Query 027464
Match_columns 223
No_of_seqs 79 out of 81
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 17:19:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027464.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027464hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ka1_A RBCX protein; chaperone 100.0 2.5E-41 8.4E-46 272.9 6.5 93 107-202 5-101 (126)
2 3hyb_A RBCX protein; rubisco, 100.0 2.7E-40 9.2E-45 274.3 7.2 95 104-202 22-120 (155)
3 2peq_A ORF134; helix bundle, p 100.0 1.4E-38 4.7E-43 258.7 9.2 102 107-211 5-113 (134)
4 2py8_A Hypothetical protein RB 100.0 3.6E-38 1.2E-42 259.6 8.9 89 106-197 4-92 (147)
5 2l9d_A Uncharacterized protein 68.8 1.2 4E-05 35.3 0.4 24 130-153 68-91 (108)
6 3kat_A Nacht, LRR and PYD doma 53.1 11 0.00038 29.0 3.4 55 118-174 46-100 (107)
7 4a5p_A Protein MXIA, protein V 46.5 12 0.00039 34.5 2.9 46 118-166 193-238 (383)
8 2x49_A INVA, invasion protein 45.9 15 0.0005 33.0 3.4 48 116-166 141-188 (333)
9 1pve_A HHR23B, UV excision rep 31.6 29 0.001 25.3 2.5 17 124-140 28-44 (72)
10 1pdn_C Protein (PRD paired); p 28.7 1.1E+02 0.0039 20.8 5.1 46 125-170 36-95 (128)
11 2kfd_A PRE-mRNA-processing pro 28.1 13 0.00044 27.5 0.1 29 106-134 33-64 (69)
12 3mix_A Flagellar biosynthesis 27.6 54 0.0019 29.9 4.1 51 114-166 184-234 (382)
13 3hjl_A Flagellar motor switch 25.5 88 0.003 27.9 5.0 99 110-211 24-141 (329)
14 3ig5_A Glutamate-cysteine liga 25.3 32 0.0011 34.4 2.3 69 115-196 591-664 (692)
15 2f4m_B UV excision repair prot 24.9 34 0.0012 24.1 1.8 16 125-140 27-42 (61)
16 4adn_A FAR1; antibiotic resist 23.9 76 0.0026 27.4 4.1 41 122-162 47-88 (222)
17 2p1h_A APAF-1, apoptotic prote 22.2 51 0.0018 23.2 2.3 53 119-173 36-89 (94)
18 3a5i_A Flagellar biosynthesis 21.9 33 0.0011 31.6 1.5 47 117-166 198-245 (389)
19 4b4s_A BCL-2-like protein 10; 21.2 74 0.0025 26.1 3.4 40 107-146 5-62 (175)
No 1
>3ka1_A RBCX protein; chaperone, helix bundle, rubisco assembly; 1.71A {Thermosynechococcus elongatus bp-1} PDB: 3q20_A
Probab=100.00 E-value=2.5e-41 Score=272.92 Aligned_cols=93 Identities=28% Similarity=0.431 Sum_probs=88.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHhHhcCCCCCHHHHHHHHhccchhhhhhhhhhhhhhhhhhhh
Q 027464 107 DSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSETFVLFLFLNIKRNASTED 186 (223)
Q Consensus 107 d~f~DtAk~L~nYfTYqAVRtVLaQL~EtNP~~y~WL~nF~s~n~~qDGe~FL~~L~rE~qeLA~RIM~ltVvRea~Aee 186 (223)
+-++||||+|+|||||||||+||+||+||||++|.||+||+++|||||||+||++|++|+|+||+||| +| |+|||++
T Consensus 5 ~ia~Dtak~L~~yfTY~Avr~Vl~QL~E~np~~~~wL~~F~~~~~~~DGe~fl~~L~~E~~~LA~RIM--~v-R~hla~~ 81 (126)
T 3ka1_A 5 HIAKQTTKTLISYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESIQDGERYLEALFREQPDLGFRIL--TV-REHLAEM 81 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCHHHHHHHH--HH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCccHHHHHHHHHhhCHHHHHHHH--HH-HHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999998 97 9999999
Q ss_pred hhhchhhhh----hccCCee
Q 027464 187 VVCVFPLKL----QNNNPIS 202 (223)
Q Consensus 187 v~eflPe~~----~~~n~~~ 202 (223)
++||+|||+ ++.|.+.
