++
T Consensus 1 p~~~v~~ii~~~~~-------------~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~-~~~~ 66 (129)
T cd04678 1 PRVGVGVFVLNPKG-------------KVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENV-QFLT 66 (129)
T ss_pred CceEEEEEEECCCC-------------eEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccce-EEEE
Confidence 47788898887643 799998873 567999999999999999999999999999997655 2555
Q ss_pred EEEeeccCCCccCCCCCCceEEEEEEEEecccccCC---CCcCcceeEEEeHHHHhhc
Q 027463 98 EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESW---PEQANYKRIWLSVEEAFKS 152 (223)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~---~~~e~~~~~W~~~~e~~~~ 152 (223)
.+....... .......+|.+......... ..++..+++|++++++.++
T Consensus 67 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 67 VTNDVFEEE-------GKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV 117 (129)
T ss_pred EEeEEeCCC-------CcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence 543222111 12345667767665432211 1234457899999999875
No 31
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=1.1e-17 Score=127.89 Aligned_cols=112 Identities=18% Similarity=0.225 Sum_probs=73.7
Q ss_pred eEEEEEEEeccCCccccccccCCceEEEEEEeCC--CCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEE
Q 027463 23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE 100 (223)
Q Consensus 23 ~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~--~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~ 100 (223)
..+++++++.+ .+|||++++. .+.|.+|||+++.|||+.+||+||++||||+.+.... .++...
T Consensus 3 ~~~~~~v~~~~-------------~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~-~~~~~~ 68 (127)
T cd04670 3 VGVGGLVLNEK-------------NEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVS-VVGFRH 68 (127)
T ss_pred eEEEEEEEcCC-------------CeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeE-EEEEEe
Confidence 45667777643 3799999877 5789999999999999999999999999999876552 333332
Q ss_pred eeccCCCccCCCCCCceEEEEEEEEeccc-cc-CCCCcCcceeEEEeHHHHhhccCChH
Q 027463 101 FRSKSRMNSCNSKEGGCRGYMFALEVTEE-LE-SWPEQANYKRIWLSVEEAFKSCRYDW 157 (223)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~f~~~v~~~-~~-~~~~~e~~~~~W~~~~e~~~~l~~~~ 157 (223)
+..... .....+|.+.+... .. ....++..+++|++++++.+......
T Consensus 69 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~ 118 (127)
T cd04670 69 AHPGAF---------GKSDLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPITSE 118 (127)
T ss_pred cCCCCc---------CceeEEEEEEEccCcCcCCCChhhhheeEEEcHHHHhcchhHHH
Confidence 211111 11223455544321 11 11234556789999999976544433
No 32
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=5.7e-18 Score=127.63 Aligned_cols=100 Identities=22% Similarity=0.239 Sum_probs=72.7
Q ss_pred EEEEEEeCCCCCeecCCcccCCCCCHHHHHHHHHHHHhCceeee--cCCCeeEEEeeccCCCccCCCCCCceEEEEEEEE
Q 027463 48 LVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLL--DENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALE 125 (223)
Q Consensus 48 ~VLLv~r~~~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 125 (223)
++||+++++.+.|.||||++++|||+.+||+||++||||+.+.. . ..++.+.+....... .....++|.+.
T Consensus 13 ~vLl~~r~~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~f~~~ 85 (118)
T cd04690 13 RVLLVRKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSL-EYLGTFRAPAANEPG------VDVRATVYVAE 85 (118)
T ss_pred eEEEEEECCCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhhe-EEEEEEecccccCCC------cEEEEEEEEEc
Confidence 89999998878899999999999999999999999999998755 3 255555443211110 13456777777
Q ss_pred ecccccCCCCcCcceeEEEeHHHHhhccCCh
Q 027463 126 VTEELESWPEQANYKRIWLSVEEAFKSCRYD 156 (223)
Q Consensus 126 v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~ 156 (223)
+.. ...+..+..+++|++++++......+
T Consensus 86 ~~~--~~~~~~e~~~~~W~~~~e~~~~~~~~ 114 (118)
T cd04690 86 LTG--EPVPAAEIEEIRWVDYDDPADDRLAP 114 (118)
T ss_pred ccC--CcCCCchhhccEEecHHHccccccCc
Confidence 655 22244566788999999986655444
No 33
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.76 E-value=1e-17 Score=131.92 Aligned_cols=113 Identities=20% Similarity=0.209 Sum_probs=80.9
Q ss_pred CCceeEEEEEEEeccCCccccccccCCceEEEEEEeCCC---CCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCC
Q 027463 19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR---DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENP 95 (223)
Q Consensus 19 ~~~r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~---~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~ 95 (223)
+.++..+++++.+.+ +|||++|... +.|.+|||++|.|||+++||.||++||||+++... ..
T Consensus 7 ~~p~~~v~~~i~~~~--------------~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~-~~ 71 (145)
T COG1051 7 RTPLVAVGALIVRNG--------------RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVL-EL 71 (145)
T ss_pred CCcceeeeEEEEeCC--------------EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccce-eE
Confidence 467778888888753 7999999765 67999999999999999999999999999997766 37
Q ss_pred eeEEEeeccCCCccCCCCCCceEEEEEEEEe-cccccCCCCcCcceeEEEeHHHHhhcc
Q 027463 96 LGEWEFRSKSRMNSCNSKEGGCRGYMFALEV-TEELESWPEQANYKRIWLSVEEAFKSC 153 (223)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v-~~~~~~~~~~e~~~~~W~~~~e~~~~l 153 (223)
+++++....+... ++..++|.+.. .+.......++...+.|++++++....
T Consensus 72 ~~v~~~~~rd~r~-------~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~~~~ 123 (145)
T COG1051 72 LAVFDDPGRDPRG-------HHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELPELP 123 (145)
T ss_pred EEEecCCCCCCce-------eEEEEEEEEEecCCCcccCChhhHhhcceecHhHccccc
Confidence 7777655433111 22333343333 333332222355678999999998753
No 34
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.76 E-value=9.8e-18 Score=129.09 Aligned_cols=112 Identities=20% Similarity=0.223 Sum_probs=80.9
Q ss_pred cCCceeEEEEEEEeccCCccccccccCCceEEEEEEeC---CCCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCC
Q 027463 18 EDQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTP---NRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDEN 94 (223)
Q Consensus 18 ~~~~r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~---~~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~ 94 (223)
.++++.++++|+++. ++|||++|. ..+.|.+|||+++.||++++||+||++||||+.+... .
T Consensus 9 ~~~~~~~v~~ii~~~--------------~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~-~ 73 (130)
T cd04511 9 YQNPKIIVGCVPEWE--------------GKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEID-G 73 (130)
T ss_pred CCCCcEEEEEEEecC--------------CEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEee-e
Confidence 367788888888764 279999985 3467999999999999999999999999999998655 3
Q ss_pred CeeEEEeeccCCCccCCCCCCceEEEEEEEEecccccCCCCcCcceeEEEeHHHHh-hccCCh
Q 027463 95 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAF-KSCRYD 156 (223)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~W~~~~e~~-~~l~~~ 156 (223)
.++.+.+.. . ....++|.+.+.... ..+..+..+++|++++++. +.+.++
T Consensus 74 ~~~~~~~~~--~---------~~~~~~f~~~~~~~~-~~~~~e~~~~~~~~~~~l~~~~l~~~ 124 (130)
T cd04511 74 LYAVYSVPH--I---------SQVYMFYRARLLDLD-FAPGPESLEVRLFTEEEIPWDELAFP 124 (130)
T ss_pred EEEEEecCC--c---------eEEEEEEEEEEcCCc-ccCCcchhceEEECHHHCCchhcccc
Confidence 555544321 1 134677777775432 1234456788999999996 234444
No 35
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=2e-17 Score=123.99 Aligned_cols=98 Identities=24% Similarity=0.213 Sum_probs=71.0
Q ss_pred EEEEEEeCCCCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEEEEEEec
Q 027463 48 LVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVT 127 (223)
Q Consensus 48 ~VLLv~r~~~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~ 127 (223)
+|||+++.. +.|.+|||++++|||+.+||.||++||||+.+.... .++.+. .. ....++|.+.+.
T Consensus 12 ~vLlv~r~~-~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~-~~~~~~--~~-----------~~~~~~f~~~~~ 76 (112)
T cd04667 12 RVLLVRKSG-SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLL-YLFHVD--GG-----------STRHHVFVASVP 76 (112)
T ss_pred EEEEEEcCC-CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceE-EEEEEe--CC-----------CEEEEEEEEEcC
Confidence 799998864 789999999999999999999999999999864331 333332 11 123466777655
Q ss_pred ccccCCCCcCcceeEEEeHHHHhhccCChHHHH
Q 027463 128 EELESWPEQANYKRIWLSVEEAFKSCRYDWMID 160 (223)
Q Consensus 128 ~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~~~~ 160 (223)
......+.++..+++|++++++.++..++..+.
T Consensus 77 ~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~ 109 (112)
T cd04667 77 PSAQPKPSNEIADCRWLSLDALGDLNASAATRL 109 (112)
T ss_pred CcCCCCCchheeEEEEecHHHhhhcccchhhhh
Confidence 433333455667889999999998877654443
No 36
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=4e-17 Score=126.09 Aligned_cols=111 Identities=25% Similarity=0.377 Sum_probs=74.8
Q ss_pred EEEEEEEeccCCccccccccCCceEEEEEEeCCCCCeecCCcccCCCCCHHHHHHHHHHHHhCceee-ecCCCeeEEEe-
Q 027463 24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGL-LDENPLGEWEF- 101 (223)
Q Consensus 24 ~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~-~~~~~l~~~~~- 101 (223)
++++|+++.+ +|||+++++.+.|.||||++|+|||+.+||+||++||||+.+. .. ..++.+..
T Consensus 2 ~~~~ii~~~~--------------~vLLv~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~-~~l~~~~~~ 66 (131)
T cd04686 2 AVRAIILQGD--------------KILLLYTKRYGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVI-EKFGTYTER 66 (131)
T ss_pred cEEEEEEECC--------------EEEEEEEcCCCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccc-eEEEEEEee
Confidence 4677777742 7999999876789999999999999999999999999999863 33 35665532
Q ss_pred eccCCCccCCCCCCceEEEEEEEEeccccc--CCCCcC---cceeEEEeHHHHhhc
Q 027463 102 RSKSRMNSCNSKEGGCRGYMFALEVTEELE--SWPEQA---NYKRIWLSVEEAFKS 152 (223)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~--~~~~~e---~~~~~W~~~~e~~~~ 152 (223)
....... +.......++|.+.+..... .....+ ...+.|++++++...
T Consensus 67 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~ 119 (131)
T cd04686 67 RPWRKPD---ADIFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEH 119 (131)
T ss_pred ccccCCC---CceeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHh
Confidence 2111110 11223456788887654321 111111 135799999999754
No 37
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=3.7e-17 Score=124.52 Aligned_cols=105 Identities=25% Similarity=0.284 Sum_probs=73.2
Q ss_pred EEEEEEeccCCccccccccCCceEEEEEEeCCC--CCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEee
Q 027463 25 AGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR--DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFR 102 (223)
Q Consensus 25 ~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~--~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~ 102 (223)
+++|+++.+ ++|||++|.+. +.|.||||+++.|||+.+||+||++||||+++.+. ..++.+.+.
T Consensus 3 ~~~ii~~~~-------------~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~-~~~~~~~~~ 68 (121)
T cd04669 3 ASIVIINDQ-------------GEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVE-EIFLIVNQN 68 (121)
T ss_pred eEEEEEeCC-------------CEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeee-eEEEEEeeC
Confidence 667777642 38999998654 46999999999999999999999999999998765 355555541
Q ss_pred ccCCCccCCCCCCceEEEEEEEEecc-cccC-C-------CCcCcceeEEEeHHHHhhccCCh
Q 027463 103 SKSRMNSCNSKEGGCRGYMFALEVTE-ELES-W-------PEQANYKRIWLSVEEAFKSCRYD 156 (223)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~f~~~v~~-~~~~-~-------~~~e~~~~~W~~~~e~~~~l~~~ 156 (223)
+ ...++|.+.... .... . .+.+..+++|++++++..+...|
T Consensus 69 --~-----------~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~~~p 118 (121)
T cd04669 69 --G-----------RTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPLRP 118 (121)
T ss_pred --C-----------cEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccCCCCC
Confidence 1 134566665432 2111 0 12234568999999998775544
No 38
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.74 E-value=6e-17 Score=126.30 Aligned_cols=115 Identities=20% Similarity=0.243 Sum_probs=70.6
Q ss_pred EEEEEEeCCC-----CCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccC-CCCCC-ceEE-
Q 027463 48 LVLMISTPNR-----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSC-NSKEG-GCRG- 119 (223)
Q Consensus 48 ~VLLv~r~~~-----~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~-~~~~~-~~~~- 119 (223)
+|||++|... +.|.+|||++|+|||+.+||+||++||||+++.... +..+.|........+ ++... .+..
T Consensus 16 ~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (141)
T PRK15472 16 AYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTE--ITPWTFRDDIRTKTYADGRKEEIYMIY 93 (141)
T ss_pred EEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeee--eccccccccceeEEecCCCceeEEEEE
Confidence 7999987542 679999999999999999999999999999865431 111111100000000 01110 1111
Q ss_pred EEEEEEecccccCCCCcCcceeEEEeHHHHhhccCChHHHHHHHHH
Q 027463 120 YMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDALKKF 165 (223)
Q Consensus 120 ~~f~~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~~~~~l~~~ 165 (223)
++|.+..... ...+.+|..+++|++++++.++...+..+..+..+
T Consensus 94 ~~~~~~~~~~-~~~~~~E~~~~~w~~~~el~~l~~~~~~~~~~~~~ 138 (141)
T PRK15472 94 LIFDCVSANR-DVKINEEFQDYAWVKPEDLVHYDLNVATRKTLRLK 138 (141)
T ss_pred EEEEeecCCC-cccCChhhheEEEccHHHhccccccHHHHHHHHHh
Confidence 2233332221 22234566789999999999987777777766554
No 39
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.73 E-value=4.2e-17 Score=126.18 Aligned_cols=112 Identities=21% Similarity=0.132 Sum_probs=77.5
Q ss_pred eEEEEEEEeccCCccccccccCCceEEEEEEeCCC----CCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeE
Q 027463 23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGE 98 (223)
Q Consensus 23 ~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~----~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~ 98 (223)
.++++++++.+ .+|||+++... +.|.+|||+++.|||+.+||+||++||||+.+... ..++.
T Consensus 3 ~~v~v~~~~~~-------------~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~-~~~~~ 68 (137)
T cd03424 3 DAVAVLPYDDD-------------GKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDL-EKLGS 68 (137)
T ss_pred CEEEEEEEcCC-------------CeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccce-EEEee
Confidence 35667777654 38999987532 35999999999999999999999999999997533 24554
Q ss_pred EEeeccCCCccCCCCCCceEEEEEEEEecccc--cCCCCcCcceeEEEeHHHHhhccCChH
Q 027463 99 WEFRSKSRMNSCNSKEGGCRGYMFALEVTEEL--ESWPEQANYKRIWLSVEEAFKSCRYDW 157 (223)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~--~~~~~~e~~~~~W~~~~e~~~~l~~~~ 157 (223)
+.+.. .. ....+++|.+...... ....+.|..+++|++++++.+++....
T Consensus 69 ~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~ 120 (137)
T cd03424 69 FYPSP-GF--------SDERIHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLADGE 120 (137)
T ss_pred EecCC-cc--------cCccEEEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHcCC
Confidence 43321 11 1124556666655432 122344667889999999998876654
No 40
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.73 E-value=1.1e-16 Score=123.42 Aligned_cols=110 Identities=18% Similarity=0.170 Sum_probs=78.4
Q ss_pred EEEEEEeCCC----CCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEEEE
Q 027463 48 LVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFA 123 (223)
Q Consensus 48 ~VLLv~r~~~----~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~ 123 (223)
+|||++|+.+ +.|.||||+++.|||+.+||+||++||||+.+... .+++.+.+...+. ....++|.
