BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027466
(223 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SUG3|ITPK2_ARATH Inositol-tetrakisphosphate 1-kinase 2 OS=Arabidopsis thaliana
GN=ITPK2 PE=2 SV=2
Length = 353
Score = 303 bits (775), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 147/177 (83%), Positives = 161/177 (90%)
Query: 28 KLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEW 87
K ++VGYALTSKK KSFLQPKLEGLARNKGILFVAIDQN+PLS+QGPFDIVLHK GKEW
Sbjct: 39 KSIIVGYALTSKKIKSFLQPKLEGLARNKGILFVAIDQNKPLSEQGPFDIVLHKQIGKEW 98
Query: 88 RQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA 147
R+ILEE+R HP+VTVLDPP AI HL NRQSMLQCVADMNLS+S G+V VP+QLVI++DA
Sbjct: 99 RRILEEFRLAHPDVTVLDPPDAILHLRNRQSMLQCVADMNLSDSNGRVGVPKQLVIKKDA 158
Query: 148 SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHG 204
SSIP+ V AGL LPLVAKPLVADGSAKSHELSLAYDQ+SL KLEPPLVLQEFVNHG
Sbjct: 159 SSIPEAVNNAGLRLPLVAKPLVADGSAKSHELSLAYDQHSLLKLEPPLVLQEFVNHG 215
>sp|O81893|ITPK3_ARATH Inositol-tetrakisphosphate 1-kinase 3 OS=Arabidopsis thaliana
GN=ITPK3 PE=2 SV=3
Length = 391
Score = 252 bits (644), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 120/178 (67%), Positives = 149/178 (83%)
Query: 30 VVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQ 89
+VVGYALTSKK KSFLQPKLE LAR KGI FVAID NRPLS+QGPFD+VLHKL GKEW +
Sbjct: 81 LVVGYALTSKKKKSFLQPKLELLARRKGIFFVAIDLNRPLSEQGPFDVVLHKLLGKEWEE 140
Query: 90 ILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASS 149
++E+Y+Q HPEVTVLDPP +IQ ++NRQSMLQ +AD+ LS+ G + VP+Q+V+ +D+++
Sbjct: 141 VIEDYQQKHPEVTVLDPPGSIQRIYNRQSMLQGMADLKLSDCSGSLFVPKQMVVLKDSAA 200
Query: 150 IPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGMQM 207
D V++AGL PLVAKPL DG+AKSH+L LAYD+ SL +L+PPLVLQEFVNHG M
Sbjct: 201 SADAVVEAGLKFPLVAKPLWIDGTAKSHQLYLAYDRRSLAELDPPLVLQEFVNHGGVM 258
>sp|Q84Y01|ITPK1_MAIZE Inositol-tetrakisphosphate 1-kinase 1 OS=Zea mays GN=ITPK1 PE=2
SV=1
Length = 342
Score = 178 bits (451), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/175 (49%), Positives = 123/175 (70%), Gaps = 2/175 (1%)
Query: 31 VVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQI 90
V+GYAL KK +SF+QP L A ++G+ V +D ++PL++QGPF +++HKL G +WR
Sbjct: 20 VIGYALAPKKQQSFIQPSLVAQAASRGMDLVPVDASQPLAEQGPFHLLIHKLYGDDWRAQ 79
Query: 91 LEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMN-LSNSYGKVDVPRQLVIERDASS 149
L + HP V ++DPP+AI LHNR SMLQ V++++ ++ +P Q+V+ DA++
Sbjct: 80 LVAFAARHPAVPIVDPPHAIDRLHNRISMLQVVSELDHAADQDSTFGIPSQVVV-YDAAA 138
Query: 150 IPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHG 204
+ D L A L PL+AKPLVADG+AKSH++SL Y + L KL PPLVLQEFVNHG
Sbjct: 139 LADFGLLAALRFPLIAKPLVADGTAKSHKMSLVYHREGLGKLRPPLVLQEFVNHG 193
>sp|Q9SBA5|ITPK1_ARATH Inositol-tetrakisphosphate 1-kinase 1 OS=Arabidopsis thaliana
GN=ITPK1 PE=2 SV=1
Length = 319
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 110/175 (62%), Gaps = 2/175 (1%)
Query: 31 VVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQI 90