T Consensus 82 v~d~l~eMv~~~I~q~N~e~ 101 (126)
T 3ka1_A 82 VADYLPEMLRAGIQQANLQQ 101 (126)
T ss_dssp HGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 999999996 6666654
No 2
>3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET: SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A* 3rg6_C
Probab=100.00 E-value=2.7e-40 Score=274.31 Aligned_cols=95 Identities=32% Similarity=0.476 Sum_probs=89.9
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHhHhcCCCCCHHHHHHHHhccchhhhhhhhhhhhhhhhh
Q 027464 104 QYEDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSETFVLFLFLNIKRNAS 183 (223)
Q Consensus 104 ~yEd~f~DtAk~L~nYfTYqAVRtVLaQL~EtNP~~y~WL~nF~s~n~~qDGe~FL~~L~rE~qeLA~RIM~ltVvRea~ 183 (223)
+..+-++||||+|+||||||||||||+||+||||++|.||+||++ |||||||+||++||+|+|+||+||| +| |+||
T Consensus 22 ~~k~iakDtak~L~~YfTYqAvr~VLaQL~EtNP~~y~wL~~F~s-~~iqDGe~fl~~L~~E~~~LA~RIM--~V-Rehl 97 (155)
T 3hyb_A 22 NLKQIAKDTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSA-GKVQDGEKYIEELFLEKPDLALRIM--TV-REHI 97 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-TCCSSHHHHHHHHHHHCHHHHHHHH--HH-HHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHc-CCcccHHHHHHHHHhhCHHHHHHHH--HH-HHHH
Confidence 346778999999999999999999999999999999999999999 9999999999999999999999998 97 9999
Q ss_pred hhhhhhchhhhh----hccCCee
Q 027464 184 TEDVVCVFPLKL----QNNNPIS 202 (223)
Q Consensus 184 Aeev~eflPe~~----~~~n~~~ 202 (223)
|++|+||+|||+ ++.|.+.
T Consensus 98 ae~v~eflpeMv~~~IqqaN~el 120 (155)
T 3hyb_A 98 AEEIAEFLPEMVVTGIQQANMEK 120 (155)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 7777665
No 3
>2peq_A ORF134; helix bundle, protein complex assembly, chaperone; 1.90A {Synechococcus SP} SCOP: a.280.1.1 PDB: 2pem_A 2pen_A 2z44_A 2z45_A 2z46_A 2pek_A 2pej_A 2pei_A
Probab=100.00 E-value=1.4e-38 Score=258.71 Aligned_cols=102 Identities=22% Similarity=0.357 Sum_probs=89.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHhHhcCCCCCHHHHHHHHhccchhhhhhhhhhhhhhhhhhhh
Q 027464 107 DSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSETFVLFLFLNIKRNASTED 186 (223)
Q Consensus 107 d~f~DtAk~L~nYfTYqAVRtVLaQL~EtNP~~y~WL~nF~s~n~~qDGe~FL~~L~rE~qeLA~RIM~ltVvRea~Aee 186 (223)
+-++|||++|++||||||||+||+||+|||||+|.||++|+++|||+|||+||++||+|+|+||+||| +| |+|||++
T Consensus 5 ~~~~daAk~L~~yfTy~AvR~Vl~QL~e~np~~~~wL~~F~~~~~l~DGd~fL~~L~~e~~~LAlRIM--~V-Re~ya~e 81 (134)
T 2peq_A 5 KVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRIL--TV-RENLAEG 81 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCTTSHHHHHHHHHTTCHHHHHHHH--HH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcCCCccHHHHHHHHHhHCHHHHHHHH--HH-HHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999998 97 9999999
Q ss_pred hhhchhhhh----hccCCee---eeeeeeeec
Q 027464 187 VVCVFPLKL----QNNNPIS---IMFIMIYLS 211 (223)
Q Consensus 187 v~eflPe~~----~~~n~~~---~~~~~~yls 211 (223)