T Consensus 16 ~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~-~~~~~~~~~~~~~---------~~~~~~~~ 85 (135)
T PRK10546 16 KILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVG-EYVASHQREVSGR---------RIHLHAWH 85 (135)
T ss_pred EEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccc-eeEEEEEEecCCc---------EEEEEEEE
Confidence 7999988653 56999999999999999999999999999997655 3566555443222 12344555
Q ss_pred EEecccccCCCCcCcceeEEEeHHHHhhccCChHHHHHHHHHHHHh
Q 027463 124 LEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDALKKFLLGM 169 (223)
Q Consensus 124 ~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~~~~~l~~~~~~l 169 (223)
+....... ...+..+++|++++++.++...+.++.++..+.+..
T Consensus 86 ~~~~~~~~--~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~ 129 (135)
T PRK10546 86 VPDFHGEL--QAHEHQALVWCTPEEALRYPLAPADIPLLEAFMALR 129 (135)
T ss_pred EEEecCcc--cccccceeEEcCHHHcccCCCCcCcHHHHHHHHHhh
Confidence 44332111 122445789999999998877787888887776553
No 41
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.73 E-value=6.5e-17 Score=125.17 Aligned_cols=108 Identities=20% Similarity=0.287 Sum_probs=73.7
Q ss_pred ceEEEEEEeCCC--CCeecCCcccCCCCCHHHHHHHHHHHHhCceeeec---CCCeeEEEeeccCCCccCCCCCCceEEE
Q 027463 46 KVLVLMISTPNR--DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLD---ENPLGEWEFRSKSRMNSCNSKEGGCRGY 120 (223)
Q Consensus 46 ~~~VLLv~r~~~--~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 120 (223)
..++||+++... +.|.||||++|+|||+.+||+||++||||+.+.+. ..+++.+.|..+..... .......++
T Consensus 12 ~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 89 (132)
T cd04661 12 DTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRN--EGIVGAKVF 89 (132)
T ss_pred CcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCccccc--ccCcccEEE
Confidence 458999998643 57999999999999999999999999999976542 11334444432211100 111234678
Q ss_pred EEEEEecccccCCCCcCcceeEEEeHHHHhhccCCh
Q 027463 121 MFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYD 156 (223)
Q Consensus 121 ~f~~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~ 156 (223)
+|.+...+.... +..+..+++|++++++.+++...
T Consensus 90 ~f~~~~~~g~~~-~~~e~~~~~W~~~~el~~~l~~~ 124 (132)
T cd04661 90 FFKARYMSGQFE-LSQNQVDFKWLAKEELQKYLNPP 124 (132)
T ss_pred EEEEEEecCccc-cCCCcceeEecCHHHHHhhcCHH
Confidence 888876543221 33566789999999999977643
No 42
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=6.2e-17 Score=123.12 Aligned_cols=97 Identities=21% Similarity=0.122 Sum_probs=67.7
Q ss_pred EEEEEEeCCC------CCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEE
Q 027463 48 LVLMISTPNR------DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYM 121 (223)
Q Consensus 48 ~VLLv~r~~~------~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (223)
+|||++|... +.|.+|||+++.|||+++||+||+.||||+++.... ......|..... ....++
T Consensus 13 ~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~-~~~~~~~~~~~~---------~~~~~~ 82 (122)
T cd04682 13 RLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESR-IPWFRVYPSASP---------PGTEHV 82 (122)
T ss_pred EEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccc-cceeEecccCCC---------CceEEE
Confidence 7999988643 579999999999999999999999999999975432 222222222111 134567
Q ss_pred EEEEecccc-cCCCCcCcceeEEEeHHHHhhccC
Q 027463 122 FALEVTEEL-ESWPEQANYKRIWLSVEEAFKSCR 154 (223)
Q Consensus 122 f~~~v~~~~-~~~~~~e~~~~~W~~~~e~~~~l~ 154 (223)
|.+...... .....++..+++|++++++.+...
T Consensus 83 f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~ 116 (122)
T cd04682 83 FVVPLTAREDAILFGDEGQALRLMTVEEFLAHED 116 (122)
T ss_pred EEEEEecCCCccccCchhheeecccHHHHhhccc
Confidence 776655432 223445667899999999976543
No 43
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=5.8e-17 Score=122.57 Aligned_cols=98 Identities=21% Similarity=0.237 Sum_probs=66.9
Q ss_pred EEEEEEeCC----CCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecC-CCeeEEEeeccCCCccCCCCCCceEEEEE
Q 027463 48 LVLMISTPN----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE-NPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122 (223)
Q Consensus 48 ~VLLv~r~~----~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 122 (223)
+|||++|.. .+.|.+|||+++.|||+.+||+||++||||+.+.... .+++.+.+..... .....++|
T Consensus 12 ~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~--------~~~~~~~f 83 (120)
T cd04683 12 EVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDI--------ESRIGLFF 83 (120)
T ss_pred EEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCC--------ceEEEEEE
Confidence 799998864 3569999999999999999999999999999876321 1455544332211 12345667
Q ss_pred EEEecc-cccCCCCcCcceeEEEeHHHHhhcc
Q 027463 123 ALEVTE-ELESWPEQANYKRIWLSVEEAFKSC 153 (223)
Q Consensus 123 ~~~v~~-~~~~~~~~e~~~~~W~~~~e~~~~l 153 (223)
.+.... .......++..+++|++++++...+
T Consensus 84 ~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~ 115 (120)
T cd04683 84 TVRRWSGEPRNCEPDKCAELRWFPLDALPDDT 115 (120)
T ss_pred EEEeecCccccCCCCcEeeEEEEchHHCcchh
Confidence 665432 2222223456689999999997654
No 44
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.72 E-value=1.8e-16 Score=126.17 Aligned_cols=134 Identities=23% Similarity=0.244 Sum_probs=86.3
Q ss_pred CceeEEEEEEEeccCCccccccccCCceEEEEEEeCCC-CCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeE
Q 027463 20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGE 98 (223)
Q Consensus 20 ~~r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~-~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~ 98 (223)
+.|.++++++++.++ +|||+++... +.|.+|||++++|||+.+||.||++||||+.+.... .++.
T Consensus 6 ~~~~~v~~~i~~~~g-------------~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~-~~~~ 71 (156)
T PRK00714 6 GYRPNVGIILLNRQG-------------QVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVE-ILAE 71 (156)
T ss_pred CCCCeEEEEEEecCC-------------EEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceE-EEEE
Confidence 578888898888653 7999998654 679999999999999999999999999999865432 3443
Q ss_pred ----EEeeccCCCc--cCCCCCCceEEEEEEEEecc---cccC--CCCcCcceeEEEeHHHHhhccCChHHHHHHHHHHH
Q 027463 99 ----WEFRSKSRMN--SCNSKEGGCRGYMFALEVTE---ELES--WPEQANYKRIWLSVEEAFKSCRYDWMIDALKKFLL 167 (223)
Q Consensus 99 ----~~~~~~~~~~--~~~~~~~~~~~~~f~~~v~~---~~~~--~~~~e~~~~~W~~~~e~~~~l~~~~~~~~l~~~~~ 167 (223)
+.|..+.... ..++. .....++|.+.... .... .+++|..+++|++++++.+.+. +.-+.++..+..
T Consensus 72 ~~~~~~y~~~~~~~~~~~~~~-~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~-~~~r~~~~~~~~ 149 (156)
T PRK00714 72 TRDWLRYDLPKRLVRRSKGVY-RGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVV-PFKRDVYRRVLK 149 (156)
T ss_pred cCCeEEecCcHHHhhccCCcc-cCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhch-hhhHHHHHHHHH
Confidence 2232221100 00011 11245677776532 1111 1234667889999999998764 223455555444
Q ss_pred Hh
Q 027463 168 GM 169 (223)
Q Consensus 168 ~l 169 (223)
.+
T Consensus 150 ~~ 151 (156)
T PRK00714 150 EF 151 (156)
T ss_pred HH
Confidence 43
No 45
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.72 E-value=1e-16 Score=123.88 Aligned_cols=94 Identities=20% Similarity=0.156 Sum_probs=67.5
Q ss_pred eEEEEEEeCC--CCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEEEEE
Q 027463 47 VLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFAL 124 (223)
Q Consensus 47 ~~VLLv~r~~--~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 124 (223)
++|||++|+. .+.|.+|||+++.|||+.+||+||++||||+.+... .+++.+.+... .....+|.+
T Consensus 12 ~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~-~~l~~~~~~~~-----------~~~~~~f~~ 79 (131)
T cd03429 12 DRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNI-RYVGSQPWPFP-----------SSLMLGFTA 79 (131)
T ss_pred CEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeee-EEEeecCCCCC-----------ceEEEEEEE
Confidence 4899999875 467999999999999999999999999999997655 24554333221 123456666
Q ss_pred EecccccCCCCcCcceeEEEeHHHHhhc
Q 027463 125 EVTEELESWPEQANYKRIWLSVEEAFKS 152 (223)
Q Consensus 125 ~v~~~~~~~~~~e~~~~~W~~~~e~~~~ 152 (223)
.+.........++..+++|++++++.++
T Consensus 80 ~~~~~~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 80 EADSGEIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred EEcCCcccCCchhhhccEeecHHHHhhc
Confidence 6554222212345577899999999874
No 46
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=8.7e-17 Score=121.76 Aligned_cols=94 Identities=21% Similarity=0.184 Sum_probs=65.9
Q ss_pred EEEEEEeCC-----CCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEEE
Q 027463 48 LVLMISTPN-----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122 (223)
Q Consensus 48 ~VLLv~r~~-----~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 122 (223)
+|||++|.. .+.|.||||++++|||+.+||+||++||||+.+... ..++.+.+... . ....++|
T Consensus 12 ~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~-~~l~~~~~~~~-~---------~~~~~~~ 80 (117)
T cd04691 12 KVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSY-TYLCSLYHPTS-E---------LQLLHYY 80 (117)
T ss_pred EEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccc-eEEEEEeccCC-C---------eEEEEEE
Confidence 799999853 357999999999999999999999999999985433 24444433211 1 1345666
Q ss_pred EEEecccccCCCCcCcceeEEEeHHHHhhccC
Q 027463 123 ALEVTEELESWPEQANYKRIWLSVEEAFKSCR 154 (223)
Q Consensus 123 ~~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~ 154 (223)
.+....... ..+|..+++|+++++++....
T Consensus 81 ~~~~~~~~~--~~~E~~~~~W~~~~~l~~~~~ 110 (117)
T cd04691 81 VVTFWQGEI--PAQEAAEVHWMTANDIVLASE 110 (117)
T ss_pred EEEEecCCC--CcccccccEEcCHHHcchhhh
Confidence 665433211 235667899999999976543
No 47
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=6.5e-17 Score=123.78 Aligned_cols=104 Identities=22% Similarity=0.271 Sum_probs=71.9
Q ss_pred EEEEEEEeccCCccccccccCCceEEEEEEeCCC---CCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEE
Q 027463 24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR---DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE 100 (223)
Q Consensus 24 ~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~---~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~ 100 (223)
++++++++.+ ++|||+++... +.|.+|||+++.|||+.+||+||++||||+++...+ .++...
T Consensus 2 ~~~~vv~~~~-------------~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~-~~~~~~ 67 (123)
T cd04671 2 IVAAVILNNQ-------------GEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTT-LLSVEE 67 (123)
T ss_pred EEEEEEEcCC-------------CEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecce-EEEEEc
Confidence 4667777543 38999988543 569999999999999999999999999999987663 444322
Q ss_pred eeccCCCccCCCCCCceEEEEEEEEeccc-ccCC--CCcCcceeEEEeHHHHhhcc
Q 027463 101 FRSKSRMNSCNSKEGGCRGYMFALEVTEE-LESW--PEQANYKRIWLSVEEAFKSC 153 (223)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~f~~~v~~~-~~~~--~~~e~~~~~W~~~~e~~~~l 153 (223)
. . . ....++|.+...+. .... ++.+..+++|+++++++..+
T Consensus 68 ~-~----~-------~~~~~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el~~~~ 111 (123)
T cd04671 68 Q-G----G-------SWFRFVFTGNITGGDLKTEKEADSESLQARWYSNKDLPLPL 111 (123)
T ss_pred c-C----C-------eEEEEEEEEEEeCCeEccCCCCCcceEEEEEECHHHCCCcc
Confidence 1 1 1 12456777765432 2211 23345689999999994333
No 48
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.71 E-value=1.1e-16 Score=127.45 Aligned_cols=110 Identities=17% Similarity=0.076 Sum_probs=73.3
Q ss_pred eEEEEEEEeccCCccccccccCCceEEEEEEeCC-----CCCeecCCcccCCC-CCHHHHHHHHHHHHhCceeeecCCCe
Q 027463 23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFPKGGWEDD-ETVSEAACREALEEAGVRGLLDENPL 96 (223)
Q Consensus 23 ~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~-----~~~W~lPGG~vE~g-Es~~eAA~REl~EEtGl~~~~~~~~l 96 (223)
.++.+|++...+ +..+|||++|.. .+.|.+|||++++| ||+.+||+||++||||+.+... ..+
T Consensus 2 ~~av~v~l~~~~----------~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~-~~l 70 (157)
T cd03426 2 RAAVLVLLVERE----------GELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSV-EVL 70 (157)
T ss_pred ceEEEEEEEeCC----------CceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccce-EEE
Confidence 456666666543 346899999865 35799999999999 9999999999999999987654 244
Q ss_pred eEEEeeccCCCccCCCCCCceEEEEEEEEeccccc-CCCCcCcceeEEEeHHHHhhc
Q 027463 97 GEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELE-SWPEQANYKRIWLSVEEAFKS 152 (223)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~-~~~~~e~~~~~W~~~~e~~~~ 152 (223)
+.+....... ...+++|.+.+..... ....+|..++.|++++++.+.
T Consensus 71 ~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 118 (157)
T cd03426 71 GRLPPYYTRS---------GFVVTPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLDP 118 (157)
T ss_pred EECCCccccC---------CCEEEEEEEEECCCCCCCCCHHHhheeEEEcHHHHhCc
Confidence 4432111111 1234455555544211 112236678899999999774
No 49
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=2.3e-16 Score=120.88 Aligned_cols=110 Identities=19% Similarity=0.196 Sum_probs=75.8
Q ss_pred EEEEEEEeccCCccccccccCCceEEEEEEeCCC-----CCeec-CCcccCCCCCHHHHHHHHHHHHhCceeeecCCCee
Q 027463 24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVF-PKGGWEDDETVSEAACREALEEAGVRGLLDENPLG 97 (223)
Q Consensus 24 ~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~-----~~W~l-PGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~ 97 (223)
++.+++++.+ ++|||++|... +.|.+ |||+++.||++.+||+||++||||+.+... ..++
T Consensus 2 ~~~v~i~~~~-------------~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l-~~~~ 67 (126)
T cd04697 2 ATYIFVFNSE-------------GKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQL-TPLG 67 (126)
T ss_pred eEEEEEEcCC-------------CeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCcccc-EEee
Confidence 4567777654 37998887532 45988 699999999999999999999999987633 2556
Q ss_pred EEEeeccCCCccCCCCCCceEEEEEEEEecccccCCCCcCcceeEEEeHHHHhhccCChH
Q 027463 98 EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDW 157 (223)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~ 157 (223)
.+.+..... .....+|.+....... ...+|..+++|++++++.+++....
T Consensus 68 ~~~~~~~~~---------~~~~~~f~~~~~~~~~-~~~~E~~~~~w~~~~el~~~~~~~~ 117 (126)
T cd04697 68 LFYYDTDGN---------RVWGKVFSCVYDGPLK-LQEEEVEEITWLSINEILQFKEGEN 117 (126)
T ss_pred EEEecCCCc---------eEEEEEEEEEECCCCC-CCHhHhhheEEcCHHHHHHHhhcCc
Confidence 665533211 1234566665543322 2334567899999999998876543
No 50
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.68 E-value=1.5e-15 Score=135.15 Aligned_cols=127 Identities=20% Similarity=0.212 Sum_probs=84.1
Q ss_pred CceeEEEEEEEeccCCccccccccCCceEEEEEEeCC---CCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCe
Q 027463 20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPL 96 (223)
Q Consensus 20 ~~r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~---~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l 96 (223)
.+...+++|+++. ++|||++|.. .+.|.+|||++++|||+++||+||++||||+++.... ..
