BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027466
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QB5|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Adp And Mn2+
pdb|2QB5|B Chain B, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Adp And Mn2+
Length = 347
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 14/186 (7%)
Query: 32 VGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLT-------- 83
VGY L+ KK K L R +G+ V ++ +RP+ +QGP D+++HKLT
Sbjct: 22 VGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQ 81
Query: 84 ----GKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPR 139
E +EY HPE VLDP AI+ L +R + + + ++ P
Sbjct: 82 NDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPP 141
Query: 140 QLVIER-DASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQ 198
+ + ++ K GLT P + K VA G+ SHE+++ ++Q L ++PP V+Q
Sbjct: 142 FMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNAIQPPCVVQ 200
Query: 199 EFVNHG 204
F+NH
Sbjct: 201 NFINHN 206
>pdb|2Q7D|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Amppnp And Mn2+
pdb|2Q7D|B Chain B, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Amppnp And Mn2+
Length = 346
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 14/186 (7%)
Query: 32 VGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLT-------- 83
VGY L+ KK K L R +G+ V ++ +RP+ +QGP D+++HKLT
Sbjct: 21 VGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQ 80
Query: 84 ----GKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPR 139
E +EY HPE VLDP AI+ L +R + + + ++ P
Sbjct: 81 NDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPP 140
Query: 140 QLVIER-DASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQ 198
+ + ++ K GLT P + K VA G+ SHE+++ ++Q L ++PP V+Q
Sbjct: 141 FMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNAIQPPCVVQ 199
Query: 199 EFVNHG 204
F+NH
Sbjct: 200 NFINHN 205
>pdb|2ODT|X Chain X, Structure Of Human Inositol 1,3,4-Trisphosphate 56-Kinase
Length = 328
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 14/186 (7%)
Query: 32 VGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLT-------- 83
VGY L+ KK K L R +G V ++ +RP+ +QGP D+++HKLT
Sbjct: 11 VGYWLSEKKIKKLNFQAFAELCRKRGXEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQ 70
Query: 84 ----GKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKV-DVP 138
E +EY HPE VLDP AI+ L +R + + + ++ P
Sbjct: 71 NDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYXEDDRICSPP 130
Query: 139 RQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQ 198
+ ++ K GLT P + K VA G+ SHE ++ ++Q L ++PP V+Q
Sbjct: 131 FXELTSLCGDDTXRLLEKNGLTFPFICKTRVAHGT-NSHEXAIVFNQEGLNAIQPPCVVQ 189
Query: 199 EFVNHG 204
F+NH
Sbjct: 190 NFINHN 195
>pdb|1Z2N|X Chain X, Inositol 1,3,4-trisphosphate 5/6-kinase Complexed Mg2+/adp
pdb|1Z2O|X Chain X, Inositol 1,3,4-Trisphosphate 56-Kinase In Complex With
Mg2+ADPINS(1,3,4,6)P4
pdb|1Z2P|X Chain X, Inositol 1,3,4-Trisphosphate 56-Kinase In Complex With
Mg2+AMP- PcpINS(1,3,4)P3
Length = 324
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/118 (18%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 91 LEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSI 150
+ +Y + HP+V L+ +H+ S + + + + N+ + +P + + +
Sbjct: 74 MRKYEKDHPKVLFLES----SAIHDMMSSREEINALLIKNN---IPIPNSFSV-KSKEEV 125
Query: 151 PDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGMQMA 208
++ L LP + KP A G+ +H++ + +Q + + P + Q ++NH ++
Sbjct: 126 IQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDDIHFPCLCQHYINHNNKIV 183
>pdb|3BT7|A Chain A, Structure Of E. Coli 5-Methyluridine Methyltransferase
Trma In Complex With 19 Nucleotide T-Arm Analogue
pdb|3BT7|B Chain B, Structure Of E. Coli 5-Methyluridine Methyltransferase
Trma In Complex With 19 Nucleotide T-Arm Analogue
Length = 369
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 24 QQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGIL---FVAIDQNRPLSDQGPFDIVLH 80
Q +S++ V + S+ + + G+ RN +L ID LS+Q ++ H
Sbjct: 70 QTKSRIRVDSFPAASELINQLMTAMIAGV-RNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 128
Query: 81 KLTGKEWRQILEEYR 95
K EWRQ E R
