BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027465
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 241 bits (615), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 114/167 (68%), Positives = 138/167 (82%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
DYLFKVVLIGDS VGKSNLL+RF R+EF SKSTIGVEF T+ + ++GK +KAQIWDTA
Sbjct: 18 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 77
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
GQER+RA+TSAYYRGAVGALLVYDI++ T++++ RWL EL H+D N+V +LVGNKSDL
Sbjct: 78 GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 137
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNI 178
+ R V T E +A AE GL F+ETSALDS+NV AAFQT++TEIY I
Sbjct: 138 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 184
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 239 bits (611), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 113/165 (68%), Positives = 137/165 (83%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
DYLFKVVLIGDS VGKSNLL+RF R+EF SKSTIGVEF T+ + ++GK +KAQIWDTA
Sbjct: 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 86
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
GQER+RA+TSAYYRGAVGALLVYDI++ T++++ RWL EL H+D N+V +LVGNKSDL
Sbjct: 87 GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 146
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
+ R V T E +A AE GL F+ETSALDS+NV AAFQT++TEIY
Sbjct: 147 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 238 bits (607), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 113/167 (67%), Positives = 137/167 (82%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
DYLFKVVLIGDS VGKSNLL+RF R+EF SKSTIGVEF T+ + ++GK +KAQIWDTA
Sbjct: 6 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 65
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
G ER+RA+TSAYYRGAVGALLVYDI++ T++++ RWL EL H+D N+V +LVGNKSDL
Sbjct: 66 GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 125
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNI 178
+ R V T E +A AE GL F+ETSALDS+NV AAFQT++TEIY I
Sbjct: 126 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 172
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 236 bits (603), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 113/169 (66%), Positives = 137/169 (81%)
Query: 8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQI 67
D DYLFKVVLIGDS VGKSNLL+RF R+EF SKSTIGVEF T+ + ++GK +KAQI
Sbjct: 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 82
Query: 68 WDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGN 127
WDTAG ER+RA+TSAYYRGAVGALLVYDI++ T++++ RWL EL H+D N+V +LVGN
Sbjct: 83 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 128 KSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
KSDL+ R V T E +A AE GL F+ETSALDS+NV AAFQT++TEIY
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 236 bits (601), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 112/165 (67%), Positives = 135/165 (81%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
DYLFKVVLIGDS VGKSNLL+RF R+EF SKSTIGVEF T+ + ++GK +KAQIWDTA
Sbjct: 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
G ER+RA+TSAYYRGAVGALLVYDI++ T++++ RWL EL H+D N+V LVGNKSDL
Sbjct: 63 GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDL 122
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
+ R V T E +A AE GL F+ETSALDS+NV AAFQT++TEIY
Sbjct: 123 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 235 bits (600), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 111/171 (64%), Positives = 138/171 (80%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
DYLFKVVLIGDS VGKSNLL+RF R+EF SKSTIGVEF T+ + ++GK +KAQIWDTA
Sbjct: 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
GQER+R +TSAYYRGAVGALLVYDI++ T++++ RWL EL H+D N+V +LVGNKSDL
Sbjct: 63 GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 122
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
+ R V T E +A AE L F+ETSALDS+NV AF+ ++TEIY I+S+K
Sbjct: 123 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 173
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 235 bits (600), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 113/169 (66%), Positives = 136/169 (80%)
Query: 8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQI 67
D DYLFKVVLIGDS VGKSNLL+RF R+EF SKSTIGVEF T+ + ++GK +KAQI
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 68 WDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGN 127
WDTAG ER+RA+TSAYYRGAVGALLVYDI++ T++++ RWL EL H+D N+V LVGN
Sbjct: 65 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGN 124
Query: 128 KSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
KSDL+ R V T E +A AE GL F+ETSALDS+NV AAFQT++TEIY
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 216 bits (549), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 103/172 (59%), Positives = 134/172 (77%), Gaps = 1/172 (0%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI-NGKEVKAQIWDT 70
DYLFK+VLIGDS VGKSNLL+RF RDEF SKSTIGVEF T+ + + N K +KAQIWDT
Sbjct: 5 DYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDT 64
Query: 71 AGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSD 130
AGQER+RA+TSAYYRGAVGALLVYDI+++ +F++I +WL EL ++D N+V +LVGNKSD
Sbjct: 65 AGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSD 124
Query: 131 LKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
LK R + + A+ + L F+ETSAL+++NV AF ++ EIYN+ +K
Sbjct: 125 LKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKK 176
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 216 bits (549), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 103/174 (59%), Positives = 136/174 (78%), Gaps = 2/174 (1%)
Query: 11 EDY--LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIW 68
EDY +FKVVLIG+S VGK+NLL+RF R+EF +S++TIGVEF T+ + + VKAQIW
Sbjct: 5 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 64
Query: 69 DTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNK 128
DTAG ER+RA+TSAYYRGAVGALLV+D+++ QT+ + RWL EL+ H++ +V +LVGNK
Sbjct: 65 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNK 124
Query: 129 SDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
SDL AREV T E + AE GL F+ETSALDS+NV AF+TV+ EI+ +S++
Sbjct: 125 SDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 216 bits (549), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 103/175 (58%), Positives = 137/175 (78%), Gaps = 2/175 (1%)
Query: 10 AEDY--LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQI 67
+EDY +FKVVLIG+S VGK+NLL+RF R+EF +S++TIGVEF T+ + + VKAQI
Sbjct: 19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQI 78
Query: 68 WDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGN 127
WDTAG ER+RA+TSAYYRGAVGALLV+D+++ QT+ + RWL EL+ H++ +V +LVGN
Sbjct: 79 WDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGN 138
Query: 128 KSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
KSDL AREV T E + AE GL F+ETSALDS+NV AF+TV+ EI+ +S++
Sbjct: 139 KSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 215 bits (548), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/206 (53%), Positives = 142/206 (68%), Gaps = 6/206 (2%)
Query: 5 SEEDRAEDY--LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKE 62
S ED DY LFK+VLIGDS VGKSNLL+RF ++EF +SKSTIGVEF T+ ++I GK
Sbjct: 2 SSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKR 61
Query: 63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVT 122
+KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDIS+ ++++ WL+EL ++D NV
Sbjct: 62 IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAV 121
Query: 123 ILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
L+GNKSDL R V T E K A+ L F ETSAL+S NV AF+ ++ IY +S+
Sbjct: 122 GLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKH 181
Query: 183 VM----ISQELKQKDSSSFNGKTVVL 204
M S +S+ NG T+ L
Sbjct: 182 QMDLGDSSANGNANGASAPNGPTISL 207
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 202 bits (513), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/170 (57%), Positives = 125/170 (73%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
DYLFK+VLIGDS VGKSNLL+RF DEF SKSTIGVEF T+ +++ K++KAQIWDTA
Sbjct: 8 DYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTA 67
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
G ER+RA+TSAYYRGAVGAL+VYDIS+ ++++ WL EL ++D NV L+GNKSDL
Sbjct: 68 GLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDL 127
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSR 181
R V T E K A + F ETSAL+S NV AF+ ++ I+ ++S+
Sbjct: 128 AHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSK 177
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 189 bits (480), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 91/164 (55%), Positives = 114/164 (69%)
Query: 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72
YLFK ++IGD+ VGKS LL +F F P TIGVEF + + I+GK++K QIWDTAG
Sbjct: 9 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG 68
Query: 73 QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132
QE FR++T +YYRGA GALLVYDI+RR TF+ + WL + HS+ N+V +L+GNKSDL+
Sbjct: 69 QESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE 128
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
REV EG+A A GL FMETSA +SNV AF EIY
Sbjct: 129 SRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 172
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 187 bits (474), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 89/164 (54%), Positives = 114/164 (69%)
Query: 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72
YLFK ++IGD+ VGKS LL +F F P TIGVEF + ++I+GK++K QIWDTAG
Sbjct: 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 73 QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132
QE FR++T +YYRGA GALLVYDI+RR+TF+ + WL + HS N+V +L+GNKSDL+
Sbjct: 80 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
R+V EG+A A GL FMETSA + NV AF EIY
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIY 183
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 179 bits (453), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/189 (46%), Positives = 131/189 (69%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
DYLFK++LIG+S VGKS LL RF+ D + + STIGV+F+ + ++++GK VK QIWDTA
Sbjct: 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 65
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
GQERFR +TS+YYRG+ G ++VYD++ +++F+ + WL E+ ++ V+ +LVGNK DL
Sbjct: 66 GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 125
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQ 191
KD R V K A+A + F+ETSALDS+NV AF T+ +I +S++ + K+
Sbjct: 126 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKK 185
Query: 192 KDSSSFNGK 200
+D + N K
Sbjct: 186 EDKGNVNLK 194
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 179 bits (453), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 88/189 (46%), Positives = 131/189 (69%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
DYLFK++LIG+S VGKS LL RF+ D + + STIGV+F+ + ++++GK VK QIWDTA
Sbjct: 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 65
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
GQERFR +TS+YYRG+ G ++VYD++ +++F+ + WL E+ ++ V+ +LVGNK DL
Sbjct: 66 GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 125
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQELKQ 191
KD R V K A+A + F+ETSALDS+NV AF T+ +I +S++ + K+
Sbjct: 126 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKK 185
Query: 192 KDSSSFNGK 200
+D + N K
Sbjct: 186 EDKGNVNLK 194
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/164 (52%), Positives = 119/164 (72%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
DYLFK++LIGDS VGKS LL RFA D + + STIGV+F+ + + + K VK QIWDTA
Sbjct: 7 DYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTA 66
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
GQERFR +TS+YYRGA G ++VYD++ R +FD++ +W+ E+ ++ NV +LVGNK DL
Sbjct: 67 GQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDL 126
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
R VT+ EG+ LA++ G+ F+ETSA ++ NV AF T+ EI
Sbjct: 127 VSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 83/164 (50%), Positives = 112/164 (68%)
Query: 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72
Y+FK ++IGD VGKS LL +F +F + TIGVEF T+ ++++G+++K QIWDTAG
Sbjct: 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 73
Query: 73 QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132
QERFRAVT +YYRGA GAL+VYDI+RR T++ + WL + ++ N V IL+GNK+DL+
Sbjct: 74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
R+VT E K AE GL F+E SA NV AF +IY
Sbjct: 134 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 174 bits (441), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 83/164 (50%), Positives = 119/164 (72%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
DYLFK++LIG+S VGKS LL RF+ D + + STIGV+F+ + ++++GK VK QIWDTA
Sbjct: 19 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 78
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
GQERFR +TS+YYRG+ G ++VYD++ +++F+ + WL E+ ++ V+ +LVGNK DL
Sbjct: 79 GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 138
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
KD R V K A+A + F+ETSALDS+NV AF T+ +I
Sbjct: 139 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 173 bits (439), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 111/164 (67%)
Query: 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72
Y+FK ++IGD VGKS LL +F +F + TIGVEF T+ ++++G+++K QIWDTAG
Sbjct: 29 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 88
Query: 73 QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132
Q RFRAVT +YYRGA GAL+VYDI+RR T++ + WL + ++ N V IL+GNK+DL+
Sbjct: 89 QGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 148
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIY 176
R+VT E K AE GL F+E SA NV AF +IY
Sbjct: 149 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 192
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 172 bits (437), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
Query: 6 EEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKA 65
+ D D+LFK+VL+GD++VGK+ ++ RF F STIGV+F + ++I GK VK
Sbjct: 21 DPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKL 80
Query: 66 QIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV 125
QIWDTAGQERFR +T +YYR A GA+L YDI++R +F S+ W+ ++ ++ N+V +L+
Sbjct: 81 QIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLI 140
Query: 126 GNKSDLKDAREVTTAEGKALAEAQGLFF-METSALDSSNVTAAFQTVVTEI 175
GNKSDL + REV+ AE ++LAE + +ETSA DSSNV AF V TE+
Sbjct: 141 GNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 81/171 (47%), Positives = 120/171 (70%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
DYLFK++LIGDS VGK+ +L RF+ D F STIG++F+ + ++++GK +K QIWDTA
Sbjct: 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
GQERFR +T+AYYRGA+G +LVYDI+ ++FD+I W+ + H+ +V +++GNK D+
Sbjct: 64 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
D R+V+ G+ LA G+ FMETSA + NV AF T+ +I + +K
Sbjct: 124 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 174
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 172 bits (436), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/166 (51%), Positives = 110/166 (66%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
D+LFK ++IG + GKS LL +F ++F +S TIGVEF ++ +++ GK VK QIWDTA
Sbjct: 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
GQERFR+VT +YYRGA GALLVYDI+ R+T++S+ WL + T + N+V IL GNK DL
Sbjct: 83 GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
REVT E A+ L F+ETSAL NV AF I N
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 188
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/160 (51%), Positives = 117/160 (73%), Gaps = 1/160 (0%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
D + K++LIGDS VGKS LL RF D+F P+ +TIG++F+ + +DINGK+VK QIWDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
GQERFR +T+AYYRGA+G +LVYDI+ +TF +I +W ++ H++ +LVGNKSD+
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171
+ R VT +G+ALA+ G+ F+E+SA + NV F T+
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 123/173 (71%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
DYLFK++LIGDS VGKS LL RFA D + + STIGV+F+ + ++++GK +K QIWDTA
Sbjct: 7 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 66
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
GQERFR +TS+YYRGA G ++VYD++ ++++ ++ +WL E+ ++ NV +LVGNKSDL
Sbjct: 67 GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 126
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVM 184
+ V K A++ G+ F+ETSA +++NV AF T+ EI + +V+
Sbjct: 127 TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGLEVL 179
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 117/164 (71%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
DYLFK++LIGDS VGK+ +L RF+ D F STIG++F+ + ++++GK +K QIWDTA
Sbjct: 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 65
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
GQERFR +T+AYYRGA+G +LVYDI+ ++FD+I W+ + H+ +V +++GNK D+
Sbjct: 66 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 125
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
D R+V+ G+ LA G+ FMETSA + NV AF T+ +I
Sbjct: 126 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/164 (49%), Positives = 119/164 (72%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
DYLFK++LIGDS VGKS LL RFA D + + STIGV+F+ + ++++GK +K QIWDTA
Sbjct: 7 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 66
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
GQERFR +TS+YYRGA G ++VYD++ ++++ ++ +WL E+ ++ NV +LVGNKSDL
Sbjct: 67 GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 126
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
+ V K A++ G+ F+ETSA +++NV AF T+ EI
Sbjct: 127 TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 171 bits (433), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 119/164 (72%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
DYLFK++LIGDS VGKS LL RFA D + + STIGV+F+ + ++++GK +K QIWDTA
Sbjct: 4 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 63
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
GQERFR +TS+YYRGA G ++VYD++ +++F+++ +WL E+ ++ NV +LVGNK DL
Sbjct: 64 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 123
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
+ V K A++ G+ F+ETSA +++NV +F T+ EI
Sbjct: 124 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 171 bits (433), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 119/164 (72%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
DYLFK++LIGDS VGKS LL RFA D + + STIGV+F+ + ++++GK +K QIWDTA
Sbjct: 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 73
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
GQERFR +TS+YYRGA G ++VYD++ +++F+++ +WL E+ ++ NV +LVGNK DL
Sbjct: 74 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 133
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
+ V K A++ G+ F+ETSA +++NV +F T+ EI
Sbjct: 134 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 171 bits (432), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 119/164 (72%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
DYLFK++LIGDS VGKS LL RFA D + + STIGV+F+ + ++++GK +K QIWDTA
Sbjct: 23 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 82
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
GQERFR +TS+YYRGA G ++VYD++ +++F+++ +WL E+ ++ NV +LVGNK DL
Sbjct: 83 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 142
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
+ V K A++ G+ F+ETSA +++NV +F T+ EI
Sbjct: 143 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 170 bits (431), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 80/163 (49%), Positives = 119/163 (73%), Gaps = 1/163 (0%)
Query: 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIW 68
++ D + K++LIGDS VGKS LL RF D+F P+ +TIG++F+ + +DINGK+VK Q+W
Sbjct: 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLW 74
Query: 69 DTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNK 128
DTAGQERFR +T+AYYRGA+G +LVYD++ +TF +I +W ++ H++ +LVGNK
Sbjct: 75 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNK 134
Query: 129 SDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171
SD+ + R VT +G+ALA+ G+ F+E+SA + NV F T+
Sbjct: 135 SDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 176
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 170 bits (430), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 119/164 (72%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