+VGYAL +KK SF+QP L +R +GI V +D + L +QG D ++HKL W++
Sbjct: 10 LVGYALAAKKQHSFIQPSLIEHSRQRGIDLVKLDPTKSLLEQGKLDCIIHKLYDVYWKEN 69
Query: 91 LEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYG-KVDVPRQLVIERDASS 149
L E+R+ P V V+D P AI+ LHNR SML+ + + S + VP Q+V+ D+S
Sbjct: 70 LHEFREKCPGVPVIDLPEAIERLHNRVSMLEVITQLRFPVSDSERFGVPEQVVV-MDSSV 128
Query: 150 IPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHG 204
+ L P++AKPL ADGSAKSH++ L YDQ +K L+ P+VLQEFVNHG
Sbjct: 129 LSGGGALGELKFPVIAKPLDADGSAKSHKMFLIYDQEGMKILKAPIVLQEFVNHG 183
>sp|Q7ZU91|ITPK1_DANRE Inositol-tetrakisphosphate 1-kinase OS=Danio rerio GN=itpk1 PE=2
SV=2
Length = 396
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 97/185 (52%), Gaps = 14/185 (7%)
Query: 32 VGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWR--- 88
VGY L+ KK K L R +GI + +D ++P+ QGPFD+++HKLT
Sbjct: 10 VGYWLSEKKIKKLNFQTFVDLCRKQGIEMIQLDLSQPIESQGPFDVIIHKLTDHIVDADQ 69
Query: 89 ---------QILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPR 139
Q +++Y HPE +LDP AI+ L +R + + + S ++ P
Sbjct: 70 NVTESLLLVQGVQDYIDAHPETVILDPLPAIRTLLDRCKSYKLIHKLEHSMEDDRICSPP 129
Query: 140 QLVIERDAS-SIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQ 198
+V++ + + + K G+T P + KP VA G+ SHE+++ + + LK ++PP VLQ
Sbjct: 130 FMVLKTECGFETLEQLHKHGITFPFICKPQVAHGT-NSHEMAIIFSEEDLKDIKPPCVLQ 188
Query: 199 EFVNH 203
F+NH
Sbjct: 189 SFINH 193
>sp|Q5F480|ITPK1_CHICK Inositol-tetrakisphosphate 1-kinase OS=Gallus gallus GN=ITPK1 PE=2
SV=1
Length = 407
Score = 97.4 bits (241), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 93/187 (49%), Gaps = 18/187 (9%)
Query: 32 VGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLT-------- 83
VGY L+ KK + L R +G+ V +D +P+ DQGP D+++HKLT
Sbjct: 10 VGYWLSEKKIRKLNFQAFAELCRKRGVEVVQLDLTKPIEDQGPLDVIIHKLTDVILEADQ 69
Query: 84 ----GKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPR 139
E Q +EY HPE +LDP AI+ L +R + + + ++ P
Sbjct: 70 NDSQSLELVQRFQEYIDAHPETIILDPLPAIRTLLDRSKSYELIRQIEAYMQDERICSPP 129
Query: 140 QLVIERDASSIPD---VVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLV 196
+E ++ D ++ K GL P + K VA G+ SHE+++ ++Q LK + PP V
Sbjct: 130 --FMELTSACGEDTLQLIEKNGLAFPFICKTRVAHGT-NSHEMAIIFNQEGLKAVRPPCV 186
Query: 197 LQEFVNH 203
+Q F+NH
Sbjct: 187 IQSFINH 193
>sp|Q7SY78|ITPK1_XENLA Inositol-tetrakisphosphate 1-kinase OS=Xenopus laevis GN=itpk1 PE=2
SV=1
Length = 396
Score = 93.6 bits (231), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 96/187 (51%), Gaps = 16/187 (8%)
Query: 32 VGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLT-------- 83
VGY ++ KK K L R +GI V ++ +P+ DQGP D+++HKLT
Sbjct: 10 VGYWMSEKKIKKLNFQAFADLCRKRGIEVVQLNLAKPIEDQGPLDVIIHKLTDVILEADQ 69
Query: 84 ----GKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVP- 138
+ Q ++Y + HPE +LDP AI+ L +R + + + ++ P
Sbjct: 70 KDSESMQLVQRFQDYIEAHPETIILDPLPAIRTLLDRSKSYELIRRIETYMQDERICSPP 129
Query: 139 -RQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVL 197