Sbjct: 129 KKLDDEWRQEAEALR 143
>pdb|2EXU|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Transcription Elongation Factors Spt4-Spt5ngn Domain
Length = 200
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 135 VDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLV 169
++ P+Q VIE+ + +PD+ + L +P+ PL+
Sbjct: 154 IEAPKQSVIEKFCNGVPDIYISQKLLIPVQELPLL 188
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
pdb|1CNZ|B Chain B, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
Length = 363
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 58/135 (42%), Gaps = 23/135 (17%)
Query: 87 WRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMN------LSNSYGKVDVPRQ 140
WR+I+ + +T+P+V + H++ + +Q + D + SN +G +
Sbjct: 205 WREIVNDVAKTYPDVE-------LAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDEC 257
Query: 141 LVIERDASSIPDVVLK---------AGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL 191
+I +P L AG + P +A +A+ A+ L+L +YSL
Sbjct: 258 AMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLL-RYSLDAN 316
Query: 192 EPPLVLQEFVNHGMQ 206
+ +++ +N ++
Sbjct: 317 DAATAIEQAINRALE 331
>pdb|3EH7|A Chain A, The Structure Of A Putative 4-Hydroxybutyrate
Coa-Transferase From Porphyromonas Gingivalis W83
Length = 434
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 117 QSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDV--VLKAGLTLPLVAKPLVADGSA 174
Q + +C+ S + G+VD R ++ SI + K G +V P++A+G+A
Sbjct: 324 QVVSECIGSKQFSGTGGQVDYVRGAAWSKNGKSIXAIPSTAKNGTASRIV--PIIAEGAA 381
Query: 175 KS---HELSLAYDQYSLKKLE 192
+ +E+ +Y + +L+
Sbjct: 382 VTTLRNEVDYVVTEYGIAQLK 402
>pdb|3TEZ|A Chain A, Crystal Structure Of Anthrax Protective Antigen Mutant
S337c N664c And Dithiolacetone Modified To 1.8-A
Resolution
Length = 735
Score = 27.7 bits (60), Expect = 5.5, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 29 LVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWR 88
L V GY + K ++FL P + + KG+ + + P+ K+TG+ +
Sbjct: 187 LEVEGYTVDVKNKRTFLSPWISNIHEKKGLTKYKSSPEKWSTASDPYSD-FEKVTGRIDK 245
Query: 89 QILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNS 131
+ E R HP V Y I H+ +L D + N+
Sbjct: 246 NVSPEAR--HPLVAA----YPIVHVDMENIILSKNEDQSTQNT 282
>pdb|4EE2|A Chain A, Crystal Structure Of Anthrax Protective Antigen K446m
Mutant To 1.91-A Resolution
Length = 736
Score = 27.3 bits (59), Expect = 6.0, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 29 LVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWR 88
L V GY + K ++FL P + + KG+ + + P+ K+TG+ +
Sbjct: 188 LEVEGYTVDVKNKRTFLSPWISNIHEKKGLTKYKSSPEKWSTASDPYSD-FEKVTGRIDK 246
Query: 89 QILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNS 131
+ E R HP V Y I H+ +L D + N+
Sbjct: 247 NVSPEAR--HPLVAA----YPIVHVDMENIILSKNEDQSTQNT 283
>pdb|1T6B|X Chain X, Crystal Structure Of B. Anthracis Protective Antigen
Complexed With Human Anthrax Toxin Receptor
pdb|3Q8A|A Chain A, Crystal Structure Of Wt Protective Antigen (Ph 5.5)
pdb|3Q8B|A Chain A, Crystal Structure Of Wt Protective Antigen (Ph 9.0)
Length = 735
Score = 27.3 bits (59), Expect = 6.1, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 29 LVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWR 88
L V GY + K ++FL P + + KG+ + + P+ K+TG+ +
Sbjct: 187 LEVEGYTVDVKNKRTFLSPWISNIHEKKGLTKYKSSPEKWSTASDPYSD-FEKVTGRIDK 245
Query: 89 QILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNS 131
+ E R HP V Y I H+ +L D + N+
Sbjct: 246 NVSPEAR--HPLVAA----YPIVHVDMENIILSKNEDQSTQNT 282
>pdb|3TEY|A Chain A, Crystal Structure Of Anthrax Protective Antigen (Membrane
Insertion Loop Deleted) Mutant S337c N664c To 2.06-A
Resolution
Length = 715
Score = 27.3 bits (59), Expect = 6.1, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 29 LVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWR 88
L V GY + K ++FL P + + KG+ + + P+ K+TG+ +
Sbjct: 187 LEVEGYTVDVKNKRTFLSPWISNIHEKKGLTKYKSSPEKWSTASDPYSD-FEKVTGRIDK 245
Query: 89 QILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNS 131
+ E R HP V Y I H+ +L D + N+
Sbjct: 246 NVSPEAR--HPLVAA----YPIVHVDMENIILSKNEDQSTQNT 282
>pdb|1ACC|A Chain A, Anthrax Protective Antigen
Length = 735