++||+|+|+ ++.|.+. |+.-++.++
T Consensus 82 ~~e~l~~m~~~~I~~~N~~lmR~~ler~t~~~ 113 (134)
T 2peq_A 82 VLEFLPEMVLSQIKQSNGNHRRSLLERLTQVD 113 (134)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999975 4556554 444454444
No 4
>2py8_A Hypothetical protein RBCX; all helical fold, chaperone; HET: PE4; 2.45A {Synechocystis SP} SCOP: a.280.1.1
Probab=100.00 E-value=3.6e-38 Score=259.57 Aligned_cols=89 Identities=27% Similarity=0.433 Sum_probs=85.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHhHhcCCCCCHHHHHHHHhccchhhhhhhhhhhhhhhhhhh
Q 027464 106 EDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSETFVLFLFLNIKRNASTE 185 (223)
Q Consensus 106 Ed~f~DtAk~L~nYfTYqAVRtVLaQL~EtNP~~y~WL~nF~s~n~~qDGe~FL~~L~rE~qeLA~RIM~ltVvRea~Ae 185 (223)
.+.|+|||++|++|||||||||||+||+||||++|.||++|+++|||+|||+||++||+|+|+||+||| +| |+|||+
T Consensus 4 k~~~kdaAk~L~~yfTy~AvR~VL~QL~EtNP~~y~wL~~Fl~~npl~DGd~fL~~Lmre~~~LAlRIM--eV-R~~ya~ 80 (147)
T 2py8_A 4 KHIAQATVKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDENKELVLRIL--AV-REDIAE 80 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCSSHHHHHHHHHTTCHHHHHHHH--HH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhcCCCccHHHHHHHHHhhCHHHHHHHH--HH-HHHHHH
Confidence 357899999999999999999999999999999999999999999999999999999999999999998 97 999999
Q ss_pred hhhhchhhhhhc
Q 027464 186 DVVCVFPLKLQN 197 (223)
Q Consensus 186 ev~eflPe~~~~ 197 (223)
+++||+|+++..
T Consensus 81 e~fe~l~em~~~ 92 (147)
T 2py8_A 81 SVLDFLPGMTRN 92 (147)
T ss_dssp HHGGGHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 5
>2l9d_A Uncharacterized protein; PG9854E, structural genomics, PSI-biology, protein structure initiative, unknown function; NMR {Methylobacillus flagellatus}
Probab=68.77 E-value=1.2 Score=35.25 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=22.1
Q ss_pred HHhhcCChhhHHHHHHhHhcCCCC
Q 027464 130 HQLYEMNPTQYMWFYNFVATNKPG 153 (223)
Q Consensus 130 aQL~EtNP~~y~WL~nF~s~n~~q 153 (223)
.+|++.||.+|..++||...|.+|
T Consensus 68 ~~L~~~~P~af~fvm~FA~dN~L~ 91 (108)
T 2l9d_A 68 LKLKDTNPEGFNQLMHFATENQLN 91 (108)
T ss_dssp THHHHHCHHHHHHHHHHHHHHTEE
T ss_pred cHhhhcChHHHHHHHHHHHhCCce
Confidence 579999999999999999999875
No 6
>3kat_A Nacht, LRR and PYD domains-containing protein 1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 3.10A {Homo sapiens}
Probab=53.11 E-value=11 Score=28.96 Aligned_cols=55 Identities=9% Similarity=0.132 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHhhcCChhhHHHHHHhHhcCCCCCHHHHHHHHhccchhhhhhhh
Q 027464 118 NYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVSETFVLFL 174 (223)
Q Consensus 118 nYfTYqAVRtVLaQL~EtNP~~y~WL~nF~s~n~~qDGe~FL~~L~rE~qeLA~RIM 174 (223)
++||-.-..+|.++ .|++.+..-|.+++..-.+.--+.|+..|-+.+|-|+.-++
T Consensus 46 ~VLteee~e~I~ae--~T~q~k~R~Lld~v~~kG~~A~~~F~~~L~e~dp~L~~~L~ 100 (107)
T 3kat_A 46 QVLSQEQYERVLAE--NTRPSQMRKLFSLSQSWDRKCKDGLYQALKETHPHLIMELW 100 (107)