+L+ E D ++ ++ K GL PLV K VA G+ SHE+++ ++ L ++PP V+
Sbjct: 130 FMELMAECDEDTL-KILEKNGLAFPLVCKTRVAHGT-NSHEMAIIFNPEGLWSIKPPCVI 187
Query: 198 QEFVNHG 204
Q F++H
Sbjct: 188 QSFISHN 194
>sp|Q13572|ITPK1_HUMAN Inositol-tetrakisphosphate 1-kinase OS=Homo sapiens GN=ITPK1 PE=1
SV=2
Length = 414
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 14/185 (7%)
Query: 32 VGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLT-------- 83
VGY L+ KK K L R +G+ V ++ +RP+ +QGP D+++HKLT
Sbjct: 10 VGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQ 69
Query: 84 ----GKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPR 139
E +EY HPE VLDP AI+ L +R + + + ++ P
Sbjct: 70 NDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPP 129
Query: 140 QL-VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQ 198
+ + ++ K GLT P + K VA G+ SHE+++ ++Q L ++PP V+Q
Sbjct: 130 FMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNAIQPPCVVQ 188
Query: 199 EFVNH 203
F+NH
Sbjct: 189 NFINH 193
>sp|Q8BYN3|ITPK1_MOUSE Inositol-tetrakisphosphate 1-kinase OS=Mus musculus GN=Itpk1 PE=2
SV=1
Length = 419
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 91/188 (48%), Gaps = 20/188 (10%)
Query: 32 VGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLT-------- 83
VGY L+ KK K L R +GI V ++ +RP+ +QGP D+++HKLT
Sbjct: 10 VGYWLSEKKVKKLNFQAFAELCRKRGIEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQ 69
Query: 84 ----GKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDV-- 137
E +EY HPE VLDP AI+ L +R + + + +Y K D
Sbjct: 70 NDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKI---EAYMKDDRIC 126
Query: 138 --PRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPL 195
P + ++ + GL P + K VA G+ SHE+++ ++Q L ++PP
Sbjct: 127 SPPFMELTSLCGEDTMRLLEQNGLAFPFICKTRVAHGT-NSHEMAIVFNQEGLNAIQPPC 185
Query: 196 VLQEFVNH 203
V+Q F+NH
Sbjct: 186 VVQNFINH 193
>sp|P0C0T1|ITPK1_BOVIN Inositol-tetrakisphosphate 1-kinase OS=Bos taurus GN=ITPK1 PE=1
SV=1
Length = 419
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 20/188 (10%)
Query: 32 VGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLT-------- 83
VGY L+ KK K L R +GI V ++ +RP+ +QGP D+++HKLT
Sbjct: 10 VGYWLSEKKIKKLNFQAFAELCRKRGIEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQ 69
Query: 84 ----GKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPR 139
E +EY HPE VLDP AI+ L +R + + + ++ P
Sbjct: 70 NDSQALELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMKDDRICSPP 129
Query: 140 QLVIERDASSIPDVVLK----AGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPL 195
+ + S D ++ GL P + K VA G+ SHE+++ ++Q L ++PP
Sbjct: 130 FMEL---TSLCGDDTMRLLEENGLAFPFICKTRVAHGT-NSHEMAIVFNQEGLSAIQPPC 185
Query: 196 VLQEFVNH 203
V+Q F+NH
Sbjct: 186 VVQNFINH 193
>sp|O80568|ITPK4_ARATH Inositol-tetrakisphosphate 1-kinase 4 OS=Arabidopsis thaliana
GN=ITPK4 PE=2 SV=2
Length = 488
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 90/204 (44%), Gaps = 28/204 (13%)
Query: 31 VVGYALTSKKTKSFLQ-PKLEGLARNKGILFVAIDQNRPLSDQ-GPFDIVLHKLTGK--- 85