T Consensus 201 ~~~vtv~avv~~~--------------g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~-l~ 265 (340)
T PRK05379 201 PTFVTVDAVVVQS--------------GHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPV-LR 265 (340)
T ss_pred CcceEEEEEEEEC--------------CEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccc-cc
Confidence 3456777777753 2799999865 3569999999999999999999999999999865442 22
Q ss_pred eEE----EeeccCCCccCCCCCCceEEEEEEEEeccc--ccCCCCcCcceeEEEeHHHHhhc--cCChHHHHHHHHHH
Q 027463 97 GEW----EFRSKSRMNSCNSKEGGCRGYMFALEVTEE--LESWPEQANYKRIWLSVEEAFKS--CRYDWMIDALKKFL 166 (223)
Q Consensus 97 ~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~--~~~~~~~e~~~~~W~~~~e~~~~--l~~~~~~~~l~~~~ 166 (223)
+.+ .|..+... .......++|.+.+... ......++..+++|++++++..+ ..+.++..++..++
T Consensus 266 ~~~~~~~~f~~p~r~-----~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~~~~~~~dh~~ii~~~~ 338 (340)
T PRK05379 266 GSIRDQQVFDHPGRS-----LRGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLAMRDRMFEDHFQIITHFL 338 (340)
T ss_pred eeeeeeEEEcCCCCC-----CCCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhhhhhhhhhHHHHHHHHHh
Confidence 222 22222211 11233455665555422 22224456678999999999875 45566777776654
No 51
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.68 E-value=8.1e-16 Score=123.36 Aligned_cols=115 Identities=16% Similarity=0.072 Sum_probs=78.5
Q ss_pred eeEEEEEEEeccCCccccccccCCceEEEEEEeCCC-----CCeecC-CcccCCCCCHHHHHHHHHHHHhCceeeecCCC
Q 027463 22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVFP-KGGWEDDETVSEAACREALEEAGVRGLLDENP 95 (223)
Q Consensus 22 r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~-----~~W~lP-GG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~ 95 (223)
+.++++++++.+ ++|||++|... +.|.+| ||++++|||+++||+||++||||+.+.... .
T Consensus 30 ~~~v~v~i~~~~-------------~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~-~ 95 (165)
T cd02885 30 HRAFSVFLFNSK-------------GRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLE-L 95 (165)
T ss_pred eeEEEEEEEcCC-------------CcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchh-h
Confidence 777777777643 37999887542 458886 899999999999999999999999977653 4
Q ss_pred e-eEEEeeccCCCccCCCCCCceEEEEEEEEecccccCCCCcCcceeEEEeHHHHhhccCC
Q 027463 96 L-GEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRY 155 (223)
Q Consensus 96 l-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~ 155 (223)
+ +.+.|....... .......++|.+........ ..+|..+++|++++++.+++..
T Consensus 96 ~~~~~~~~~~~~~~----~~~~~i~~~f~~~~~~~~~~-~~~Ev~~~~w~~~~el~~~~~~ 151 (165)
T cd02885 96 VLPRFRYRAPDDGG----LVEHEIDHVFFARADVTLIP-NPDEVSEYRWVSLEDLKELVAA 151 (165)
T ss_pred ccceEEEEEEcCCC----ceeeEEEEEEEEEeCCCCCC-CccceeEEEEECHHHHHHHHHh
Confidence 3 555554322111 11122456676665443322 3345678899999999988754
No 52
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=4.3e-16 Score=119.20 Aligned_cols=98 Identities=20% Similarity=0.126 Sum_probs=65.2
Q ss_pred EEEEEEeCCC-----CCeecC-CcccCCCCCHHHHHHHHHHHHhCceeeecC-CCeeEEEeeccCCCccCCCCCCceEEE
Q 027463 48 LVLMISTPNR-----DDLVFP-KGGWEDDETVSEAACREALEEAGVRGLLDE-NPLGEWEFRSKSRMNSCNSKEGGCRGY 120 (223)
Q Consensus 48 ~VLLv~r~~~-----~~W~lP-GG~vE~gEs~~eAA~REl~EEtGl~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~ 120 (223)
+|||++|... +.|.+| ||+++.|||+ +||+||++||||+.+.... ..++.+.+.... ....+
T Consensus 13 ~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~----------~~~~~ 81 (127)
T cd04693 13 ELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAEG----------FDDYY 81 (127)
T ss_pred eEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecCC----------eEEEE
Confidence 7999887642 579998 9999999999 9999999999999976432 134444333211 12233
Q ss_pred EEEEEecccccCCCCcCcceeEEEeHHHHhhccCCh
Q 027463 121 MFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYD 156 (223)
Q Consensus 121 ~f~~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~ 156 (223)
+|.+...........+|..+++|++++++.+++...
T Consensus 82 ~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~ 117 (127)
T cd04693 82 LFYADVEIGKLILQKEEVDEVKFVSKDEIDGLIGHG 117 (127)
T ss_pred EEEecCcccccccCHHHhhhEEEeCHHHHHHHHhcC
Confidence 444333222112233456789999999999887654
No 53
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.67 E-value=5.3e-16 Score=118.93 Aligned_cols=58 Identities=31% Similarity=0.430 Sum_probs=50.2
Q ss_pred eEEEEEEEeccCCccccccccCCceEEEEEEe-------CCCCCeecCCcccCCCCCHHHHHHHHHHHHhCceee
Q 027463 23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMIST-------PNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGL 90 (223)
Q Consensus 23 ~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r-------~~~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~ 90 (223)
+++|+|+|+.+. +.++|||+++ +..+.|++|||+++.||++.+||+||++||||+++.
T Consensus 1 ~~~g~v~~~~~~----------~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 1 LSAGILLYRFRD----------GRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD 65 (126)
T ss_pred CeEEEEEEEEcC----------CcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence 468999999765 4678999985 344679999999999999999999999999999865
No 54
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.67 E-value=1.8e-15 Score=123.14 Aligned_cols=130 Identities=22% Similarity=0.221 Sum_probs=81.2
Q ss_pred CCceeEEEEEEEeccCCccccccccCCceEEEEEEeCCCC-----Ce-ecCCcccCCCCCHHHHHHHHHHHHhCceeeec
Q 027463 19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRD-----DL-VFPKGGWEDDETVSEAACREALEEAGVRGLLD 92 (223)
Q Consensus 19 ~~~r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~~-----~W-~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~ 92 (223)
++.+..+.++++... .++|||.+|...+ .| .+|||++++|||+.+||+||++||||+.....
T Consensus 33 ~~~~h~~~~v~v~~~------------~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~ 100 (180)
T PRK15393 33 QCLRHRATYIVVHDG------------MGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPF 100 (180)
T ss_pred CCCceEEEEEEEECC------------CCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccc
Confidence 455555555555443 2489998886432 24 68999999999999999999999999985443
Q ss_pred CCCeeEEEeeccCCCccCCCCCCceEEEEEEEEecccccCCCCcCcceeEEEeHHHHhhcc--CChHHHHHHHHHHHHhh
Q 027463 93 ENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSC--RYDWMIDALKKFLLGMN 170 (223)
Q Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l--~~~~~~~~l~~~~~~l~ 170 (223)
..++.+.|..... .....+|.+....... ...+|..+++|++++++.+++ ..+....++..++.+..
T Consensus 101 -~~~~~~~~~~~~~---------~~~~~~f~~~~~~~~~-~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~l~~~~ 169 (180)
T PRK15393 101 -AEHGQFYFEDENC---------RVWGALFSCVSHGPFA-LQEEEVSEVCWMTPEEITARCDEFTPDSLKALALWLTRNA 169 (180)
T ss_pred -eeceeEEecCCCc---------eEEEEEEEEEeCCCCC-CChHHeeEEEECCHHHHhhhhhhcCccHHHHHHHHHHhhc
Confidence 2456554432211 1223455554433222 123456788999999999874 22444455555554444
Q ss_pred h
Q 027463 171 T 171 (223)
Q Consensus 171 ~ 171 (223)
+
T Consensus 170 ~ 170 (180)
T PRK15393 170 K 170 (180)
T ss_pred c
Confidence 3
No 55
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.67 E-value=2.1e-15 Score=114.68 Aligned_cols=107 Identities=18% Similarity=0.134 Sum_probs=73.5
Q ss_pred eEEEEEEeCCC----CCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEEE
Q 027463 47 VLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122 (223)
Q Consensus 47 ~~VLLv~r~~~----~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 122 (223)
++|||++|+.. |.|.||||++++||++.+||.||++||||+.+... ..++.+.+..++. .....+|
T Consensus 16 ~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~-~~~~~~~~~~~~~---------~~~~~~~ 85 (129)
T PRK10776 16 NEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHA-TLFEKLEYEFPDR---------HITLWFW 85 (129)
T ss_pred CEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecc-eEEEEEEeeCCCc---------EEEEEEE
Confidence 37999998753 56999999999999999999999999999986544 2455555544322 1234556
Q ss_pred EEEecccccCCCCcCcceeEEEeHHHHhhccCChHHHHHHHHH
Q 027463 123 ALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDALKKF 165 (223)
Q Consensus 123 ~~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~~~~~l~~~ 165 (223)
.+....... ...+..+.+|++++++......+.++.++..+
T Consensus 86 ~~~~~~~~~--~~~e~~~~~W~~~~~l~~~~~p~~~~~~~~~~ 126 (129)
T PRK10776 86 LVESWEGEP--WGKEGQPGRWVSQVALNADEFPPANEPIIAKL 126 (129)
T ss_pred EEEEECCcc--CCccCCccEEecHHHCccCCCCcccHHHHHHH
Confidence 554332111 12244577999999998875556566666544
No 56
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=1.4e-15 Score=119.18 Aligned_cols=119 Identities=17% Similarity=0.111 Sum_probs=76.9
Q ss_pred eeEEEEEEEeccCCccccccccCCceEEEEEEeCCC-----CCeec-CCcccCCCCCHHHHHHHHHHHHhCceeeecC-C
Q 027463 22 RLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVF-PKGGWEDDETVSEAACREALEEAGVRGLLDE-N 94 (223)
Q Consensus 22 r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~-----~~W~l-PGG~vE~gEs~~eAA~REl~EEtGl~~~~~~-~ 94 (223)
.+++.|++++..+ +..+|||.+|... |.|.+ |||++++|||+.+||+||++||||+.+.... .
T Consensus 2 h~~v~~~v~~~~~----------~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~ 71 (144)
T cd04692 2 HRTFHCWIITKDE----------GKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLI 71 (144)
T ss_pred ceEEEEEEEEccC----------CCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeE
Confidence 3566677777653 3468888888643 46998 5999999999999999999999999864321 1
Q ss_pred CeeEEEeeccCCCccCCCCCCceEEEEEEEEeccc-cc-CCCCcCcceeEEEeHHHHhhccC
Q 027463 95 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEE-LE-SWPEQANYKRIWLSVEEAFKSCR 154 (223)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~-~~-~~~~~e~~~~~W~~~~e~~~~l~ 154 (223)
.++.+.+....... .......++|.+..... .. ....+|..+++|++++++.+++.
T Consensus 72 ~~~~~~~~~~~~~~----~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~ 129 (144)
T cd04692 72 PLGTFKIEYDHIGK----LIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELLE 129 (144)
T ss_pred EeeEEEEeccccCC----CccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHHH
Confidence 45555543321100 01112345666655431 11 12334667899999999988763
No 57
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.66 E-value=1.2e-15 Score=130.63 Aligned_cols=101 Identities=15% Similarity=0.099 Sum_probs=72.4
Q ss_pred eEEEEEEeCCC--CCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEEEEE
Q 027463 47 VLVLMISTPNR--DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFAL 124 (223)
Q Consensus 47 ~~VLLv~r~~~--~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 124 (223)
.+|||++++.. +.|++|||++|+|||+++||+||++||||+++... .+++.+.+..+. ..++.|.+
T Consensus 143 ~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~-~~~~s~~~~~p~-----------~lm~~f~a 210 (256)
T PRK00241 143 DEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNL-RYVGSQPWPFPH-----------SLMLGFHA 210 (256)
T ss_pred CEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeee-EEEEeEeecCCC-----------eEEEEEEE
Confidence 38999988643 56999999999999999999999999999997655 356655443211 24566767
Q ss_pred EecccccCCCCcCcceeEEEeHHHHhhccCChHHH
Q 027463 125 EVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMI 159 (223)
Q Consensus 125 ~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~~~ 159 (223)
.+.........+|..+++|++++++..+.....+.
T Consensus 211 ~~~~~~~~~~~~Ei~~a~W~~~del~~lp~~~sia 245 (256)
T PRK00241 211 DYDSGEIVFDPKEIADAQWFRYDELPLLPPSGTIA 245 (256)
T ss_pred EecCCcccCCcccEEEEEEECHHHCcccCCchHHH
Confidence 66532222223466788999999998876654443
No 58
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.64 E-value=4.2e-15 Score=121.43 Aligned_cols=105 Identities=22% Similarity=0.104 Sum_probs=72.0
Q ss_pred eEEEEEEeCCC----CCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEEE
Q 027463 47 VLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122 (223)
Q Consensus 47 ~~VLLv~r~~~----~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 122 (223)
.+|||+++... ..|+||||.+|+||++++||+||++||||+.+... ..++.+.... +.. ...+++|
T Consensus 59 ~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l-~~l~~~~~~~-~~~--------~~~~~~f 128 (185)
T PRK11762 59 DTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQL-TFLKELSLAP-SYF--------SSKMNIV 128 (185)
T ss_pred CEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcce-EEEEEEecCC-Ccc--------CcEEEEE
Confidence 37999998543 34999999999999999999999999999997766 3666654322 211 1245566
Q ss_pred EEEeccc-ccCCCCcCcceeEEEeHHHHhhccCChHHHHH
Q 027463 123 ALEVTEE-LESWPEQANYKRIWLSVEEAFKSCRYDWMIDA 161 (223)
Q Consensus 123 ~~~v~~~-~~~~~~~e~~~~~W~~~~e~~~~l~~~~~~~~ 161 (223)
.+..... .....+.|..+..|++++++.+++....+..+
T Consensus 129 ~a~~~~~~~~~~~e~E~i~~~~~~~~e~~~~~~~g~i~d~ 168 (185)
T PRK11762 129 LAEDLYPERLEGDEPEPLEVVRWPLADLDELLARPDFSEA 168 (185)
T ss_pred EEEccccccCCCCCCceeEEEEEcHHHHHHHHHcCCCCcH
Confidence 5543221 11112334567899999999988766555433
No 59
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.64 E-value=8.3e-15 Score=110.08 Aligned_cols=106 Identities=20% Similarity=0.135 Sum_probs=75.4
Q ss_pred eEEEEEEeCCC----CCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEEE
Q 027463 47 VLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122 (223)
Q Consensus 47 ~~VLLv~r~~~----~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 122 (223)
+++||++|++. +.|.||||+++.+|++.+||.||+.||||+..... ..++.+.+..+.. ....++|
T Consensus 13 ~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~-~~~~~~~~~~~~~---------~~~~~~~ 82 (124)
T cd03425 13 GRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVG-ELLATVEHDYPDK---------RVTLHVF 82 (124)
T ss_pred CEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEecc-ceEEEEEeeCCCC---------eEEEEEE
Confidence 37999988643 46999999999999999999999999999997654 3566665544322 2345666
Q ss_pred EEEecccccCCCCcCcceeEEEeHHHHhhccCChHHHHHHHH
Q 027463 123 ALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDALKK 164 (223)
Q Consensus 123 ~~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~~~~~l~~ 164 (223)
.+....... ...+....+|++++++......+.++.+++.
T Consensus 83 ~~~~~~~~~--~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~ 122 (124)
T cd03425 83 LVELWSGEP--QLLEHQELRWVPPEELDDLDFPPADVPIVAA 122 (124)
T ss_pred EEeeeCCCc--ccccCceEEEeeHHHcccCCCCcccHHHHHh
Confidence 665433211 1234567899999999887666666665543
No 60
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=5.2e-15 Score=112.62 Aligned_cols=97 Identities=20% Similarity=0.138 Sum_probs=63.1
Q ss_pred EEEEEEeCC-----CCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEEE
Q 027463 48 LVLMISTPN-----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122 (223)
Q Consensus 48 ~VLLv~r~~-----~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 122 (223)
+|||++|.. .+.|.+|||+++.|||+.+||+||++||||+.+.... .++...+..... . .....++|
T Consensus 14 ~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~-~~~~~~~~~~~~-~------~~~~~~~~ 85 (129)
T cd04699 14 RILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFL-RYPSTVTHEDSG-V------YNVIYLVF 85 (129)
T ss_pred cEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeee-eeeEEEEEcCCC-E------EEEEEEEE
Confidence 799998864 3469999999999999999999999999999976653 333222221110 0 11233445
Q ss_pred EEEecccccCCCCcCcceeEEEeHHHHhhcc
Q 027463 123 ALEVTEELESWPEQANYKRIWLSVEEAFKSC 153 (223)
Q Consensus 123 ~~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l 153 (223)
.+....... ...++..+++|++++++..+.