T ss_dssp TTSCHHHHHHHHHC--CSHHHHHHHHHHGGGGCCTTHHHHHHHHHHHHCHHHHHHHH
T ss_pred hhCCHHHHHHHHhC--CCCHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCHHHHHHHH
Confidence 46777777888774 78999999999999988899999999999988999998875
No 7
>4a5p_A Protein MXIA, protein VIRH; protein transport, type three secretion, export apparatus; HET: MLY; 3.15A {Shigella flexneri}
Probab=46.48 E-value=12 Score=34.47 Aligned_cols=46 Identities=11% Similarity=0.046 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhhcCChhhHHHHHHhHhcCCCCCHHHHHHHHhccc
Q 027464 118 NYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVV 166 (223)
Q Consensus 118 nYfTYqAVRtVLaQL~EtNP~~y~WL~nF~s~n~~qDGe~FL~~L~rE~ 166 (223)
.+|++|-+|..|++|++.+|..-..|. ..-+++.=-+=|+.|++|+
T Consensus 193 ellg~QEvq~LLd~L~~~~P~LVeEl~---~~l~l~~i~~VLq~LL~E~ 238 (383)
T 4a5p_A 193 EIFGIQETKNMLDQFENRYPDLLXEVF---RHVTIQRISEVLQRLLGEN 238 (383)
T ss_dssp GTSCHHHHHHHHHHHHTTCHHHHHHHH---TTCCHHHHHHHHHHHHTTT
T ss_pred HHhCHHHHHHHHHHHHHhChHHHHHHH---ccCCHHHHHHHHHHHHhCC
Confidence 678999999999999999999999886 3334445556788888885
No 8
>2x49_A INVA, invasion protein INVA; protein transport, transport, pathogenesis; 1.50A {Salmonella enterica subsp} PDB: 2x4a_A* 3lw9_A
Probab=45.93 E-value=15 Score=32.99 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCChhhHHHHHHhHhcCCCCCHHHHHHHHhccc
Q 027464 116 IQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVV 166 (223)
Q Consensus 116 L~nYfTYqAVRtVLaQL~EtNP~~y~WL~nF~s~n~~qDGe~FL~~L~rE~ 166 (223)
...+|++|-++..|++|++.+|..-..|.+- -+++.=-+=|+.|++|+
T Consensus 141 a~ellg~qEvq~Lld~l~~~~p~LveElp~~---l~l~~i~~VLq~LL~E~ 188 (333)
T 2x49_A 141 VNEYFGIQETKHMLDQLEAKFPDLLKEVLRH---ATVQRISEVLQRLLSER 188 (333)
T ss_dssp GGGTCSHHHHHHHHHHHHTTCHHHHHHHHTT---SCHHHHHHHHHHHHTTT
T ss_pred HHHHhCHHHHHHHHHHHHHHChHHHHHHhcc---CCHHHHHHHHHHHHhCC
Confidence 3458999999999999999999998887433 34444456677777774
No 9
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=31.59 E-value=29 Score=25.26 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=11.4
Q ss_pred HHHHHHHHhhcCChhhH
Q 027464 124 AVRTVLHQLYEMNPTQY 140 (223)
Q Consensus 124 AVRtVLaQL~EtNP~~y 140 (223)
++..+|.||.++||..+
T Consensus 28 lL~~lLqqL~~~NPqL~ 44 (72)
T 1pve_A 28 LLPALLQQIGRENPQLL 44 (72)
T ss_dssp GHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhHCHHHH
Confidence 45566777777777655
No 10
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=28.71 E-value=1.1e+02 Score=20.84 Aligned_cols=46 Identities=11% Similarity=0.004 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCChhhHHHHHHhHhcCCC-------------C-CHHHHHHHHhccchhhh
Q 027464 125 VRTVLHQLYEMNPTQYMWFYNFVATNKP-------------G-DGKHFIRILGKVVSETF 170 (223)
Q Consensus 125 VRtVLaQL~EtNP~~y~WL~nF~s~n~~-------------q-DGe~FL~~L~rE~qeLA 170 (223)
++.+..+|.=.....+.|+..|-..+.. . +=+.++.++++++|++.