+V Y + + + F + L + G++F+ + PL+ Q DI+ HK T +
Sbjct: 156 IVAYIMKPSRVEDFAKRGALPMYPTSCGLIFLPLMFEFPLASQLKHADIIFHKATDEILS 215
Query: 86 -----------------EWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNL 128
+ L++Y + ++DP I + +R M + +
Sbjct: 216 IELNCSDSKSSVAVTFSTGMEKLKKYMEDQNACAIVDPIRNIYPVVDRLKMQHILLGLEG 275
Query: 129 SNSYGKVDVPRQLVIERDASSIPDV---VLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ 185
+ G+ + ++ D+ PD+ + +AGL+LP + KP VA G A +H +++ +
Sbjct: 276 LGAAGR-KIRGACFLKIDSYDEPDLAQNLSRAGLSLPCIVKPQVACGVADAHSMAIVFRV 334
Query: 186 YSLKKLEPPL--VLQEFVNHGMQM 207
K L P+ ++QE+V+H ++
Sbjct: 335 EDFKNLNTPVPAIIQEYVDHSSRI 358
>sp|Q9XYQ1|ITPK1_ENTHI Inositol-tetrakisphosphate 1-kinase OS=Entamoeba histolytica
GN=ITPK1 PE=1 SV=1
Length = 319
Score = 38.5 bits (88), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/118 (18%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 91 LEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSI 150
+ +Y + HP+V L+ +H+ S + + + + N+ + +P + + +
Sbjct: 69 MRKYEKDHPKVLFLES----SAIHDMMSSREEINALLIKNN---IPIPNSFSV-KSKEEV 120
Query: 151 PDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGMQMA 208
++ L LP + KP A G+ +H++ + +Q + + P + Q ++NH ++
Sbjct: 121 IQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDDIHFPCLCQHYINHNNKIV 178
>sp|Q6FRZ5|SPT5_CANGA Transcription elongation factor SPT5 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=SPT5 PE=3 SV=1
Length = 1010
Score = 33.1 bits (74), Expect = 1.6, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 135 VDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQY 186
++ P+Q VIE+ + +PD+ + L +P+ PL+ S KS +++L Y
Sbjct: 289 IEAPKQSVIEKFCNGVPDIYISQKLLIPVQELPLLLKPS-KSDDVALEEGSY 339
>sp|Q8Y5H2|ASSY_LISMO Argininosuccinate synthase OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=argG PE=3 SV=1
Length = 404
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 14/144 (9%)
Query: 34 YALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTG--------K 85
Y L S ++ + KL +AR +G +A +DQ F++ +H L +
Sbjct: 86 YPLISALSRPLIAKKLVEVARQEGASAIAHGCTGKGNDQVRFEVAIHALAPDLKVVSPVR 145
Query: 86 EWRQILEE---YRQTH--PEVTVLDPPYAI-QHLHNRQSMLQCVADMNLSNSYGKVDVPR 139
+W+ EE Y + H P LD P++I Q+L R + + + + D+
Sbjct: 146 DWKWSREEEINYAKEHDIPVPIDLDNPFSIDQNLWGRSNECGVLENPWTTPPEAAYDLTV 205
Query: 140 QLVIERDASSIPDVVLKAGLTLPL 163
L D + I ++ AG+ + L
Sbjct: 206 SLEDAPDTADIVEITFDAGIPISL 229
>sp|A0AKJ7|ASSY_LISW6 Argininosuccinate synthase OS=Listeria welshimeri serovar 6b
(strain ATCC 35897 / DSM 20650 / SLCC5334) GN=argG PE=3
SV=1
Length = 404
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 14/144 (9%)
Query: 34 YALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTG--------K 85
Y L S ++ + KL +AR +G +A +DQ F++ +H L +
Sbjct: 86 YPLISALSRPLIAKKLVEVARQEGASAIAHGCTGKGNDQVRFEVAIHALAPDLKVISPVR 145
Query: 86 EWRQILEE---YRQTH--PEVTVLDPPYAI-QHLHNRQSMLQCVADMNLSNSYGKVDVPR 139
+W+ EE Y + H P LD P++I Q+L R + + + + D+