DYLFK++LIGDS VGK+ LL RFA D + + STIGV+F+ + ++++GK +K QIWDTA
Sbjct: 14 DYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 73
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
GQERFR +TS+YYRGA G ++VYD++ +++F+++ +WL E+ ++ NV +LVGNK DL
Sbjct: 74 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 133
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
+ V K A++ G+ F+ETSA +++NV +F T+ EI
Sbjct: 134 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 169 bits (429), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 118/164 (71%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
DYLFK++LIGDS VGKS LL RFA D + + STIGV+F+ + ++++GK +K QIWDTA
Sbjct: 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 90
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
GQERFR +TS+YYRGA G ++VYD++ +++F+++ +WL E+ ++ NV +LVGNK DL
Sbjct: 91 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 150
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
+ V K A++ G+ F+ETSA +++NV +F T EI
Sbjct: 151 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/160 (51%), Positives = 115/160 (71%), Gaps = 1/160 (0%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
D + K++LIGDS VGKS LL RF D+F P+ +TIG++F+ + +DINGK+VK QIWDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
GQERFR +T+AYYRGA G +LVYDI+ +TF +I +W ++ H++ +LVGNKSD
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171
+ R VT +G+ALA+ G+ F+E+SA + NV F T+
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
+ K++LIGDS VGKS LL RF D+F P+ +TIG++F+ + +DINGK+VK Q+WDTAGQ
Sbjct: 7 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133
ERFR +T+AYYRGA+G +LVYD++ +TF +I +W ++ H++ +LVGNKSD+ +
Sbjct: 67 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 125
Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171
R VT +G+ALA+ G+ F+E+SA + NV F T+
Sbjct: 126 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 163
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 110/166 (66%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
D+LFK ++IG++ GKS LL +F +F +S TIGVEF ++ +++ GK VK QIWDTA
Sbjct: 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 67
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
GQERFR+VT +YYRGA GALLVYDI+ R+T++++ WL + + N+V IL GNK DL
Sbjct: 68 GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 127
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
REVT E A+ L F+ETSAL NV AF +I N
Sbjct: 128 DADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 173
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 167 bits (423), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 118/164 (71%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
DYLFK++LIGDS VGKS LL RFA D + + STIGV+F+ + ++++GK +K QIWDTA
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 65
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
GQERFR +TS+YYRGA G ++VYD++ +++F+++ +WL E+ ++ NV +LVG K DL
Sbjct: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDL 125
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
+ V K A++ G+ F+ETSA +++NV +F T+ EI
Sbjct: 126 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 167 bits (423), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 118/164 (71%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
D LFK++LIGDS VGKS LL RFA D + + STIGV+F+ + ++++GK +K QIWDTA
Sbjct: 4 DALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 63
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
GQERFR +TS+YYRGA G ++VYD++ +++F+++ +WL E+ ++ NV +LVGNK DL
Sbjct: 64 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 123
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
+ V K A++ G+ F+ETSA +++NV +F T+ EI
Sbjct: 124 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 167 bits (423), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 80/160 (50%), Positives = 115/160 (71%), Gaps = 1/160 (0%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
D + K++LIGDS VGKS LL RF D+F P+ +TIG++F+ + +DINGK+VK Q+WDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
GQERFR +T+AYYRGA G +LVYD++ +TF +I +W ++ H++ +LVGNKSD
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171
+ R VT +G+ALA+ G+ F+E+SA + NV F T+
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 166 bits (419), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 110/166 (66%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
D+LFK ++IG++ GKS LL +F +F +S TIGVEF ++ +++ GK VK QIWDTA
Sbjct: 9 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 68
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
GQERFR+VT +YYRGA GALLVYDI+ R+T++++ WL + + N+V IL GNK DL
Sbjct: 69 GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 128
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
REVT E A+ L F+ETSAL +V AF +I N
Sbjct: 129 DADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILN 174
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 164 bits (416), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 110/157 (70%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
D+LFK+VLIG++ VGK+ L+ RF + F P +TIGV+F + ++ING++VK QIWDTA
Sbjct: 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 83
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
GQERFR++T +YYR A +L YDI+ ++F + WL E+ ++ V+T+LVGNK DL
Sbjct: 84 GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL 143
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
+ REV+ + +EAQ ++++ETSA +S NV F
Sbjct: 144 AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF 180
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 163 bits (412), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 109/166 (65%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
D+LFK ++IG++ GKS LL +F +F +S TIGVEF ++ +++ GK VK QIWDTA
Sbjct: 6 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 65
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
G ERFR+VT +YYRGA GALLVYDI+ R+T++++ WL + + N+V IL GNK DL
Sbjct: 66 GLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 125
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
REVT E A+ L F+ETSAL +V AF +I N
Sbjct: 126 DADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILN 171
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 115/160 (71%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K++LIGDS VGKS LL RFA D + + STIGV+F+ + ++++GK +K QIWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135
FR +TS+YYRGA G ++VYD++ +++F+++ +WL E+ ++ NV +LVGNK DL +
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 136 EVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
V K A++ G+ F+ETSA +++NV +F T+ EI
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 161 bits (408), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 115/164 (70%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
DY+FK+++IG+S+VGK++ L R+A D F P ST+G++F+ + + N K +K QIWDTA
Sbjct: 3 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTA 62
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
GQER+R +T+AYYRGA+G +L+YDI+ ++F+++ W ++ T+S N +LVGNK D+
Sbjct: 63 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM 122
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
+D R V++ G+ LA+ G F E SA D+ NV F+ +V I
Sbjct: 123 EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 161 bits (407), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 115/167 (68%)
Query: 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIW 68
R DY+FK++LIG+S+VGK++ L R+A D F P ST+G++F+ + + + K +K QIW
Sbjct: 17 RGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIW 76
Query: 69 DTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNK 128
DTAGQER+R +T+AYYRGA+G LL+YDI+ +++F ++ W ++ T+S N ILVGNK
Sbjct: 77 DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNK 136
Query: 129 SDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
DL+D R V +G+ LA+ G F E SA ++ NV F+ +V I
Sbjct: 137 CDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 119/169 (70%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
DY+FK+++IG+S+VGK++ L R+A D F P ST+G++F+ + + + K VK QIWDTA
Sbjct: 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTA 80
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
GQER+R +T+AYYRGA+G +L+YDI+ ++F+++ W ++ T+S N ILVGNK D+
Sbjct: 81 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDM 140
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
++ R V T +G+ LAE G F E SA ++ +V AF+ +V I + +S
Sbjct: 141 EEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 107/168 (63%), Gaps = 4/168 (2%)
Query: 11 EDYL--FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIW 68
ED L K+++IG+S VGKS+LL RF D F P +TIGV+F+ + + ++G + K IW
Sbjct: 10 EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 69
Query: 69 DTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMN-VVTILVGN 127
DTAGQERFR +T +YYRGA G +LVYD++RR TF + WLNEL T+ N +V LVGN
Sbjct: 70 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGN 129
Query: 128 KSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
K D K+ REV EG A F+E SA V AF+ +V +I
Sbjct: 130 KID-KENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 154 bits (390), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 113/163 (69%), Gaps = 1/163 (0%)
Query: 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIW 68
R D+LFK+++IGDS VGKS+LL RFA + F + +TIGV+F+ + ++ING++VK QIW
Sbjct: 4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 63
Query: 69 DTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNK 128
DTAGQERFR +TS YYRG G ++VYD++ ++F ++ RWL+E++ + D +V ILVGNK
Sbjct: 64 DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNK 122
Query: 129 SDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171
+D + + V T + A G+ ETSA ++ NV F +
Sbjct: 123 NDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI 165
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 154 bits (389), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 109/165 (66%), Gaps = 1/165 (0%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNS-KSTIGVEFQTQKMDINGKEVKAQIWDT 70
D FKV+L+GDS VGK+ LL RF F + ST+G++F+ + +D++G +VK Q+WDT
Sbjct: 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDT 67
Query: 71 AGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSD 130
AGQERFR+VT AYYR A LL+YD++ + +FD+I WL E+H ++ +V +L+GNK D
Sbjct: 68 AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127
Query: 131 LKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
R V +G+ LA+ GL FMETSA NV AF + E+
Sbjct: 128 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 110/164 (67%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
DY FK+++IG+S+VGK++ L R+A D F P ST+G++F+ + + N K +K QIWDTA
Sbjct: 6 DYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTA 65
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
G ER+R +T+AYYRGA G +L YDI+ ++F+++ W ++ T+S N +LVGNK D
Sbjct: 66 GLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDX 125
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
+D R V++ G+ LA+ G F E SA D+ NV F+ +V I
Sbjct: 126 EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 153 bits (387), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 112/168 (66%), Gaps = 1/168 (0%)
Query: 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIW 68
R D+ +V++IG VGK++L+ RF D F KST+GV+F+ + +++ GK+++ QIW
Sbjct: 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIW 80
Query: 69 DTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNK 128
DTAGQERF ++TSAYYR A G +LVYDI++++TFD + +W+ + ++ + +LVGNK
Sbjct: 81 DTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNK 140
Query: 129 SDLKDAREVTTAEGKALAEA-QGLFFMETSALDSSNVTAAFQTVVTEI 175
D + RE+T +G+ A+ G+ F E SA D+ NV F +V +I
Sbjct: 141 LDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 105/163 (64%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+VL+GD GKS+L+ RF +D+F +STIG F +Q + +N VK +IWDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAR 135
+ ++ YYRGA A++V+D++ + +F+ +W+ EL + N+V L GNKSDL DAR
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 136 EVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNI 178
+VT + + A+ GLFFMETSA ++NV F + + +
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV 176
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 144 bits (363), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 100/161 (62%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+G+SAVGKS+L+ RF + +F+ +STIG F TQ + ++ VK +IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
R+ ++ YYRGA A++VYDI+ TF W+ EL + N+V L GNK+DL
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
R V E +A A+ L FMETSA + NV F + ++
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 144 bits (362), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 99/161 (61%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
KV L+GD+ VGKS+++ RF +D F N TIG F T+ + + K IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
RF ++ YYRG+ A++VYDI+++ +F ++ +W+ EL H N+V + GNK DL D
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
REV + K AE+ G +ETSA ++ N+ FQ + +I
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 143 bits (361), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 102/161 (63%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+G+SAVGKS+L+ RF + +F+ +STIG F TQ + ++ VK +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
R+ ++ YYRGA A++VYDI+ ++F W+ EL + N+V L GNK+DL +
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
R V E ++ A+ L FMETSA S NV F + ++
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 143 bits (361), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 102/156 (65%), Gaps = 3/156 (1%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+VL+G++AVGKS+++ RF ++F N + TIG F TQ++ IN VK +IWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSD-LKDA 134
F ++ YYR A AL+VYD+++ Q+F W+ ELH + +++ LVGNK D L++
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 135 --REVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
R+V EG+ LAE +GL F ETSA NV F
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 143 bits (361), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 102/161 (63%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+G+SAVGKS+L+ RF + +F+ +STIG F TQ + ++ VK +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
R+ ++ YYRGA A++VYDI+ ++F W+ EL + N+V L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
R V E ++ A+ L FMETSA S NV F + ++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 143 bits (361), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 95/154 (61%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
KV L+GD+ VGKS+++ RF D F PN TIG F T+ + + K IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
RFRA+ YYRG+ A++VYDI++ +TF ++ W+ EL H ++V + GNK DL D
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
REV + K A++ F+ETSA ++ N+ F
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELF 159
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 143 bits (361), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 103/161 (63%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+G+SAVGKS+L+ RF + +F+ +STIG F TQ + ++ VK +IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
R+ ++ YYRGA A++VYDI+ ++TF W+ EL + ++V L GNK+DL +
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
R V E +A A+ L FMETSA + NV F + ++
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 101/161 (62%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F TQ + ++ VK +IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
R+ ++ YYRGA A++VYDI+ ++F W+ EL + N+V L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
R V E ++ A+ L FMETSA S NV F + ++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 101/161 (62%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F TQ + ++ VK +IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
R+ ++ YYRGA A++VYDI+ ++F W+ EL + N+V L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
R V E ++ A+ L FMETSA S NV F + ++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 101/161 (62%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F TQ + ++ VK +IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
R+ ++ YYRGA A++VYDI+ ++F W+ EL + N+V L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
R V E ++ A+ L FMETSA S NV F + ++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 101/161 (62%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F TQ + ++ VK +IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
R+ ++ YYRGA A++VYDI+ ++F W+ EL + N+V L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
R V E ++ A+ L FMETSA S NV F + ++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 101/161 (62%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F TQ + ++ VK +IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
R+ ++ YYRGA A++VYDI+ ++F W+ EL + N+V L GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
R V E ++ A+ L FMETSA S NV F + ++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 101/161 (62%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+G+SAVGKS+L+ RF + +F+ +STIG F TQ + ++ VK +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
R+ ++ YYRGA A++VYDI+ ++F W+ EL + N+V L GNK+DL +
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
R V E ++ A+ L F ETSA S NV F + ++
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 99/161 (61%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+G+SAVGKS+L+ RF + +F+ +STIG F TQ + ++ VK +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
R+ ++ YYRGA A++VYDI+ TF W+ EL + N+V L GNK+DL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
R V E +A A+ L FMETSA + NV F + ++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 99/161 (61%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+G+SAVGKS+L+ RF + +F+ +STI F TQ + ++ VK +IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
R+ ++ YYRGA A++VYDI+ TF W+ EL + N+V L GNK+DL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
R V E +A A+ L FMETSA + NV F + ++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 141 bits (355), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 94/154 (61%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
KV L+GD+ VGKS+++ RF D F PN TIG F T+ + + K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
RFRA+ YYRG+ A++VYDI++ +TF ++ W+ EL H ++V + GNK DL D
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
REV + K A++ F+ETSA ++ N+ F
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELF 160
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 140 bits (354), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 101/161 (62%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+G+SAVGKS+L+ RF + +F+ +STIG F TQ + ++ VK +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
R+ ++ YYRGA A++VYDI+ ++F W+ EL + N+V L GNK+DL +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
R V E ++ A+ L FMETSA S NV F + ++
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 105/161 (65%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+V +G+ +VGK++L+ RF D F ++TIG++F ++ M + + V+ Q+WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
RFR++ +Y R + A++VYDI+ +F +W++++ T +V+ +LVGNK+DL D
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
R++T EG+ A+ + F+ETSA NV F+ V + +
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 104/157 (66%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+V +G+ +VGK++L+ RF D F ++TIG++F ++ M + + V+ Q+WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
RFR++ +Y R + A++VYDI+ +F +W++++ T +V+ +LVGNK+DL D
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171
R+V+T EG+ A+ + F+ETSA NV F+ V
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 104/161 (64%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+K+V +G+ AVGK++++ RF D F N +STIG++F ++ + ++ V+ Q+WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
RFR++ +Y R + A++VYDI+ RQ+F++ +W+ ++ +V+ LVGNK+DL D
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
R+VT EG A+ F ETSA N+ F+ +++
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 118/187 (63%), Gaps = 11/187 (5%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGK---------- 61
DYL K++ +GDS VGK+ L R+ ++F P +T+G++F+ +++ N +
Sbjct: 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAF 82
Query: 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NV 120
+V Q+WDTAGQERFR++T+A++R A+G LL++D++ +Q+F ++ W+++L ++ N
Sbjct: 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 142