Score = 27.3 bits (59), Expect = 6.1, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 29 LVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWR 88
L V GY + K ++FL P + + KG+ + + P+ K+TG+ +
Sbjct: 187 LEVEGYTVDVKNKRTFLSPWISNIHEKKGLTKYKSSPEKWSTASDPYSD-FEKVTGRIDK 245
Query: 89 QILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNS 131
+ E R HP V Y I H+ +L D + N+
Sbjct: 246 NVSPEAR--HPLVAA----YPIVHVDMENIILSKNEDQSTQNT 282
>pdb|3Q8C|A Chain A, Crystal Structure Of Protective Antigen W346f (Ph 5.5)
pdb|3Q8E|A Chain A, Crystal Structure Of Protective Antigen W346f (Ph 8.5)
Length = 735
Score = 27.3 bits (59), Expect = 6.1, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 29 LVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWR 88
L V GY + K ++FL P + + KG+ + + P+ K+TG+ +
Sbjct: 187 LEVEGYTVDVKNKRTFLSPWISNIHEKKGLTKYKSSPEKWSTASDPYSD-FEKVTGRIDK 245
Query: 89 QILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNS 131
+ E R HP V Y I H+ +L D + N+
Sbjct: 246 NVSPEAR--HPLVAA----YPIVHVDMENIILSKNEDQSTQNT 282
>pdb|3TEW|A Chain A, Crystal Structure Of Anthrax Protective Antigen (Membrane
Insertion Loop Deleted) To 1.45-A Resolution
pdb|3TEX|A Chain A, Crystal Structure Of Anthrax Protective Antigen (Membrane
Insertion Loop Deleted) To 1.7-A Resolution
Length = 715
Score = 27.3 bits (59), Expect = 6.4, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 29 LVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWR 88
L V GY + K ++FL P + + KG+ + + P+ K+TG+ +
Sbjct: 187 LEVEGYTVDVKNKRTFLSPWISNIHEKKGLTKYKSSPEKWSTASDPYS-DFEKVTGRIDK 245
Query: 89 QILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNS 131
+ E R HP V Y I H+ +L D + N+
Sbjct: 246 NVSPEAR--HPLVAA----YPIVHVDMENIILSKNEDQSTQNT 282
>pdb|4ELZ|A Chain A, Ccdbvfi:gyra14vfi
pdb|4ELZ|B Chain B, Ccdbvfi:gyra14vfi
Length = 153
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 72 QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL 104
Q ++ LH+LTG E +IL+EY+ E+ L
Sbjct: 115 QAILELRLHRLTGLEHEKILDEYKALLDEIAEL 147
>pdb|3KWV|A Chain A, Structural Basis For The Unfolding Of Anthrax Lethal
Factor By Protective Antigen Oligomers
pdb|3KWV|B Chain B, Structural Basis For The Unfolding Of Anthrax Lethal
Factor By Protective Antigen Oligomers
pdb|3KWV|D Chain D, Structural Basis For The Unfolding Of Anthrax Lethal
Factor By Protective Antigen Oligomers
pdb|3KWV|E Chain E, Structural Basis For The Unfolding Of Anthrax Lethal
Factor By Protective Antigen Oligomers
Length = 548
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 29 LVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWR 88
L V GY + K ++FL P + + KG+ + + P+ K+TG+ +
Sbjct: 20 LEVEGYTVDVKNKRTFLSPWISNIHEKKGLTKYKSSPEKWSTASDPYS-DFEKVTGRIDK 78
Query: 89 QILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNS 131
+ E R HP V Y I H+ +L D + N+
Sbjct: 79 NVSPEAR--HPLVAA----YPIVHVDMENIILSKNEDQSTQNT 115
>pdb|3HVD|A Chain A, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|B Chain B, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|C Chain C, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|D Chain D, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|E Chain E, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|F Chain F, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|G Chain G, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|H Chain H, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
Length = 548
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 29 LVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWR 88
L V GY + K ++FL P + + KG+ + + P+ K+TG+ +
Sbjct: 20 LEVEGYTVDVKNKRTFLSPWISNIHEKKGLTKYKSSPEKWSTASDPYS-DFEKVTGRIDK 78
Query: 89 QILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNS 131
+ E R HP V Y I H+ +L D + N+
Sbjct: 79 NVSPEAR--HPLVAA----YPIVHVDMENIILSKNEDQSTQNT 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,999,202
Number of Sequences: 62578
Number of extensions: 236827
Number of successful extensions: 691
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 671
Number of HSP's gapped (non-prelim): 30
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)