T Consensus 86 ~~~~~~~~~-~~~~e~~~~~w~~~~el~~~~ 115 (129)
T cd04699 86 VCEALSGAV-KLSDEHEEYAWVTLEELAILK 115 (129)
T ss_pred EeeecCCcc-cCChhheEEEEecHHHhhhhh
Confidence 543332211 123355678999999985443
No 61
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.63 E-value=3.3e-15 Score=113.71 Aligned_cols=91 Identities=21% Similarity=0.191 Sum_probs=68.4
Q ss_pred EEEEEEeCCCCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEEEEEEec
Q 027463 48 LVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVT 127 (223)
Q Consensus 48 ~VLLv~r~~~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~ 127 (223)
++||++++ .+.|.+|||+++.||++.+||+||++||||+.+... .+++.+.+..... .....+|.+.+.
T Consensus 12 ~vLl~~~~-~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~-~~l~~~~~~~~~~---------~~~~~~y~a~~~ 80 (118)
T cd04665 12 GLLLVRHK-DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSL-TLVGYYQVDLFES---------GFETLVYPAVSA 80 (118)
T ss_pred EEEEEEeC-CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCce-EEEEEEEecCCCC---------cEEEEEEEEEEE
Confidence 79999887 457999999999999999999999999999997555 3677776544221 234567777666
Q ss_pred ccccCCCCcCcceeEEEeHHHH
Q 027463 128 EELESWPEQANYKRIWLSVEEA 149 (223)
Q Consensus 128 ~~~~~~~~~e~~~~~W~~~~e~ 149 (223)
......+..|.....|++.+..
T Consensus 81 ~~~~~~~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 81 QLEEKASYLETDGPVLFKNEPE 102 (118)
T ss_pred ecccccccccccCcEEeccCCc
Confidence 5433335667778899997655
No 62
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.63 E-value=5.6e-15 Score=120.61 Aligned_cols=118 Identities=18% Similarity=0.190 Sum_probs=76.1
Q ss_pred CceeEEEEEEEeccCCccccccccCCceEEEEEEeCCC-----CCeecC-CcccCCCCCHHHHHHHHHHHHhCceeeecC
Q 027463 20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVFP-KGGWEDDETVSEAACREALEEAGVRGLLDE 93 (223)
Q Consensus 20 ~~r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~-----~~W~lP-GG~vE~gEs~~eAA~REl~EEtGl~~~~~~ 93 (223)
..+.++++++++.+ ++|||++|... +.|.+| ||++++|||+++||+||+.||||+++....
T Consensus 32 ~~h~av~v~i~~~~-------------g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~ 98 (184)
T PRK03759 32 PLHLAFSCYLFDAD-------------GRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLE 98 (184)
T ss_pred CeeeEEEEEEEcCC-------------CeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccc
Confidence 44666677677643 37999987432 345554 799999999999999999999999875332
Q ss_pred CCeeEEEeeccCCCccCCCCCCceEEEEEEEEecccccCCCCcCcceeEEEeHHHHhhccCC
Q 027463 94 NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRY 155 (223)
Q Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~ 155 (223)
..++.+.|...... +.......++|.+........ ..+|..+++|++++++.+++..
T Consensus 99 ~~~~~~~~~~~~~~----~~~~~~~~~vf~~~~~~~~~~-~~~Ev~~~~W~~~~el~~~i~~ 155 (184)
T PRK03759 99 LVLPDFRYRATDPN----GIVENEVCPVFAARVTSALQP-NPDEVMDYQWVDPADLLRAVDA 155 (184)
T ss_pred cccceEEEEEecCC----CceeeEEEEEEEEEECCCCCC-ChhHeeeEEEECHHHHHHHHHh
Confidence 34555554322111 111122456777766543221 2345678899999999887643
No 63
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.63 E-value=2.3e-17 Score=141.34 Aligned_cols=128 Identities=15% Similarity=0.072 Sum_probs=81.2
Q ss_pred EEEEEEeCCC--CCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEE--EE
Q 027463 48 LVLMISTPNR--DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYM--FA 123 (223)
Q Consensus 48 ~VLLv~r~~~--~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--f~ 123 (223)
+.||.++++. +.|.+++|++|+|||++|||+||++||||++++... +.....++. ..+.-.+ +.
T Consensus 201 ~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~-~~asQPWP~-----------~p~SLMIgc~a 268 (345)
T KOG3084|consen 201 HALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVIS-YVASQPWPL-----------MPQSLMIGCLA 268 (345)
T ss_pred EeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEe-eeecCCCCC-----------CchHHHHHHHH
Confidence 6677665443 569999999999999999999999999999987552 222222220 1111111 11
Q ss_pred -EEecccccCCCCcCcceeEEEeHHHHhhccCChHHHHHHHHHHHHhhhcCcccccccCCCCchhhhhhhcCCCCCCccc
Q 027463 124 -LEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDALKKFLLGMNTERTQLCKSADSEDSTAKEHQMYSPSPGCSVK 202 (223)
Q Consensus 124 -~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (223)
+..+.......+.|..+++||+.+++.+.+.. ++.. .+.++ .++|++ |
T Consensus 269 la~~~~~I~vd~dlEleDaqwF~r~ev~~aL~~---------------kg~~------Rv~~~---~a~i~~-------P 317 (345)
T KOG3084|consen 269 LAKLNGKISVDKDLELEDAQWFDREEVKSALTT---------------KGLV------RVQIE---KALILI-------P 317 (345)
T ss_pred HHhhCCccccCcchhhhhcccccHHHHHHHHHh---------------cCCc------ccccc---Ccceec-------C
Confidence 12222233324446678999999998765542 1110 01111 167888 7
Q ss_pred CCCceeeccCCCCCCC
Q 027463 203 KPSGVHHQLEKSCTND 218 (223)
Q Consensus 203 ~~~~~~~~~~~~~~~~ 218 (223)
.|++|+|+||.-|.+.
T Consensus 318 ~~~aIA~qLI~~~~~~ 333 (345)
T KOG3084|consen 318 PPFAIAHQLILHWVGF 333 (345)
T ss_pred ChhHHHHHHHHHHHcc
Confidence 7779999999999764
No 64
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=6.3e-15 Score=115.79 Aligned_cols=109 Identities=20% Similarity=0.162 Sum_probs=67.5
Q ss_pred eEEEEEEeCC-----CCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecC---CCeeEEEeeccCCCccCCCC-CCce
Q 027463 47 VLVLMISTPN-----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE---NPLGEWEFRSKSRMNSCNSK-EGGC 117 (223)
Q Consensus 47 ~~VLLv~r~~-----~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~---~~l~~~~~~~~~~~~~~~~~-~~~~ 117 (223)
.+|||++|.. .+.|.+|||++++||++.+||+||+.||+|+.+.... .+++.+.+..+...... .. ....
T Consensus 13 ~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~ 91 (143)
T cd04694 13 QKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLLSRG-LPKRHHI 91 (143)
T ss_pred CEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeeccccccccCCC-cccceeE
Confidence 3899999864 2469999999999999999999999999999876431 25555533222110000 00 1122
Q ss_pred EEEEEEEEeccc----ccCCC-CcCcceeEEEeHHHHhhccCCh
Q 027463 118 RGYMFALEVTEE----LESWP-EQANYKRIWLSVEEAFKSCRYD 156 (223)
Q Consensus 118 ~~~~f~~~v~~~----~~~~~-~~e~~~~~W~~~~e~~~~l~~~ 156 (223)
..++|....... ....+ .+|..+++|++++++..++.+.
T Consensus 92 ~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~~~~ 135 (143)
T cd04694 92 VVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVVSAE 135 (143)
T ss_pred EEEEEEEeccccccccccccCChhhccceEeeCHHHHHHHHHhh
Confidence 233333222111 11112 2466788999999999887653
No 65
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.62 E-value=1.2e-14 Score=110.72 Aligned_cols=104 Identities=16% Similarity=0.031 Sum_probs=71.9
Q ss_pred EEEEEEeCCC----CCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEEEE
Q 027463 48 LVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFA 123 (223)
Q Consensus 48 ~VLLv~r~~~----~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~ 123 (223)
+|||.+|... +.|.||||+++.||++.+|++||+.||||+.+.... .++.+.+..... ....++|.
T Consensus 17 ~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~-~~~~~~h~~~~~---------~~~~~~~~ 86 (128)
T TIGR00586 17 EIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSE-FEKLEYEFYPRH---------ITLWFWLL 86 (128)
T ss_pred EEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeee-EEEEEEEECCCc---------EEEEEEEE
Confidence 7999888654 469999999999999999999999999999876552 455554433221 23456666
Q ss_pred EEecccccCCCCcCcceeEEEeHHHHhhccCChHHHHHHH
Q 027463 124 LEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDALK 163 (223)
Q Consensus 124 ~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~~~~~l~ 163 (223)
+...+... ...+.....|++++++.+......++++++
T Consensus 87 ~~~~~~~~--~~~~~~~~~W~~~~~l~~~~~p~~~~~~~~ 124 (128)
T TIGR00586 87 ERWEGGPP--GKEGQPEEWWVLVGLLADDFFPAANPVIIK 124 (128)
T ss_pred EEEcCCCc--CcccccccEEeCHHHCCccCCCCCCHHHHH
Confidence 55543211 122345679999999988765555555554
No 66
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.62 E-value=4.8e-15 Score=110.44 Aligned_cols=99 Identities=24% Similarity=0.300 Sum_probs=71.1
Q ss_pred EEEEEEeCC--CCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEEEEEE
Q 027463 48 LVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALE 125 (223)
Q Consensus 48 ~VLLv~r~~--~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 125 (223)
+|||+++.. .+.|.+|||+++.||++.+||+||++||+|+..... ..++.+.+...... .....++|.+.
T Consensus 13 ~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~ 84 (123)
T cd02883 13 RVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVL-RLLGVYEVESPDEG-------EHAVVFVFLAR 84 (123)
T ss_pred CEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceee-eEEEEEEeeccCCC-------ceEEEEEEEEE
Confidence 799999887 578999999999999999999999999999987543 35556555433211 12456777777
Q ss_pred ecccccC-CCCcCcceeEEEeHHHHhhccC
Q 027463 126 VTEELES-WPEQANYKRIWLSVEEAFKSCR 154 (223)
Q Consensus 126 v~~~~~~-~~~~e~~~~~W~~~~e~~~~l~ 154 (223)
+...... ....+....+|++++++.+...
T Consensus 85 ~~~~~~~~~~~~e~~~~~w~~~~~l~~~~~ 114 (123)
T cd02883 85 LVGGEPTLLPPDEISEVRWVTLDELPALAL 114 (123)
T ss_pred eCCCCcCCCCCCccceEEEEcHHHCccccc
Confidence 6543221 2233556789999999987443
No 67
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.60 E-value=7.3e-15 Score=120.15 Aligned_cols=116 Identities=21% Similarity=0.149 Sum_probs=80.0
Q ss_pred EEEEEEEeccCCccccccccCCceEEEEEEeCCC---------CCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCC
Q 027463 24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR---------DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDEN 94 (223)
Q Consensus 24 ~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~---------~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~ 94 (223)
+|++|++..+ ..+|||+++.+. ..|.+|||++|.||++++||+||++||||+.+....
T Consensus 46 ~v~vl~~~~~------------~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~- 112 (185)
T TIGR00052 46 AAAVLLYDPK------------KDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLR- 112 (185)
T ss_pred eEEEEEEECC------------CCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceE-
Confidence 4566667543 248999988532 248999999999999999999999999999976442
Q ss_pred CeeEEEeeccCCCccCCCCCCceEEEEEEEEecccc----cCCCCcCcceeEEEeHHHHhhccCChHHHHH
Q 027463 95 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEEL----ESWPEQANYKRIWLSVEEAFKSCRYDWMIDA 161 (223)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~----~~~~~~e~~~~~W~~~~e~~~~l~~~~~~~~ 161 (223)
.++.+. ..++.. ....++|.+.+.... ....++|.....|++++++.+++....+.++
T Consensus 113 ~~~~~~-~~~g~~--------~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G~i~d~ 174 (185)
T TIGR00052 113 KLLSFY-SSPGGV--------TELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEGKIDNG 174 (185)
T ss_pred EEEEEE-cCCCCC--------cEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcCCCCCH
Confidence 444442 222221 246778888765421 1112345567899999999999876655544
No 68
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.60 E-value=1.7e-14 Score=119.49 Aligned_cols=116 Identities=23% Similarity=0.206 Sum_probs=79.2
Q ss_pred EEEEEEEeccCCccccccccCCceEEEEEEeCCCC---------CeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCC
Q 027463 24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRD---------DLVFPKGGWEDDETVSEAACREALEEAGVRGLLDEN 94 (223)
Q Consensus 24 ~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~~---------~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~ 94 (223)
+|++|++..+ ..+|||+++...+ .|++|+|++|+||++.+||+||+.||||+.+....
T Consensus 51 ~V~il~~~~~------------~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~- 117 (202)
T PRK10729 51 AAVLLPFDPV------------RDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTK- 117 (202)
T ss_pred eEEEEEEECC------------CCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEE-
Confidence 5667777643 2389999885442 38999999999999999999999999999976542
Q ss_pred CeeEEEeeccCCCccCCCCCCceEEEEEEEEeccc--c---cCCCCcCcceeEEEeHHHHhhccCChHHHHH
Q 027463 95 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEE--L---ESWPEQANYKRIWLSVEEAFKSCRYDWMIDA 161 (223)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~--~---~~~~~~e~~~~~W~~~~e~~~~l~~~~~~~~ 161 (223)
.++.+ |..++.. ....++|.+..... . ....+.|..++.|++++++.+++....+.++
T Consensus 118 ~l~~~-~~spg~~--------~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G~i~d~ 180 (202)
T PRK10729 118 PVLSY-LASPGGT--------SERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDNA 180 (202)
T ss_pred EEEEE-EcCCCcC--------ceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcCCCCcH
Confidence 45444 2222222 23567887775221 1 1112345567899999999988766555443
No 69
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.59 E-value=2.2e-14 Score=111.35 Aligned_cols=108 Identities=22% Similarity=0.267 Sum_probs=72.4
Q ss_pred EEEEEEEeccCCccccccccCCceEEEEEEeCCC-----CCeecCCcccCCCCCHHHHHHHHHHHHhCcee-eecCCCee
Q 027463 24 VAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVFPKGGWEDDETVSEAACREALEEAGVRG-LLDENPLG 97 (223)
Q Consensus 24 ~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~-----~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~-~~~~~~l~ 97 (223)
++++++++.++ +|||+++.+. +.|.+|||+++.||++.+||.||+.||||+.+ .+.. .+.
T Consensus 2 ~~~~~i~~~~g-------------~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~-~~~ 67 (133)
T cd04685 2 AARVVLLDPDD-------------RVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGP-PVW 67 (133)
T ss_pred eEEEEEEcCCC-------------eEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccc-eEE
Confidence 46778887643 7999887542 35999999999999999999999999999987 4442 333
Q ss_pred EEE--eeccCCCccCCCCCCceEEEEEEEEeccc-cc--CCCCc---CcceeEEEeHHHHhhc
Q 027463 98 EWE--FRSKSRMNSCNSKEGGCRGYMFALEVTEE-LE--SWPEQ---ANYKRIWLSVEEAFKS 152 (223)
Q Consensus 98 ~~~--~~~~~~~~~~~~~~~~~~~~~f~~~v~~~-~~--~~~~~---e~~~~~W~~~~e~~~~ 152 (223)
... |...... .....++|.+..... .. ..... +...++|++++++.+.