T Consensus 36 ~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~~i~~~~~~~~~~s 95 (128)
T 1pdn_C 36 PCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMF 95 (128)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHHHHTTTTCTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHHHHHHHHHhCcchH
Confidence 3444444443334889999998653311 1 13456777777766543
No 11
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=28.11 E-value=13 Score=27.46 Aligned_cols=29 Identities=21% Similarity=0.492 Sum_probs=24.8
Q ss_pred ccchHHHHHHHHHHHHHHHH---HHHHHHhhc
Q 027464 106 EDSFEDVKKQIQNYFTYKAV---RTVLHQLYE 134 (223)
Q Consensus 106 Ed~f~DtAk~L~nYfTYqAV---RtVLaQL~E 134 (223)
-.+|+|+.+.|++|.-|+|+ --|..||.|
T Consensus 33 Pe~WE~A~~~I~~~~Ey~~l~~E~~v~~qif~ 64 (69)
T 2kfd_A 33 PSTWDLASKELGESLEYKALGDEDNIRRQIFE 64 (69)
T ss_dssp CSSHHHHHHHHTTSTTSGGGTTSHHHHHHHHH
T ss_pred CccHHHHHHHHccCHHHHHhhccHHHHHHHHH
Confidence 45899999999999999998 467888765
No 12
>3mix_A Flagellar biosynthesis protein FLHA; flagella biosynthesis, protein transport, type III secretion; 2.30A {Bacillus subtilis}
Probab=27.63 E-value=54 Score=29.92 Aligned_cols=51 Identities=14% Similarity=0.097 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHhHhcCCCCCHHHHHHHHhccc
Q 027464 114 KQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVV 166 (223)
Q Consensus 114 k~L~nYfTYqAVRtVLaQL~EtNP~~y~WL~nF~s~n~~qDGe~FL~~L~rE~ 166 (223)
+....+|++|-++..|++|++.+|..-..|.- ..-+++.=-+=|+.|++|+
T Consensus 184 ~~a~ellg~qEvq~LLd~l~~~~P~LVeEl~p--~~l~l~~i~~VLq~LL~E~ 234 (382)
T 3mix_A 184 QHAHELIGRQETKQLIDHLKESYPVLVEEVTP--NPLSVGDIQKVLAKLLKEK 234 (382)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHCHHHHHHHTT--TTCCHHHHHHHHHHHHHTT
T ss_pred HhHHHHhCHHHHHHHHHHHHHHChHHHHHhcc--cCCCHHHHHHHHHHHHhCC
Confidence 34567899999999999999999988777631 1123333345667777774
No 13
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=25.50 E-value=88 Score=27.90 Aligned_cols=99 Identities=14% Similarity=0.112 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC---hhh----HHHHHHhH-hcCCC-CCHHHHHHHHhccc--hhhhhhhhhhhh
Q 027464 110 EDVKKQIQNYFTYKAVRTVLHQLYEMN---PTQ----YMWFYNFV-ATNKP-GDGKHFIRILGKVV--SETFVLFLFLNI 178 (223)
Q Consensus 110 ~DtAk~L~nYfTYqAVRtVLaQL~EtN---P~~----y~WL~nF~-s~n~~-qDGe~FL~~L~rE~--qeLA~RIM~ltV 178 (223)
+|.|..+..+|+=.-++.+..+...+. |.. -..|++.+ +...+ ..| .|++.++..- ++-|..|| .=
T Consensus 24 ee~Aa~vlk~L~~~ei~~l~~~ma~l~~v~~~~~~~Vl~EF~~~~~~~~~i~~gg-~~~~~~L~~aLg~~~A~~ll--~~ 100 (329)
T 3hjl_A 24 EEVSMNIVKELSEEELQKLFALAKDLESVPEEEIENIAEELLDEIKKAGIKIKKP-EEFIENIKKVIPPTLAEKFR--GI 100 (329)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHTTCCCSCH-HHHHHHHHHHSCCCHHHHHH--HH
T ss_pred hHhHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcCCCCCch-HHHHHHHHHhCCHHHHHHHH--HH
Confidence 355666667888877777776666554 432 22333333 33444 577 9999988774 67777775 21
Q ss_pred hhhhhhhhhhhc--------hhhhhhccCCeeeeeeeeeec
Q 027464 179 KRNASTEDVVCV--------FPLKLQNNNPISIMFIMIYLS 211 (223)
Q Consensus 179 vRea~Aeev~ef--------lPe~~~~~n~~~~~~~~~yls 211 (223)
+....-...+|+ |-.+++++.|..+-.+..||.