Query: 121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
+L+GNK+DL D REV + + LA+ G+ + ETSA NV A +T++ I +
Sbjct: 143 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRME 202
Query: 181 RKVMISQ 187
+ V +Q
Sbjct: 203 QCVEKTQ 209
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 134 bits (336), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 89/115 (77%)
Query: 17 VVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERF 76
++LIGDS VGKS LL RFA D + + STIGV+F+ + ++++GK +K QIWDTAGQERF
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 77 RAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 131
R +TS+YYRGA G ++VYD++ +++F+++ +WL E+ ++ NV +LVGNK DL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 134 bits (336), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 109/167 (65%), Gaps = 6/167 (3%)
Query: 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
L KV+L+GD VGKS+L+ R+ ++F + TIGVEF + ++++G+ V QIWDTAGQ
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM----NVVTILVGNKS 129
ERF+++ + +YRGA LL + + RQ+F+++G W E ++D+ + +++GNK
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 130 DLKDAREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVVTEI 175
D K+ R+VTT E + G + ++ETSA D +NVT AF+ V ++
Sbjct: 127 D-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 134 bits (336), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 104/167 (62%), Gaps = 6/167 (3%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+K+VL GD+AVGKS+ L R ++EF N +T+GV+FQ + + ++G+ Q+WDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
RFR++ +Y+R A G LL+YD++ ++F +I W++ + + V +LVGNK+D++D
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 135 ------REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
+ V G+ LA G F ETSA D SN+ A + E+
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 133 bits (335), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 103/157 (65%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+V +G+ +VGK++L+ RF D F ++TIG++F ++ M + + ++ Q+WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
RFR++ +Y R + A++VYDI+ +F +W++++ T +V+ +LVGNK+DL D
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171
R+V+ EG+ A+ + F+ETSA NV F+ V
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 133 bits (334), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 103/157 (65%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+V +G+ +VGK++L+ RF D F ++TIG++F ++ M + + V+ Q+WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
RFR++ +Y R + A++VYDI+ +F +W++++ T +V+ +LVGNK+DL D
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171
R+V+ EG+ A+ + F+ETSA NV F+ V
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 158
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 108/167 (64%), Gaps = 6/167 (3%)
Query: 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
LFK++L+GD VGKS+L+ R+ ++F TIGVEF + ++++G V QIWDTAGQ
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM----NVVTILVGNKS 129
ERFR++ + +YRG+ LL + + Q+F ++ W E ++D+ + +++GNK+
Sbjct: 71 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 130 DLKDAREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVVTEI 175
D+K+ R+V+T E +A + G + + ETSA DS+NV AAF+ V I
Sbjct: 131 DIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 117/187 (62%), Gaps = 11/187 (5%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKM--DINGKE------- 62
DYL K++ +GDS VGK+ L R+ ++F P +T+G++F+ +++ D G +
Sbjct: 9 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 63 -VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NV 120
V Q+WDTAG ERFR++T+A++R A+G LL++D++ +Q+F ++ W+++L ++ N
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
+L+GNK+DL D REV + + LAE G+ + ETSA NV + +T++ I +
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRME 188
Query: 181 RKVMISQ 187
+ V +Q
Sbjct: 189 KCVEKTQ 195
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 117/187 (62%), Gaps = 11/187 (5%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKM--DINGKE------- 62
DYL K++ +GDS VGK+ L R+ ++F P +T+G++F+ +++ D G +
Sbjct: 9 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 63 -VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NV 120
V Q+WDTAG ERFR++T+A++R A+G LL++D++ +Q+F ++ W+++L ++ N
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
+L+GNK+DL D REV + + LAE G+ + ETSA NV + +T++ I +
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRME 188
Query: 181 RKVMISQ 187
+ V +Q
Sbjct: 189 KCVEKTQ 195
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 113/183 (61%), Gaps = 5/183 (2%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+V +G+ +VGK++L+ RF D F ++TIG++F ++ M + + ++ Q+WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
RFR++ +Y R + A++VYDI+ +F +W++++ T +V+ +LVGNK+DL D
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNI-----LSRKVMISQEL 189
R+V+ EG+ A+ + F+ETSA NV F+ V + + SR+ MI +L
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKL 193
Query: 190 KQK 192
++
Sbjct: 194 EKP 196
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 130 bits (327), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 102/157 (64%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+V +G+ +VGK++L+ RF D F ++TIG++F ++ M + + V+ Q+WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
RFR++ +Y R + A++VYDI+ +F +W++++ T +V+ +LVGNK+DL D
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTV 171
R+V+ EG+ A+ + F+ETSA NV F+ V
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 130 bits (326), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 113/183 (61%), Gaps = 5/183 (2%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+V +G+ +VGK++L+ RF D F ++TIG++F ++ M + + V+ Q+WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
RFR++ +Y R + A++VYDI+ +F +W++++ T +V+ +LVGNK+DL D
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNI-----LSRKVMISQEL 189
R+V+ EG+ A+ + F+ETSA NV F+ V + + SR+ MI +L
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKL 196
Query: 190 KQK 192
++
Sbjct: 197 EKP 199
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 92/156 (58%)
Query: 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72
Y FKVVL+G+ VGK++L+ R+ ++F +T+G F T+K++I GK V IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 73 QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132
QERF A+ YYR + GA+LVYDI+ +F + W+ EL + +VGNK DL+
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
R V+ E ++ AE+ G TSA + + F
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 113/183 (61%), Gaps = 11/183 (6%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDIN----------GK 61
DYL K + +GDS VGK+++L ++ +F +T+G++F+ +++ G+
Sbjct: 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQ 68
Query: 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHS-DMNV 120
+ Q+WDTAG ERFR++T+A++R A+G LL++D++ Q+F ++ W+++L H+ N
Sbjct: 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENP 128
Query: 121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
+L GNKSDL+D R V E + LAE G+ + ETSA + +N++ A + ++ I +
Sbjct: 129 DIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRME 188
Query: 181 RKV 183
R V
Sbjct: 189 RSV 191
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 111/182 (60%), Gaps = 11/182 (6%)
Query: 5 SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKM--DINGKE 62
S D DYL K++ +GDS VGK+ L R+ ++F P +T+G++F+ +++ D G +
Sbjct: 2 SXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 63 --------VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHT 114
V Q+WDTAG ERFR++T+A++R A G LL +D++ +Q+F ++ W ++L
Sbjct: 62 GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQA 121
Query: 115 HSDM-NVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173
++ N +L+GNK+DL D REV + + LAE G+ + ETSA NV + +T++
Sbjct: 122 NAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLD 181
Query: 174 EI 175
I
Sbjct: 182 LI 183
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 127 bits (319), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 5/167 (2%)
Query: 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
+FK+++IGDS VGK+ L RF F +++TIGV+F+ + +DI+G+ +K Q+WDTAGQ
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 74 ERFR-AVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMN-VVTILVGNKSDL 131
ERFR ++ YYR + VYD++ +F S+ W+ E H N + ILVGNK DL
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSAL---DSSNVTAAFQTVVTEI 175
+ A +V T + A+ + ETSA D+ +V A F T+ ++
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 127 bits (319), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 111/182 (60%), Gaps = 11/182 (6%)
Query: 5 SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKM--DINGKE 62
S D DYL K++ +GDS VGK+ L R+ ++F P +T+G++F+ +++ D G +
Sbjct: 2 SXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 63 --------VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHT 114
V Q+WDTAG ERFR++T+A++R A G LL +D++ +Q+F ++ W ++L
Sbjct: 62 GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQA 121
Query: 115 HSDM-NVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVT 173
++ N +L+GNK+DL D REV + + LAE G+ + ETSA NV + +T++
Sbjct: 122 NAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLD 181
Query: 174 EI 175
I
Sbjct: 182 LI 183
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 127 bits (318), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 105/167 (62%), Gaps = 6/167 (3%)
Query: 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
LFKV+L+GD VGKS+L+ R+ ++F TIGVEF + ++++G V QIWDTAGQ
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM----NVVTILVGNKS 129
ERFR++ + +YRG+ LL + + Q+F ++ W E ++D+ + +++GNK
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 130 DLKDAREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVVTEI 175
D+ + R+V+T E +A G + + ETSA D++NV AAF+ V +
Sbjct: 127 DISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 127 bits (318), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 105/167 (62%), Gaps = 6/167 (3%)
Query: 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
LFKV+L+GD VGKS+L+ R+ ++F TIGVEF + ++++G V QIWDTAGQ
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM----NVVTILVGNKS 129
ERFR++ + +YRG+ LL + + Q+F ++ W E ++D+ + +++GNK
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 130 DLKDAREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVVTEI 175
D+ + R+V+T E +A G + + ETSA D++NV AAF+ V +
Sbjct: 129 DISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 100/171 (58%), Gaps = 5/171 (2%)
Query: 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWD 69
A +FK+++IGDS VGK+ L RF F +++TIGV+F+ + +DI+G+ +K Q+WD
Sbjct: 25 ARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWD 84
Query: 70 TAGQERFR-AVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMN-VVTILVGN 127
TAGQERFR ++ YYR + VYD + +F S+ W+ E H N + ILVGN
Sbjct: 85 TAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGN 144
Query: 128 KSDLKDAREVTTAEGKALAEAQGLFFMETSAL---DSSNVTAAFQTVVTEI 175
K DL+ A +V T + A+ ETSA D+ +V A F T+ ++
Sbjct: 145 KCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 91/156 (58%)
Query: 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72
Y FKVVL+G+ VGK++L+ R+ ++F +T+ F T+K++I GK V IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 73 QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132
QERF A+ YYR + GA+LVYDI+ +F + W+ EL + +VGNK DL+
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
R V+ E ++ AE+ G TSA + + F
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 91/156 (58%)
Query: 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72
Y FKVVL+G+ VGK++L+ R+ ++F +T+ F T+K++I GK V IWDTAG
Sbjct: 19 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 73 QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLK 132
QERF A+ YYR + GA+LVYDI+ +F + W+ EL + +VGNK DL+
Sbjct: 79 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
R V+ E ++ AE+ G TSA + + F
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 174
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 115/196 (58%), Gaps = 15/196 (7%)
Query: 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
L KV+++GDS VGK++L+ ++ +F K+TIG +F T+++ ++ + V QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM----NVVTILVGNKS 129
ERF+++ A+YRGA +LV+D++ TF ++ W +E + N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 130 DLKDAREVTTAEGKALAEAQ-GLFFMETSALDSSNVTAAFQTVV---------TEIYNIL 179
DL++ R+V T +A ++ + + ETSA ++ NV AFQT+ E+YN
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEF 186
Query: 180 SRKVMISQELKQKDSS 195
+ + + + K S+
Sbjct: 187 PEPIKLDKNERAKASA 202
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 114/196 (58%), Gaps = 15/196 (7%)
Query: 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
L KV+++GDS VGK++L+ ++ +F K+TIG +F T+++ ++ + V QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM----NVVTILVGNKS 129
ERF+++ A+YRGA +LV+D++ TF ++ W +E + N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 130 DLKDAREVTTAEGKALAEAQ-GLFFMETSALDSSNVTAAFQTVV---------TEIYNIL 179
D ++ R+V T +A ++ + + ETSA ++ NV AFQT+ E+YN
Sbjct: 128 DFEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEF 186
Query: 180 SRKVMISQELKQKDSS 195
+ + + + K S+
Sbjct: 187 PEPIKLDKNDRAKASA 202
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 117 bits (292), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 104/163 (63%), Gaps = 6/163 (3%)
Query: 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
L KV+++GDS VGK++L+ ++ +F K+TIG +F T+++ ++ + V QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM----NVVTILVGNKS 129
ERF+++ A+YRGA +LV+D++ TF ++ W +E + N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 130 DLKDAREVTTAEGKALAEAQ-GLFFMETSALDSSNVTAAFQTV 171
DL++ R+V T +A ++ + + ETSA ++ NV AFQT+
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 117 bits (292), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 110/165 (66%), Gaps = 7/165 (4%)
Query: 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKA-QIWDTAG 72
+ KV+++GDS VGK++L+ R+ D++ K+TIG +F T+++ ++G +V Q+WDTAG
Sbjct: 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 73 QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVT----ILVGNK 128
QERF+++ A+YRGA +LVYD++ +F++I W +E H+++N +++GNK
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 129 SDLKDAREVTTAE-GKALAEAQG-LFFMETSALDSSNVTAAFQTV 171
D ++++++ + + + LA++ G + TSA ++ NV AF+ +
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 172
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 114/196 (58%), Gaps = 15/196 (7%)
Query: 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
L KV+++GDS VGK++L+ ++ +F K+TIG +F T+++ ++ + V QIWDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM----NVVTILVGNKS 129
ERF+++ A+YRGA +LV+D++ TF ++ W +E + N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 130 DLKDAREVTTAEGKALAEAQ-GLFFMETSALDSSNVTAAFQTVV---------TEIYNIL 179
DL++ R+V T +A ++ + + ETSA ++ NV AFQT+ E+YN
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEF 186
Query: 180 SRKVMISQELKQKDSS 195
+ + + + K S+
Sbjct: 187 PEPIKLDKNDRAKASA 202
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 95/155 (61%), Gaps = 1/155 (0%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K+V++G+ AVGKS+++ R+ + F + K TIGV+F +++ +N ++V+ +WDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
F A+T AYYRGA +LV+ + R++F++I W ++ ++ T LV NK DL D
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDD 124
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169
+ E + LA+ L F TS + NV+ F+
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFK 159
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 103/204 (50%), Gaps = 41/204 (20%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDI---------------- 58
+K VL+G+S+VGKS+++ R +D F+ N+ +TIG F T +++
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 59 ---------------------NGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDIS 97
N +K IWDTAGQER+ ++ YYRGA A++V+DIS
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 98 RRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETS 157
T D W+N+L S N + ILV NK D K+ +V E + A+ L F++TS
Sbjct: 128 NSNTLDRAKTWVNQLKISS--NYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTS 184
Query: 158 ALDSSNVTAAFQTVVTEIY-NILS 180
A +N+ F + EIY NI++
Sbjct: 185 AKTGTNIKNIFYMLAEEIYKNIIN 208
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 103 bits (258), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 95/163 (58%), Gaps = 2/163 (1%)
Query: 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
L KV+++G VGKS L +F DEF + + T ++ +K+ ++G+EV+ I DTAGQ
Sbjct: 14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 72
Query: 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNKSDLK 132
E + A+ Y+R G L V+ I+ ++F + + + L D NV +LVGNKSDL+
Sbjct: 73 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
D R+V+ E K AE + ++ETSA +NV F ++ EI
Sbjct: 133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 103 bits (257), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 95/163 (58%), Gaps = 2/163 (1%)
Query: 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
L KV+++G VGKS L +F DEF + + T ++ +K+ ++G+EV+ I DTAGQ
Sbjct: 18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 76
Query: 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNKSDLK 132
E + A+ Y+R G L V+ I+ ++F + + + L D NV +LVGNKSDL+
Sbjct: 77 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
D R+V+ E K AE + ++ETSA +NV F ++ EI
Sbjct: 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 103 bits (257), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 95/163 (58%), Gaps = 2/163 (1%)
Query: 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
L KV+++G VGKS L +F DEF + + T ++ +K+ ++G+EV+ I DTAGQ
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 64
Query: 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNKSDLK 132
E + A+ Y+R G L V+ I+ ++F + + + L D NV +LVGNKSDL+
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
D R+V+ E K AE + ++ETSA +NV F ++ EI
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 95/163 (58%), Gaps = 2/163 (1%)
Query: 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
L KV+++G VGKS L +F DEF + + T ++ +K+ ++G+EV+ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 62
Query: 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNKSDLK 132
E + A+ Y+R G L V+ I+ ++F + + + L D NV +LVGNKSDL+
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
D R+V+ E K A+ + ++ETSA +NV F ++ EI
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 2/163 (1%)
Query: 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
L KV+++G VGKS L +F DEF + + T ++ +K+ ++G+EV+ I DTAG
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGL 64
Query: 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILVGNKSDLK 132
E + A+ Y+R G L V+ I+ ++F + + + L D NV +LVGNKSDL+
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
D R+V+ E K AE + ++ETSA +NV F ++ EI
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 97/164 (59%), Gaps = 3/164 (1%)
Query: 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
L KV+++G VGKS L +F DEF + + T ++ +K+ ++G+EV+ I DTAG
Sbjct: 7 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGL 65
Query: 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILV-GNKSDL 131
E + A+ Y+R G LLV+ I+ ++F + + + L ++ + + +LV GNKSDL
Sbjct: 66 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
++ R+V E ++ AE G+ ++ETSA +NV F ++ EI
Sbjct: 126 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 97/164 (59%), Gaps = 3/164 (1%)
Query: 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
L KV+++G VGKS L +F DEF + + T ++ +K+ ++G+EV+ I DTAG
Sbjct: 3 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGL 61
Query: 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE-LHTHSDMNVVTILV-GNKSDL 131
E + A+ Y+R G LLV+ I+ ++F + + + L ++ + + +LV GNKSDL
Sbjct: 62 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
++ R+V E ++ AE G+ ++ETSA +NV F ++ EI
Sbjct: 122 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 84/162 (51%), Gaps = 4/162 (2%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGK-EVKAQIWDTAGQE 74
KVV++G VGK++L +F EF T VE K+ GK E + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPT--VENTYSKIVTLGKDEFHLHLVDTAGQD 83
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHT-HSDMNVVTILVGNKSDLKD 133
+ + ++ G G +LVY ++ +F I +LH H V +LVGNK+DL
Sbjct: 84 EYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143
Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
REV EGK LAE+ G FME+SA ++ F V+ EI
Sbjct: 144 EREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 4/168 (2%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGK-EVKAQIWDTAGQ 73
K+V++GD A GK++L FA++ F K TIG++F +++ + G V QIWD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRW---LNELHTHSDMNVVTILVGNKSD 130
+ Y GA G LLVYDI+ Q+F+++ W + ++ S+ + LVGNK D
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 131 LKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNI 178
L+ R + + + G SA +V FQ V EI I
Sbjct: 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 90.1 bits (222), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + ++ F TI ++ Q + I+G+ I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
+ A+ Y R G L V+ I+ ++F+ I + ++ D +V +LVGNKSDL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP- 122
Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
+R V T + + LA + G+ F+ETSA V AF T+V EI
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + ++ F TI ++ Q + I+G+ I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
+ A+ Y R G L V+ I+ ++F+ I + ++ D +V +LVGNK DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP- 122
Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
+R V T + + LA + G+ F+ETSA V AF T+V EI
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 3/154 (1%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF T+GVE N +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
+F + YY A A++++D++ R T+ ++ W +L + N+ +L GNK D+KD
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
+ A+ + L + + SA + N F
Sbjct: 130 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF +T+GVE N +K +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
+F + YY A A++++D++ R T+ ++ W H D+ N+ +L GNK
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW------HRDLVRVCENIPIVLCGNKV 117
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
D+KD + A+ + L + + SA + N F
Sbjct: 118 DIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 154
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 3/154 (1%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF +T+GVE N +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
+F + YY A A++++D++ R T+ ++ W +L + N+ +L GNK D+KD
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
+ A+ + L + + SA + N F
Sbjct: 130 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF +T+GVE N +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
+F + YY A A++++D++ R T+ ++ W H D+ N+ +L GNK
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW------HRDLVRVCENIPIVLCGNKV 124
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
D+KD + A+ + L + + SA + N F
Sbjct: 125 DIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF +T+GVE N +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
+F + YY A A++++D++ R T+ ++ W H D+ N+ +L GNK
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNW------HRDLVRVCENIPIVLCGNKV 124
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
D+KD + A+ + L + + SA + N F
Sbjct: 125 DIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 16/168 (9%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
KVVL+GD GK++LL FA D +P S + E + + GK V IWDTAGQ+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFA-DGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD 94
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKDA 134
+ + +Y A LL +D++ +FD+I RW E++ H V I+VG K+DL+
Sbjct: 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN-HFCKKVPIIVVGCKTDLRKD 153
Query: 135 R------------EVTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQ 169
+ VT G+ +A + G + ++E SA NV A FQ
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQ 201
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 13/159 (8%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF T+GVE N +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
+F + YY A A++++D++ R T+ ++ W H D+ N+ +L GNK
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW------HRDLVRVCENIPIVLCGNKV 124
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
D+KD + A+ + L + + SA + N F
Sbjct: 125 DIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF +T+GVE N +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
+F + YY A A++++D++ R T+ ++ W H D+ N+ +L GNK
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW------HRDLVRVCENIPIVLCGNKV 124
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
D+KD + A+ + L + + SA + N F
Sbjct: 125 DIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF +T+GVE N +K +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
+F + YY A A++++D++ R T+ ++ W H D+ N+ +L GNK
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW------HRDLVRVCENIPIVLCGNKV 129
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
D+KD + A+ + L + + SA + N F
Sbjct: 130 DIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 166
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 13/159 (8%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF +T+GVE N +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
+F + YY A A++ +D++ R T+ ++ W H D+ N+ +L GNK
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNW------HRDLVRVCENIPIVLCGNKV 124
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
D+KD + A+ + L + + SA + N F
Sbjct: 125 DIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + ++ F TI ++ Q + I+G+ I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
+ A+ Y R G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
AR V + + + LA + G+ ++ETSA V AF T+V EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF +T+GVE N +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
++ + YY A A++++D++ R T+ ++ W H D+ N+ +L GNK
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW------HRDLVRVCENIPIVLCGNKV 124
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
D+KD + A+ + L + + SA + N F
Sbjct: 125 DIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + ++ F TI ++ Q + I+G+ I DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
+ A+ Y R G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
AR V + + + LA + G+ ++ETSA V AF T+V EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 1/155 (0%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIG-VEFQTQKMDINGKEVKAQIWDTAGQ 73
+K+ LIGD VGK+ + R F N +T+G V +D G +K +WDTAGQ
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKD 133
E+ + YY GA GA+L +D++ R T ++ RW+ E ++ NK D+K+
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
++++ + + + + E SA + N F
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + ++ F TI ++ Q + I+G+ I DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
+ A+ Y R G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
AR V + + + LA + G+ ++ETSA V AF T+V EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF +TIGVE N E+K +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
+F + YY A A++++D++ R T+ ++ W H D+ N+ +L GNK
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNW------HRDLVRVCENIPIVLCGNKV 118
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
D+K+ + A+ + L + + SA + N F
Sbjct: 119 DVKERK--VKAKTITFHRKKNLQYYDISAKSNYNFEKPF 155
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 3/154 (1%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF +T+GVE N +K +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
+F + YY A A++++D++ R T+ ++ W +L + N+ +L GNK D+KD
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 131
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
+ A+ + L + + SA + N F
Sbjct: 132 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 163
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 3/154 (1%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF +T+GVE N +K +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA 134
+F + YY A A++++D++ R T+ ++ W +L + N+ +L GNK D+KD
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 125
Query: 135 REVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
+ A+ + L + + SA + N F
Sbjct: 126 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 157
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + ++ F TI ++ Q + I+G+ I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
+ A+ Y R G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 134 AREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
R V + + + LA + G+ ++ETSA V AF T+V EI
Sbjct: 122 GRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF +TIGVE N E+K +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
+F + YY A A++++D++ R T+ ++ W H D+ N+ +L GNK
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNW------HRDLVRVCENIPIVLCGNKV 119
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
D+K+ + A+ + L + + SA + N F
Sbjct: 120 DVKERK--VKAKTITFHRKKNLQYYDISAKSNYNFEKPF 156
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 13/159 (8%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF +T+GVE N +K +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
+F + YY A A++++D++ R T+ ++ W H D+ N+ +L GNK
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW------HRDLVRVCENIPIVLCGNKV 124
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
D+KD + A+ + L + + SA + N F
Sbjct: 125 DIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF +TIGVE N E+K +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
+F + YY A A++++D++ R T+ ++ W H D+ N+ +L GNK
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNW------HRDLVRVCENIPIVLCGNKV 126
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
D+K+ + A+ + L + + SA + N F
Sbjct: 127 DVKERK--VKAKTITFHRKKNLQYYDISAKSNYNFEKPF 163
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 90/163 (55%), Gaps = 8/163 (4%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+ ++G +VGKS+L +F +F ++ TI F T+ + +NG+E Q+ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSI----GRWLNELHTHSDMNVVTILVGNKSDL 131
+ Y G +LVY ++ ++F+ I G+ L+ + + + +LVGNK DL
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV---GKVQIPIMLVGNKKDL 121
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174
R ++ EGKALAE+ F+E+SA ++ F+ ++ E
Sbjct: 122 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 13/159 (8%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R E +T+GVE N +K +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-----NVVTILVGNKS 129
+F + YY A A++++D++ R T+ ++ W H D+ N+ +L GNK
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW------HRDLVRVCENIPIVLCGNKV 129
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAF 168
D+KD + A+ + L + + SA + N F
Sbjct: 130 DIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 166
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 89/163 (54%), Gaps = 8/163 (4%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+ ++G +VGKS+L +F +F + TI F T+ + +NG+E Q+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSI----GRWLNELHTHSDMNVVTILVGNKSDL 131
+ Y G +LVY ++ ++F+ I G+ L+ + + + +LVGNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV---GKVQIPIMLVGNKKDL 123
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174
R ++ EGKALAE+ F+E+SA ++ F+ ++ E
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 89/163 (54%), Gaps = 8/163 (4%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+ ++G +VGKS+L +F +F + TI F T+ + +NG+E Q+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSI----GRWLNELHTHSDMNVVTILVGNKSDL 131
+ Y G +LVY ++ ++F+ I G+ L+ + + + +LVGNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV---GKVQIPIMLVGNKKDL 123
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174
R ++ EGKALAE+ F+E+SA ++ F+ ++ E
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 89/163 (54%), Gaps = 8/163 (4%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+ ++G +VGKS+L +F +F + TI F T+ + +NG+E Q+ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSI----GRWLNELHTHSDMNVVTILVGNKSDL 131
+ Y G +LVY ++ ++F+ I G+ L+ + + + +LVGNK DL
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV---GKVQIPIMLVGNKKDL 118
Query: 132 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTE 174
R ++ EGKALAE+ F+E+SA ++ F+ ++ E
Sbjct: 119 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 161
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+V++GD A GK+ LL F++D+F P E ++++GK+V+ +WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQF-PAVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
+ Y L+ + I + ++I +W E+ H NV ILVGNK DL++
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 134 ---ARE--------VTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
ARE V AEG+ +A G F +ME SA V F+
Sbjct: 125 EHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+K+V++G VGKS L +F + F TI ++ Q ++++ ++ +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDAQQCMLEILDTAGTE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
+F A+ Y + G LVY I+ + TF+ + ++ D +V ILVGNK DL+D
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 134 AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAFQTVVTEI 175
R V +G+ LA + F+E+SA NV F +V +I
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+K+V++G VGKS L +F + F TI ++ Q ++++ ++ +I DTAG E
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDAQQCMLEILDTAGTE 64
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
+F A+ Y + G LVY I+ + TF+ + ++ D +V ILVGNK DL+D
Sbjct: 65 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 134 AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAFQTVVTEI 175
R V +G+ LA + F+E+SA NV F +V +I
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+K+V++G VGKS L +F + F TI ++ Q ++++ ++ +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDCQQCMLEILDTAGTE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
+F A+ Y + G LVY I+ + TF+ + ++ D +V ILVGNK DL+D
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 134 AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAFQTVVTEI 175
R V +G+ LA + F+E+SA NV F +V +I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+K+V++G VGKS L +F + F TI ++ Q ++++ ++ +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQ-VEVDCQQCMLEILDTAGTE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
+F A+ Y + G LVY I+ + TF+ + ++ D +V ILVGNK DL+D
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 134 AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAFQTVVTEI 175
R V +G+ LA + F+E+SA NV F +V +I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 14/171 (8%)
Query: 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
K V +GD AVGK+ +L + + F + T+ F + ++G V +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
Query: 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLK 132
E + + YRGA LL + + + ++++I +WL EL H + +LVG K DL+
Sbjct: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELK-HYAPGIPIVLVGTKLDLR 123
Query: 133 D----------AREVTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVV 172
D A +TTA+G+ L + G + ++E S+ NV A F T +
Sbjct: 124 DDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAI 174
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+V++GD A GK+ LL F++D+F P E ++++GK+V+ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 67
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
+ + Y L+ + I + ++I +W E+ H NV ILVGNK DL++
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
V EG+ +A G F +ME SA V F+
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+V++GD A GK+ LL F++D+F P E ++++GK+V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
+ + Y L+ + I + ++I +W E+ H NV ILVGNK DL++
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
V EG+ +A G F +ME SA V F+
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+V++GD A GK+ LL F++D+F P E ++++GK+V+ +WDTAGQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 69
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
+ + Y L+ + I + ++I +W E+ H NV ILVGNK DL++
Sbjct: 70 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 128
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
V EG+ +A G F +ME SA V F+
Sbjct: 129 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 176
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+V++GD A GK+ LL F++D+F P E ++++GK+V+ +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 66
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
+ + Y L+ + I + ++I +W E+ H NV ILVGNK DL++
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
V EG+ +A G F +ME SA V F+
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+V++GD A GK+ LL F++D+F P E ++++GK+V+ +WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 68
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
+ + Y L+ + I + ++I +W E+ H NV ILVGNK DL++
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
V EG+ +A G F +ME SA V F+
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+V++GD A GK+ LL F++D+F P E ++++GK+V+ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 67
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
+ + Y L+ + I + ++I +W E+ H NV ILVGNK DL++
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
V EG+ +A G F +ME SA V F+
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+V++GD A GK+ LL F++D+F P E ++++GK+V+ +WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 66
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
+ + Y L+ + I + ++I +W E+ H NV ILVGNK DL++
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
V EG+ +A G F +ME SA V F+
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+V++GD A GK+ LL F++D+F P E ++++GK+V+ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 67
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
+ + Y L+ + I + ++I +W E+ H NV ILVGNK DL++
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
V EG+ +A G F +ME SA V F+
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 2/150 (1%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L +F + F + TI + T+ ++G + I DTAGQE F A+ Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G LLV+ I+ RQ+F+ +G+ ++ D + +LVGNK+DL+ R+V +E A
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
+ + + E SA NV AF+ +V +
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 81/162 (50%), Gaps = 4/162 (2%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+ + G + VGKS L+ RF F T+ ++ Q I+ + V +I DTAGQE
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQED 88
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNEL-HTHSDMNVVTILVGNKSDLKDA 134
+ R G +LVYDI+ R +F+ + N L NV ILVGNK+DL +
Sbjct: 89 -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS 147
Query: 135 REVTTAEGKALAEAQGLFFMETSAL-DSSNVTAAFQTVVTEI 175
R+V+T EG+ LA F E SA N+T F + E+
Sbjct: 148 RQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+V++GD A GK+ LL F++DEF P E ++++GK+V+ +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 85
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
+ + Y L+ + + + ++I +W+ E+ H NV ILV NK DL+
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDLRSD 144
Query: 134 -------AR----EVTTAEGKALA-EAQGLFFMETSALDSSNVTAAFQT 170
AR V T +G+A+A Q ++E SA V F+T
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFET 193
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 16/173 (9%)
Query: 5 SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVK 64
S D ++ K+V++GDS GK+ LL FA+D F N T+ E T +I+ + ++
Sbjct: 19 SHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIE 77
Query: 65 AQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTI 123
+WDT+G + V Y + L+ +DISR +T DS+ +W E+ N +
Sbjct: 78 LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKML 136
Query: 124 LVGNKSDLK----------DARE--VTTAEGKALAEAQG-LFFMETSALDSSN 163
LVG KSDL+ + R+ V+ +G +A+ G ++E SAL S N
Sbjct: 137 LVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 2/150 (1%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L +F + F + TI + T++ I+ + + I DTAGQE F A+ Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSY-TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDMN-VVTILVGNKSDLKDAREVTTAEGKAL 145
G LLV+ ++ R +F+ I ++ ++ D + IL+GNK+DL R+VT EG+ L
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + +ME SA NV AF +V I
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVRVI 166
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAGQE + A+ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I + ++ D +V +LVGNKSDL +R V T + + L
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP-SRTVDTKQAQDL 134
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ F+ETSA V AF T+V EI
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAGQE + A+ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I + ++ D +V +LVGNKSDL +R V T + + L