T Consensus 68 ~~~~~f~~~~~~-------~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 68 RRDAAFTFLGVD-------GRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred EEEEEEEecCcc-------ceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 222 3222111 123467888876541 11 11111 2346899999999875
No 70
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.58 E-value=5.9e-14 Score=114.56 Aligned_cols=143 Identities=15% Similarity=0.083 Sum_probs=81.6
Q ss_pred CceeEEEEEEEeccCCc--cccccc--cCCceEEEEEEeCCCCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecC--
Q 027463 20 QLRLVAGCIPYKFEKND--ENKNCK--MEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE-- 93 (223)
Q Consensus 20 ~~r~~~g~I~~~~~~~~--~~~~~~--~~~~~~VLLv~r~~~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~-- 93 (223)
++..++-+|+-+...+. +..... .++.++|||++++..+.|.||||++++||++.+||.||+.||||+.+....
T Consensus 18 g~n~~~~~~vtr~~~~~~~~~~i~~~~~~~~l~vLl~~r~~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l~~~~~~ 97 (186)
T cd03670 18 GPNHAADPIVTRWKRDSSGDGSIHPKSGKPILQFVAIKRPDSGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKSDEE 97 (186)
T ss_pred CCchhcCEEEEEEEEcCCCCEEEEecCCCCeeEEEEEEeCCCCcCcCCeeeccCCCCHHHHHHHHHHHHHcccccccchh
Confidence 55555656555543321 111111 124689999999988899999999999999999999999999976532110
Q ss_pred -------------CCeeEEEeeccCCCccCCCCCCc--eEEEEEEEEecc---cccCCCCcCcceeEEEeHHHHhhccCC
Q 027463 94 -------------NPLGEWEFRSKSRMNSCNSKEGG--CRGYMFALEVTE---ELESWPEQANYKRIWLSVEEAFKSCRY 155 (223)
Q Consensus 94 -------------~~l~~~~~~~~~~~~~~~~~~~~--~~~~~f~~~v~~---~~~~~~~~e~~~~~W~~~~e~~~~l~~ 155 (223)
..+.+|.....+... ++... ...++|...... .......++..+++|+++++++.+.
T Consensus 98 ~~~l~~l~~~~~~~~~~vy~~~~~dpr~---td~~w~~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~~l~~L~-- 172 (186)
T cd03670 98 KEEIKKLVELFSKDGVEVYKGYVDDPRN---TDNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKLPLY-- 172 (186)
T ss_pred hhhhcchhhhhcccccEEEeccccCCCC---CCcceEEEEEEEEEecCcccccccccCCCCchheeEEEEcccccccc--
Confidence 012233211111111 12222 233444332111 1222233456788999999988533
Q ss_pred hHHHHHHHHHHH
Q 027463 156 DWMIDALKKFLL 167 (223)
Q Consensus 156 ~~~~~~l~~~~~ 167 (223)
.++..++..+.+
T Consensus 173 ~dH~~Il~~a~~ 184 (186)
T cd03670 173 ANHSQFLKKVAE 184 (186)
T ss_pred cCHHHHHHHHHH
Confidence 345667766654
No 71
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.57 E-value=3.1e-14 Score=113.53 Aligned_cols=115 Identities=17% Similarity=0.064 Sum_probs=74.9
Q ss_pred CceeEEEEEEEeccCCccccccccCCceEEEEEEeCCC-----CCeecC-CcccCCCCCHHHHHHHHHHHHhCceeeecC
Q 027463 20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVFP-KGGWEDDETVSEAACREALEEAGVRGLLDE 93 (223)
Q Consensus 20 ~~r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~-----~~W~lP-GG~vE~gEs~~eAA~REl~EEtGl~~~~~~ 93 (223)
-.+.++++++++.+ ++|||.+|... +.|.+| ||+++.|| .+||+||++||||+.+...+
T Consensus 25 ~~h~~v~v~v~~~~-------------g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~ 89 (158)
T TIGR02150 25 PLHRAFSVFLFNEE-------------GQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVP 89 (158)
T ss_pred CeEEEEEEEEEcCC-------------CeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccc
Confidence 34555566666543 37999887542 668886 79999999 49999999999999876542
Q ss_pred -CCeeEEEeeccCCCccCCCCCCceEEEEEEEEecccccCCCCcCcceeEEEeHHHHhhccCCh
Q 027463 94 -NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYD 156 (223)
Q Consensus 94 -~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~ 156 (223)
..++.+.|...... + .....++|.+....... ...+|..+++|++++++.+++..+
T Consensus 90 l~~~~~~~~~~~~~~----g--~~~~~~~f~~~~~~~~~-~~~~Ev~~~~W~~~~el~~~~~~~ 146 (158)
T TIGR02150 90 LTVLPRFSYRARDAW----G--EHELCPVFFARAPVPLN-PNPEEVAEYRWVSLEELKEILKAP 146 (158)
T ss_pred eEEcceEEEEEecCC----C--cEEEEEEEEEecCCccc-CChhHeeeEEEeCHHHHHHHHhcC
Confidence 13344444332211 1 12345677666554222 123366789999999999887654
No 72
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.52 E-value=2.2e-13 Score=108.30 Aligned_cols=94 Identities=26% Similarity=0.261 Sum_probs=68.9
Q ss_pred EEEEEEeCCCCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEEEEEEec
Q 027463 48 LVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVT 127 (223)
Q Consensus 48 ~VLLv~r~~~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~ 127 (223)
++||+++... .|.+|||++|+|||+.+||+||++||||+.+... .+++.+...... . ....++|.+.+.
T Consensus 36 ~~LL~~~~~~-~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~-~~lg~~~~~~~~-~--------~~~~~vf~A~~~ 104 (156)
T TIGR02705 36 QWLLTEHKRR-GLEFPGGKVEPGETSKEAAIREVMEETGAIVKEL-HYIGQYEVEGES-T--------DFVKDVYFAEVS 104 (156)
T ss_pred EEEEEEEcCC-cEECCceecCCCCCHHHHHHHHHHHHhCcEeeee-EEEEEEEecCCC-c--------EEEEEEEEEEEe
Confidence 6899988654 5999999999999999999999999999998766 377776543321 1 235677777766
Q ss_pred ccccCCCCcCcceeE-EEeHHHHhhccCC
Q 027463 128 EELESWPEQANYKRI-WLSVEEAFKSCRY 155 (223)
Q Consensus 128 ~~~~~~~~~e~~~~~-W~~~~e~~~~l~~ 155 (223)
.. . +.++..+.. +++++++.+++..
T Consensus 105 ~~-~--~~~e~~E~~~~~~~~~~~~~~~~ 130 (156)
T TIGR02705 105 AL-E--SKDDYLETKGPVLLQEIPDIIKA 130 (156)
T ss_pred cc-c--cCCCceeeEeEEEHHHHHHHHhc
Confidence 32 2 224445665 8999999877644
No 73
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.52 E-value=2.3e-13 Score=111.74 Aligned_cols=113 Identities=19% Similarity=0.153 Sum_probs=73.2
Q ss_pred ceeEEEEEEEeccCCccccccccCCceEEEEEEeCC-----CCCeecCCcccCC-CCCHHHHHHHHHHHHhCceeeecCC
Q 027463 21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFPKGGWED-DETVSEAACREALEEAGVRGLLDEN 94 (223)
Q Consensus 21 ~r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~-----~~~W~lPGG~vE~-gEs~~eAA~REl~EEtGl~~~~~~~ 94 (223)
.+.++++|++..++ ...|||++|.. .|.|+||||++|+ +|++++||+||++||||+..... .
T Consensus 29 ~~~aavvl~l~~~~-----------~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~-~ 96 (190)
T PRK10707 29 QRQAAVLIPIVRRP-----------QPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAV-E 96 (190)
T ss_pred CCCeEEEEEEEECC-----------CCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccce-E
Confidence 45567777776432 34788888542 2569999999997 47899999999999999997655 3
Q ss_pred CeeEEEeeccCCCccCCCCCCceEEEEEEEEecccccCCCC-cCcceeEEEeHHHHhhccC
Q 027463 95 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPE-QANYKRIWLSVEEAFKSCR 154 (223)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~-~e~~~~~W~~~~e~~~~l~ 154 (223)
.++.+....... + ..+..|.+.+.......++ +|..++.|++++++.++..
T Consensus 97 ~lg~l~~~~~~~-~--------~~~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~~~ 148 (190)
T PRK10707 97 VIGVLPPVDSST-G--------YQVTPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHLGR 148 (190)
T ss_pred EEEEeeeeeccC-C--------cEEEEEEEEECCCCCCCCChhhhheEEEEeHHHHhCccc
Confidence 666654211111 1 1233343333332232233 3566789999999987654
No 74
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.51 E-value=3.1e-13 Score=111.07 Aligned_cols=116 Identities=18% Similarity=0.103 Sum_probs=78.9
Q ss_pred eEEEEEEEeccCCccccccccCCceEEEEEEeCCCC----------CeecCCcccCCCCCHHHHHHHHHHHHhCceeeec
Q 027463 23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRD----------DLVFPKGGWEDDETVSEAACREALEEAGVRGLLD 92 (223)
Q Consensus 23 ~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~~----------~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~ 92 (223)
-+|++|++..++ .+|||+++.+.+ .|++|+|.+|+| ++++||+||+.||||+.+...
T Consensus 46 ~~v~Vl~~~~~~------------~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~ 112 (191)
T PRK15009 46 NGATILLYNAKK------------KTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEV 112 (191)
T ss_pred CEEEEEEEECCC------------CEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceE
Confidence 356677776432 389999986543 289999999976 699999999999999987544
Q ss_pred CCCeeEEEeeccCCCccCCCCCCceEEEEEEEEeccc--cc--CCCCcCcceeEEEeHHHHhhccCChHHHHH
Q 027463 93 ENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEE--LE--SWPEQANYKRIWLSVEEAFKSCRYDWMIDA 161 (223)
Q Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~--~~--~~~~~e~~~~~W~~~~e~~~~l~~~~~~~~ 161 (223)
. .++.+ |.+++... ...++|.+..... .. ...++|..++.|++++++.+++....+.++
T Consensus 113 ~-~l~~~-~~spG~s~--------e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G~i~da 175 (191)
T PRK15009 113 R-KLFEL-YMSPGGVT--------ELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDG 175 (191)
T ss_pred E-EeeEE-EcCCcccC--------cEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcCCCCcH
Confidence 2 45544 44444332 3567777765321 11 112345578899999999999866555443
No 75
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.50 E-value=1.7e-13 Score=105.24 Aligned_cols=44 Identities=32% Similarity=0.382 Sum_probs=38.6
Q ss_pred ceEEEEEEeCCCCCeecCCcccCCCCCHHHHHHHHHHHHhCceee
Q 027463 46 KVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGL 90 (223)
Q Consensus 46 ~~~VLLv~r~~~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~ 90 (223)
..+||+.+.+. +.|.||||++++|||+.+||+||++||||+.+.
T Consensus 13 ~~~ll~~r~~~-~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~ 56 (126)
T cd04663 13 VLELLVFEHPL-AGFQIVKGTVEPGETPEAAALRELQEESGLPSF 56 (126)
T ss_pred eEEEEEEEcCC-CcEECCCccCCCCCCHHHHHHHHHHHHHCCeee
Confidence 36777777665 569999999999999999999999999999974
No 76
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.48 E-value=4.4e-13 Score=108.88 Aligned_cols=109 Identities=17% Similarity=0.180 Sum_probs=71.7
Q ss_pred ceEEEEEEeCCC-----CCe-ecCCcccCCCCCHHHHHHHHHHHHhCceeeecC--CCeeEEEeecc-CCCccCCCCCCc
Q 027463 46 KVLVLMISTPNR-----DDL-VFPKGGWEDDETVSEAACREALEEAGVRGLLDE--NPLGEWEFRSK-SRMNSCNSKEGG 116 (223)
Q Consensus 46 ~~~VLLv~r~~~-----~~W-~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~--~~l~~~~~~~~-~~~~~~~~~~~~ 116 (223)
.++|++.+|... |.| .+|||+++.|||+.+||+||++||||+...... ..++.+.|... ... ....
T Consensus 47 ~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~-----~~~~ 121 (180)
T cd03676 47 GLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAG-----GLQP 121 (180)
T ss_pred CeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCC-----cEee
Confidence 367887777543 558 699999999999999999999999999865432 13454444332 111 1112
Q ss_pred eEEEEEEEEecccccCC-CCcCcceeEEEeHHHHhhccCChHHH
Q 027463 117 CRGYMFALEVTEELESW-PEQANYKRIWLSVEEAFKSCRYDWMI 159 (223)
Q Consensus 117 ~~~~~f~~~v~~~~~~~-~~~e~~~~~W~~~~e~~~~l~~~~~~ 159 (223)
...++|.+.++...... .++|..++.|++++++.+++....+.
T Consensus 122 e~~~~f~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~l~~g~~~ 165 (180)
T cd03676 122 EVEYVYDLELPPDFIPAPQDGEVESFRLLTIDEVLRALKEGEFK 165 (180)
T ss_pred eEEEEEEEEcCCCCeeCCCCCcEeEEEEECHHHHHHHHHcCCCC
Confidence 35667766654322211 23456788999999999887654443
No 77
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.47 E-value=9.5e-13 Score=100.15 Aligned_cols=58 Identities=31% Similarity=0.209 Sum_probs=45.4
Q ss_pred CceeEEEEEEEeccCCccccccccCCceEEEEEEeCC---CCCeecCCcccCCCCCHHHHHHHHHHHHhCceeee
Q 027463 20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLL 91 (223)
Q Consensus 20 ~~r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~---~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~ 91 (223)
++..++++|+...+ .+||++|.. .+.|.||||+++.|||+.+||+||+.||||+.+..
T Consensus 2 ~p~~~av~vl~~~~--------------~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~ 62 (118)
T cd04674 2 NPLPVVVALLPVDD--------------GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVDP 62 (118)
T ss_pred CCcEEEEEEEEECC--------------CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccc
Confidence 45566666665533 366676643 35799999999999999999999999999998754
No 78
>PRK08999 hypothetical protein; Provisional
Probab=99.47 E-value=9.6e-13 Score=115.49 Aligned_cols=106 Identities=19% Similarity=0.150 Sum_probs=73.0
Q ss_pred EEEEEEeCCC----CCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEEEE
Q 027463 48 LVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFA 123 (223)
Q Consensus 48 ~VLLv~r~~~----~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~ 123 (223)
+|||++|+.+ +.|.||||+++.||++.+||.||++||||+.+.... .++.+.+..++. ....++|.
T Consensus 18 ~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~-~l~~~~h~~~~~---------~~~i~~y~ 87 (312)
T PRK08999 18 RILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAAR-PLITVRHDYPDK---------RVRLDVRR 87 (312)
T ss_pred eEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecce-eEEEEEEEcCCC---------eEEEEEEE
Confidence 7999988653 569999999999999999999999999999876552 455554433222 12455665
Q ss_pred EEecccccCCCCcCcceeEEEeHHHHhhccCChHHHHHHHHH
Q 027463 124 LEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDALKKF 165 (223)
Q Consensus 124 ~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~~~~~l~~~ 165 (223)
+....... ...+...++|++++++.+....+.++.+++.+
T Consensus 88 ~~~~~~~~--~~~e~~~~~Wv~~~el~~~~~~~~~~~i~~~l 127 (312)
T PRK08999 88 VTAWQGEP--HGREGQPLAWVAPDELAVYPFPPANQPIVRAL 127 (312)
T ss_pred EEEecCcc--cCccCCccEEecHHHcccCCCCcchHHHHHHh
Confidence 54332111 12344577999999999876666666555444
No 79
>PLN02709 nudix hydrolase
Probab=99.40 E-value=2.4e-12 Score=107.53 Aligned_cols=117 Identities=15% Similarity=0.136 Sum_probs=74.0
Q ss_pred CceeEEEEEEEeccCCccccccccCCceEEEEEEeCCC-----CCeecCCcccCCC-CCHHHHHHHHHHHHhCceeeecC
Q 027463 20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVFPKGGWEDD-ETVSEAACREALEEAGVRGLLDE 93 (223)
Q Consensus 20 ~~r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~-----~~W~lPGG~vE~g-Es~~eAA~REl~EEtGl~~~~~~ 93 (223)
..|.+|..|++...... -++..+|||++|... |.|+||||++|++ +++.+||+||++||+|+.....