Sbjct: 146 DWKWSREEEINYAKEHNIPVPIDLDNPFSIDQNLWGRSNECGVLENPWTTPPEAAYDLTV 205
Query: 140 QLVIERDASSIPDVVLKAGLTLPL 163
L D + I ++ AG+ + L
Sbjct: 206 SLEDAPDTADIVEITFDAGIPISL 229
>sp|Q929S9|ASSY_LISIN Argininosuccinate synthase OS=Listeria innocua serovar 6a (strain
CLIP 11262) GN=argG PE=3 SV=1
Length = 404
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 14/144 (9%)
Query: 34 YALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTG--------K 85
Y L S ++ + KL +AR +G +A +DQ F++ +H L +
Sbjct: 86 YPLISALSRPLIAKKLVEVARQEGASAIAHGCTGKGNDQVRFEVAIHALAPDLKVVSPVR 145
Query: 86 EWRQILEE---YRQTH--PEVTVLDPPYAI-QHLHNRQSMLQCVADMNLSNSYGKVDVPR 139
+W+ EE Y + H P LD P++I Q+L R + + + + D+
Sbjct: 146 DWKWSREEEINYAKEHNIPVPIDLDNPFSIDQNLWGRSNECGVLENPWTTPPEAAYDLTV 205
Query: 140 QLVIERDASSIPDVVLKAGLTLPL 163
L D + I ++ AG+ + L
Sbjct: 206 SLEDAPDTADIVEITFDAGIPISL 229
>sp|B8DH28|ASSY_LISMH Argininosuccinate synthase OS=Listeria monocytogenes serotype 4a
(strain HCC23) GN=argG PE=3 SV=1
Length = 404
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 20/147 (13%)
Query: 34 YALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTG--------K 85
Y L S ++ + KL +AR +G +A +DQ F++ +H L +
Sbjct: 86 YPLISALSRPLIAKKLVEVARQEGASAIAHGCTGKGNDQVRFEVAIHALAPDLKVVSPVR 145
Query: 86 EWRQILEE---YRQTH--PEVTVLDPPYAI-QHLHNRQSMLQCVADMNLSNSYGKVDVPR 139
+W+ EE Y + H P LD P++I Q+L R + + + + D+
Sbjct: 146 DWKWSREEEINYAKEHNIPVPIDLDNPFSIDQNLWGRSNECGVLENPWTTPPEAAYDLTV 205
Query: 140 QLVIERDASSIPDVV---LKAGLTLPL 163
L DA PD+V AG+ + L
Sbjct: 206 SL---EDAPDTPDIVEITFDAGIPISL 229
>sp|Q71XS4|ASSY_LISMF Argininosuccinate synthase OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=argG PE=3 SV=1
Length = 404
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 20/147 (13%)
Query: 34 YALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTG--------K 85
Y L S ++ + KL +AR +G +A +DQ F++ +H L +
Sbjct: 86 YPLISALSRPLIAKKLVEVARQEGASAIAHGCTGKGNDQVRFEVAIHALAPDLKVVSPVR 145
Query: 86 EWRQILEE---YRQTH--PEVTVLDPPYAI-QHLHNRQSMLQCVADMNLSNSYGKVDVPR 139
+W+ EE Y + H P LD P++I Q+L R + + + + D+
Sbjct: 146 DWKWSREEEINYAKEHNIPVPIDLDNPFSIDQNLWGRSNECGVLENPWTTPPEAAYDLTV 205
Query: 140 QLVIERDASSIPDVV---LKAGLTLPL 163
L DA PD+V AG+ + L
Sbjct: 206 SL---EDAPDTPDIVEITFDAGIPISL 229
>sp|C1KX43|ASSY_LISMC Argininosuccinate synthase OS=Listeria monocytogenes serotype 4b
(strain CLIP80459) GN=argG PE=3 SV=1
Length = 404
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 20/147 (13%)
Query: 34 YALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTG--------K 85
Y L S ++ + KL +AR +G +A +DQ F++ +H L +
Sbjct: 86 YPLISALSRPLIAKKLVEVARQEGASAIAHGCTGKGNDQVRFEVAIHALAPDLKVVSPVR 145
Query: 86 EWRQILEE---YRQTH--PEVTVLDPPYAI-QHLHNRQSMLQCVADMNLSNSYGKVDVPR 139
+W+ EE Y + H P LD P++I Q+L R + + + + D+
Sbjct: 146 DWKWSREEEINYAKEHNIPVPIDLDNPFSIDQNLWGRSNECGVLENPWTTPPEAAYDLTV 205
Query: 140 QLVIERDASSIPDVV---LKAGLTLPL 163
L DA PD+V AG+ + L
Sbjct: 206 SL---EDAPDTPDIVEITFDAGIPISL 229