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP-SRTVDTKQAQDL 134
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ F+ETSA V AF T+V EI
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 87/170 (51%), Gaps = 16/170 (9%)
Query: 8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQI 67
D ++ K+V++GDS GK+ LL FA+D F N T+ E T +I+ + ++ +
Sbjct: 17 DPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSL 75
Query: 68 WDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVG 126
WDT+G + V Y + L+ +DISR +T DS+ +W E+ N +LVG
Sbjct: 76 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVG 134
Query: 127 NKSDLK----------DARE--VTTAEGKALAEAQG-LFFMETSALDSSN 163
KSDL+ + R+ V+ +G +A+ G ++E SAL S N
Sbjct: 135 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
K V +GD AVGK+ +L + + F + T+ F + ++G V +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQ 64
Query: 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLK 132
E + + YRGA +L + + + +++++ +W+ EL H V ILVG K DL+
Sbjct: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 123
Query: 133 D----------AREVTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVV 172
D A +TT +G+ L + G ++E S+ NV A F +
Sbjct: 124 DDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAI 174
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 16/162 (9%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+V++GDS GK+ LL FA+D F N T+ E T +I+ + ++ +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLK-- 132
+ V Y + L+ +DISR +T DS+ +W E+ N +LVG KSDL+
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTD 126
Query: 133 --------DARE--VTTAEGKALAEAQG-LFFMETSALDSSN 163
+ R+ V+ +G +A+ G ++E SAL S N
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNKSDL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 14/171 (8%)
Query: 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
K V +GD AVGK+ LL + + F + T+ F + +NG V +WDTAGQ
Sbjct: 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQ 66
Query: 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLK 132
E + + YRGA +L + + + +++++ +W+ EL H V +LVG K DL+
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLVGTKLDLR 125
Query: 133 D----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVV 172
D A +TT +G+ L + G ++E S+ NV F +
Sbjct: 126 DDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAI 176
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMISQE 188
A + G+ ++ETSA V AF T+V EI RK+ E
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDE 176
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 92/179 (51%), Gaps = 12/179 (6%)
Query: 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
K V +GD AVGK+ +L + ++F + T+ F + + ++G+ V +WDTAGQ
Sbjct: 9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQ 67
Query: 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLK 132
E + + YRGA +L + + + +++++ +W+ EL + NV +LVG K DL+
Sbjct: 68 EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLR 126
Query: 133 DARE--------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEIYNILSRK 182
D + +T+ +G+ L + G ++E S+ NV A F T + + RK
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 185
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+V++GD A GK+ LL ++D+F P E ++++GK+V+ +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 63
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
+ + Y L+ + I + ++I +W E+ H NV ILVGNK DL++
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
V EG+ +A G F +ME SA V F+
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 170
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+V++GD A GK+ LL ++D+F P E ++++GK+V+ +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 63
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
+ + Y L+ + I + ++I +W E+ H NV ILVGNK DL++
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
V EG+ +A G F +ME SA V F+
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 170
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+V++GD A GK+ LL ++D+F P E ++++GK+V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
+ + Y L+ + I + ++I +W E+ H NV ILVGNK DL++
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
V EG+ +A G F +ME SA V F+
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNKSDL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+V++GD A GK+ LL ++D+F P E ++++GK+V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
+ + Y L+ + I + ++I +W E+ H NV ILVGNK DL++
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
V EG+ +A G F +ME SA V F+
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+V++GD A GK+ LL ++D+F P E ++++GK+V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
+ + Y L+ + I + ++I +W E+ H NV ILVGNK DL++
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
V EG+ +A G F +ME SA V F+
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 3/158 (1%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 183
A + G+ ++ETSA V AF T+V EI RK+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKL 171
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 3/158 (1%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 183
A + G+ ++ETSA V AF T+V EI RK+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKL 171
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+V++GD A GK+ LL F++D+F P E ++++GK+V+ +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 85
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
+ + Y L+ + I + ++I +W E+ H NV ILVGNK DL+
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKKDLRQD 144
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
V + EG+ +A F ++E SA V F+
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAGQE + A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 138
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAGQE + A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 138
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAG E + A+ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I + ++ D +V +LVGNK DL +R V T + + L
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDL 151
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ F+ETSA V AF T+V EI
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 7/172 (4%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
++V + G VGKS+L+ RF + F + T+ ++ Q + + QI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNEL-HTHSDMNVVTI-LVGNKSDLK 132
+F A+ +LVY I+ RQ+ + + ++ D+ + I LVGNK D
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVM 184
+REV ++E +ALA FMETSA + NV FQ E+ N+ R+ +
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ----ELLNLEKRRTV 170
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+V++GD A GK+ LL F++D+F P E ++++GK+V+ +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 85
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
+ + Y L+ + I + ++I +W E+ H NV ILVGNK DL+
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 144
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
V + EG+ +A F ++E SA V F+
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAGQE + A+ Y R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 82 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 140
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 141 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 170
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 3/158 (1%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAGQE + A+ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F I + ++ D +V +LVGNK DL R V T + L
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP-TRTVDTKQAHEL 151
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 183
A++ G+ F+ETSA V AF T+V EI +K+
Sbjct: 152 AKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKL 189
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 24/192 (12%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + + F T+ + M ++GK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y +L+ + + +F+++ +W E+ H N ILVG K DL+D
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEIYNILS 180
++ +T +G A+A+ G + ++E SAL + F +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI-------- 173
Query: 181 RKVMISQELKQK 192
R V+ +K++
Sbjct: 174 RAVLCPPPVKKR 185
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGN+ DL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 84/159 (52%), Gaps = 4/159 (2%)
Query: 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
L++VVL+GD VGK++L + FA + + +G + + + ++G++ + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQ-ERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 74 ERFRAVTS--AYYRGAVGALLVYDISRRQTFDSIGRWLNELH-THSDMNVVTILVGNKSD 130
E+ S + +G ++VY I+ R +F+S +L TH +V ILVGNK+D
Sbjct: 63 EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122
Query: 131 LKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQ 169
L REV+ EG+A A F+ETSA NV F+
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F +I ++ Q + I+G+ I DTAGQE + A+ Y R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 81 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 139
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 140 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F +I ++ Q + I+G+ I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 24/191 (12%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + + F T+ + M ++GK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y +L+ + + +F+++ +W E+ H N ILVG K DL+D
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEIYNILS 180
++ +T +G A+A+ G + ++E SAL + F +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI-------- 173
Query: 181 RKVMISQELKQ 191
R V+ +K+
Sbjct: 174 RAVLCPPPVKK 184
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
K+ L + ++ F TI ++ Q + I+G+ I DTAGQE + A+ Y R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 24/191 (12%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + + F T+ + M ++GK V +WDTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 66
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y +L+ + + +F+++ +W E+ H N ILVG K DL+D
Sbjct: 67 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 125
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEIYNILS 180
++ +T +G A+A+ G + ++E SAL + F +
Sbjct: 126 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI-------- 177
Query: 181 RKVMISQELKQ 191
R V+ +K+
Sbjct: 178 RAVLCPPPVKK 188
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 24/191 (12%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + + F T+ + M ++GK V +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y +L+ + + +F+++ +W E+ H N ILVG K DL+D
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 123
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEIYNILS 180
++ +T +G A+A+ G + ++E SAL + F +
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI-------- 175
Query: 181 RKVMISQELKQ 191
R V+ +K+
Sbjct: 176 RAVLCPPPVKK 186
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K+V++GD AVGK+ LL F++ E P + E + M +E +WDTAGQE
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQE 82
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y + LL + ++ R +FD+I +W E+ + D T+LVG K DL+
Sbjct: 83 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVGLKVDLRK 141
Query: 134 --AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVVTEIYN 177
+ +VT EG L + G ++E S++ + F+ V I++
Sbjct: 142 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFS 188
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K+V++GD AVGK+ LL F++ E P + E + M +E +WDTAGQE
Sbjct: 23 LKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQE 81
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y + LL + ++ R +FD+I +W E+ + D T+LVG K DL+
Sbjct: 82 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVGLKVDLRK 140
Query: 134 --AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQTVVTEIYN 177
+ +VT EG L + G ++E S++ + F+ V I++
Sbjct: 141 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFS 187
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DT GQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAG+E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DT GQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAGQE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTE 174
A + G+ ++ETSA V AF T+V E
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 24/192 (12%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + + F T+ + M ++GK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W E+ H N ILVG K DL+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEIYNILS 180
++ +T +G A+A+ G + ++E SAL + F +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI-------- 173
Query: 181 RKVMISQELKQK 192
R V+ +K++
Sbjct: 174 RAVLCPPPVKKR 185
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+V++GD A GK+ LL ++D+F P E ++++GK+V+ +WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 68
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
+ + Y L+ + I + ++I +W E+ H NV ILVGNK DL++
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
V EG+ +A G F +ME SA V F+
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAGQE A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 24/191 (12%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + + F T+ + M ++GK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W E+ H N ILVG K DL+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEIYNILS 180
++ +T +G A+A+ G + ++E SAL + F +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI-------- 173
Query: 181 RKVMISQELKQ 191
R V+ +K+
Sbjct: 174 RAVLCPPPVKK 184
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTA QE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTA QE + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAG E + A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 138
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + + F T+ + M ++GK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W E+ H N ILVG K DL+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVV 172
++ +T +G A+A+ G + ++E SAL + F +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + + F T+ + M ++GK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W E+ H N ILVG K DL+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVV 172
++ +T +G A+A+ G + ++E SAL + F +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + + F T+ + M ++GK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W E+ H N ILVG K DL+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVV 172
++ +T +G A+A+ G + ++E SAL + F +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + + F T+ + M ++GK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W E+ H N ILVG K DL+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVV 172
++ +T +G A+A+ G + ++E SAL + F +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + + F T+ + M ++GK V +WDTAGQE
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 81
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W E+ H N ILVG K DL+D
Sbjct: 82 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 140
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVV 172
++ +T +G A+A+ G + ++E SAL + F +
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 192
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 16/175 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + + F T+ + M ++GK V +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 89
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W E+ H N ILVG K DL+D
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 148
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEI 175
++ +T +G A+A+ G + ++E SAL + F + +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + + F T+ + M ++GK V +WDTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 72
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W E+ H N ILVG K DL+D
Sbjct: 73 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 131
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVV 172
++ +T +G A+A+ G + ++E SAL + F +
Sbjct: 132 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 183
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 16/175 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + + F T+ + M ++GK V +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 69
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W E+ H N ILVG K DL+D
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 128
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEI 175
++ +T +G A+A+ G + ++E SAL + F + +
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 183
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L + ++ F TI ++ Q + I+G+ I DTAG E + A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L V+ I+ ++F+ I ++ ++ D +V +LVGNK DL AR V + + + L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
A + G+ ++ETSA V AF T+V EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+V++GD A GK+ LL ++D+F P E ++++GK+V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQF-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 65
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
+ + Y L+ + I + ++I +W E+ H NV ILVGNK DL+
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 124
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
V + EG+ +A F ++E SA V F+
Sbjct: 125 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 172
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 3/148 (2%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L +F + F P+ TI + + +I+ + + DTAGQE F A+ Y R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L+VY ++ + +F+ + R+ + D + ILV NK DL R+VT +GK +
Sbjct: 85 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 144
Query: 146 AEAQGLFFMETSALDSS-NVTAAFQTVV 172
A + ++ETSA D NV F +V
Sbjct: 145 ATKYNIPYIETSAKDPPLNVDKTFHDLV 172
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 24/192 (12%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + + F T+ + M ++ K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +++++ +W E+ H + ILVG K DL+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPI-ILVGTKLDLRD 121
Query: 134 ARE------------VTTAEGKALA-EAQGLFFMETSALDSSNVTAAFQTVVTEIYNILS 180
++ +T +G ALA E + ++E SAL + F +
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI-------- 173
Query: 181 RKVMISQELKQK 192
R V+ Q +Q+
Sbjct: 174 RAVLCPQPTRQQ 185
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 24/192 (12%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + + F T+ + M ++GK V +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W E+ H N ILVG K DL+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEIYNILS 180
++ +T +G A+A+ G + ++E SAL + F +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI-------- 173
Query: 181 RKVMISQELKQK 192
R V+ +K++
Sbjct: 174 RAVLCPPPVKKR 185
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 16/179 (8%)
Query: 8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQI 67
D A L K V++GD AVGK+ LL + + F T+ + M ++GK V +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGL 207
Query: 68 WDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVG 126
WDTAG E + + Y L+ + + +F + +W E+ H N ILVG
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVG 266
Query: 127 NKSDLKDARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVV 172
K DL+D ++ +T +G A+A+ G + ++E SAL + F +
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 24/192 (12%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + + F T+ + M ++GK V +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W E+ H N ILVG K DL+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEIYNILS 180
++ +T +G A+A+ G + ++E SAL + F +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI-------- 173
Query: 181 RKVMISQELKQK 192
R V+ +K++
Sbjct: 174 RAVLCPPPVKKR 185
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K VL+GD AVGK++L+ + + YP + + + ++G+ V+ Q+ DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
F + Y LL + + +F ++ +W+ E+ H + ILVG +SDL++
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPI-ILVGTQSDLRED 139
Query: 134 -----------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAFQTVV 172
+ V K LA E + ++E SAL N+ F +
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAI 190
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 16/179 (8%)
Query: 8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQI 67
D A L K V++GD AVGK+ LL + + F T+ + M ++GK V +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGL 207