T Consensus 30 ~~r~AAVLv~l~~~~~~------~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v- 102 (222)
T PLN02709 30 PAKSSAVLVCLYQEQRE------DKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLV- 102 (222)
T ss_pred CCCccEEEEEEeeccCC------CCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchhe-
Confidence 45666666666542100 013568999998653 6799999999996 5799999999999999986544
Q ss_pred CCeeEEEeeccCCCccCCCCCCceEEEEEEEEecc--cccCCC-CcCcceeEEEeHHHHhhc
Q 027463 94 NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTE--ELESWP-EQANYKRIWLSVEEAFKS 152 (223)
Q Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~--~~~~~~-~~e~~~~~W~~~~e~~~~ 152 (223)
..+|........ . ...+.-|.+.+.. .....+ .+|..++.|++++.+.+.
T Consensus 103 ~vlg~L~~~~t~-s--------g~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~~ 155 (222)
T PLN02709 103 TIISVLEPFVNK-K--------GMSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLKD 155 (222)
T ss_pred EEeeecCCeECC-C--------CCEEEEEEEEecCCCCccccCChhhhheeEEecHHHHhCC
Confidence 255554321111 1 1245555555543 222112 346678899999998653
No 80
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.34 E-value=9.9e-13 Score=112.39 Aligned_cols=95 Identities=20% Similarity=0.178 Sum_probs=67.7
Q ss_pred EEEEEEeCCC--CCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEEEEEE
Q 027463 48 LVLMISTPNR--DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALE 125 (223)
Q Consensus 48 ~VLLv~r~~~--~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 125 (223)
++||.++... +.|++.+|+||+|||+++|+.||++||+|+++...+ +++...+..++. .+.-|.++
T Consensus 156 ~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vr-Y~~SQPWPfP~S-----------LMigf~ae 223 (279)
T COG2816 156 EILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVR-YVGSQPWPFPHS-----------LMLGFMAE 223 (279)
T ss_pred ceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeee-EEeccCCCCchh-----------hhhhheee
Confidence 4788776543 669999999999999999999999999999987663 555554443322 34444455
Q ss_pred ecccccCCCCcCcceeEEEeHHHHhhccC
Q 027463 126 VTEELESWPEQANYKRIWLSVEEAFKSCR 154 (223)
Q Consensus 126 v~~~~~~~~~~e~~~~~W~~~~e~~~~l~ 154 (223)
+....-.....|..+++||+.+|+..++.
T Consensus 224 y~sgeI~~d~~Eleda~WFs~~evl~~L~ 252 (279)
T COG2816 224 YDSGEITPDEGELEDARWFSRDEVLPALP 252 (279)
T ss_pred eccccccCCcchhhhccccCHhHHhhhcC
Confidence 44432222335778999999999766654
No 81
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.30 E-value=4.6e-11 Score=90.89 Aligned_cols=105 Identities=24% Similarity=0.255 Sum_probs=64.4
Q ss_pred eEEEEEEeCCCC-CeecCCcccCCCCCHHH-HHHHHHHHHhCceeee--cCCCeeEEEeeccCCCccCCCCCCceEEEEE
Q 027463 47 VLVLMISTPNRD-DLVFPKGGWEDDETVSE-AACREALEEAGVRGLL--DENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122 (223)
Q Consensus 47 ~~VLLv~r~~~~-~W~lPGG~vE~gEs~~e-AA~REl~EEtGl~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 122 (223)
.+||+++++... .|.+|||+++.||++.+ ||+||++||||+.+.. . ..++.+......... ........++
T Consensus 24 ~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~ 98 (161)
T COG0494 24 GEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERL-ELLGEFPPSPGDGSS----VGGREHRVFF 98 (161)
T ss_pred CEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecc-eeeeeccCcccCccc----ccceEEEEEE
Confidence 478999888876 89999999999999988 9999999999999763 2 234444322211110 0001112222
Q ss_pred EEEecc--c--ccCCC--CcCcceeEEEeHHHHhhccCCh
Q 027463 123 ALEVTE--E--LESWP--EQANYKRIWLSVEEAFKSCRYD 156 (223)
Q Consensus 123 ~~~v~~--~--~~~~~--~~e~~~~~W~~~~e~~~~l~~~ 156 (223)
...... . ..... ..+.....|++++++.......
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 138 (161)
T COG0494 99 VAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALVLAE 138 (161)
T ss_pred eeeccccccccccccCCCcchhhceeeeeHHHcccccccc
Confidence 222111 1 11101 1345678999999998775543
No 82
>PLN03143 nudix hydrolase; Provisional
Probab=99.28 E-value=1.3e-10 Score=100.99 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=63.3
Q ss_pred ceEEEEEEeCCC--C--CeecCCcccCC-CCCHHHHHHHHHHHHhCceeeecC-CCeeE--------EEeeccCCCccCC
Q 027463 46 KVLVLMISTPNR--D--DLVFPKGGWED-DETVSEAACREALEEAGVRGLLDE-NPLGE--------WEFRSKSRMNSCN 111 (223)
Q Consensus 46 ~~~VLLv~r~~~--~--~W~lPGG~vE~-gEs~~eAA~REl~EEtGl~~~~~~-~~l~~--------~~~~~~~~~~~~~ 111 (223)
..+|||+++.+. + .|+||||.+|+ +|++.+||+||++||||+.....+ ..+.. -.|...+...
T Consensus 142 e~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG~~d--- 218 (291)
T PLN03143 142 ETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGGCD--- 218 (291)
T ss_pred CEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCCccC---
Confidence 456999988653 2 38999999997 589999999999999999753211 01210 1122222221
Q ss_pred CCCCceEEEEEEEEe--ccc--------ccCC-CCcCcceeEEEeHHHHhhccCCh
Q 027463 112 SKEGGCRGYMFALEV--TEE--------LESW-PEQANYKRIWLSVEEAFKSCRYD 156 (223)
Q Consensus 112 ~~~~~~~~~~f~~~v--~~~--------~~~~-~~~e~~~~~W~~~~e~~~~l~~~ 156 (223)
..+++|.+.. +.. .... .+.|..++.|++++++..+..+.
T Consensus 219 -----E~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD~ 269 (291)
T PLN03143 219 -----EEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTADA 269 (291)
T ss_pred -----CeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHhH
Confidence 1344554432 210 0111 22345678999999999887543
No 83
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.24 E-value=2.8e-10 Score=96.82 Aligned_cols=135 Identities=13% Similarity=0.111 Sum_probs=76.0
Q ss_pred CceeEEEEEEEeccCCccccccccCCceEEEEEEeCCC-----CCeecC-CcccCCCCC-----------------HHHH
Q 027463 20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVFP-KGGWEDDET-----------------VSEA 76 (223)
Q Consensus 20 ~~r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~-----~~W~lP-GG~vE~gEs-----------------~~eA 76 (223)
-.+.++.+++++.+ ++|||.+|... +.|... +|++..||+ ..+|
T Consensus 54 l~Hra~~v~i~n~~-------------g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eA 120 (247)
T PLN02552 54 LLHRAFSVFLFNSK-------------YELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNA 120 (247)
T ss_pred ceEEEEEEEEEcCC-------------CeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHH
Confidence 34566666666543 37888888654 358443 344444321 6899
Q ss_pred HHHHHHHHhCceeeecC----CCeeEEEeeccCCCccC--CCCCCceEEEEEEEE-ecc-cccCCCCcCcceeEEEeHHH
Q 027463 77 ACREALEEAGVRGLLDE----NPLGEWEFRSKSRMNSC--NSKEGGCRGYMFALE-VTE-ELESWPEQANYKRIWLSVEE 148 (223)
Q Consensus 77 A~REl~EEtGl~~~~~~----~~l~~~~~~~~~~~~~~--~~~~~~~~~~~f~~~-v~~-~~~~~~~~e~~~~~W~~~~e 148 (223)
|+||+.|||||.+.... .+++.+.|........+ .+.......++|... ... .... ..+|..+++|+++++
T Consensus 121 A~REL~EElGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~l-q~eEV~~~~wvs~~e 199 (247)
T PLN02552 121 AQRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNP-NPDEVADVKYVNREE 199 (247)
T ss_pred HHhHHHHHhCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccC-CHHHhheEEEEeHHH
Confidence 99999999999854321 24555666543321000 000011222233222 222 2221 234667899999999
Q ss_pred HhhccC-------ChHHHHHHHHHHHH
Q 027463 149 AFKSCR-------YDWMIDALKKFLLG 168 (223)
Q Consensus 149 ~~~~l~-------~~~~~~~l~~~~~~ 168 (223)
+..++. .++++.++..++..
T Consensus 200 l~~~~~~~~~~~~tpw~~~~~~~~l~~ 226 (247)
T PLN02552 200 LKEMMRKESGLKLSPWFRLIVDNFLMK 226 (247)
T ss_pred HHHHHhhcCCcccCHHHHHHHHHHHHH
Confidence 998753 57777777666543
No 84
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=99.19 E-value=2.2e-10 Score=86.62 Aligned_cols=60 Identities=30% Similarity=0.340 Sum_probs=52.3
Q ss_pred ceeEEEEEEEeccCCccccccccCCceEEEEEEe-------CCCCCeecCCcccCCCCCHHHHHHHHHHHHhCceee
Q 027463 21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMIST-------PNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGL 90 (223)
Q Consensus 21 ~r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r-------~~~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~ 90 (223)
+++.+|+++|+... +...|||++. ++.+.|++|+|....||++..||+||.-||+||-+.
T Consensus 2 pK~SAGvLlYR~~a----------G~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vd 68 (161)
T COG4119 2 PKLSAGVLLYRARA----------GVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVD 68 (161)
T ss_pred CcccceeEEEEecC----------CCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeec
Confidence 46789999999876 5788999976 344679999999999999999999999999999874
No 85
>PLN02791 Nudix hydrolase homolog
Probab=99.03 E-value=6.7e-09 Score=100.40 Aligned_cols=105 Identities=15% Similarity=0.041 Sum_probs=64.7
Q ss_pred eEEEEEEeCC-----CCCeec-CCcccCCCCCHHHHHHHHHHHHhCceeeecC-CCeeEEEeeccCCCccCCCCCCceEE
Q 027463 47 VLVLMISTPN-----RDDLVF-PKGGWEDDETVSEAACREALEEAGVRGLLDE-NPLGEWEFRSKSRMNSCNSKEGGCRG 119 (223)
Q Consensus 47 ~~VLLv~r~~-----~~~W~l-PGG~vE~gEs~~eAA~REl~EEtGl~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~ 119 (223)
++|||.+|.. .|.|.+ +|||++.||+..+||+||+.||+||.+.... .+++.+.+....... +.......
T Consensus 45 gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~~~~g---~~~e~E~~ 121 (770)
T PLN02791 45 QELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECVINDG---KFINNEYN 121 (770)
T ss_pred CeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEeeccCC---CcceeeEE
Confidence 3788877754 256988 7999999999999999999999999853321 244544332111111 00111234
Q ss_pred EEEEEEeccc--c-cC-CCCcCcceeEEEeHHHHhhccC
Q 027463 120 YMFALEVTEE--L-ES-WPEQANYKRIWLSVEEAFKSCR 154 (223)
Q Consensus 120 ~~f~~~v~~~--~-~~-~~~~e~~~~~W~~~~e~~~~l~ 154 (223)
++|.+..... . .. ...+|..+++|++++++.+++.
T Consensus 122 ~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~l~ 160 (770)
T PLN02791 122 DVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSALA 160 (770)
T ss_pred EEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHHHh
Confidence 4555432211 1 11 1234667889999999987653
No 86
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=98.93 E-value=1.9e-08 Score=81.58 Aligned_cols=103 Identities=19% Similarity=0.176 Sum_probs=63.2
Q ss_pred CceEEEEEEeCCC--CC--eecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEE
Q 027463 45 KKVLVLMISTPNR--DD--LVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGY 120 (223)
Q Consensus 45 ~~~~VLLv~r~~~--~~--W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 120 (223)
++..|+|+++-+. |+ -++|+|.++.||++..||+||++||||+++.+...-... |..++..+.. ....+.
T Consensus 86 G~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~~s~~~--f~DPGltn~~----~~iv~v 159 (225)
T KOG3041|consen 86 GKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDMVSPTV--FLDPGLTNCN----LCIVVV 159 (225)
T ss_pred CcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccceeeeccccE--EcCCCCCCCc----eEEEEE
Confidence 5789999988553 44 588999999999999999999999999997654222222 3333332211 111122
Q ss_pred EEEEEeccccc--CCCC-cCcceeEEEeHHHHhhcc
Q 027463 121 MFALEVTEELE--SWPE-QANYKRIWLSVEEAFKSC 153 (223)
Q Consensus 121 ~f~~~v~~~~~--~~~~-~e~~~~~W~~~~e~~~~l 153 (223)
-+...+.+... ...+ .|-.++.-++..++.+.+
T Consensus 160 ~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~~ 195 (225)
T KOG3041|consen 160 DIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWREL 195 (225)
T ss_pred EecCCCccccCccccCCCCceEEEEEeeHHHHHHHH
Confidence 22222222221 1122 344677888888886554
No 87
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.85 E-value=1.7e-08 Score=84.04 Aligned_cols=116 Identities=21% Similarity=0.269 Sum_probs=70.3
Q ss_pred CceeEEEEEEEeccCCccccccccCCceEEEEEEeCCC-----CCeecCCcccCC-CCCHHHHHHHHHHHHhCceeeecC
Q 027463 20 QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVFPKGGWED-DETVSEAACREALEEAGVRGLLDE 93 (223)
Q Consensus 20 ~~r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~-----~~W~lPGG~vE~-gEs~~eAA~REl~EEtGl~~~~~~ 93 (223)
..|.++.+|++...++ +..+|||.+|... |.-+||||+.|. ++|-..||+||++||+|+..+..
T Consensus 40 ~~~~~aVlI~L~~~~~---------~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~- 109 (246)
T KOG3069|consen 40 PNRKAAVLIPLVQVGS---------GELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELV- 109 (246)
T ss_pred CCCCccEEEEEEEcCC---------CceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHh-
Confidence 4467777888876643 4688998887543 567999999998 56778899999999999986433
Q ss_pred CCeeEEE-eeccCCCccCCCCCCceEEEEEEEEecccccCCCCcCcceeEEEeHHHHhh
Q 027463 94 NPLGEWE-FRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFK 151 (223)
Q Consensus 94 ~~l~~~~-~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~W~~~~e~~~ 151 (223)
..+|... +...... .......+.+...+.... .....|..++.|+|++++..
T Consensus 110 ~~~g~l~~~~~r~~~-----~v~p~v~~l~~~~~l~~~-~ln~gEv~~~F~VPL~~ll~ 162 (246)
T KOG3069|consen 110 DVLGALPPFVLRSGW-----SVFPVVGFLSDKKILPSL-RLNSGEVESAFWVPLTDLLL 162 (246)
T ss_pred hhhhhccceeeccCc-----ccceeEEEEecccccccc-cCCchheeeeeeeeHHHHhh
Confidence 2344331 1111111 111122222211111111 11234566889999999964
No 88
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.82 E-value=1.8e-07 Score=69.60 Aligned_cols=97 Identities=20% Similarity=0.210 Sum_probs=65.4
Q ss_pred EEEEEEeCCC----CCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEEEE
Q 027463 48 LVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFA 123 (223)
Q Consensus 48 ~VLLv~r~~~----~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~ 123 (223)
++||.+|+.+ |.|+||+|.++.+|+..++..|++.+|.++ .. ..++.+.+..++.. ....+|.