>sp|Q6LV25|LEU3_PHOPR 3-isopropylmalate dehydrogenase OS=Photobacterium profundum GN=leuB
PE=3 SV=1
Length = 362
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 23/137 (16%)
Query: 87 WRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVAD------MNLSNSYGKVDVPRQ 140
WR+++EE + +PEVT + H++ + +Q + D M SN +G +
Sbjct: 205 WREVVEEVAKDYPEVT-------LNHMYIDNATMQLIKDPSQFDVMLCSNIFGDIISDEC 257
Query: 141 LVIERDASSIPDVVLK---------AGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL 191
+I +P L AG + P +A +A+ A+ +L +YSL +
Sbjct: 258 AMITGSMGMLPSASLNQEKFGMYEPAGGSAPDIAGKNIANPVAQILSAALML-RYSLDEE 316
Query: 192 EPPLVLQEFVNHGMQMA 208
+ +++ V+ ++
Sbjct: 317 KAARAIEQAVSQALEAG 333
>sp|Q6CWW9|SPT5_KLULA Transcription elongation factor SPT5 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=SPT5 PE=3 SV=1
Length = 1036
Score = 31.6 bits (70), Expect = 4.6, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 135 VDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQY 186
++ P+Q VIE+ + +PDV L +P+ PL+ + KS E+ L Y
Sbjct: 295 IEAPKQSVIEKFVNGVPDVYSNQKLLIPVQELPLLLKPT-KSDEVRLDVGSY 345
>sp|Q759T6|SPT5_ASHGO Transcription elongation factor SPT5 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=SPT5 PE=3 SV=2
Length = 958
Score = 31.2 bits (69), Expect = 5.5, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 135 VDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQY 186
++ P+Q VIE+ + +PD+ + L +P+ PL+ S KS ++ L Y
Sbjct: 241 IEAPKQSVIEKFCNGVPDIYVNQKLLIPVQELPLLLKPS-KSDDVRLEPGSY 291
>sp|P27692|SPT5_YEAST Transcription elongation factor SPT5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SPT5 PE=1 SV=1
Length = 1063
Score = 31.2 bits (69), Expect = 5.6, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 135 VDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQY 186
++ P+Q VIE+ + +PD+ + L +P+ PL+ + KS +++L Y
Sbjct: 337 IEAPKQSVIEKFCNGVPDIYISQKLLIPVQELPLLLKPN-KSDDVALEEGSY 387
>sp|A8AKV5|TRMA_CITK8 tRNA (uracil(54)-C(5))-methyltransferase OS=Citrobacter koseri
(strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=trmA
PE=3 SV=1
Length = 366
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 22 QTQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGI---LFVAIDQNRPLSDQGPFDIV 78
+ Q +S++ V + S+ + +EG+ N+ + LF ID +S+Q ++
Sbjct: 65 EQQTKSRIRVDSFPAASELINQLMTAMIEGVRHNRVLRHKLF-QIDYLTTMSNQAVVSLL 123
Query: 79 LHKLTGKEWRQILEEYR 95
HK EWRQ E R
Sbjct: 124 YHKKLDDEWRQEAETLR 140
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,543,462
Number of Sequences: 539616
Number of extensions: 3285821
Number of successful extensions: 9544
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 9516
Number of HSP's gapped (non-prelim): 29
length of query: 223
length of database: 191,569,459
effective HSP length: 113
effective length of query: 110
effective length of database: 130,592,851
effective search space: 14365213610
effective search space used: 14365213610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)