Query: 68 WDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVG 126
WDTAG E + + Y L+ + + +F + +W E+ H N ILVG
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVG 266
Query: 127 NKSDLKDARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVV 172
K DL+D ++ +T +G A+A+ G + ++E SAL + F +
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 16/179 (8%)
Query: 8 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQI 67
D A L K V++GD AVGK+ LL + + F T+ + M ++GK V +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGL 207
Query: 68 WDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVG 126
WDTAG E + + Y L+ + + +F + +W E+ H N ILVG
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVG 266
Query: 127 NKSDLKDARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVV 172
K DL+D ++ +T +G A+A+ G + ++E SAL + F +
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 2/150 (1%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L +F F TI +F ++++++ +I DTAG E+F ++ Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 87 AVGALLVYDISRRQTFDSIGRWLNEL-HTHSDMNVVTILVGNKSDLKDAREVTTAEGKAL 145
G +LVY + +Q+F I +++ V ILVGNK DL+ REV+++EG+AL
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
AE G FMETSA + V F +V ++
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 3/151 (1%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L +F + F P TI + + +I+ + + DTAGQE F A+ Y R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L+VY ++ + +F+ + R+ + D + ILV NK DL R+VT +GK +
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 146 AEAQGLFFMETSALDSS-NVTAAFQTVVTEI 175
A + ++ETSA D NV F +V I
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 16/175 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + + T+ + M ++GK V +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 89
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W E+ H N ILVG K DL+D
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 148
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEI 175
++ +T +G A+A+ G + ++E SAL + F + +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 16/175 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + + F T+ + M ++GK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W E+ H + +LVG K DL+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI-LLVGTKLDLRD 121
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEI 175
++ +T +G A+A G + ++E SAL + F + +
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 16/175 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + + F T+ + M ++GK V +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 63
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W E+ H + +LVG K DL+D
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI-LLVGTKLDLRD 122
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEI 175
++ +T +G A+A G + ++E SAL + F + +
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 16/175 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + + F T+ + M ++GK V +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 63
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W E+ H + +LVG K DL+D
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI-LLVGTKLDLRD 122
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEI 175
++ +T +G A+A G + ++E SAL + F + +
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + + F T+ + M ++GK V +WDTAG E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 65
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W E+ H N ILVG K DL+D
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 124
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVV 172
++ +T +G A+A+ G + ++E SAL + F +
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 176
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 16/175 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + + F T+ + M ++GK V +WDTAG E
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 89
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W E+ H N ILVG K DL+D
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 148
Query: 134 ARE------------VTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEI 175
++ +T +G A+A+ G + ++E SAL + F + +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 35/191 (18%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + + F T+ + M ++GK V +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 75 RFRAVTSAYYRGAVGALLVYDISRR-------------------QTFDSI-GRWLNELHT 114
+ + Y VG DI+ R +F+++ +W E+
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 115 HSDMNVVTILVGNKSDLKDARE------------VTTAEGKALAEAQG-LFFMETSALDS 161
H N ILVG K DL+D ++ +T +G A+A+ G + ++E SAL
Sbjct: 125 HCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 162 SNVTAAFQTVV 172
+ F +
Sbjct: 184 RGLKTVFDEAI 194
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 17/170 (10%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+VL+GD GK+ +L A+D YP + E T ++ + V+ +WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKD-CYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 71
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDS-IGRWLNELHTHSDMNVVTILVGNKSDLK-- 132
+ V Y + LL +DISR +T DS + +W E+ + V +L+G K+DL+
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDLRTD 130
Query: 133 ----------DAREVTTAEGKALAEAQGL-FFMETSALDS-SNVTAAFQT 170
++ +G A+A+ G ++E SA S ++ + F+T
Sbjct: 131 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRT 180
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 17/170 (10%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+VL+GD GK+ +L A+D YP + E T ++ + V+ +WDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKD-CYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 70
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDS-IGRWLNELHTHSDMNVVTILVGNKSDLK-- 132
+ V Y + LL +DISR +T DS + +W E+ + V +L+G K+DL+
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDLRTD 129
Query: 133 ----------DAREVTTAEGKALAEAQGL-FFMETSALDS-SNVTAAFQT 170
++ +G A+A+ G ++E SA S ++ + F+T
Sbjct: 130 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRT 179
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 9/182 (4%)
Query: 16 KVVLIGDSAVGKSNLLARFAR--DEFYPNSKSTIGVEFQTQKMDINGKEVKAQIW--DTA 71
KV ++G++ VGKS L++ F +F + T GVE + I V +++ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRW---LNELHTHSDMNVVTILVGNK 128
G + ++ S Y+ G A+LV+D+S ++F+S W L + + +LV NK
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 129 SDLKDAR-EVTTAEGKALAEAQGLFFMETSA-LDSSNVTAAFQTVVTEIYNILSRKVMIS 186
+DL R +V + A L F + SA + A F ++ T Y KV
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYEDKVAAF 201
Query: 187 QE 188
Q+
Sbjct: 202 QD 203
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 17/170 (10%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+VL+GD GK+ +L A+D YP + E T ++ + V+ +WDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKD-CYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 87
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDS-IGRWLNELHTHSDMNVVTILVGNKSDLK-- 132
+ V Y + LL +DISR +T DS + +W E+ + V +L+G K+DL+
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDLRTD 146
Query: 133 ----------DAREVTTAEGKALAEAQGL-FFMETSALDS-SNVTAAFQT 170
++ +G A+A+ G ++E SA S ++ + F+T
Sbjct: 147 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRT 196
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 16/175 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + + F T+ + M ++ K V +WDTAGQE
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 68
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +++++ +W E+ H + ILVG K DL+D
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPI-ILVGTKLDLRD 127
Query: 134 ARE------------VTTAEGKALA-EAQGLFFMETSALDSSNVTAAFQTVVTEI 175
++ +T +G ALA E + ++E SAL + F + +
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 182
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 3/167 (1%)
Query: 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWD 69
+++ ++KV+L+G VGKS L F E P +++ G + + + ++G+E ++D
Sbjct: 3 SDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYD 60
Query: 70 TAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMN-VVTILVGNK 128
Q+ R + ++VY ++ + +F+ +L + V ILVGNK
Sbjct: 61 IWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNK 120
Query: 129 SDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
SDL +REV+ EG+A A F+ETSA NV A F+ VV +I
Sbjct: 121 SDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 16/175 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + + F T+ + M ++ K V +WDTAGQE
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 69
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSI-GRWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +++++ +W E+ H + ILVG K DL+D
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPI-ILVGTKLDLRD 128
Query: 134 ARE------------VTTAEGKALA-EAQGLFFMETSALDSSNVTAAFQTVVTEI 175
++ +T +G ALA E + ++E SAL + F + +
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 183
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 3/167 (1%)
Query: 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWD 69
+++ ++KV+L+G VGKS L F E P +++ G + + + ++G+E ++D
Sbjct: 3 SDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYD 60
Query: 70 TAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMN-VVTILVGNK 128
Q+ R + ++VY ++ + +F+ +L + V ILVGNK
Sbjct: 61 IWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNK 120
Query: 129 SDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
SDL +REV+ EG+A A F+ETSA NV A F+ VV +I
Sbjct: 121 SDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
Query: 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
++KV+L+G VGKS L F E P +++ G + + + ++G+E ++D Q
Sbjct: 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 59
Query: 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMN-VVTILVGNKSDLK 132
+ R + ++VY ++ + +F+ +L + V ILVGNKSDL
Sbjct: 60 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119
Query: 133 DAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
+REV+ EG+A A F+ETSA NV A F+ VV +I
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 3/151 (1%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L +F + F + TI + + +I+ + + DTAGQE F A+ Y R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L+VY ++ + +F+ + R+ + D + ILV NK DL R+VT +GK +
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 146 AEAQGLFFMETSALDSS-NVTAAFQTVVTEI 175
A + ++ETSA D NV F +V I
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 3/151 (1%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L +F + F TI ++ + +I+ + + DTAGQE F A+ Y R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSYR-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 87 AVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKDAREVTTAEGKAL 145
G L+VY ++ + +F+ + R+ + D + ILV NK DL R+VT +GK +
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 146 AEAQGLFFMETSALDSS-NVTAAFQTVVTEI 175
A + ++ETSA D NV F +V I
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 16/176 (9%)
Query: 14 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQ 73
+ K V++GD AVGK+ LL +A D F P + + + GK+ ++DTAGQ
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 74 ERFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLK 132
E + + Y L+ + + +F ++ W+ EL ++ NV +L+G + DL+
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLR 135
Query: 133 D------------AREVTTAEGKALAEAQG-LFFMETSALDSSNVTAAFQTVVTEI 175
D + + +G+ LA+ G ++E SAL + F + I
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 19/172 (11%)
Query: 15 FKVVLIGDSAVGKSNLLARFA--RDEFYPNSKSTIGVEFQTQKMDINGKE---VKAQIWD 69
++VVLIG+ VGKS L FA D + + +G + + + ++G+ + +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE-VLGEDTYERTLMVDGESATIILLDMWE 65
Query: 70 TAGQERF-----RAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELH-THSDMNVVTI 123
G+ + V AY L+VY I+ R +F+ +L ++ I
Sbjct: 66 NKGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 124 LVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
LVGNKSDL REV+ +EG+A A F+ETSA NV F+ +V ++
Sbjct: 119 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 27/190 (14%)
Query: 15 FKVVLIGDSAVGKSNLLARFA--RDEFYPNSKSTIGVEFQTQKMDINGKE---VKAQIWD 69
++VVLIG+ VGKS L FA D + + +G + + + ++G+ + +W+
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE-VLGEDTYERTLMVDGESATIILLDMWE 96
Query: 70 TAGQERF-----RAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELH-THSDMNVVTI 123
G+ + V AY L+VY I+ R +F+ +L ++ I
Sbjct: 97 NKGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPII 149
Query: 124 LVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKV 183
LVGNKSDL REV+ +EG+A A F+ETSA NV F+ +V R+V
Sbjct: 150 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIV--------RQV 201
Query: 184 MISQELKQKD 193
+ ++ K+K+
Sbjct: 202 RLRRDSKEKN 211
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 17/171 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFAR-DEFYPNSKSTIGVEFQTQKMDINGKE---VKAQIWDT 70
++VVLIG+ VGKS L FA + + +G + + + ++G+ + +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 71 AGQERF-----RAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELH-THSDMNVVTIL 124
G+ + V AY L+VY I+ R +F+ +L ++ IL
Sbjct: 67 KGENEWLHDHXMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 125 VGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
VGNKSDL REV+ +EG+A A F+ETSA NV F+ +V ++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 17/171 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFAR-DEFYPNSKSTIGVEFQTQKMDINGKE---VKAQIWDT 70
++VVLIG+ VGKS L FA + + +G + + + ++G+ + +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 71 AGQERF-----RAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELH-THSDMNVVTIL 124
G+ + V AY L+VY I+ R +F+ +L ++ IL
Sbjct: 67 KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 125 VGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
VGNKSDL REV+ +EG+A A F+ETSA NV F+ +V ++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 16/174 (9%)
Query: 11 EDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKA---QI 67
+D +FKV+L+G+S VGKS L F + + + +++ ++ +EV I
Sbjct: 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDI 79
Query: 68 W---DTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELH---THSDMNVV 121
W D G R + + L+V+ ++ R++F + L L H D+ V
Sbjct: 80 WEQGDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV- 133
Query: 122 TILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
ILVGNKSDL +REV+ EG+ LA +ETSA N F+ V +I
Sbjct: 134 -ILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
K+V++GD A GK+ LL ++ +F P E ++++G+ V+ +WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQF-PEVYVPTVFENYVADVEVDGRRVELALWDTAGQED 70
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD- 133
+ + Y + L+ + I + +++ +W+ E+ H V ILVG K DL++
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEV-LHFCQGVPIILVGCKVDLRND 129
Query: 134 -----------AREVTTAEGKALAEAQGLF-FMETSALDSSNVTAAFQ 169
+ VT+ EG+++A+ G + E SA V F+
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFE 177
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 80/177 (45%), Gaps = 24/177 (13%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFA-----RDEFYPNSKSTIGVEFQTQKMDINGKEVKAQ 66
D +FKV+L+G+S VGKS L F NS+ T K ++ +
Sbjct: 10 DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVT--LIVYD 67
Query: 67 IW---DTAG--QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELH---THSDM 118
IW D G Q+ A+ L+V+ ++ R++F + L L H D+
Sbjct: 68 IWEQGDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHDL 120
Query: 119 NVVTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
V ILVGNKSDL +REV+ EG+ LA +ETSA N F+ V +I
Sbjct: 121 PV--ILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 14 LFKVVLIGDSAVGKSNLLARFA-----RDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIW 68
+FKV+L+G+S VGKS L F NS+ T K ++ + IW
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVT--LIVYDIW 59
Query: 69 ---DTAG--QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELH---THSDMNV 120
D G Q+ A+ L+V+ ++ R++F + L L H D+ V
Sbjct: 60 EQGDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV 112
Query: 121 VTILVGNKSDLKDAREVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
ILVGNKSDL +REV+ EG+ LA +ETSA N F+ V +I
Sbjct: 113 --ILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 89/182 (48%), Gaps = 7/182 (3%)
Query: 27 KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS+L+ RF + F TI ++ Q + + QI DT G +F A+
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 87 AVGALLVYDISRRQTFDSIG---RWLNELHTHSDMNVVTILVGNKSDLKDAREVTTAEGK 143
+LV+ ++ +Q+ + +G + + ++ + ++ +LVGNK D + REV T E +
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE-DIPVMLVGNKCD-ETQREVDTREAQ 137
Query: 144 ALAEAQGLFFMETSALDSSNVTAAFQTVVT-EIYNILSRKVMISQELKQKDSSSFNGKTV 202
A+A+ FMETSA + NV FQ ++T E +S + + KQK + GK
Sbjct: 138 AVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRSGKQKRTDRVKGKCT 197
Query: 203 VL 204
++
Sbjct: 198 LM 199
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+++++G A GK+ +L + + + T+G +T + K VK +WD GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET----VTYKNVKFNVWDVGGQD 377
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
+ R + YY G G + V D + R D + L+ + +M IL+ NK DL D
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437
Query: 134 A 134
A
Sbjct: 438 A 438
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 77/166 (46%), Gaps = 14/166 (8%)
Query: 17 VVLIGDSAVGKSNLLARFARDEFY----PNSKSTIGVEFQTQKMDINGKEVKAQIWDTAG 72
+ ++G GKS L +F F PN + T E ++ + V ++ DTA
Sbjct: 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSE-----ETVDHQPVHLRVMDTAD 78
Query: 73 QERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTH---SDMNVVTILVGNKS 129
+ R Y A L+VY + RQ+FDS +L L H + ++ +L+GNK
Sbjct: 79 LDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKL 137
Query: 130 DLKDAREVTTAEGKALAEAQGLFFMETSA-LDSSNVTAAFQTVVTE 174
D+ R+VT AEG ALA G F E SA LD +V F V E
Sbjct: 138 DMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVRE 183
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+++++G A GK+ +L + + + T+G +T + K VK +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET----VTYKNVKFNVWDVGGQD 55
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
+ R + YY G G + V D + R D + L+ + +M IL+ NK DL D
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115
Query: 134 A 134
A
Sbjct: 116 A 116
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+++++G A GK+ +L + + + T+G +T + K VK +WD GQ+
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET----VTYKNVKFNVWDVGGQD 68
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
+ R + YY G G + V D + R D + L+ + +M IL+ NK DL D
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 128
Query: 134 A 134
A
Sbjct: 129 A 129
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + ++F T+ + M I G+ ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W+ E+ TH +LVG + DL+D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
+ +T + LA + + + ++E SAL + F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + ++F T+ + M I G+ ++DTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 63
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W+ E+ TH +LVG + DL+D
Sbjct: 64 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 122
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
+ +T + LA + + + ++E SAL + F
Sbjct: 123 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+++++G A GK+ +L + + + T+G +T + K VK +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET----VTYKNVKFNVWDVGGQD 55
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
+ R + YY G G + V D + R D + L+ + +M IL+ NK DL D
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115
Query: 134 A 134
A
Sbjct: 116 A 116
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + ++F T+ + M I G+ ++DTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 64
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W+ E+ TH +LVG + DL+D
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 123
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
+ +T + LA + + + ++E SAL + F
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+++++G A GK+ +L + + + T+G +T + K VK +WD GQ+
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET----VTYKNVKFNVWDVGGQD 67
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
+ R + YY G G + V D + R D + L+ + +M IL+ NK DL D