T Consensus 15 ~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~H~fth~~---------~~~~~~~ 81 (118)
T cd03431 15 RVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL---SL-EPLGTVKHTFTHFR---------LTLHVYL 81 (118)
T ss_pred eEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc---cc-ccceeEEEecCCeE---------EEEEEEE
Confidence 7899988765 469999999999999999999999998764 11 23445544433221 2455666
Q ss_pred EEecccccCCCCcCcceeEEEeHHHHhhccCChHHHHHH
Q 027463 124 LEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDAL 162 (223)
Q Consensus 124 ~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~~~~~l 162 (223)
+...... .+..+.+|++++++........++.++
T Consensus 82 ~~~~~~~-----~~~~~~~W~~~eel~~~~~p~~~~kil 115 (118)
T cd03431 82 ARLEGDL-----LAPDEGRWVPLEELDEYALPTVMRKIL 115 (118)
T ss_pred EEEeCCC-----cCccccEEccHHHHhhCCCCHHHHHHH
Confidence 6554321 123467999999998876555555554
No 89
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=98.67 E-value=7.9e-08 Score=76.67 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=81.6
Q ss_pred ceeEEEEEEEeccCCccccccccCCceEEEEEEeCCCCCeecC-------CcccCCCCCHHHHHHHHHHHHhCceee--e
Q 027463 21 LRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFP-------KGGWEDDETVSEAACREALEEAGVRGL--L 91 (223)
Q Consensus 21 ~r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~~~W~lP-------GG~vE~gEs~~eAA~REl~EEtGl~~~--~ 91 (223)
..++.++.+|+.++ ++||.+| ...+-.+| -||.-+|||...||+|-+.+|+||+.. .
T Consensus 32 LHrAFS~~lFne~g-------------~LLltrR-A~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d 97 (185)
T COG1443 32 LHRAFSSFLFNERG-------------QLLLTRR-ALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYD 97 (185)
T ss_pred HHhhhheeEECCCC-------------ceeeehh-hhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccC
Confidence 46788999998765 5555444 43333444 377789999999999999999999965 2
Q ss_pred cCCCeeEEEeeccCCCccCCCCCCceEEEEEEEEecccccCCCCcCcceeEEEeHHHHhhccCCh
Q 027463 92 DENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYD 156 (223)
Q Consensus 92 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~ 156 (223)
...++..|.|...+..+ .....+.++|.+.++..+...| +|..+++|++++++..++.+.
T Consensus 98 ~~~il~rf~YrA~~~~~----~~E~Eic~V~~~~~~~~~~~np-dEV~~~~wv~~e~l~~~~~~~ 157 (185)
T COG1443 98 KLEILPRFRYRAADPDG----IVENEICPVLAARLDSALDPNP-DEVMDYRWVSPEDLKEMVDAT 157 (185)
T ss_pred ccccccceEEeccCCCC----cceeeeeeEEEEeecCCCCCCh-HHhhheeccCHHHHHHhhcCC
Confidence 21366677887665443 3334456777777776544333 466789999999999887653
No 90
>PLN02839 nudix hydrolase
Probab=98.45 E-value=1.3e-06 Score=77.86 Aligned_cols=126 Identities=11% Similarity=0.077 Sum_probs=78.9
Q ss_pred ceEEEEEEeCCC-----CCe-ecCCcccCCCCCHHHHHHHHHHHHhCceeeecC--CCeeEEEeeccCCCccCCCCCCce
Q 027463 46 KVLVLMISTPNR-----DDL-VFPKGGWEDDETVSEAACREALEEAGVRGLLDE--NPLGEWEFRSKSRMNSCNSKEGGC 117 (223)
Q Consensus 46 ~~~VLLv~r~~~-----~~W-~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~ 117 (223)
..++.+-+|... |.| .+.+|++..||++.++++||+.||+||.....+ ...|.+.|........ ...
T Consensus 217 ~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~-----~~e 291 (372)
T PLN02839 217 QKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCF-----KRD 291 (372)
T ss_pred CeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCcc-----ccC
Confidence 456554444321 334 456899999999999999999999999744221 2677777753222211 123
Q ss_pred EEEEEEEEecccccCCCC-cCcceeEEEeHHHHhhccCCh-HHHH-HHHHHHHHhhhcCccc
Q 027463 118 RGYMFALEVTEELESWPE-QANYKRIWLSVEEAFKSCRYD-WMID-ALKKFLLGMNTERTQL 176 (223)
Q Consensus 118 ~~~~f~~~v~~~~~~~~~-~e~~~~~W~~~~e~~~~l~~~-~~~~-~l~~~~~~l~~~~~~~ 176 (223)
..|+|.+++.......+. .|..+..+++++|+.+.+... .++. .-...++.+-.....+
T Consensus 292 vly~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~~l~~~~~fKpn~aLViiDFLiRhG~It 353 (372)
T PLN02839 292 VLFCYDLELPQDFVPKNQDGEVESFKLIPVAQVANVIRKTSFFKANCSLVIIDFLFRHGFIR 353 (372)
T ss_pred EEEEeeeecCCccccCCCccceeEEEEecHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCCC
Confidence 566787777765443343 355678999999998877543 2432 2234445555555555
No 91
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=98.40 E-value=5.2e-07 Score=74.42 Aligned_cols=70 Identities=23% Similarity=0.350 Sum_probs=53.9
Q ss_pred cccccCCceeEEEEEEEeccCCccccccccCCc--eEEEEEEeCCCCCeecCCcccCCCCCHHHHHHHHHHHHh
Q 027463 14 RQRYEDQLRLVAGCIPYKFEKNDENKNCKMEKK--VLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEA 85 (223)
Q Consensus 14 ~~~~~~~~r~~~g~I~~~~~~~~~~~~~~~~~~--~~VLLv~r~~~~~W~lPGG~vE~gEs~~eAA~REl~EEt 85 (223)
+-|+ ++..++.-|+-+...+.++-.+-+.++ ++++.|++++.+.|.+|||.+++||.+-.+.+||+.||+
T Consensus 106 Lgrw--GPNHaadPiVtRwkrd~~gai~~~sgk~ile~vavkr~d~~~WAiPGGmvdpGE~vs~tLkRef~eEa 177 (275)
T KOG4195|consen 106 LGRW--GPNHAADPIVTRWKRDEDGAICRKSGKKILEFVAVKRPDNGEWAIPGGMVDPGEKVSATLKREFGEEA 177 (275)
T ss_pred cccc--CCccccCcceeeeeecCCCCeeecccceeeEEEEEecCCCCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence 3455 666667677777655443333333343 788999999999999999999999999999999999995
No 92
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.38 E-value=1.9e-07 Score=80.64 Aligned_cols=99 Identities=22% Similarity=0.287 Sum_probs=62.1
Q ss_pred eEEEEEEeCC-----CCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEE
Q 027463 47 VLVLMISTPN-----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYM 121 (223)
Q Consensus 47 ~~VLLv~r~~-----~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (223)
.+||+++..+ ++.|-+|+|.++++|++..+|+||++||||++..-.. +..+...+... ....+...|
T Consensus 127 ~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~e----Vla~r~~H~~~----~~~~ksd~f 198 (295)
T KOG0648|consen 127 KEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVE----VLAFRRAHNAT----FGLIKSDMF 198 (295)
T ss_pred ceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhh----HHHHHhhhcch----hhcccccce
Confidence 3799987643 3679999999999999999999999999999754321 11111111100 001123456
Q ss_pred EEEEeccc-cc-CCCCcCcceeEEEeHHHHhhcc
Q 027463 122 FALEVTEE-LE-SWPEQANYKRIWLSVEEAFKSC 153 (223)
Q Consensus 122 f~~~v~~~-~~-~~~~~e~~~~~W~~~~e~~~~l 153 (223)
|.+..... +. .....++..++|+++++.....
T Consensus 199 ~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp 232 (295)
T KOG0648|consen 199 FTCELRPRSLDITKCKREIEAAAWMPIEEYVSQP 232 (295)
T ss_pred eEEEeeccccccchhHHHHHHHhcccHHHhhccc
Confidence 66665431 11 2233355667999999887664
No 93
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=97.92 E-value=7e-05 Score=55.94 Aligned_cols=101 Identities=22% Similarity=0.152 Sum_probs=56.0
Q ss_pred eEEEEEEeCCC----CCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEEE
Q 027463 47 VLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 122 (223)
Q Consensus 47 ~~VLLv~r~~~----~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 122 (223)
+++||.+|+.+ |.|+||.--++. ++..+.+.+.+.+..|+...... .++.+.+..++.. ....+|
T Consensus 9 ~~~Ll~kRp~~gll~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~~-~~~~v~H~fSH~~---------~~~~~~ 77 (114)
T PF14815_consen 9 GRVLLEKRPEKGLLAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSVE-PLGTVKHVFSHRR---------WTIHVY 77 (114)
T ss_dssp SEEEEEE--SSSTTTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE-S--SEEEEEE-SSEE---------EEEEEE
T ss_pred CEEEEEECCCCChhhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhhe-ecCcEEEEccceE---------EEEEEE
Confidence 48999999876 459999977774 33355555666677888876663 7777776664432 356677
Q ss_pred EEEecccccCCCCcCcceeEEEeHHHHhhccCChHHHHHH
Q 027463 123 ALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDAL 162 (223)
Q Consensus 123 ~~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~~~~~l 162 (223)
.+.+...... .....+|++++++.+......+++++
T Consensus 78 ~~~~~~~~~~----~~~~~~W~~~~~l~~~~~p~~~~kil 113 (114)
T PF14815_consen 78 EVEVSADPPA----EPEEGQWVSLEELDQYPLPTPMRKIL 113 (114)
T ss_dssp EEEEE-SS--------TTEEEEEGGGGGGS---HHHHHHH
T ss_pred EEEecCCCCC----CCCCcEEEEHHHHhhCCCCHHHHHHh
Confidence 7776654321 23578999999998866655444443
No 94
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=97.39 E-value=3.3e-05 Score=67.41 Aligned_cols=104 Identities=22% Similarity=0.250 Sum_probs=66.4
Q ss_pred eEEEEEEEeccCCccccccccCCceEEEEEEeCCCCCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEee
Q 027463 23 LVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFR 102 (223)
Q Consensus 23 ~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~ 102 (223)
.+.|++++.... -++||++.-+...|.||.|++..+|+-..||+||+.||||.+..- .+....|.
T Consensus 83 Pv~ga~ild~~~------------sr~llv~g~qa~sw~fprgK~~kdesd~~caiReV~eetgfD~sk---ql~~~e~I 147 (348)
T KOG2937|consen 83 PVRGAIILDEKR------------SRCLLVKGWQASSWSFPRGKISKDESDSDCAIREVTEETGFDYSK---QLQDNEGI 147 (348)
T ss_pred CCchHhhhhhhh------------hhhheeeceecccccccCccccccchhhhcchhcccchhhcCHHH---HhccccCc
Confidence 345677776543 378999887767799999999999999999999999999998531 22222222
Q ss_pred ccCCCccCCCCCCceEEEEEEE-Eeccc--ccCCCCcCcceeEEEeHHHH
Q 027463 103 SKSRMNSCNSKEGGCRGYMFAL-EVTEE--LESWPEQANYKRIWLSVEEA 149 (223)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~f~~-~v~~~--~~~~~~~e~~~~~W~~~~e~ 149 (223)
...-.+ .....|.. .+... .......|.....|+.++++
T Consensus 148 e~nI~d--------q~~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l 189 (348)
T KOG2937|consen 148 ETNIRD--------QLVRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHL 189 (348)
T ss_pred ccchhh--------ceeeeeeeccceeeeecchhhhccccceeeeehhhh
Confidence 211111 12233433 12222 22222346667899999999
No 95
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=97.31 E-value=0.00025 Score=57.78 Aligned_cols=63 Identities=19% Similarity=0.224 Sum_probs=45.9
Q ss_pred cccc-CCceeEEEEEEEeccCCccccccccCCceEEEEEEeCCCCCeecCCcccCCCCCHHHHHHHHHHHHhCce
Q 027463 15 QRYE-DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVR 88 (223)
Q Consensus 15 ~~~~-~~~r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~ 88 (223)
..|. .++|..|.+|++.... +...|||++.. ...|.+|||.+.+||+..++..|.+.+-.|..
T Consensus 35 ~~y~~~GmRrsVe~Vllvh~h----------~~PHvLLLq~~-~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~ 98 (188)
T PF13869_consen 35 ENYEKEGMRRSVEGVLLVHEH----------GHPHVLLLQIG-NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPE 98 (188)
T ss_dssp HHHHHHSSEEEEEEEEEEEET----------TEEEEEEEEET-TTEEE-SEEE--TT--HHHHHHHHHHHHHB-S
T ss_pred HHHHHhCCceEEEEEEEEecC----------CCcEEEEEecc-CccccCCccEeCCCCChhHHHHHHHHHHcCCC
Confidence 3444 4888888777776654 47899999964 44799999999999999999999999999886
No 96
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.85 E-value=0.0027 Score=52.11 Aligned_cols=90 Identities=18% Similarity=0.070 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHhCceeeecC----CCeeEEEeeccCCCccCCCCCCceEEEEEEEEecccccCCCC-cCcceeEEEe
Q 027463 71 ETVSEAACREALEEAGVRGLLDE----NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPE-QANYKRIWLS 145 (223)
Q Consensus 71 Es~~eAA~REl~EEtGl~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~-~e~~~~~W~~ 145 (223)
.-...||+|-+.=|+||..+... ++++.++|..+....+ |........++.. .....|. .|..+++|++
T Consensus 103 lGVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihYkA~sdg~w--GEhEiDYiL~~~~----~~~~nPnpnEv~e~ryvs 176 (225)
T KOG0142|consen 103 LGVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHYKAPSDGIW--GEHEIDYILFLVK----DVTLNPNPNEVSEIRYVS 176 (225)
T ss_pred HHHHHHHHHHHHHhhCCCccccCHHHcccceeeeeecCCCCCc--ccceeeEEEEEec----cCCCCCChhhhhHhheec
Confidence 36889999999999999865332 3778888876655443 2111111222222 2222232 3667889999
Q ss_pred HHHHhhccCC------hHHHHHHHHHH
Q 027463 146 VEEAFKSCRY------DWMIDALKKFL 166 (223)
Q Consensus 146 ~~e~~~~l~~------~~~~~~l~~~~ 166 (223)
.+|+..++.. ||++-+.+.++
T Consensus 177 ~eelkel~~~~~~~~TPWfkli~~~~l 203 (225)
T KOG0142|consen 177 REELKELVAKASAGFTPWFKLISENFL 203 (225)
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHH
Confidence 9999888643 56655544443
No 97
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=96.31 E-value=0.11 Score=41.42 Aligned_cols=98 Identities=18% Similarity=0.080 Sum_probs=58.8
Q ss_pred EEEEEEeCCC-------CCeec-CCcccCCCC---CHHHH----HHHHHHHHhCceeeecC--CCeeEEEeeccCCCccC
Q 027463 48 LVLMISTPNR-------DDLVF-PKGGWEDDE---TVSEA----ACREALEEAGVRGLLDE--NPLGEWEFRSKSRMNSC 110 (223)
Q Consensus 48 ~VLLv~r~~~-------~~W~l-PGG~vE~gE---s~~eA----A~REl~EEtGl~~~~~~--~~l~~~~~~~~~~~~~~ 110 (223)
+||+-.|..+ +.+++ -|||+..++ |..+. +.||+.||.++.-...+ .++|.+.- +...
T Consensus 73 evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINd---d~ne-- 147 (203)
T COG4112 73 EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLIND---DTNE-- 147 (203)
T ss_pred EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecC---CCcc--
Confidence 7888877543 33666 489987653 33332 66999999999843331 15554432 2111
Q ss_pred CCCCCceEEEEEEEEecccccCCCCcCcceeEEEeHHHHhhc
Q 027463 111 NSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKS 152 (223)
Q Consensus 111 ~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~W~~~~e~~~~ 152 (223)
.-..+....|+....-..-...+.+..+.+|+..+++.+.