T Consensus 101 i~~~~~~~~~~~L~~~dp~~la~~i~~EhPQtiAlILs~L~ 141 (329)
T 3hjl_A 101 LELGDAEKILKEIEKVDSRILASLLKNEHPQTIALFLSQLS 141 (329)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHTTSC
T ss_pred HhccccCCHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHcCC
Confidence 122222223444 345688888888877777764
No 14
>3ig5_A Glutamate-cysteine ligase; glutathione, ATP-grAsp, ATP-binding, glutathione biosynthesis, nucleotide-binding, phosphoprotein; HET: GLU PGE; 2.10A {Saccharomyces cerevisiae} PDB: 3ig8_A* 3lvv_A* 3lvw_A*
Probab=25.30 E-value=32 Score=34.38 Aligned_cols=69 Identities=17% Similarity=0.196 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhhHHHHHHhHhcCCC--CCH---HHHHHHHhccchhhhhhhhhhhhhhhhhhhhhhh
Q 027464 115 QIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKP--GDG---KHFIRILGKVVSETFVLFLFLNIKRNASTEDVVC 189 (223)
Q Consensus 115 ~L~nYfTYqAVRtVLaQL~EtNP~~y~WL~nF~s~n~~--qDG---e~FL~~L~rE~qeLA~RIM~ltVvRea~Aeev~e 189 (223)
.|..||.+..-|. ...=|+.+.|+.+|+.+||= +|+ |.-. -+|...+-.++- .+.-+.++.+
T Consensus 591 ~l~~YL~lI~~RA-----sG~l~T~A~w~R~FV~~Hp~Yk~DSvVs~~I~-------yDLi~~~~~I~~-~~~~~~~l~~ 657 (692)
T 3ig5_A 591 RLYYYLKLISDRA-----SGELPTTAKFFRNFVLQHPDYKHDSKISKSIN-------YDLLSTCDRLTH-LDDSKGELTS 657 (692)
T ss_dssp HHHHHHHHHHHHH-----TTSSCCHHHHHHHHHHTCTTCCSSSBCCHHHH-------HHHHHHHHHHHT-TCCTTSHHHH
T ss_pred HHHHHHHHHHHHh-----cCCCCcHHHHHHHHHhcCcccccCCcCchhhH-------HHHHHHHHHHhc-CCcCCcHHHH
Confidence 5556665554443 22237888888888888875 342 2222 234333332243 5566788888
Q ss_pred chhhhhh
Q 027464 190 VFPLKLQ 196 (223)
Q Consensus 190 flPe~~~ 196 (223)
||++.+.