Sbjct: 68 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127
Query: 134 A 134
A
Sbjct: 128 A 128
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + ++F T+ + M I G+ ++DTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 72
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W+ E+ TH +LVG + DL+D
Sbjct: 73 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 131
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
+ +T + LA + + + ++E SAL + F
Sbjct: 132 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + ++F T+ + M I G+ ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W+ E+ TH +LVG + DL+D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
+ +T + LA + + + ++E SAL + F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + ++F T+ + M I G+ ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W+ E+ TH +LVG + DL+D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
+ +T + LA + + + ++E SAL + F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + ++F T+ + M I G+ ++DTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 64
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W+ E+ TH +LVG + DL+D
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 123
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
+ +T + LA + + + ++E SAL + F
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + ++F T+ + M I G+ ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W+ E+ TH +LVG + DL+D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
+ +T + LA + + + ++E SAL + F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + ++F T+ + M I G+ ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 65
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W+ E+ TH +LVG + DL+D
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 124
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
+ +T + LA + + + ++E SAL + F
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + ++F T+ + M I G+ ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 65
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W+ E+ TH +LVG + DL+D
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 124
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
+ +T + LA + + + ++E SAL + F
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + ++F T+ + M I G+ ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W+ E+ TH +LVG + DL+D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
+ +T + LA + + + ++E SAL + F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + ++F T+ + M I G+ ++DTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 66
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W+ E+ TH +LVG + DL+D
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 125
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
+ +T + LA + + + ++E SAL + F
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + ++F T+ + M I G+ ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W+ E+ TH +LVG + DL+D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
+ +T + LA + + + ++E SAL + F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + ++F T+ + M I G+ ++DTAGQE
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W+ E+ TH +LVG + DL+D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
+ +T + LA + + + ++E SAL + F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + ++F T+ + M I G+ ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 69
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W+ E+ TH +LVG + DL+D
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 128
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
+ +T + LA + + + ++E SAL + F
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + ++F T+ + M I G+ ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W+ E+ TH +LVG + DL+D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
+ +T + LA + + + ++E SAL + F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 78/172 (45%), Gaps = 16/172 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + ++F T+ + M I G+ ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 69
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W+ E+ TH +LVG + DL+D
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 128
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAFQTVV 172
+ +T + LA + + + ++E SAL + F +
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + ++F T+ + + I G+ ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VXIGGEPYTLGLFDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W+ E+ TH +LVG + DL+D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
+ +T + LA + + + ++E SAL + F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + ++F T+ + M I G+ + DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLRDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W+ E+ TH +LVG + DL+D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
+ +T + LA + + + ++E SAL + F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + ++F + + M I G+ ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVM-IGGEPYTLGLFDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W+ E+ TH +LVG + DL+D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
+ +T + LA + + + ++E SAL + F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + ++ T+ + M I G+ ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W+ E+ TH +LVG + DL+D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
+ +T + LA + + + ++E SAL + F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+++++G A GK+ +L + + + T+G +T + K VK +WD G +
Sbjct: 3 MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET----VTYKNVKFNVWDVGGLD 57
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
+ R + YY G G + V D + R D + L+ + +M IL+ NK DL D
Sbjct: 58 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 117
Query: 134 A 134
A
Sbjct: 118 A 118
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+++++G A GK+ +L + + + T+G +T + K VK +WD G +
Sbjct: 4 MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET----VTYKNVKFNVWDVGGLD 58
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
+ R + YY G G + V D + R D + L+ + +M IL+ NK DL D
Sbjct: 59 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 118
Query: 134 A 134
A
Sbjct: 119 A 119
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+++++G A GK+ +L + + + T+G +T + K VK +WD G +
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET----VTYKNVKFNVWDVGGLD 68
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
+ R + YY G G + V D + R D + L+ + +M IL+ NK DL D
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 128
Query: 134 A 134
A
Sbjct: 129 A 129
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + ++F T+ + M I G+ ++DTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGLE 62
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W+ E+ TH +LVG + DL+D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 121
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
+ +T + LA + + + ++E SAL + F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + ++F T+ + M I G+ ++DTAG E
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGLE 66
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIG-RWLNELHTHSDMNVVTILVGNKSDLKD 133
+ + Y L+ + + +F+++ +W+ E+ TH +LVG + DL+D
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRD 125
Query: 134 ------------AREVTTAEGKALA-EAQGLFFMETSALDSSNVTAAF 168
+ +T + LA + + + ++E SAL + F
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
++ L+G GK+ + A +F + T+G F +K + V +IWD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRK--VTKGNVTIKIWDIGGQP 78
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSD----MNVVTILVGNKSD 130
RFR++ Y RG + + D + R+ ++ NELH D + +++GNK D
Sbjct: 79 RFRSMWERYCRGVNAIVYMIDAADREKIEAS---RNELHNLLDKPQLQGIPVLVLGNKRD 135
Query: 131 LKDA 134
L +A
Sbjct: 136 LPNA 139
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
+++ +G A GK+ +L + + + T+G +T + K VK +WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 56
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKDA 134
R + YY G G + V D + R D + L+ + + IL+ NK DL DA
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDA 116
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 6/125 (4%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+++++G A GK+ +L + E + TIG +T + K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNICFTVWDVGGQD 72
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
R R + Y++ G + V D + R+ + L ++ ++ + V +L NK DL +
Sbjct: 73 RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPN 132
Query: 134 AREVT 138
A ++
Sbjct: 133 AMAIS 137
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 9/166 (5%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
+++++G A GK+ +L + E + TIG +T + + + +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKVKLGEVV-TTIPTIGFNVET----VEFRNISFTVWDVGGQDK 73
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKDA 134
R + YY G + V D + R+ D L+ + ++ ILV NK DL +A
Sbjct: 74 IRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNA 133
Query: 135 R---EVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
EVT + F T A + F + T + N
Sbjct: 134 MSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLNN 179
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 15/170 (8%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+++++G GK+ +L + E + TIG +T + K + +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 75 RFRAVTSAYYRGAVGALLVYDISRR----QTFDSIGRWLNELHTHSDMNVVTILVGNKSD 130
R R++ YYR G + V D + R + + + R LNE N V ++ NK D
Sbjct: 73 RIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELR---NAVWLVFANKQD 129
Query: 131 LKDAR---EVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
L +A E+T G + F T A + + + + N
Sbjct: 130 LPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNLKN 179
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 18/136 (13%)
Query: 3 FYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKE 62
F+ EE ++ L+G GK+ + A +F + T+G F +K I
Sbjct: 27 FWKEE-------MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRK--ITKGN 75
Query: 63 VKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSD----M 118
V ++WD GQ RFR++ Y RG + + D + ++ ++ NELH D
Sbjct: 76 VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASK---NELHNLLDKPQLQ 132
Query: 119 NVVTILVGNKSDLKDA 134
+ +++GNK DL A
Sbjct: 133 GIPVLVLGNKRDLPGA 148
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
++ L+G GK+ + A +F + T+G F +K I V ++WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRK--ITKGNVTIKLWDIGGQP 78
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
RFR++ Y RG + + D + ++ ++ L+ L + + +LV GNK DL
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138
Query: 134 A 134
A
Sbjct: 139 A 139
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 15/151 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+++++G GK+ +L + E + TIG +T + K + +WD GQ+
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVET----VQYKNISFTVWDVGGQD 55
Query: 75 RFRAVTSAYYRGAVGALLVYDISRR----QTFDSIGRWLNELHTHSDMNVVTILVGNKSD 130
R R++ YYR G + V D + R + + + R LNE N ++ NK D
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELR---NAAWLVFANKQD 112
Query: 131 LKDAR---EVTTAEGKALAEAQGLFFMETSA 158
L +A E+T G + F T A
Sbjct: 113 LPEAMSAAEITEKLGLHSIRNRPWFIQATCA 143
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+++++G GK+ +L + E + TIG +T + K + +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 75 RFRAVTSAYYRGAVGALLVYDISRR----QTFDSIGRWLNELHTHSDMNVVTILVGNKSD 130
R R++ YYR G + V D + R + + + R LNE N ++ NK D
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELR---NAAWLVFANKQD 129
Query: 131 LKDA 134
L +A
Sbjct: 130 LPEA 133
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
KV+++G GK+ +L +F+ +E S TIG +++ IN + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGS--NVEEIVINN--TRFLMWDIGGQES 72
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKDA 134
R+ + YY ++V D + R+ L ++ H D+ +L+ NK D+K+
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 135 REVTTAE 141
+T AE
Sbjct: 133 --MTVAE 137
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
KV+++G GK+ +L +F+ +E S TIG +++ IN + +WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGS--NVEEIVINN--TRFLMWDIGGQES 77
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKDA 134
R+ + YY ++V D + R+ L ++ H D+ +L+ NK D+K+
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137
Query: 135 REVTTAE 141
+T AE
Sbjct: 138 --MTVAE 142
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
KV+++G GK+ +L +F+ +E S TIG +++ IN + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGS--NVEEIVINN--TRFLMWDIGGQES 72
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKDA 134
R+ + YY ++V D + R+ L ++ H D+ +L+ NK D+K+
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 135 REVTTAE 141
+T AE
Sbjct: 133 --MTVAE 137
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
KV+++G GK+ +L +F+ +E S TIG +++ IN + +WD GQE
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGS--NVEEIVINN--TRFLMWDIGGQES 78
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKDA 134
R+ + YY ++V D + R+ L ++ H D+ +L+ NK D+K+
Sbjct: 79 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 138
Query: 135 REVTTAE 141
+T AE
Sbjct: 139 --MTVAE 143
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+++++G A GK+ +L + E + TIG +T + K + +WD GQ+
Sbjct: 21 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 75
Query: 75 RFRAVTSAYYRGAVGALLVYDISRR----QTFDSIGRWLNELHTHSDMNVVTILVGNKSD 130
+ R + Y++ G + V D + R + D + R LNE + V ++ NK D
Sbjct: 76 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR---DAVLLVFANKQD 132
Query: 131 LKDA 134
L +A
Sbjct: 133 LPNA 136
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 8/127 (6%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
KV+++G GK+ +L +F +E S TIG + +I K +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEVVHTS-PTIGSNVE----EIVVKNTHFLMWDIGGQES 72
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKDA 134
R+ + YY +LV D R+ L + H D+ +L+ NK D+K
Sbjct: 73 LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGC 132
Query: 135 REVTTAE 141
+T AE
Sbjct: 133 --MTAAE 137
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+++++G A GK+++L + E + TIG +T + K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDM-NVVTILVGNKSDLKD 133
+ R + YY+ + V D + R L ++ +M N + ++ NK DL
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQ 132
Query: 134 AREVT 138
A ++
Sbjct: 133 AMSIS 137
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+++++G A GK+ +L + E + TIG +T + K + +WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNICFTVWDVGGQD 84
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
+ R + Y++ G + V D + R+ L ++ ++ +LV NK D+ +
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144
Query: 134 AREVT 138
A V+
Sbjct: 145 AMPVS 149
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+++++G A GK+ +L + E + TIG +T + K + +WD GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 220
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
+ R + Y++ G + V D + R+ + L + ++ +LV NK DL +
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280
Query: 134 A 134
A
Sbjct: 281 A 281
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+++++G A GK+ +L + E + TIG +T + K + +WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 55
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
+ R + Y++ G + V D + R+ + L + ++ +LV NK DL +
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115
Query: 134 A 134
A
Sbjct: 116 A 116
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+++++G A GK+ +L + E + TIG +T + K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
+ R + Y++ G + V D + R+ + L + ++ +LV NK DL +
Sbjct: 73 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 132
Query: 134 A 134
A
Sbjct: 133 A 133
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+++++G A GK+ +L + E + TIG +T + K + +WD GQ+
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 71
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
+ R + Y++ G + V D + R+ + L + ++ +LV NK DL +
Sbjct: 72 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 131
Query: 134 A 134
A
Sbjct: 132 A 132
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+++++G GK+ +L +F ++ S T+G +T + + K IWD GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGEDIDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 71
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
R+ Y+ G + V D + RQ R L L + T+L+ NK DL
Sbjct: 72 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 131
Query: 134 A 134
A
Sbjct: 132 A 132
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+++++G GK+ +L +F ++ S T+G +T + + K IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
R+ Y+ G + V D + RQ R L L + T+L+ NK DL
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133
Query: 134 A 134
A
Sbjct: 134 A 134
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 7/138 (5%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEF--YPNSKSTIGVEFQTQKMDINGK---EVKAQIWDT 70
K+ ++G++ GK+ LL + + + +T+G++ + + I K ++ +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 71 AGQERFRAVTSAYYRGAVGALLVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKS 129
AG+E F + + L VYD+S+ Q D+ WL + + + V ILVG
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPV-ILVGTHL 120
Query: 130 DLKDAREVTTAEGKALAE 147
D+ D ++ K E
Sbjct: 121 DVSDEKQRKACXSKITKE 138
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+++++G GK+ +L +F ++ S T+G +T + + K IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
R+ Y+ G + V D + RQ R L L + T+L+ NK DL
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133
Query: 134 A 134
A
Sbjct: 134 A 134
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 7/138 (5%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEF--YPNSKSTIGVEFQTQKMDINGKEVK---AQIWDT 70
K+ ++G++ GK+ LL + + + +T+G++ + + I K + +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 71 AGQERFRAVTSAYYRGAVGALLVYDISRRQT-FDSIGRWLNELHTHSDMNVVTILVGNKS 129
AG+E F + + L VYD+S+ Q D+ WL + + + V ILVG
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPV-ILVGTHL 122
Query: 130 DLKDAREVTTAEGKALAE 147
D+ D ++ K E
Sbjct: 123 DVSDEKQRKACXSKITKE 140
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 11/143 (7%)
Query: 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWD 69
A D +++L+G GK+ LL + A ++ S T F + + G K +WD
Sbjct: 13 APDQEVRILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKSVQSQG--FKLNVWD 67
Query: 70 TAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNK 128
GQ + R +Y+ + V D + R+ F+ G+ L EL ++ V +L+ NK
Sbjct: 68 IGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANK 127
Query: 129 SDLKDAREVTTAEGKALAEAQGL 151
DL +T A +AE L
Sbjct: 128 QDL-----LTAAPASEIAEGLNL 145
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 11/143 (7%)
Query: 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWD 69
A D +++L+G GK+ LL + A ++ S T F + + G K +WD
Sbjct: 12 APDQEVRILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKSVQSQG--FKLNVWD 66
Query: 70 TAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNK 128
GQ + R +Y+ + V D + R+ F+ G+ L EL ++ V +L+ NK
Sbjct: 67 IGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANK 126
Query: 129 SDLKDAREVTTAEGKALAEAQGL 151
DL +T A +AE L
Sbjct: 127 QDL-----LTAAPASEIAEGLNL 144
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+++++G A GK+ +L + E + TIG +T + K + +WD G +
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGLD 57
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKD 133
+ R + Y++ G + V D + R+ + L + ++ +LV NK DL +
Sbjct: 58 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 117
Query: 134 A 134
A
Sbjct: 118 A 118
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+++++G GK+ +L R E +K TIG +T ++ K +K +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVET----LSYKNLKLNVWDLGGQT 73
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSD 130
R YY + V D + + + + L+ + ++ +LV NK D
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 15/165 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+++++G GK+ +L R E + TIG +T + K +K Q+WD GQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVET----VTYKNLKFQVWDLGGQT 57
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNE----LHTHSDMNVVTILVGNKSD 130
R YY + V D R D IG +E L + ++ NK D
Sbjct: 58 SIRPYWRCYYSNTDAVIYVVDSCDR---DRIGISKSELVAMLEEEELRKAILVVFANKQD 114
Query: 131 LKDA---REVTTAEGKALAEAQGLFFMETSALDSSNVTAAFQTVV 172
++ A E+ A G + + +TSA + + A + +V
