BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027464
MVGALSVVGSSVMDSHAGPCLCLDALPTSVKGGGELVLRRNSSVKRKKVKVAARSLELGS
SFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQIQNYF
TYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSETFVLFLFLNIKR
NASTEDVVCVFPLKLQNNNPISIMFIMIYLSGFVEVRLGVLGN

High Scoring Gene Products

Symbol, full name Information P value
RbcX2
AT5G19855 		protein from Arabidopsis thaliana 9.4e-27

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027464
        (223 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006621 - symbol:RbcX2 "AT5G19855" species:3...   301  9.4e-27   1


>TAIR|locus:505006621 [details] [associations]
            symbol:RbcX2 "AT5G19855" species:3702 "Arabidopsis
            thaliana" [GO:0009570 "chloroplast stroma" evidence=IDA]
            [GO:0044183 "protein binding involved in protein folding"
            evidence=IDA] [GO:0061077 "chaperone-mediated protein folding"
            evidence=IDA] EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570
            GO:GO:0044183 GO:GO:0061077 EMBL:AY088169 EMBL:BT004014
            EMBL:BT005149 IPI:IPI00527508 RefSeq:NP_568382.1 UniGene:At.31246
            ProteinModelPortal:Q8L9X2 SMR:Q8L9X2 STRING:Q8L9X2 PRIDE:Q8L9X2
            EnsemblPlants:AT5G19855.1 GeneID:832106 KEGG:ath:AT5G19855
            TAIR:At5g19855 eggNOG:NOG14198 HOGENOM:HOG000240504
            InParanoid:Q8L9X2 OMA:HIITNRP PhylomeDB:Q8L9X2
            ProtClustDB:CLSN2713656 ArrayExpress:Q8L9X2 Genevestigator:Q8L9X2
            InterPro:IPR003435 Pfam:PF02341 Uniprot:Q8L9X2
        Length = 203

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 65/113 (57%), Positives = 75/113 (66%)

Query:    57 ELGSSFVDSWDDWRLSSKVISNMVNXXXXXXXXXXXXXPVIVNE-VGGQYEDSFEDVKKQ 115
             ELGSSF  S   +RLS K +S + N              +IVNE V G Y+D+F DV+KQ
Sbjct:    44 ELGSSFTGSRIVFRLSPKRVSRIANRKSKKL--------LIVNEDVAGNYDDTFGDVQKQ 95

Query:   116 IQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSE 168
             I NYFTYKAVRTVLHQLYEMNP QY WFYN + TN+P DGK F+R LGK   E
Sbjct:    96 IVNYFTYKAVRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQE 148


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.139   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      223       190   0.00091  110 3  11 22  0.42    32
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  166 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.13u 0.07s 15.20t   Elapsed:  00:00:02
  Total cpu time:  15.13u 0.07s 15.20t   Elapsed:  00:00:02
  Start:  Fri May 10 17:01:23 2013   End:  Fri May 10 17:01:25 2013

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