T Consensus 658 ~~g~~~~ 664 (692)
T 3ig5_A 658 FLGAEIA 664 (692)
T ss_dssp HHHHHHH
T ss_pred HhhHHHH
Confidence 8887553
No 15
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=24.88 E-value=34 Score=24.09 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=9.0
Q ss_pred HHHHHHHhhcCChhhH
Q 027464 125 VRTVLHQLYEMNPTQY 140 (223)
Q Consensus 125 VRtVLaQL~EtNP~~y 140 (223)
+..+|.||.++||..+
T Consensus 27 L~~lLqql~~~nP~l~ 42 (61)
T 2f4m_B 27 LPALLQQIGRENPQLL 42 (61)
T ss_dssp HHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhHCHHHH
Confidence 3445566666666544
No 16
>4adn_A FAR1; antibiotic resistance; 1.65A {Staphylococcus aureus} PDB: 4ado_A
Probab=23.85 E-value=76 Score=27.42 Aligned_cols=41 Identities=0% Similarity=-0.066 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHhHhcC-CCCCHHHHHHHH
Q 027464 122 YKAVRTVLHQLYEMNPTQYMWFYNFVATN-KPGDGKHFIRIL 162 (223)
Q Consensus 122 YqAVRtVLaQL~EtNP~~y~WL~nF~s~n-~~qDGe~FL~~L 162 (223)
+.|..-|+..+.+.++.+..+|.....-. ...+.|.||++|
T Consensus 47 ~~~~~kI~~~f~~~~~eq~~lL~~i~~~~lt~~~~e~~L~~L 88 (222)
T 4adn_A 47 SETYNDINEIFGHIDDDIEESLKVLMNIRLSNKEIEAILNKF 88 (222)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 56677788888899999999999888877 777999999998
No 17
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=22.21 E-value=51 Score=23.16 Aligned_cols=53 Identities=9% Similarity=0.088 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHHHhHhcCCCCCHHHHHHHHhccch-hhhhhh
Q 027464 119 YFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKVVS-ETFVLF 173 (223)
Q Consensus 119 YfTYqAVRtVLaQL~EtNP~~y~WL~nF~s~n~~qDGe~FL~~L~rE~q-eLA~RI 173 (223)
.||-.=...|.++ .|+..++.-|.+.+.+..++--+.||.+|-+.++ .||.-+
T Consensus 36 vlt~~~~e~I~~~--~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La~~L 89 (94)
T 2p1h_A 36 FLTISEEEKVRNE--PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAALL 89 (94)
T ss_dssp SSCHHHHHHHHTS--SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHcC--CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHHHHH
Confidence 5665556666665 6777888889999877666777889999987765 676544
No 18
>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like fold, bacterial flagellum BIO bacterial flagellum protein export; 2.80A {Salmonella typhimurium}
Probab=21.88 E-value=33 Score=31.56 Aligned_cols=47 Identities=9% Similarity=0.002 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhhcCChhhHHHHH-HhHhcCCCCCHHHHHHHHhccc
Q 027464 117 QNYFTYKAVRTVLHQLYEMNPTQYMWFY-NFVATNKPGDGKHFIRILGKVV 166 (223)
Q Consensus 117 ~nYfTYqAVRtVLaQL~EtNP~~y~WL~-nF~s~n~~qDGe~FL~~L~rE~ 166 (223)
..+|++|-|+..|++|++.+|..-..|. +- -+++.=-+=|+.|++|+
T Consensus 198 ~ellg~qEvq~LLd~L~~~~p~LVeEl~p~~---l~l~~i~~VLq~LL~E~ 245 (389)
T 3a5i_A 198 AELFGRQEAQQLLDRVSQEMPKLTEDLVPGV---VTLTTLHKVLQNLLAEK 245 (389)
T ss_dssp TTTCCHHHHHHHHHHHHTTCHHHHHTTTTTT---SCHHHHHHHHHHHHHTT
T ss_pred HHHhCHHHHHHHHHHHHHHChHHHHHhccCC---cCHHHHHHHHHHHHhCC
Confidence 3489999999999999999998877663 22 23333345566666664
No 19
>4b4s_A BCL-2-like protein 10; apoptosis; HET: PG4; 1.90A {Homo sapiens}
Probab=21.21 E-value=74 Score=26.11 Aligned_cols=40 Identities=18% Similarity=0.464 Sum_probs=31.1
Q ss_pred cch-HHHHHHHHHHHHHHH-----------------HHHHHHHhhcCChhhHHHHHHh
Q 027464 107 DSF-EDVKKQIQNYFTYKA-----------------VRTVLHQLYEMNPTQYMWFYNF 146 (223)
Q Consensus 107 d~f-~DtAk~L~nYfTYqA-----------------VRtVLaQL~EtNP~~y~WL~nF 146 (223)
|-+ ++|...+.+||.|++ +|.+-++|++..+..|.=+.++
T Consensus 5 d~l~~~t~~L~~DYl~y~~r~p~~p~~~p~s~~aa~LR~va~ele~~~~~~f~~~~~~ 62 (175)
T 4b4s_A 5 DPLRERTELLLADYLGYSAREPGTPEPAPSTPEAAVLRSAAARLRQIHRSFFSAYLGY 62 (175)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCTTSCCCCCSSHHHHHHHHHHHHHHHHTHHHHHTTTTC
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344 569999999999987 7888999999988776544443
Done!