Sbjct: 115 MEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 159
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 11/137 (8%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
+++L+G GK+ LL + A ++ S T F + + G K +WD GQ +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKSVQSQG--FKLNVWDIGGQRK 60
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKDA 134
R +Y+ + V D + R+ F+ G+ L EL ++ V +L+ NK DL
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL--- 117
Query: 135 REVTTAEGKALAEAQGL 151
+T A +AE L
Sbjct: 118 --LTAAPASEIAEGLNL 132
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 15/151 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+++++G GK+ +L + E + TIG + + + +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVEC----VQYCNISFTVWDVGGQD 72
Query: 75 RFRAVTSAYYRGAVGALLVYDISRR----QTFDSIGRWLNELHTHSDMNVVTILVGNKSD 130
R R++ YY G + V D + R + + + R LNE N ++ NK D
Sbjct: 73 RIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNE---DELCNAAWLVFANKQD 129
Query: 131 LKDAR---EVTTAEGKALAEAQGLFFMETSA 158
L +A E+T G + F T A
Sbjct: 130 LPEAMSAAEITEKLGLHSIRNRPWFIQATCA 160
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQT-QKMDING-------KEVKAQ 66
KV LIGD GK++LL + + F P T G+ T Q +I G KE
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 67 IWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVG 126
WD GQE A + + +L+ D +T + WL + + + V I+V
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLD---SRTDSNKHYWLRHIEKYGGKSPV-IVVM 157
Query: 127 NKSD 130
NK D
Sbjct: 158 NKID 161
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 26 GKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYR 85
GK+ +L +F ++ S T+G +T + + K IWD GQ+ R+ Y+
Sbjct: 30 GKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 86 GAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKDA 134
G + V D + RQ R L L + T+L+ NK DL A
Sbjct: 85 STDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
+++L+G GK+ LL + A ++ S T F + + G K +WD G +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKSVQSQG--FKLNVWDIGGLRK 60
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILV-GNKSDLKDA 134
R +Y+ + V D + R+ F+ G+ L EL ++ V +L+ NK DL
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL--- 117
Query: 135 REVTTAEGKALAEAQGL 151
+T A +AE L
Sbjct: 118 --LTAAPASEIAEGLNL 132
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 17/141 (12%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
+++++G GK+ +L R E + TIG +T + K +K Q+WD G
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVET----VTYKNLKFQVWDLGGLT 59
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSD----MNVVTILVGNKSD 130
R YY + V D R D IG +EL + + ++ NK D
Sbjct: 60 SIRPYWRCYYSNTDAVIYVVDSCDR---DRIGISKSELVAMLEEEELRKAILVVFANKQD 116
Query: 131 LKDAREVTTAEGKALAEAQGL 151
++ A +T++E +A + GL
Sbjct: 117 MEQA--MTSSE---MANSLGL 132
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 67 IWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMN---VVTI 123
++D +GQ R+R + YY+ + V D S R L+ L H D+ + +
Sbjct: 71 VFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPIL 130
Query: 124 LVGNKSDLKDA 134
NK DL+DA
Sbjct: 131 FFANKMDLRDA 141
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 16 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQER 75
+++++G GK+ +L R E + TIG +T + K +K Q+WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVET----VTYKNLKFQVWDLGGLTS 63
Query: 76 FRAVTSAYYRGAVGALLVYDISRRQTFDSIG 106
R YY + V D R D IG
Sbjct: 64 IRPYWRCYYSNTDAVIYVVDSCDR---DRIG 91
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 78/178 (43%), Gaps = 13/178 (7%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
++ ++GD+ GKS+L+ RF + K+ E ++M ++G+ I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTE--SEQYKKEMLVDGQTHLVLIREEAG-- 63
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRW---LNELHTHSDMNVVTILVGNKSDL 131
A + + A + V+ + +F ++ R L+ L + LVG + +
Sbjct: 64 ---APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120
Query: 132 --KDAREVTTAEGKAL-AEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMIS 186
R V A +AL A+ + + ET A NV FQ V ++ + ++ +++
Sbjct: 121 SASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQLLA 178
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 78/178 (43%), Gaps = 13/178 (7%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQE 74
++ ++GD+ GKS+L+ RF + K+ E ++M ++G+ I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTE--SEQYKKEMLVDGQTHLVLIREEAG-- 63
Query: 75 RFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRW---LNELHTHSDMNVVTILVGNKSDL 131
A + + A + V+ + +F ++ R L+ L + LVG + +
Sbjct: 64 ---APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120
Query: 132 --KDAREVTTAEGKAL-AEAQGLFFMETSALDSSNVTAAFQTVVTEIYNILSRKVMIS 186
R V A +AL A+ + + ET A NV FQ V ++ + ++ +++
Sbjct: 121 SASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQLLA 178
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNS---------KSTIGVEFQTQKMDINGKEVKA 65
F ++++G+S +GKS L+ + YP + T+ +E T +++ G +++
Sbjct: 6 FTLMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEASTVEIEERGVKLRL 65
Query: 66 QIWDTAG 72
+ DT G
Sbjct: 66 TVVDTPG 72
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNS---------KSTIGVEFQTQKMDINGKEVKA 65
F ++++G+S +GKS L+ + YP + T+ +E T +++ G +++
Sbjct: 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRL 97
Query: 66 QIWDTAG 72
+ DT G
Sbjct: 98 TVVDTPG 104
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 10 AEDYLFKVVLIGDSAVGKSNLLARFARDEF--YPNSKSTIGVEFQTQKMDINGKEVKAQI 67
++ + F ++ +G++ +GKS L+ +F P + + GV+ Q+ D+ V+ ++
Sbjct: 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKL 97
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 13 YLFKVVLIGDSAVGKSNLLARFARDEFYPNS---------KSTIGVEFQTQKMDINGKEV 63
+ F + ++G+S +GKS L+ + YP + T+ +E T +++ G ++
Sbjct: 17 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKL 76
Query: 64 KAQIWDTAG 72
+ + DT G
Sbjct: 77 RLTVVDTPG 85
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNS---------KSTIGVEFQTQKMDINGKEVKA 65
F + ++G+S +GKS L+ + YP + T+ +E T +++ G +++
Sbjct: 38 FTLXVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRL 97
Query: 66 QIWDTAG 72
+ DT G
Sbjct: 98 TVVDTPG 104
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 12/127 (9%)
Query: 12 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 71
D +V+++G GK+++L R + + V +T + K + ++WD
Sbjct: 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVG-VNLET----LQYKNISFEVWDLG 74
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMN----VVTILVGN 127
GQ R Y+ + V D + R D +G +EL+ D + + ++ N
Sbjct: 75 GQTGVRPYWRCYFSDTDAVIYVVDSTDR---DRMGVAKHELYALLDEDELRKSLLLIFAN 131
Query: 128 KSDLKDA 134
K DL DA
Sbjct: 132 KQDLPDA 138
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 39 FYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93
+Y T+ ++ + D+N +KAQ W T ++RF +T+++ G A L
Sbjct: 388 YYQKLPPTLNLDCSEPEFDLNYVPLKAQEWKT--EKRFIGLTNSFGFGGTNATLC 440
>pdb|1TJV|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJW|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
Length = 474
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 135 REVTTAEGKA--LAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
R+ TA GKA LAE +G+ + S D +++ F + V++++N
Sbjct: 387 RQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFN 431
>pdb|1TJU|A Chain A, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|B Chain B, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|C Chain C, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|D Chain D, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
Length = 474
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 135 REVTTAEGKA--LAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
R+ TA GKA LAE +G+ + S D +++ F + V++++N
Sbjct: 387 RQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFN 431
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
Length = 468
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 135 REVTTAEGKA--LAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
R+ TA GKA LAE +G+ + S D +++ F + V++++N
Sbjct: 387 RQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFN 431
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 39 FYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLV 93
+Y T+ ++ + D+N +KAQ W T ++RF +T+++ G A L
Sbjct: 382 YYQKLPPTLNLDCSEPEFDLNYVPLKAQEWKT--EKRFIGLTNSFGFGGTNATLC 434
>pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
Length = 468
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 135 REVTTAEGKA--LAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
R+ TA GKA LAE +G+ + S D +++ F + V++++N
Sbjct: 387 RQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFN 431
>pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
Length = 468
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 135 REVTTAEGKA--LAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
R+ TA GKA LAE +G+ + S D +++ F + V++++N
Sbjct: 387 RQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFN 431
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 34/170 (20%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTI---GVEFQTQKMDINGKEVKAQIWDTA 71
F ++++G + VGK+ + + AR +F KS + G F+ ++ + Q+W
Sbjct: 94 FVILMVGVNGVGKTTTIGKLAR-QFEQQGKSVMLAAGDTFRAAAVE------QLQVW--- 143
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQ--------TFDSIGRWLNELHTHSDMNVVTI 123
GQ R A + GA A +++D + D+ GR N+ H ++ + +
Sbjct: 144 GQ-RNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKI-V 201
Query: 124 LVGNKSDLKDAREV-----------TTAEGKALAEAQGLFFMETSALDSS 162
V K D++ EV ++ K EA GL + + LD +
Sbjct: 202 RVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGT 251
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 34/170 (20%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTI---GVEFQTQKMDINGKEVKAQIWDTA 71
F ++++G + VGK+ + + AR +F KS + G F+ ++ + Q+W
Sbjct: 99 FVILMVGVNGVGKTTTIGKLAR-QFEQQGKSVMLAAGDTFRAAAVE------QLQVW--- 148
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQ--------TFDSIGRWLNELHTHSDMNVVTI 123
GQ R A + GA A +++D + D+ GR N+ H ++ + +
Sbjct: 149 GQ-RNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKI-V 206
Query: 124 LVGNKSDLKDAREV-----------TTAEGKALAEAQGLFFMETSALDSS 162
V K D++ EV ++ K EA GL + + LD +
Sbjct: 207 RVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGT 256
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 34/170 (20%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTI---GVEFQTQKMDINGKEVKAQIWDTA 71
F ++++G + VGK+ + + AR +F KS + G F+ ++ + Q+W
Sbjct: 294 FVILMVGVNGVGKTTTIGKLAR-QFEQQGKSVMLAAGDTFRAAAVE------QLQVW--- 343
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQT--------FDSIGRWLNELHTHSDMNVVTI 123
GQ R A + GA A +++D + D+ GR N+ H ++ + +
Sbjct: 344 GQ-RNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKI-V 401
Query: 124 LVGNKSDLKDAREV-----------TTAEGKALAEAQGLFFMETSALDSS 162
V K D++ EV ++ K EA GL + + LD +
Sbjct: 402 RVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGT 451
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 34/170 (20%)
Query: 15 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTI---GVEFQTQKMDINGKEVKAQIWDTA 71
F ++++G + VGK+ + + AR +F KS + G F+ ++ + Q+W
Sbjct: 100 FVILMVGVNGVGKTTTIGKLAR-QFEQQGKSVMLAAGDTFRAAAVE------QLQVW--- 149
Query: 72 GQERFRAVTSAYYRGAVGALLVYDISRRQ--------TFDSIGRWLNELHTHSDMNVVTI 123
GQ R A + GA A +++D + D+ GR N+ H ++ + +
Sbjct: 150 GQ-RNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKI-V 207
Query: 124 LVGNKSDLKDAREV-----------TTAEGKALAEAQGLFFMETSALDSS 162
V K D++ EV ++ K EA GL + + LD +
Sbjct: 208 RVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGT 257
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human Grlf1
(P190rhogap)
Length = 255
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 89 GALLVYDISR--RQTFDSIGRWLNELHTH-SDMNVVTILVGNKSDLKDAREVTTAEGKAL 145
G LL D+SR + FD ++++ L+ + ++V K D R + A AL
Sbjct: 165 GFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFAL 224
Query: 146 AEAQGLFFMETSALDSSNVTAAFQTVVTEI 175
++ + L +ETSA + NV AF T+V I
Sbjct: 225 SK-KNLQVVETSARSNVNVDLAFSTLVQLI 253
>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 447
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 135 REVTTAEGKA--LAEAQGLFFMETSALDSSNVTAAFQTVVTEIYN 177
R+ TA GKA LAE +G+ S D +++ F + V++++N
Sbjct: 369 RQAHTASGKAVHLAETKGITINNLSLEDLKSISPQFSSDVSQVFN 413
>pdb|3LOG|A Chain A, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3LOG|B Chain B, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3LOG|C Chain C, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3LOG|D Chain D, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3VEH|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
pdb|3VEH|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
pdb|3VEH|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
pdb|3VEH|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
Length = 451
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTI 47
RA+ + L G A+G+ + R ARD+ NSK +
Sbjct: 260 RADGVVITEPLAGTRALGRGPAIDRLARDDLESNSKEIV 298
>pdb|2I6Y|A Chain A, Structure And Mechanism Of Mycobacterium Tuberculosis
Salicylate Synthase, Mbti
Length = 470
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTI 47
RA+ + L G A+G+ + R ARD+ NSK +
Sbjct: 278 RADGVVITEPLAGTRALGRGPAIDRLARDDLESNSKEIV 316
>pdb|3RV8|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3RV8|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3RV8|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3RV8|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3ST6|A Chain A, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
pdb|3ST6|B Chain B, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
pdb|3ST6|C Chain C, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
pdb|3ST6|D Chain D, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
Length = 450
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTI 47
RA+ + L G A+G+ + R ARD+ NSK +
Sbjct: 258 RADGVVITEPLAGTRALGRGPAIDRLARDDLESNSKEIV 296
>pdb|2G5F|A Chain A, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|2G5F|B Chain B, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|2G5F|C Chain C, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|2G5F|D Chain D, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|3RV6|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Phenyl R-Group
pdb|3RV6|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Phenyl R-Group
pdb|3RV7|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV7|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV7|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV7|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV9|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
pdb|3RV9|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
pdb|3RV9|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
pdb|3RV9|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
Length = 450
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 9 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTI 47
RA+ + L G A+G+ + R ARD+ NSK +
Sbjct: 258 RADGVVITEPLAGTRALGRGPAIDRLARDDLESNSKEIV 296
>pdb|2YHM|A Chain A, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|B Chain B, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|C Chain C, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|D Chain D, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|E Chain E, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|F Chain F, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|G Chain G, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|H Chain H, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|I Chain I, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|J Chain J, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHP|A Chain A, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|B Chain B, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|C Chain C, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|D Chain D, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|E Chain E, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|F Chain F, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|G Chain G, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|H Chain H, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|I Chain I, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|J Chain J, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|L Chain L, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|N Chain N, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|O Chain O, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|P Chain P, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|Q Chain Q, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|R Chain R, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|S Chain S, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|T Chain T, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|U Chain U, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|V Chain V, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|A Chain A, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|B Chain B, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|C Chain C, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|D Chain D, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|E Chain E, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|F Chain F, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|G Chain G, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|H Chain H, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|I Chain I, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|J Chain J, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|K Chain K, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|L Chain L, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|M Chain M, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|N Chain N, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|O Chain O, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|P Chain P, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|Q Chain Q, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|W Chain W, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|Y Chain Y, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|Z Chain Z, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
Length = 375
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 48 GVEFQTQKMDINGKEVKAQIWDTA 71
GV+ T + DINGKE+K ++ A
Sbjct: 94 GVDVTTHRQDINGKEMKFEVLTLA 117
>pdb|2WJ8|A Chain A, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|B Chain B, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|C Chain C, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|D Chain D, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|E Chain E, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|F Chain F, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|G Chain G, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|H Chain H, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|I Chain I, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|J Chain J, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|K Chain K, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|L Chain L, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|M Chain M, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|N Chain N, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|O Chain O, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|P Chain P, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|Q Chain Q, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|R Chain R, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|S Chain S, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|T Chain T, Respiratory Syncitial Virus Ribonucleoprotein
Length = 391
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 48 GVEFQTQKMDINGKEVKAQIWDTA 71
GV+ T + DINGKE+K ++ A
Sbjct: 94 GVDVTTHRQDINGKEMKFEVLTLA 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,338,392
Number of Sequences: 62578
Number of extensions: 187570
Number of successful extensions: 1157
Number of sequences better than 100.0: 377
Number of HSP's better than 100.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 596
Number of HSP's gapped (non-prelim): 378
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)