T Consensus 148 --VgkVHiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~~ 187 (203)
T COG4112 148 --VGKVHIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEKF 187 (203)
T ss_pred --cceEEEEEEEEeeccccceeeeecceeeeeeeeHHHHHHH
Confidence 1123456677766554222223446678899999999873
No 98
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=96.02 E-value=0.023 Score=49.42 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=48.0
Q ss_pred ecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEEEEEEeccccc
Q 027463 61 VFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELE 131 (223)
Q Consensus 61 ~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~ 131 (223)
.+-||.++..-|+.|-|..|+.||+|.++... ..+.+++|...-.... ...+.|.+++.+..+
T Consensus 82 elc~g~idke~s~~eia~eev~eecgy~v~~d-~l~hv~~~~~g~~~s~-------sa~~l~y~ei~es~k 144 (405)
T KOG4432|consen 82 ELCAGLIDKELSPREIASEEVAEECGYRVDPD-DLIHVITFVVGAHQSG-------SAQHLYYAEIDESMK 144 (405)
T ss_pred eeeccccccccCHHHHhHHHHHHHhCCcCChh-HceEEEEEEeccccCc-------cchheeeeecchhhc
Confidence 55699999999999999999999999998877 4788888876443321 234566677776544
No 99
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=95.44 E-value=0.048 Score=46.25 Aligned_cols=104 Identities=19% Similarity=0.186 Sum_probs=65.9
Q ss_pred CceEEEEEEeCCC-CCe-----ecCCcccCCCCCHHHHHHHHHHHHhCceeeecCC--CeeEEEeec-cCCCccCCCCCC
Q 027463 45 KKVLVLMISTPNR-DDL-----VFPKGGWEDDETVSEAACREALEEAGVRGLLDEN--PLGEWEFRS-KSRMNSCNSKEG 115 (223)
Q Consensus 45 ~~~~VLLv~r~~~-~~W-----~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~--~l~~~~~~~-~~~~~~~~~~~~ 115 (223)
+..+|.+-+|... ..| ..-||++.-|-...++|+.|..||+.+...+... ..|..+|-. .+.... .
T Consensus 146 ~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~~~-----~ 220 (306)
T KOG4313|consen 146 GPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQGL-----F 220 (306)
T ss_pred CceEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehhhcc-----C
Confidence 3466766555432 335 4568999999999999999999999998644332 456665542 222211 1
Q ss_pred ceEEEEEEEEecccccCCCCc-CcceeEEEeHHHHhhcc
Q 027463 116 GCRGYMFALEVTEELESWPEQ-ANYKRIWLSVEEAFKSC 153 (223)
Q Consensus 116 ~~~~~~f~~~v~~~~~~~~~~-e~~~~~W~~~~e~~~~l 153 (223)
....|+|.+.+....-..+.+ |......+++.|....+
T Consensus 221 pe~qYVfDL~l~~d~iP~~nDGEV~~F~Lltl~~~v~~l 259 (306)
T KOG4313|consen 221 PETQYVFDLELPLDFIPQNNDGEVQAFELLTLKDCVERL 259 (306)
T ss_pred ccceEEEeccCchhhcCCCCCCceeeEeeecHHHHHHHH
Confidence 235678888777654433433 44456788887776544
No 100
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=95.30 E-value=0.026 Score=45.21 Aligned_cols=57 Identities=18% Similarity=0.199 Sum_probs=44.2
Q ss_pred CCceeEEEEEEEeccCCccccccccCCceEEEEEEeCCCCCeecCCcccCCCCCHHHHHHHHHHHHhC
Q 027463 19 DQLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAG 86 (223)
Q Consensus 19 ~~~r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~~~W~lPGG~vE~gEs~~eAA~REl~EEtG 86 (223)
.++|..+-+|++.... +...|||++- .+..+.+|||.+++||+-.+...|-+-|-+|
T Consensus 66 ~gmRrsvegvlivheH----------~lPHvLLLQi-g~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 66 EGMRRSVEGVLIVHEH----------NLPHVLLLQI-GNTFFKLPGGRLRPGEDEADGLKRLLTESLG 122 (221)
T ss_pred hhhhheeeeeEEEeec----------CCCeEEEEee-CCEEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence 3777777555554433 2568888765 3446899999999999999999999999999
No 101
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=95.11 E-value=0.28 Score=41.78 Aligned_cols=107 Identities=15% Similarity=0.262 Sum_probs=64.3
Q ss_pred ceEEEEEEeCCC--CCeecCCccc-CCCCCHHHHHHHHHHHHhCceee---ecCCCeeEEEeeccCCCccCCCCCCceEE
Q 027463 46 KVLVLMISTPNR--DDLVFPKGGW-EDDETVSEAACREALEEAGVRGL---LDENPLGEWEFRSKSRMNSCNSKEGGCRG 119 (223)
Q Consensus 46 ~~~VLLv~r~~~--~~W~lPGG~v-E~gEs~~eAA~REl~EEtGl~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 119 (223)
..-+|||+++-+ +.|.||-+.. +.++++..+|.|++..-.|=... +...++|...+..+...... .....++
T Consensus 138 r~LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e--~~~~sk~ 215 (263)
T KOG4548|consen 138 RKLYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTE--EPVSSKV 215 (263)
T ss_pred ceEEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCccccccc--cccccee
Confidence 346788885422 4599999999 99999999999999998886532 22235564333332222211 0011345
Q ss_pred EEEEEEecccccCCCCcCcceeEEEeHHHHhhccCC
Q 027463 120 YMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRY 155 (223)
Q Consensus 120 ~~f~~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~ 155 (223)
++|.+.+-..... ....-.+..|++-+++.+.+..
T Consensus 216 ff~k~~lv~~~~~-kn~n~edfvWvTkdel~e~l~~ 250 (263)
T KOG4548|consen 216 FFFKASLVANSNQ-KNQNKEDFVWVTKDELGEKLPK 250 (263)
T ss_pred EEeeeeeccccch-hcccccceEEechHHHhhhcch
Confidence 6665543322110 1112235899999999988764
No 102
>PRK10880 adenine DNA glycosylase; Provisional
Probab=92.80 E-value=1.6 Score=39.27 Aligned_cols=95 Identities=14% Similarity=0.072 Sum_probs=47.6
Q ss_pred EEEEEEeCCC----CCeecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeeccCCCccCCCCCCceEEEEEE
Q 027463 48 LVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFA 123 (223)
Q Consensus 48 ~VLLv~r~~~----~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~ 123 (223)
++||.+|+.+ |.|+||.. +.. ...++..|+.|+...... .++.+.+..++.. .....|.
T Consensus 243 ~~~l~~r~~~gl~~gl~~fP~~--~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~H~fTH~~---------~~~~~~~ 305 (350)
T PRK10880 243 EVWLEQRPPSGLWGGLFCFPQF--ADE-----EELRQWLAQRGIAADNLT-QLTAFRHTFSHFH---------LDIVPMW 305 (350)
T ss_pred EEEEEECCccChhhccccCCCC--cch-----hhHHHHHHhcCCchhhhc-ccCceEEEEeeEE---------EEEEEEE
Confidence 7888888765 45999963 211 124566677787532221 2333333222211 1122333
Q ss_pred EEecccccCCCCcCcceeEEEeHHHHhhccCChHHHHHH
Q 027463 124 LEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDAL 162 (223)
Q Consensus 124 ~~v~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~~~~~l 162 (223)
+........ .......|++++++.+.....-++.++
T Consensus 306 ~~~~~~~~~---~~~~~~~w~~~~~~~~~~~p~~~~k~l 341 (350)
T PRK10880 306 LPVSSFTGC---MDEGNGLWYNLAQPPSVGLAAPVERLL 341 (350)
T ss_pred EEccccccc---cCCcCCeEechHHhcccCCcHHHHHHH
Confidence 333211110 011234699999999876655454544
No 103
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=87.56 E-value=1.5 Score=38.50 Aligned_cols=88 Identities=26% Similarity=0.197 Sum_probs=54.6
Q ss_pred eecCCcccCCCCCHHHHHHHHHHHHhCceeeecCCCeeEEEeecc-CCCccCCCCCCceEEEEEEEEecccc------cC
Q 027463 60 LVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSK-SRMNSCNSKEGGCRGYMFALEVTEEL------ES 132 (223)
Q Consensus 60 W~lPGG~vE~gEs~~eAA~REl~EEtGl~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~f~~~v~~~~------~~ 132 (223)
.+|-.|.++..-|..+-|+||..||+|.++-... +--.-.|.+. +..+ ....+|.++++... ..
T Consensus 286 lELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~-~k~va~y~sGVG~SG--------~~QTmfy~eVTdA~rsgpGgg~ 356 (405)
T KOG4432|consen 286 LELCAGRVDDPFSDPEKAARESVEECGYDLPEDS-FKLVAKYISGVGQSG--------DTQTMFYVEVTDARRSGPGGGE 356 (405)
T ss_pred eeeecccCCCCcccHHHHHHHHHHHhCCCCCHHH-HhhhheeecccCCcC--------CeeEEEEEEeehhhccCCCCCc
Confidence 3556799998899999999999999999864432 1111122221 1111 13345556665422 12
Q ss_pred CCCcCcceeEEEeHHHHhhccCCh
Q 027463 133 WPEQANYKRIWLSVEEAFKSCRYD 156 (223)
Q Consensus 133 ~~~~e~~~~~W~~~~e~~~~l~~~ 156 (223)
..++|..+..-++++++..+...+
T Consensus 357 ~ee~E~IEvv~lsle~a~~~~~q~ 380 (405)
T KOG4432|consen 357 KEEDEDIEVVRLSLEDAPSLYRQH 380 (405)
T ss_pred ccccceeeEEEechhhhhHHHhcc
Confidence 234466788899999998876543
No 104
>PF14443 DBC1: DBC1
Probab=72.67 E-value=22 Score=27.23 Aligned_cols=33 Identities=12% Similarity=0.003 Sum_probs=23.8
Q ss_pred CCeec--CCcccCC-CCCHHHHHHHHHHHHhCceee
Q 027463 58 DDLVF--PKGGWED-DETVSEAACREALEEAGVRGL 90 (223)
Q Consensus 58 ~~W~l--PGG~vE~-gEs~~eAA~REl~EEtGl~~~ 90 (223)
|.|+- =||-.+. ...+..+|+|=+++-|||+..
T Consensus 24 G~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS 59 (126)
T PF14443_consen 24 GPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLS 59 (126)
T ss_pred CcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchh
Confidence 44633 3545444 357999999999999999964
No 105
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=65.60 E-value=6.1 Score=23.94 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=12.1
Q ss_pred ecCCcccCCCCCHHHHHHHHHHHHh
Q 027463 61 VFPKGGWEDDETVSEAACREALEEA 85 (223)
Q Consensus 61 ~lPGG~vE~gEs~~eAA~REl~EEt 85 (223)
.+-||...+|--+...++||+.||.
T Consensus 12 tClggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 12 TCLGGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp -----------S-HHHHHHHHHHHH
T ss_pred HHhcccCCCCCCCchHHHHHHHHHH
Confidence 4568888889889999999999995
No 106
>PRK13910 DNA glycosylase MutY; Provisional
Probab=64.19 E-value=1e+02 Score=27.05 Aligned_cols=25 Identities=8% Similarity=-0.071 Sum_probs=17.6
Q ss_pred eeEEEeHHHHhhccCChHHHHHHHH
Q 027463 140 KRIWLSVEEAFKSCRYDWMIDALKK 164 (223)
Q Consensus 140 ~~~W~~~~e~~~~l~~~~~~~~l~~ 164 (223)
..+|++++++.......-++.++..
T Consensus 256 ~~~w~~~~~~~~~~~p~~~~k~~~~ 280 (289)
T PRK13910 256 PIRFYSLKDLETLPISSMTLKILNF 280 (289)
T ss_pred cceEecHHHhhhcCCcHHHHHHHHH
Confidence 3489999999887665555555543
No 107
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=63.24 E-value=14 Score=24.35 Aligned_cols=33 Identities=18% Similarity=0.130 Sum_probs=21.4
Q ss_pred EEEEEeCCCCCeecCCcccCCCCCHHHHHHHHHHHH
Q 027463 49 VLMISTPNRDDLVFPKGGWEDDETVSEAACREALEE 84 (223)
Q Consensus 49 VLLv~r~~~~~W~lPGG~vE~gEs~~eAA~REl~EE 84 (223)
+-|+.+..+..|.+|||.+-.+- -.|.|+++|-
T Consensus 13 itl~ys~~~~GWl~Pgg~vi~NP---lkAqR~AE~~ 45 (60)
T PF07026_consen 13 ITLPYSHFKNGWLMPGGKVITNP---LKAQRLAEEL 45 (60)
T ss_pred EEEEEEeccceeecCCCeeEcCH---HHHHHHHHHH
Confidence 44455555667999999997652 2456666553
No 108
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=42.12 E-value=9.2 Score=34.04 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=29.4
Q ss_pred CCeecCCcccCCCCCHHHHHHHHHHHHhCcee
Q 027463 58 DDLVFPKGGWEDDETVSEAACREALEEAGVRG 89 (223)
Q Consensus 58 ~~W~lPGG~vE~gEs~~eAA~REl~EEtGl~~ 89 (223)
..|.||.|++..||-+..+++|+..||+|...
T Consensus 264 e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~ 295 (348)
T KOG2937|consen 264 ENWTFPKGKISRGEKPRDASIRSTFEEPGFPF 295 (348)
T ss_pred ccccCcccccccCCccccchhhhcCCCcCCcc
Confidence 35999999999999999999999999999873
No 109
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=29.02 E-value=1.7e+02 Score=25.32 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=14.3
Q ss_pred eEEEEEEeCCC----CCeecCCc
Q 027463 47 VLVLMISTPNR----DDLVFPKG 65 (223)
Q Consensus 47 ~~VLLv~r~~~----~~W~lPGG 65 (223)
.++||.+++.+ |.|.||+.
T Consensus 239 ~~~~~~~r~~~~~~~gl~~~p~~ 261 (275)
T TIGR01084 239 GEVLLEQRPEKGLWGGLYCFPQF 261 (275)
T ss_pred CeEEEEeCCCCchhhccccCCCC
Confidence 37888888765 45999973
No 110
>PF06453 LT-IIB: Type II heat-labile enterotoxin , B subunit (LT-IIB); InterPro: IPR010503 These are B subunits from the type II heat-labile enterotoxin. The B subunits form a pentameric ring, which interacts with one A subunit. Thus, the structural arrangement of type I and type II heat-labile enterotoxins are very similar [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1TII_F 1QCB_E 1QB5_D.
Probab=21.72 E-value=73 Score=23.60 Aligned_cols=68 Identities=16% Similarity=0.238 Sum_probs=26.7
Q ss_pred cccccccccccccC-----CceeEEEEEEEeccCCccccccccCCceEEEEEEeCCCCCeecCCcccCCCCCHHHHHHHH
Q 027463 6 LQARKGRLRQRYED-----QLRLVAGCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACRE 80 (223)
Q Consensus 6 ~~~~~~~~~~~~~~-----~~r~~~g~I~~~~~~~~~~~~~~~~~~~~VLLv~r~~~~~W~lPGG~vE~gEs~~eAA~RE 80 (223)
++.+.|... .|.| ...++.|+-+...- .|++.+.+=+-+....++.|.+|||.-=+ +....+-.|-
T Consensus 19 ~~~yAgvS~-~Fkd~C~~TTA~iV~~V~L~k~~-------sDvN~~t~GiYv~sstG~~w~Ipgg~~YP-dN~ls~EmRK 89 (122)
T PF06453_consen 19 LQTYAGVSK-HFKDNCNSTTAKIVQGVQLVKYI-------SDVNKNTKGIYVVSSTGGVWFIPGGQDYP-DNYLSNEMRK 89 (122)
T ss_dssp --------H-HHHHHHTTSSSEEEEEE-EEEEE-------EE-STTT-EEEEEETTS-EEEE---SSTT-HHHHHHHHHH
T ss_pred ccccccHHH-HHHhhhhhhHHHHHhhhhhhhhh-------hhccCCCCcEEEEeCCCCeEEccCCCcCc-hhHhhHHHHH
Confidence 455555542 3322 34555555554432 22233334455666666789999998554 3455544554
Q ss_pred HH
Q 027463 81 AL 82 (223)
Q Consensus 81 l~ 82 (223)
+.
T Consensus 90 iA 91 (122)
T PF06453_consen 90 IA 91 (122)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 111
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=20.65 E-value=61 Score=29.10 Aligned_cols=30 Identities=30% Similarity=0.166 Sum_probs=23.6
Q ss_pred eecCCcccCCCCCHHHHHHHHHHHHhCcee
Q 027463 60 LVFPKGGWEDDETVSEAACREALEEAGVRG 89 (223)
Q Consensus 60 W~lPGG~vE~gEs~~eAA~REl~EEtGl~~ 89 (223)
|.--+=.++..+-..+.+.||++||++|-+
T Consensus 402 YVa~KL~V~~~dLsDe~~MrelReeL~IG~ 431 (466)
T PF09505_consen 402 YVAKKLGVEPMDLSDEYVMRELREELNIGV 431 (466)
T ss_pred HHHHhhCCChhhcccHHHHHHHHHhcCcce
Confidence 444445577888888999999999999764
Done!